Molecular and Genomic Study of Beneficial and Pathogenic Plant-Microbe Interactions
Gary Stacey Lab
Research Interests
ATP is a ubiquitous compound in all living cells; it not only provides the energy to drive many biochemical reactions, but also functions in signal transduction as a substrate for kinases, adenylate cyclases, etc. However, ATP was also shown to be an essential signaling agent outside of cells, where it is referred to as extracellular ATP (eATP). An extensive literature exists in animals implicating eATP in numerous cellular processes, including neurotransmission, immune responses, cell growth, and cell death. Initial observations of effects of eATP in animals were met with considerable skepticism. However, much less is known about the role of extracellular ATP in plants. The laboratory identified the first plant receptors for eATP and continues to study the role of these receptors in the ability of plants to respond to both abiotic and biotic stress.
Soybeans are the major source of nitrogen for livestock feed and are also processed into protein-rich products for human consumption. In 2020, soybean was grown on more than 90 million acres in the U.S. with an estimated value of more than $46 billion. Soybean is a major crop worldwide due to its ability to fix atmospheric N2 through its symbiotic relationship with soil bacteria. It has been estimated that more than 60 million metric tons of N2 are fixed by legumes annually with a fertilizer replacement value of $7-10 billion. The Gary Stacey lab’s research group has a specific focus on understanding unique areas of the rhizobial-legume symbiosis that are critical for nodule formation and nitrogen fixation. Data integration and system modeling of complex biological processes require detailed, functional genomic and biochemical data, the latter often overlooked in the current age of large-scale genomic analyses. While the early events in symbiotic establishment are well studied at a genetic level, much less is known about the detailed biochemical processes that define the rhizobial infection process. They utilize high-resolution sampling of root hair cells to explore in detail the molecular mechanisms leading to the establishment of a N2-fixing symbiosis. This approach has led to the identification of new components of the nodulation signaling cascade, which interact directly with the Nod factor receptors. Filling in the gaps in the lab’s understanding of the rhizobial-legume infection process will be critical to ongoing efforts to transfer this symbiosis to non-leguminous plants (e.g., maize).
ABOUT THE LAB
Current data indicate that purinergic signaling can potentially affect every cell in the human body. Indeed, one theory is that extracellular ATP (eATP) is the oldest, extracellular signal involved in cell-cell communication. The mechanisms of purinergic signaling are well-established in mammals and, indeed, support a multibillion-dollar pharmaceutical industry. In contrast, relatively little is known about purinergic signaling in plants or other eukaryotes. Plants do not possess canonical P2X or P2Y purinoreceptors but instead recognize eATP through novel lectin-receptor-like kinases, termed P2K. The lab previously identified two, plant purinoreceptors, P2K1 and P2K2, but data suggest that many others remain to be identified. Their research indicates that purinergic signaling in plants impacts environmental stress responses, increases in cellular calcium levels, as well as reactive oxygen species, metabolism, systemic signaling, growth, and cell death. Hence, purinergic signaling is as ubiquitous and impactful in plants as that found in mammals and, indeed, many of the downstream effects are similar. The differences seen, comparing plants and animals, appear largely due to the unique biochemistry of the P2K receptors. Hence, a key objective of their research is the identification of the full repertoire of plant receptors, including additional P2K-type and, perhaps, other novel purinoreceptor families. The goals of their research are to:
- Identify additional plant purinergic receptors.
- Identify other genes/proteins involved in purinergic signaling.
- Expand studies on purinergic signaling to other plant species.
Since our original identification of the first plant purinoreceptors, the laboratory has been highly productive, greatly expanding its knowledge of eukaryotic purinergic signaling beyond the wealth of information available in mammalian systems. The net result of their work is to provide the comparative data to add to the lab’s overall understanding of purinergic signaling in higher eukaryotes, illustrating differences and similarities, and ultimately laying the basis for opportunities to manipulate these pathways for human benefit.
The long-term goal of the lab’s work is to further fundamental understanding of the agronomically important soybean N2-fixing symbiosis. Soybeans are the major source of nitrogen for livestock feed and are also processed into protein-rich products for human consumption. In 2020, soybean was grown on more than 90 million acres in the U.S. with an estimated value of more than $46 billion. Soybean is a major crop worldwide due to its ability to fix atmospheric N2 through its symbiotic relationship with soil bacteria. It has been estimated that more than 60 million metric tons of N2 are fixed by legumes annually with a fertilizer replacement value of $7-10 billion. Their research group has a specific focus on understanding unique areas of the rhizobial-legume symbiosis that are critical for nodule formation and nitrogen fixation. Collectively, their team brings a unique repertoire of techniques that allow for a detailed functional genomic and biochemical analysis of the nodulation process with precision at the molecular level. The lab’s multi-disciplinary research team brings the necessary expertise in functional genomics, microscopy, biochemistry, mass spectrometry and computational biology to achieve the proposed goals. While the early events in symbiotic establishment are well studied at a genetic level, much less is known about the detailed biochemical processes that define the rhizobial infection process. They will use tools developed in the lab from studies in Arabidopsis to provide a detailed examination of the protein complexes within the root hair cell, which are critical for rhizobium infection. This will include a careful examination of the role of the plant innate immunity response. Surprisingly, given the detailed genetic analysis of nodulation, relatively few studies have explored the biochemistry of the infection process. The ultimate goals will be to expand their understanding of the N2-fixing symbiosis filling in critical gaps in their knowledge that may eventually lead to the successful transfer of nitrogen fixing ability to other plants.
LAB MEMBERS




Research Topics
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Bacterial pathogenesis
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CRISPR-based gene editing in plants
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Crop improvement and agricultural sustainability
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Gene editing
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Genomic tools and systems biology
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Host-pathogen interactions
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Legume-rhizobia interaction
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Multi-stress plant responses
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Nitrogen fixation in soybeans
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Phosphoproteomics and protein kinase studies
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Plant immunity and stress responses
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Plant-microbe interactions
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Reactive Oxygen Species (ROS) signaling
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Bacterial pathogenesis
-
CRISPR-based gene editing in plants
-
Crop improvement and agricultural sustainability
-
Gene editing
-
Genomic tools and systems biology
-
Host-pathogen interactions
-
Legume-rhizobia interaction
-
Multi-stress plant responses
-
Nitrogen fixation in soybeans
-
Phosphoproteomics and protein kinase studies
-
Plant immunity and stress responses
-
Plant-microbe interactions
-
Reactive Oxygen Species (ROS) signaling
In the news

Feb. 24, 2022
Another piece of the pathway: Stacey lab identifies enzyme key to regulating plant metabolism
Researcher Sung-Hwan Cho holds mutant Arabidopsis thalianas. The Gary Stacey lab used these mutant variations to study how plants react to external stressors. | Photo by Karly Balslew, Bond LSC By: Karly Balslew | Bond LSC When we get hurt, our body signals our brain to warn us about stress and damage. We acknowledge the damage and then initiate the proper steps to heal. Plants may have different receptors that read these stress signals, but the process is similar. “When someone crushes the plant tissue, this triggers their immune system like us,” said Sung-Hwan…

May 25, 2021
New observation from Stacey lab could help advance plant engineering
Large amounts of the Arabidopsis plant are grown at Bond Life Sciences Center for multiple labs to experiment with and use. | photo by Mariah Cox, Bond LSC By Lauren Hines | Bond LSC Think about how a home alarm system alerts a person to a potential burglary with sensors detecting whether an intruder picked a lock, came through a window or came through a garage. Plants are much like this, surviving with the help of their thousands of sensors that can send danger signals to the whole plant so it can react effectively. “Plants have to…

Dec. 11, 2018
Stacey named National Academy of Inventors Fellow
By Roger Meissen, Bond LSC Science and invention are both about discovering the possibilities in something. Those possibilities can create something new that improves the lives of people and advances our understanding of the world. It’s no surprise that Gary Stacey, a Bond Life Sciences Center primary investigator, is being recognized this year as one of 148 academic fellows by the National Academy of Inventors. “I am very proud to welcome another class of outstanding NAI Fellows, whose collective achievements have helped shape the future and who each day work to improve our world,” said Paul R.