Molecular and Genomic Study of Beneficial and Pathogenic Plant-Microbe Interactions

Gary Stacey Lab

Research Interests

ATP is a ubiquitous compound in all living cells; it not only provides the energy to drive many biochemical reactions, but also functions in signal transduction as a substrate for kinases, adenylate cyclases, etc. However, ATP was also shown to be an essential signaling agent outside of cells, where it is referred to as extracellular ATP (eATP). An extensive literature exists in animals implicating eATP in numerous cellular processes, including neurotransmission, immune responses, cell growth, and cell death. Initial observations of effects of eATP in animals were met with considerable skepticism. However, much less is known about the role of extracellular ATP in plants. The laboratory identified the first plant receptors for eATP and continues to study the role of these receptors in the ability of plants to respond to both abiotic and biotic stress.

Soybeans are the major source of nitrogen for livestock feed and are also processed into protein-rich products for human consumption. In 2020, soybean was grown on more than 90 million acres in the U.S. with an estimated value of more than $46 billion. Soybean is a major crop worldwide due to its ability to fix atmospheric N2 through its symbiotic relationship with soil bacteria. It has been estimated that more than 60 million metric tons of N2 are fixed by legumes annually with a fertilizer replacement value of $7-10 billion. The Gary Stacey lab’s research group has a specific focus on understanding unique areas of the rhizobial-legume symbiosis that are critical for nodule formation and nitrogen fixation. Data integration and system modeling of complex biological processes require detailed, functional genomic and biochemical data, the latter often overlooked in the current age of large-scale genomic analyses. While the early events in symbiotic establishment are well studied at a genetic level, much less is known about the detailed biochemical processes that define the rhizobial infection process. They utilize high-resolution sampling of root hair cells to explore in detail the molecular mechanisms leading to the establishment of a N2-fixing symbiosis. This approach has led to the identification of new components of the nodulation signaling cascade, which interact directly with the Nod factor receptors. Filling in the gaps in the lab’s understanding of the rhizobial-legume infection process will be critical to ongoing efforts to transfer this symbiosis to non-leguminous plants (e.g., maize).

PRINCIPAL INVESTIGATOR

Gary Stacey

Gary Stacey

Principal Investigator, Bond LSC

Curators' Distinguished Professor of Plant Science & Technology

phone(573) 424-9587

email staceyg@missouri.edu

Gary Stacey is Curators’ Distinguished Professor and Professor of Plant Science and Technology at the University of Missouri-Columbia. His research focuses generally on molecular aspects of plant-microbe interactions, including studies of the beneficial legume-rhizobium symbiosis and plant-fungal pathogen interactions. He has also been instrumental in the development of genomic resources for the study of soybean.

He has mentored 51 postdoctoral fellows and 36 Ph.D. and 8 M.S. graduate students. Past postdocs have gone on to start independent careers in academia (e.g., Michigan State Univ., Washington State Univ.), industry, as well as winning the 2005 USA National Medal of Technology, which was presented to Dr. Puvanesarajah by Pres. Bush. Past graduate students (Dr. Jeongmin Choi) have won the 2015 distinguished dissertation award in Life Sciences/ Biology presented by the National Council of Graduate Study/Proquest, while others have started successful, multimillion-dollar businesses (e.g., Seegene.com).

Dr. Stacey has authored or co-authored more than 340 peer-reviewed research articles (37811 citations, h index=105), 79 book chapters, and 13 patents. Two of his patents support the product OptimizeTM sold by Novozymes, Inc., to enhance rhizobial inoculant performance on soybean. He has edited or co-edited 17 books/reports. He has served on various advisory/editorial boards and, from 2010 to 2013, served as Editor-in-Chief of the journal Molecular Plant-Microbe Interactions. He founded the journal series ‘Current Protocols in Plant Biology,’ published by Wiley, and served as the editor-in-chief through Fall, 2021.

He chaired the Public Affairs Committee of the American Society for Plant Biologists (ASPB) from 2006 to 2011. From 2009-2018 he was chair of the DOE, Biological and Environmental Research Advisory Committee. In 2008, he founded a not-for-profit corporation, Missouri Energy Initiative (MEI; www.moenergy.org), and served as its Acting Executive Director until 2011. In 2021, he cofounded the biotechnology company, Viosimos Agricuture LLC.

He has received a variety of honors, including being named Fellow of the American Association for the Advancement of Science. American Academy of Microbiology, American Society for Plant Biology, St. Louis Academy of Science, National Academy of Inventors and, most recently, being named as the 2025 winner of the Stephen Hales Prize by the American Society for Plant Biology.

More about Gary Stacey


ABOUT THE LAB

Current data indicate that purinergic signaling can potentially affect every cell in the human body. Indeed, one theory is that extracellular ATP (eATP) is the oldest, extracellular signal involved in cell-cell communication. The mechanisms of purinergic signaling are well-established in mammals and, indeed, support a multibillion-dollar pharmaceutical industry. In contrast, relatively little is known about purinergic signaling in plants or other eukaryotes. Plants do not possess canonical P2X or P2Y purinoreceptors but instead recognize eATP through novel lectin-receptor-like kinases, termed P2K. The lab previously identified two, plant purinoreceptors, P2K1 and P2K2, but data suggest that many others remain to be identified. Their research indicates that purinergic signaling in plants impacts environmental stress responses, increases in cellular calcium levels, as well as reactive oxygen species, metabolism, systemic signaling, growth, and cell death. Hence, purinergic signaling is as ubiquitous and impactful in plants as that found in mammals and, indeed, many of the downstream effects are similar. The differences seen, comparing plants and animals, appear largely due to the unique biochemistry of the P2K receptors. Hence, a key objective of their research is the identification of the full repertoire of plant receptors, including additional P2K-type and, perhaps, other novel purinoreceptor families. The goals of their research are to:

  1. Identify additional plant purinergic receptors.
  2. Identify other genes/proteins involved in purinergic signaling.
  3. Expand studies on purinergic signaling to other plant species.

Since our original identification of the first plant purinoreceptors, the laboratory has been highly productive, greatly expanding its knowledge of eukaryotic purinergic signaling beyond the wealth of information available in mammalian systems. The net result of their work is to provide the comparative data to add to the lab’s overall understanding of purinergic signaling in higher eukaryotes, illustrating differences and similarities, and ultimately laying the basis for opportunities to manipulate these pathways for human benefit.

The long-term goal of the lab’s work is to further fundamental understanding of the agronomically important soybean N2-fixing symbiosis. Soybeans are the major source of nitrogen for livestock feed and are also processed into protein-rich products for human consumption. In 2020, soybean was grown on more than 90 million acres in the U.S. with an estimated value of more than $46 billion. Soybean is a major crop worldwide due to its ability to fix atmospheric N2 through its symbiotic relationship with soil bacteria. It has been estimated that more than 60 million metric tons of N2 are fixed by legumes annually with a fertilizer replacement value of $7-10 billion. Their research group has a specific focus on understanding unique areas of the rhizobial-legume symbiosis that are critical for nodule formation and nitrogen fixation. Collectively, their team brings a unique repertoire of techniques that allow for a detailed functional genomic and biochemical analysis of the nodulation process with precision at the molecular level. The lab’s multi-disciplinary research team brings the necessary expertise in functional genomics, microscopy, biochemistry, mass spectrometry and computational biology to achieve the proposed goals. While the early events in symbiotic establishment are well studied at a genetic level, much less is known about the detailed biochemical processes that define the rhizobial infection process. They will use tools developed in the lab from studies in Arabidopsis to provide a detailed examination of the protein complexes within the root hair cell, which are critical for rhizobium infection. This will include a careful examination of the role of the plant innate immunity response. Surprisingly, given the detailed genetic analysis of nodulation, relatively few studies have explored the biochemistry of the infection process. The ultimate goals will be to expand their understanding of the N2-fixing symbiosis filling in critical gaps in their knowledge that may eventually lead to the successful transfer of nitrogen fixing ability to other plants.

LAB MEMBERS

Mengran Yang

Mengran Yang

Postdoctoral Fellow

emailyangmengr@missouri.edu

phone(573) 884-4799

place201 Bond LSC

Jinrong Wan

Jinrong Wan

Research Scientist/Academic

emailwanj@missouri.edu

place201 Bond LSC

Jaehyo Song

Jaehyo Song

Postdoctoral Fellow

emailjhsong@mail.missouri.edu

phone(573) 884 4799

place201 Bond LSC

Shin-ichiro Agake

Shin-ichiro Agake

Postdoctoral Fellow

Research Topics

In the news