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Publications

2021

Structure of the mature Rous sarcoma virus lattice reveals a role for IP6 in the formation of the capsid hexamer. Obr M, Ricana CL, Nikulin N, Feathers J-PR, Klanschnig M, Thader A, Johnson MC, Vogt VM, Schur FKM, Dick RA. Nature Communications; 12(1):3226.

Date published: December 1, 2021
Featured in this article: Marc Johnson.

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Genetic variation among 481 diverse soybean accessions, inferred from genomic re-sequencing. Valliyodan B, Brown AV, Wang J, Patil G, Liu Y, Otyama PI, Nelson RT, Vuong T, Song Q, Musket TA, Wagner R, Marri P, Reddy S, Sessions A, Wu X, Grant D, Bayer PE, Roorkiwal M, Varshney RK, Liu X, Edwards D, Xu D, Joshi T, Cannon SB, Nguyen HT. Scientific Data; 8(1):50.

Date published: December 1, 2021
Featured in this article: Juexin Wang, Dong Xu, Trupti Joshi.

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Developmental exposure to silver nanoparticles leads to long term gut dysbiosis and neurobehavioral alterations. Lyu Z, Ghoshdastidar S, Rekha KR, Suresh D, Mao J, Bivens N, Kannan R, Joshi T, Rosenfeld CS, Upendran A. Scientific Reports; 11(1):6558.

Date published: December 1, 2021
Featured in this article: Zhen Lyu, Jiude Mao, Nathan Bivens, Trupti Joshi.

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A mouse model of prenatal exposure to Interleukin-6 to study the developmental origin of health and disease. Srivastava T, Joshi T, Heruth DP, Rezaiekhaligh MH, Garola RE, Zhou J, Boinpelly VS, Ali MF, Alon US, Sharma M, Vanden Heuvel GB, Mahajan P, Priya L, Jiang Y, McCarthy ET, Savin VJ, Sharma R, Sharma M. Scientific Reports; 11(1):13260.

Date published: December 1, 2021
Featured in this article: Trupti Joshi, Yuexu Jiang.

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S-acylation of P2K1 mediates extracellular ATP-induced immune signaling in Arabidopsis. Chen D, Hao F, Mu H, Ahsan N, Thelen JJ, Stacey G. Nature Communications; 12(1):2750.

Date published: December 1, 2021
Featured in this article: Jay Thelen, Gary Stacey.

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Evolutionary analysis of the Delta and Delta Plus variants of the SARS-CoV-2 viruses. Kannan SR, Spratt AN, Cohen AR, Naqvi SH, Chand HS, Quinn TP, Lorson CL, Byrareddy SN, Singh K. Journal of Autoimmunity; 124:102715.

Date published: November 1, 2021
Featured in this article: Thomas Quinn, Christian Lorson, Kamlendra Singh.

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The impact of stress combination on reproductive processes in crops. Sinha R, Fritschi FB, Zandalinas SI, Mittler R. Plant Science; 311:111007.

Date published: October 1, 2021
Featured in this article: Ranjita Sinha, Ron Mittler.

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Recent Developments Toward Integrated Metabolomics Technologies (UHPLC-MS-SPE-NMR and MicroED) for Higher-Throughput Confident Metabolite Identifications. Ghosh R, Bu G, Nannenga BL, Sumner LW. Frontiers in Molecular Biosciences; 8:720955.

Date published: September 2, 2021
Featured in this article: Lloyd Sumner.

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Fecal metabolome signature in the HIV-1 elite control phenotype: Enrichment of dipeptides acts as an HIV-1 antagonist but a Prevotella agonist. Sperk M, Ambikan AT, Ray S, Singh K, Mikaeloff F, Diez RC, Narayanan A, Vesterbacka J, Nowak P, Sönnerborg A, Neogi U. Journal of Virology; 95(18):e00479-21.

Date published: September 1, 2021
Featured in this article: Kamlendra Singh.

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Bridging the gap between analytical and microbial sciences in microbiome research. Quinn RA, Hagiwara KA, Liu K, Goudarzi M, Pathmasiri W, Sumner LW, Metz TO. mSystems; 6(5):e00585-21.

Date published: September 1, 2021
Featured in this article: Lloyd Sumner.

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Therapeutic implications of SARS-CoV-2 dysregulation of the gut-brain-lung axis. Johnson SD, Olwenyi OA, Bhyravbhatla N, Thurman M, Pandey K, Klug EA, Johnston M, Dyavar SR, Acharya A, Podany AT, Fletcher CV, Mohan M, Singh K, Byrareddy SN. World Journal of Gastroenterology; 27(29):4763-4783.

Date published: August 7, 2021
Featured in this article: Kamlendra Singh.

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Primary metabolism: It’s more than what’s for dinner. Anderson JC, Peck SC. Molecular Plant; 14(8):1219-1220.

Date published: August 2, 2021
Featured in this article: Scott Peck.

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SPM Receptor Expression and Localization in Irradiated Salivary Glands. dos Santos HT, Nam K, Hunt JP, Buchmann LO, Monroe MM, Baker OJ. Journal of Histochemistry and Cytochemistry; 69(8):523-534.

Date published: August 1, 2021
Featured in this article: Harim Tavares dos Santos, Kihoon Nam, Olga Baker.

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Monitoring sars-cov-2 populations in wastewater by amplicon sequencing and using the novel program sam refiner. Gregory DA, Wieberg CG, Wenzel J, Lin C-H, Johnson MC. Viruses; 13(8):1647.

Date published: August 1, 2021
Featured in this article: Marc Johnson.

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Survival motor neuron deficiency slows myoblast fusion through reduced myomaker and myomixer expression. McCormack NM, Villalón E, Viollet C, Soltis AR, Dalgard CL, Lorson CL, Burnett BG. Journal of Cachexla, Sarcopenla and Muscle; 12(4):1098-1116.

Date published: August 1, 2021
Featured in this article: Christian Lorson.

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A combined drug treatment that reduces mitochondrial iron and reactive oxygen levels recovers insulin secretion in NAF-1-deficient pancreatic cells. Karmi O, Sohn Y-S, Marjault H-B, Israeli T, Leibowitz G, Ionnidis K, Nahmias Y, Mittler R, Cabantchik IZ, Nechushtai R. Antioxidants; 10(8):1160.

Date published: August 1, 2021
Featured in this article: Ron Mittler.

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Brassica rapa Domestication: Untangling Wild and Feral Forms and Convergence of Crop Morphotypes. McAlvay AC, Ragsdale AP, Mabry ME, Qi X, Bird KA, Velasco P, An H, Pires JC, Emshwiller E. Molecular Biology and Evolution; 38(8):3358-3372.

Date published: August 1, 2021
Featured in this article: Hong An, J. Chris Pires.

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Variation in gene expression between two sorghum bicolor lines differing in innate immunity response. Cui Y, Chen D, Jiang Y, Xu D, Balint-Kurti P, Stacey G. Plant; 10(8):1536.

Date published: August 1, 2021
Featured in this article: Yaya Cui, Yuexu Jiang, Dong Xu, Gary Stacey.

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Arabidopsis group C Raf-like protein kinases negatively regulate abscisic acid signaling and are direct substrates of SnRK2. Kamiyama Y, Hirotani M, Ishikawa S, Minegishi F, Katagiri S, Rogan CJ, Takahashi F, Nomoto M, Ishikawa K, Kodama Y, Tada Y, Takezawa D, Anderson JC, Peck SC, Shinozaki K, Umezawa T. Proceedings of the National Academy of Sciences of the United States of America; 1118(30):e2100073118.

Date published: July 27, 2021
Featured in this article: Scott Peck.

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High-Throughput Analysis of Tissue-Embedded Single Cells by Mass Spectrometry with Bimodal Imaging and Object Recognition. Stopka SA, Wood EA, Khattar R, Agtuca BJ, Abdelmoula WM, Agar NYR, Stacey G, Vertes A. Analytical Chemistry; 93(28):9677-9687.

Date published: July 20, 2021
Featured in this article: Gary Stacey.

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G2PDeep: A web-based deep-learning framework for quantitative phenotype prediction and discovery of genomic markers. Zeng S, Mao Z, Ren Y, Wang D, Xu D, Joshi T. Nucleic Acids Research; 49(W1):W228-W236.

Date published: July 2, 2021
Featured in this article: Shuai Zeng, Duolin Wang, Dong Xu, Trupti Joshi.

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SARS-CoV-2 show no infectivity at later stages in a prolonged COVID-19 patient despite positivity in RNA testing. Wan X-F, Tang CY, Ritter D, Wang Y, Li T, Segovia K, Kosikova M, Johnson M, Kwon HJ, Xie H, Hammer RD, McElroy JA. Journal of Medical Virology; 93(7):4570-4575.

Date published: July 1, 2021
Featured in this article: Henry Wan, Cynthia Tang, Yang Wang, Marc Johnson.

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grasviq: an image analysis framework for automatically quantifying vein number and morphology in grass leaves. Robil JM, Gao K, Neighbors CM, Boeding M, Carland FM, Bunyak F, McSteen P. Plant Journal; 107(2):629-648.

Date published: July 1, 2021
Featured in this article: Jan Lorie Robil, Paula McSteen.

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Vascular and nonvascular transmission of systemic reactive oxygen signals during wounding and heat stress. Zandalinas SI, Mittler R. Plant Physiology; 186(3):1721-1733.

Date published: July 1, 2021
Featured in this article: Ron Mittler.

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Integration of electric, calcium, reactive oxygen species and hydraulic signals during rapid systemic signaling in plants. Fichman Y, Mittler R. Plant Journal; 107(1):7-20.

Date published: July 1, 2021
Featured in this article: Yosef Fichman, Ron Mittler.

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The best of both worlds: Combining lineage-specific and universal bait sets in target-enrichment hybridization reactions. Hendriks KP, Mandáková T, Hay NM, Ly E, Hooft van Huysduynen A, Tamrakar E, Thomas SK, Toro-Núñez O, Pires JC, Nikolov LA, Koch MA, Windham MD, Lysak MA, Forest F, Mummenhoff K, Baker WJ, Lens F, Bailey CD. Applications in Plant Sciences; 9(7):e11438.

Date published: July 1, 2021
Featured in this article: J. Chris Pires.

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Comparative phylogenetics of repetitive elements in a diverse order of flowering plants (Brassicales). Beric A, Mabry ME, Harkess AE, Brose J, Schranz ME, Conant GC, Edger PP, Meyers BC, Pires JC. G3: Genes, Genomes, Genetics; 11(7):jkab14.

Date published: July 1, 2021
Featured in this article: J. Chris Pires.

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Domain-specific Topic Model for Knowledge Discovery in Computational and Data-Intensive Scientific Communities. Zhang Y, Calyam P, Joshi T, Nair S, Xu D. IEEE Transactions on Knowledge and Data Engineering; 1-19.

Date published: July 1, 2021
Featured in this article: Trupti Joshi, Dong Xu.

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Redox-dependent structural switch and CBF activation confer freezing tolerance in plants. Lee ES, Park JH, Wi SD, Kang CH, Chi YH, Chae HB, Paeng SK, Ji MG, Kim W-Y, Kim MG, Yun D-J, Stacey G, Lee SY. Nature Plants; 7(7):914-922.

Date published: July 1, 2021
Featured in this article: Gary Stacey.

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Soybean Hairy Root Transformation: A Rapid and Highly Efficient Method. Song J, Tóth K, Montes-Luz B, Stacey G. Current Protocols; 1(7):e195.

Date published: July 1, 2021
Featured in this article: Gary Stacey.

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Mass spectrometry-based metabolomics: a guide for annotation, quantification and best reporting practices. Alseekh S, Aharoni A, Brotman Y, Contrepois K, D'Auria J, Ewald J, C Ewald J, Fraser PD, Giavalisco P, Hall RD, Heinemann M, Link H, Luo J, Neumann S, Nielsen J, Perez de Souza L, Saito K, Sauer U, Schroeder FC, Schuster S, Siuzdak G, Skirycz A, Sumner LW, Snyder MP, Tang H, Tohge T, Wang Y, Wen W, Wu S, Xu G, Zamboni N, Fernie AR. Nature Methods; 18(7):747-756.

Date published: July 1, 2021
Featured in this article: Lloyd Sumner.

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Conserved opposite functions in plant resistance to biotrophic and necrotrophic pathogens of the immune regulator srfr1. Son G-H, Moon J, Shelake RM, Vuong UT, Ingle RA, Gassmann W, Kim J-Y, Kim S-H. International Journal of Molecular Sciences; 22(12):6427.

Date published: June 2, 2021
Featured in this article: Walter Gassmann.

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Global Warming, Climate Change, and Environmental Pollution: Recipe for a Multifactorial Stress Combination Disaster. Zandalinas SI, Fritschi FB, Mittler R. Trends in Plant Science; 26(6):588-599.

Date published: June 1, 2021
Featured in this article: Ron Mittler.

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Ceruloplasmin as a source of Cu for a fungal pathogen. Besold AN, Shanbhag V, Petris MJ, Culotta VC. Journal of Inorganic Biochemistry; 219:111424.

Date published: June 1, 2021
Featured in this article: Vinit Shanbhag, Michael Petris.

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Cross species multi-omics reveals cell wall sequestration and elevated global transcript abundance as mechanisms of boron tolerance in plants. Wang G, DiTusa SF, Oh D-H, Herrmann AD, Mendoza-Cozatl DG, O'Neill MA, Smith AP, Dassanayake M. New Phytologist; 230(5):1985-2000.

Date published: June 1, 2021
Featured in this article: David Mendoza-Cózatl.

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Transcription Factor β-Catenin Plays a Key Role in Fluid Flow Shear Stress-Mediated Glomerular Injury in Solitary Kidney. Srivastava T, Heruth DP, Duncan RS, Rezaiekhaligh MH, Garola RE, Priya L, Boinpelly VC, Novak J, Ali MF, Joshi T, Alon US, Jiang Y, McCarthy ET, Savin VJ, Sharma R, Johnson ML, Sharma M. Cells; 10(5).

Date published: May 19, 2021
Featured in this article: Trupti Joshi, Yuexu Jiang.

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The impact of water deficit and heat stress combination on the molecular response, physiology, and seed production of soybean. Cohen I, Zandalinas SI, Fritschi FB, Sengupta S, Fichman Y, Azad RK, Mittler R. Physiologia Plantarum; 172(1):41-52.

Date published: May 1, 2021
Featured in this article: Yosef Fichman, Ron Mittler.

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The impact of multifactorial stress combination on plant growth and survival. Zandalinas SI, Sengupta S, Fritschi FB, Azad RK, Nechushtai R, Mittler R. New Phytologist; 230(3):1034-1048.

Date published: May 1, 2021
Featured in this article: Ron Mittler.

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P2Y receptors for extracellular nucleotides: Contributions to cancer progression and therapeutic implications. Woods LT, Forti KM, Shanbhag VC, Camden JM, Weisman GA. Biochemical Pharmacology; 187:114406.

Date published: May 1, 2021
Featured in this article: Lucas Woods, Kevin Muñoz Forti, Vinit Shanbhag, Jean Camden, Gary Weisman.

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Genetic variation, environment and demography intersect to shape Arabidopsis defense metabolite variation across Europe. Katz E, Li J-J, Jaegle B, Ashkenazy H, Abrahams SR, Bagaza C, Holden S, Pires CJ, Angelovici R, Kliebenstein DJ. eLife; 10:e67784.

Date published: May 1, 2021
Featured in this article: Clement Bagaza, J. Chris Pires, Ruthie Angelovici.

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Nuclear localization of hopa1pss61 is required for effector-triggered immunity. Kang H, Nguyen Q-M, Iswanto ABB, Hong JC, Bhattacharjee S, Gassmann W, Kim SH. Plants; 10(5):888.

Date published: May 1, 2021
Featured in this article: Walter Gassmann.

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Diazotrophic bacteria and their mechanisms to interact and benefit cereals. Silva Pankievicz VC, do Amaral FP, Ané J-M, Stacey G. Molecular Plant-Microbe Interactions; 34(5):491-498.

Date published: May 1, 2021
Featured in this article: Gary Stacey.

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Mass Spectrometry Imaging of Bio-oligomer Polydispersity in Plant Tissues by Laser Desorption Ionization from Silicon Nanopost Arrays. Samarah LZ, Tran TH, Stacey G, Vertes A. Angewandte Chemie - International Edition; 60(16):9071-9077.

Date published: April 12, 2021
Featured in this article: Gary Stacey.

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Genes derived from ancient polyploidy have higher genetic diversity and are associated with domestication in Brassica rapa. Qi X, An H, Hall TE, Di C, Blischak PD, McKibben MTW, Hao Y, Conant GC, Pires JC, Barker MS. New Phytologist; 230(1):372-386.

Date published: April 1, 2021
Featured in this article: Hong An, J. Chris Pires.

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Replaying the evolutionary tape to investigate subgenome dominance in allopolyploid Brassica napus. Bird KA, Niederhuth CE, Ou S, Gehan M, Pires JC, Xiong Z, VanBuren R, Edger PP. New Phytologist; 230(1):354-371.

Date published: April 1, 2021
Featured in this article: J. Chris Pires.

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Feralization: Confronting the Complexity of Domestication and Evolution. Mabry ME, Rowan TN, Pires JC, Decker JE. Trends in Genetics; 37(4):302-305.

Date published: April 1, 2021
Featured in this article: J. Chris Pires.

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Soybean transporter database: A comprehensive database for identification and exploration of natural variants in soybean transporter genes. Deshmukh R, Rana N, Liu Y, Zeng S, Agarwal G, Sonah H, Varshney R, Joshi T, Patil GB, Nguyen HT. Physiologia Plantarum; 171(4):756-770.

Date published: April 1, 2021
Featured in this article: Shuai Zeng, Trupti Joshi.

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A medicago truncatula metabolite atlas enables the visualization of differential accumulation of metabolites in root tissues. Kranawetter C, Zeng S, Joshi T, Sumner LW. Metabolites; 11(4):238.

Date published: April 1, 2021
Featured in this article: Clayton Kranawetter, Shuai Zeng, Trupti Joshi, Lloyd Sumner.

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Final Selection of Quality Protein Popcorn Hybrids. Parsons L, Ren Y, Yobi A, Angelovici R, Rodriguez O, Holding DR. Frontiers in Plant Science; 12:658456.

Date published: March 24, 2021
Featured in this article: Abou Yobi, Ruthie Angelovici.

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Draft Genome Sequence of the Putative Endophytic Bacterium Pantoea agglomerans R6, Associated with Lactuca serriola from South Africa. Istain B, Mokgokong PS, Wu R, Mia J, Gokul A, Mendoza-Cozatl D, Plessis MD, Keyster M. Microbiology Resource Announcements; 10(10):e00023-21.

Date published: March 11, 2021
Featured in this article: David Mendoza-Cózatl.

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The Molecular Basis of Kale Domestication: Transcriptional Profiling of Developing Leaves Provides New Insights Into the Evolution of a Brassica oleracea Vegetative Morphotype. Arias T, Niederhuth CE, McSteen P, Pires JC. Frontiers in Plant Science; 12:637115.

Date published: March 5, 2021
Featured in this article: Paula McSteen, J. Chris Pires.

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Exogenous 3,3′-diindolylmethane improves vanadium stress tolerance in brassica napus seedling shoots by modulating antioxidant enzyme activities. Gokul A, Fahiem Carelse M, Niekerk L-A, Klein A, Ludidi N, Mendoza-Cozatl D, Keyster M. Biomolecules; 11(3):1-18.

Date published: March 3, 2021
Featured in this article: David Mendoza-Cózatl.

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Predicting Resolvin D1 Pharmacokinetics in Humans with Physiologically-Based Pharmacokinetic Modeling. Yellepeddi VK, Parashar K, Dean SM, Watt KM, Constance JE, Baker OJ. Clinical and Translational Science; 14(2):683-691.

Date published: March 1, 2021
Featured in this article: Olga Baker.

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Trimers Conjugated to Fibrin Hydrogels Promote Salivary Gland Function. Dos Santos HT, Nam K, Brown CT, Dean SM, Lewis S, Pfeifer CS, Lei P, Petris MJ, Andreadis ST, Baker OJ. Journal of Dental Research; 100(3):268-275.

Date published: March 1, 2021
Featured in this article: Harim Tavares dos Santos, Kihoon Nam, Michael Petris, Olga Baker.

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The Conserved arginine required for avrrps4 processing is also required for recognition of its n-terminal fragment in lettuce. Su J, Nguyen Q-M, Kimble A, Pike SM, Kim SH, Gassmann W. Molecular Plant-Microbe Interactions; 34(3):270-278.

Date published: March 1, 2021
Featured in this article: Jianbin Su, Sharon Pike, Walter Gassmann.

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Cross species multi-omics reveals cell wall sequestration and elevated global transcript abundance as mechanisms of boron tolerance in plants. Wang G, DiTusa SF, Oh D-H, Herrmann AD, Mendoza-Cozatl DG, O'Neill MA, Smith AP, Dassanayake M. New Phytologist; 230:1985-2000.

Date published: February 25, 2021
Featured in this article: David Mendoza-Cózatl.

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Opposing functions of the plant TOPLESS gene family during SNC1-mediated autoimmunity. Garner CM, Spears BJ, Su J, Cseke LJ, Smith SN, Rogan CJ, Gassmann W. PLoS Genetics; 17(2):e1009026.

Date published: February 23, 2021
Featured in this article: Jianbin Su, Leland Cseke, Walter Gassmann.

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Plasmodesmata-localized proteins and ROS orchestrate light-induced rapid systemic signaling in Arabidopsis. Fichman Y, Myers RJ Jr, Grant DG, Mittler R. Science Signaling; 14(671):eabf0322.

Date published: February 23, 2021
Featured in this article: Yosef Fichman, Ronald Jr. Myers, Ron Mittler.

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The mitochondrial localized CISD-3.1/CISD-3.2 proteins are required to maintain normal germline structure and function in Caenorhabditis elegans. King SD, Gray CF, Song L, Mittler R, Padilla PA. PLoS ONE; 16(2):e0245174.

Date published: February 1, 2021
Featured in this article: Ron Mittler.

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Copper metabolism as a unique vulnerability in cancer. Shanbhag VC, Gudekar N, Jasmer K, Papageorgiou C, Singh K, Petris MJ. Biochimica et Biophysica Acta - Molecular Cell Research; 1868(2):118893.

Date published: February 1, 2021
Featured in this article: Vinit Shanbhag, Nikita Gudekar, Kimberly Jasmer, Kamlendra Singh, Michael Petris.

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Chromosome inheritance and meiotic stability in allopolyploid Brassica napus. Xiong Z, Gaeta RT, Edger PP, Cao Y, Zhao K, Zhang S, Chris Pires J. G3: Genes, Genomes, Genetics; 11(2):jkaa011.

Date published: February 1, 2021
Featured in this article: J. Chris Pires.

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Short-duration splice promoting compound enables a tunable mouse model of spinal muscular atrophy. Rietz A, Hodgetts KJ, Lusic H, Quist KM, Osman EY, Lorson CL, Androphy EJ. Life Science Alliance; 4(1):e202000889.

Date published: January 1, 2021
Featured in this article: Christian Lorson.

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Meta-analysis of drought and heat stress combination impact on crop yield and yield components. Cohen I, Zandalinas SI, Huck C, Fritschi FB, Mittler R. Physiologia Plantarum; 171(1):66-76.

Date published: January 1, 2021
Featured in this article: Ron Mittler.

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Integration of reactive oxygen species and hormone signaling during abiotic stress. Devireddy AR, Zandalinas SI, Fichman Y, Mittler R. Plant Journal; 105(2):459-476.

Date published: January 1, 2021
Featured in this article: Yosef Fichman, Ron Mittler.

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Coronavirus helicases: attractive and unique targets of antiviral drug-development and therapeutic patents. Spratt AN, Gallazzi F, Quinn TP, Lorson CL, Sönnerborg A, Singh K. Expert Opinion on Therapeutic Patents; 31(4):339-350.

Date published: January 1, 2021
Featured in this article: Fabio Gallazzi, Thomas Quinn, Christian Lorson, Kamlendra Singh.

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Evolution, correlation, structural impact and dynamics of emerging SARS-CoV-2 variants. Spratt AN, Kannan SR, Woods LT, Weisman GA, Quinn TP, Lorson CL, Sönnerborg A, Byrareddy SN, Singh K. Computational and Structural Biotechnology Journal; 19:3799-3809.

Date published: January 1, 2021
Featured in this article: Lucas Woods, Gary Weisman, Thomas Quinn, Christian Lorson, Kamlendra Singh.

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Multi-Cloud Performance and Security Driven Federated Workflow Management. Dickinson M, Debroy S, Calyam P, Valluripally S, Zhang Y, Antequera RB, Joshi T, White T, Xu D. IEEE Transactions on Cloud Computing; 9(1):240-257.

Date published: January 1, 2021
Featured in this article: Trupti Joshi, Dong Xu.

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Application of SNPViz v2.0 using next-generation sequencing data sets in the discovery of potential causative mutations in candidate genes associated with phenotypes. Zeng S, Škrabišová M, Lyu Z, Chan YO, Dietz N, Bilyeu K, Joshi T. International Journal of Data Mining and Bioinformatics; 25(1-2):65-85.

Date published: January 1, 2021
Featured in this article: Shuai Zeng, Zhen Lyu, Yen On Chan, Trupti Joshi.

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2020

CRISPR/Cas9-Mediated Knockout of Galactinol Synthase-Encoding Genes Reduces Raffinose Family Oligosaccharide Levels in Soybean Seeds. Le H, Nguyen NH, Ta DT, Le TNT, Bui TP, Le NT, Nguyen CX, Rolletschek H, Stacey G, Stacey MG, Pham NB, Do PT, Chu HH. Frontiers in Plant Science; 11:612942.

Date published: December 17, 2020
Featured in this article: Gary Stacey, Minviluz (Bing) Stacey.

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A multiomics discriminatory analysis approach to identify drought-related signatures in maize nodal roots. Sen S, McCubbin T, King SK, Greeley LA, Zeng S, Baker C, Mertz R, Niehues ND, Stemmle JT, Fristchi FB, Braun D, Peck SC, Oliver MJ, Sharp RE, Joshi T. Proceedings - 2020 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2020; 1856-1861.

Date published: December 16, 2020
Featured in this article: Sidharth Sen, Laura Greeley, Shuai Zeng, Scott Peck, Trupti Joshi.

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SNPViz v2.0: A web-based tool for enhanced haplotype analysis using large scale resequencing datasets and discovery of phenotypes causative gene using allelic variations. Zeng S, Skrabisova M, Lyu Z, Chan YO, Bilyeu K, Joshi T. Proceedings - 2020 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2020; 1408-1415.

Date published: December 16, 2020
Featured in this article: Shuai Zeng, Zhen Lyu, Yen On Chan, Trupti Joshi.

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A Formative Usability Study to Improve Prescriptive Systems for Bioinformatics Big Data. Singh K, Li S, Jahnke I, Pandey A, Lyu Z, Joshi T, Calyam P. Proceedings - 2020 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2020; 735-742.

Date published: December 16, 2020
Featured in this article: Kamlendra Singh, Zhen Lyu, Trupti Joshi.

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Cell Sheets Restore Secretory Function in Wounded Mouse Submandibular Glands. Dos Santos HT, Kim K, Okano T, Camden JM, Weisman GA, Baker OJ, Nam K. Cells; 9(12).

Date published: December 9, 2020
Featured in this article: Harim Tavares dos Santos, Jean Camden, Gary Weisman, Olga Baker, Kihoon Nam.

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Leaping into the unknown world of sporisorium scitamineum candidate effectors. Teixeira-Silva NS, Schaker PDC, Rody HVS, Maia T, Garner CM, Gassmann W, Monteiro-Vitorello CB. Journal of Fungi; 6(4):1-26.

Date published: December 1, 2020
Featured in this article: Walter Gassmann.

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Infectivity of SARS-CoV-2: there Is Something More than D614G?. Kannan SR, Spratt AN, Quinn TP, Heng X, Lorson CL, Sönnerborg A, Byrareddy SN, Singh K. Journal of Neuroimmune Pharmacology; 15(4):574-577.

Date published: December 1, 2020
Featured in this article: Thomas Quinn, Christian Lorson, Kamlendra Singh.

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Metallothioneins regulate ATP7A trafficking and control cell viability during copper deficiency and excess. Gudekar N, Shanbhag V, Wang Y, Ralle M, Weisman GA, Petris MJ. Scientific Reports; 10(1):7856.

Date published: December 1, 2020
Featured in this article: Nikita Gudekar, Vinit Shanbhag, Gary Weisman, Michael Petris.

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Developmental exposure of California mice to endocrine disrupting chemicals and potential effects on the microbiome-gut-brain axis at adulthood. Kaur S, Sarma SJ, Marshall BL, Liu Y, Kinkade JA, Bellamy MM, Mao J, Helferich WG, Schenk AK, Bivens NJ, Lei Z, Sumner LW, Bowden JA, Koelmel JP, Joshi T, Rosenfeld CS. Scientific Reports; 10(1):10902.

Date published: December 1, 2020
Featured in this article: Saurav Sarma, Jessica Kinkade, Jiude Mao, Nathan Bivens, Zhentian Lei, Lloyd Sumner, Trupti Joshi.

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Author Correction: Developmental exposure of California mice to endocrine disrupting chemicals and potential effects on the microbiome-gut-brain axis at adulthood (Scientific Reports, (2020), 10, 1, (10902), 10.1038/s41598-020-67709-9). Kaur S, Sarma SJ, Marshall BL, Liu Y, Kinkade JA, Bellamy MM, Mao J, Helferich WG, Schenk AK, Bivens NJ, Lei Z, Sumner LW, Bowden JA, Koelmel JP, Joshi T, Rosenfeld CS. Scientific Reports; 10(1):12524.

Date published: December 1, 2020
Featured in this article: Saurav Sarma, Jessica Kinkade, Jiude Mao, Nathan Bivens, Zhentian Lei, Lloyd Sumner, Trupti Joshi.

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Increased HIV in Greater Kinshasa Urban Health Zones: Democratic Republic of Congo (2017–2018). Pour M, James L, Singh K, Mampunza S, Baer F, Scott JA, Berg MG, Rodgers MA, Cloherty GA, Hackett J Jr, McArthur CP. AIDS Research and Therapy; 17(1):67.

Date published: December 1, 2020
Featured in this article: Kamlendra Singh.

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Selective Enrichment Coupled with Proteomics to Identify S-Acylated Plasma Membrane Proteins in Arabidopsis. Zhou L, Zhou M, Gritsenko MA, Stacey G. Current Protocols In Plant Biology; 5(4):e20119.

Date published: December 1, 2020
Featured in this article: Gary Stacey.

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Genome-wide association analysis of the strength of the MAMP-elicited defense response and resistance to target leaf spot in sorghum. Samira R, Kimball JA, Samayoa LF, Holland JB, Jamann TM, Brown PJ, Stacey G, Balint-Kurti PJ. Scientific Reports; 10(1):20817.

Date published: December 1, 2020
Featured in this article: Gary Stacey.

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Light spectra affect the in vitro shoot development of Cedrela fissilis Vell. (Meliaceae) by changing the protein profile and polyamine contents. Oliveira TDR, Aragão VPM, Moharana KC, Fedosejevs E, do Amaral FP, Sousa KR, Thelen JJ, Venâncio TM, Silveira V, Santa-Catarina C. Biochimica et Biophysica Acta - Proteins and Proteomics; 1868(12):140529.

Date published: December 1, 2020
Featured in this article: Jay Thelen.

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Docking of acetyl-CoA carboxylase to the plastid envelope membrane attenuates fatty acid production in plants. Ye Y, Nikovics K, To A, Lepiniec L, Fedosejevs ET, Van Doren SR, Baud S, Thelen JJ. Nature Communications; 11(1):6191.

Date published: December 1, 2020
Featured in this article: Jay Thelen.

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Recommender-as-a-service with chatbot guided domain-science knowledge discovery in a science gateway. Vekaria K, Calyam P, Sivarathri SS, Wang S, Zhang Y, Pandey A, Chen C, Xu D, Joshi T, Nair S. Concurrency Computation; 33:e6080.

Date published: November 11, 2020
Featured in this article: Dong Xu, Trupti Joshi.

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Utility of Proteomics in Emerging and Re-Emerging Infectious Diseases Caused by RNA Viruses. Sperk M, Van Domselaar R, Rodriguez JE, Mikaeloff F, Sá Vinhas B, Saccon E, Sönnerborg A, Singh K, Gupta S, Végvári Á, Neogi U. Journal of Proteome Research; 19(11):4259-4274.

Date published: November 6, 2020
Featured in this article: Kamlendra Singh.

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Phytochrome B is required for systemic stomatal responses and reactive oxygen species signaling during light stress. Devireddy AR, Liscum E, Mittler R. Plant Physiology; 184(3):1563-1572.

Date published: November 3, 2020
Featured in this article: Ron Mittler.

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Genomic prediction informed by biological processes expands our understanding of the genetic architecture underlying free amino acid traits in dry arabidopsis seeds. Turner-Hissong SD, Bird KA, Lipka AE, King EG, Beissinger TM, Angelovici R. G3: Genes, Genomes, Genetics; 10(11):4227-4239.

Date published: November 1, 2020
Featured in this article: Ruthie Angelovici.

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2′-fluoro-modified pyrimidines enhance affinity of RNA oligonucleotides to HIV-1 reverse transcriptase. Gruenke, PR, Alam, KK, Singh K, Burke DH. RNA; 26(11):1667-1679.

Date published: November 1, 2020
Featured in this article: Paige Gruenke, Kamlendra Singh, Donald Burke-Agüero.

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Heme oxygenase promotes B-Raf-dependent melanosphere formation. Jasmer KJ, Hou J, Mannino P, Cheng J, Hannink M. Pigment Cell and Melanoma Research; 33(6):850-868.

Date published: November 1, 2020
Featured in this article: Kimberly Jasmer, Mark Hannink.

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The balancing act of NEET proteins: Iron, ROS, calcium and metabolism. Nechushtai R, Karmi O, Zuo K, Marjault H-B, Darash-Yahana M, Sohn Y-S, King SD, Zandalinas SI, Carloni P, Mittler R. Biochimica et Biophysica Acta - Molecular Cell Research; 1867(11):118805.

Date published: November 1, 2020
Featured in this article: Ron Mittler.

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High temperatures modify plant responses to abiotic stress conditions. Balfagón D, Zandalinas SI, Mittler R, Gómez-Cadenas A. Physiologia Plantarum; 170(3):335-344.

Date published: November 1, 2020
Featured in this article: Ron Mittler.

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Vascular bundles mediate systemic reactive oxygen signaling during light stress. Zandalinas SI, Fichman Y, Mittler R. Plant Cell; 32(11):3425-3435.

Date published: November 1, 2020
Featured in this article: Yosef Fichman, Ron Mittler.

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Correction: Stuckel, et al.; Enhanced CXCR4 expression associates with increased gene body 5-hydroxymethylcytosine modification but not decreased promoter methylation in colorectal cancer. (Cancers 2020, 12, 539). Stuckel AJ, Zhang W, Zhang X, Zeng S, Dougherty U, Mustafi, Zhang Q, Perreand E, Khare T, Joshi T, West-Szymanski DC, Bissonnette M, Khare S. Cancers; 12(11):1-3.

Date published: November 1, 2020
Featured in this article: Shuai Zeng, Trupti Joshi.

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The NS1 protein of the parvovirus MVM Aids in the localization of the viral genome to cellular sites of DNA damage. Majumder K, Boftsi M, Whittle FB, Wang J, Fuller MS, Joshi T, Pintel DJ. PLoS Pathogens; 16(10):e1009002.

Date published: October 16, 2020
Featured in this article: Maria Boftsi, Juexin Wang, Trupti Joshi.

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Optimized Pseudotyping Conditions for the SARS-COV-2 Spike Glycoprotein. Johnson MC, Lyddon TD, Suarez R, Salcedo B, LePique M, Graham M, Ricana C, Robinson C, Ritter DG. Journal of Virology; 94(21):e01062-20.

Date published: October 14, 2020
Featured in this article: Marc Johnson, Terri Lyddon.

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Aptamers with Tunable Affinity Enable Single-Molecule Tracking and Localization of Membrane Receptors on Living Cancer Cells. Delcanale P, Porciani D, Pujals S, Jurkevich A, Chetrusca A, Tawiah KD, Burke DH, Albertazzi L. Angewandte Chemie - International Edition; 59(42):18546-18555.

Date published: October 12, 2020
Featured in this article: David Porciani, Alexander Jurkevich, Donald Burke-Agüero.

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Deletion of maize RDM4 suggests a role in endosperm maturation as well as vegetative and stress-responsive growth. Jia S, Yobi A, Naldrett MJ, Alvarez S, Angelovici R, Zhang C, Holding DR. Journal of Experimental Botany; 71(19):5880-5895.

Date published: October 7, 2020
Featured in this article: Abou Yobi, Ruthie Angelovici.

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Label-Free Quantitative Phosphoproteomics Reveals Signaling Dynamics Involved in Embryogenic Competence Acquisition in Sugarcane. Almeida FA, Passamani LZ, Santa-Catarina C, Mooney BP, Thelen JJ, Silveira V. Journal of Proteome Research; 19(10):4145-4157.

Date published: October 2, 2020
Featured in this article: Brian Mooney, Jay Thelen.

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MYB30 orchestrates systemic reactive oxygen signaling and plant acclimation. Fichman Y, Zandalinas SI, Sengupta S, Burks D, Myers RJ Jr, Azad RK, Mittler R. Plant Physiology; 184(2):666-675.

Date published: October 1, 2020
Featured in this article: Yosef Fichman, Ron Mittler.

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Noninvasive Live ROS Imaging of Whole Plants Grown in Soil. Fichman Y, Mittler R. Trends in Plant Science; 25(10):1052-1053.

Date published: October 1, 2020
Featured in this article: Yosef Fichman, Ron Mittler.

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P2Y2 receptors mediate nucleotide-induced EGFR phosphorylation and stimulate proliferation and tumorigenesis of head and neck squamous cell carcinoma cell lines. Woods LT, Jasmer KJ, Muñoz Forti K, Shanbhag VC, Camden JM, Erb L, Petris MJ, Weisman GA. Oral Oncology; 109:104808.

Date published: October 1, 2020
Featured in this article: Lucas Woods, Kimberly Jasmer, Kevin Muñoz Forti, Vinit Shanbhag, Jean Camden, Michael Petris, Gary Weisman.

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FMO1 Is Involved in Excess Light Stress-Induced Signal Transduction and Cell Death Signaling. Czarnocka W, Fichman Y, Bernacki M, Różańska E, Sańko-Sawczenko I, Mittler R, Karpiński S. Cells; 9(10).

Date published: September 24, 2020
Featured in this article: Yosef Fichman, Ron Mittler.

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AAV9-DOK7 gene therapy reduces disease severity in Smn2B/- SMA model mice. Kaifer KA, Villalón E, Smith CE, Simon ME, Marquez J, Hopkins AE, Morcos TI, Lorson CL. Biochemical and Biophysical Research Communications; 530(1):107-114.

Date published: September 10, 2020
Featured in this article: Caley Smith, Christian Lorson.

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HAPPI GWAS: Holistic analysis with pre- And post-integration GWAS. Slaten ML, Chan YO, Shrestha V, Lipka AE, Angelovici R. Bioinformatics; 36(17):4655-4657.

Date published: September 1, 2020
Featured in this article: Yen On Chan, Marianne Slaten, Ruthie Angelovici.

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Primate lentiviruses require Inositol hexakisphosphate (IP6) or inositol pentakisphosphate (IP5) for the production of viral particles. Ricana CL, Johnson MC, Lyddon TD, Dick RA. PLoS Pathogens; 16(8):e1008646.

Date published: August 1, 2020
Featured in this article: Marc Johnson, Terri Lyddon.

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Coordinated systemic stomatal responses in soybean. Zandalinas SI, Cohen IH, Fritschi FB, Mittler R. Plant Physiology; 183(4):1428-1431.

Date published: August 1, 2020
Featured in this article: Ron Mittler.

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Phylogeny and multiple independent whole-genome duplication events in the Brassicales. Mabry ME, Brose JM, Blischak PD, Sutherland B, Dismukes WT, Bottoms CA, Edger PP, Washburn JD, An H, Hall JC, McKain MR, Al-Shehbaz I, Barker MS, Schranz ME, Conant GC, Pires JC. American Journal of Botany; 107(8):1148-1164.

Date published: August 1, 2020
Featured in this article: Hong An, J. Chris Pires.

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Evolution of Lomandroideae: Multiple origins of polyploidy and biome occupancy in Australia. Gunn BF, Murphy DJ, Walsh NG, Conran JG, Pires JC, Macfarlane TD, Birch JL. Molecular Phylogenetics and Evolution; 149:106836.

Date published: August 1, 2020
Featured in this article: J. Chris Pires.

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Upregulated proteoglycan-related signaling pathways in fluid flow shear stress-treated podocytes. Srivastava T, Joshi T, Jiang Y, Heruth DP, Rezaiekhaligh MH, Novak J, Staggs VS, Alon US, Garola RE, El-Meanawy A, McCarthy ET, Zhou J, Boinpelly VS, Sharma R, Savin VJ, Sharma M. American Journal of Physiology - Renal Physiology; 319(2):F312-F322.

Date published: August 1, 2020
Featured in this article: Trupti Joshi, Yuexu Jiang.

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Metabolomic profiling of wild-type and mutant soybean root nodules using laser-ablation electrospray ionization mass spectrometry reveals altered metabolism. Agtuca BJ, Stopka SA, Evans S, Samarah L, Liu Y, Xu D, Stacey MG, Koppenaal DW, Paša-Tolić L, Anderton CR, Vertes A, Stacey G. Plant Journal; 103(5):1937-1958.

Date published: August 1, 2020
Featured in this article: Gary Stacey.

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Proteomic and bioinformatic profiling of transporters in higher plant mitochondria. Møller IM, Shyama Prasad Rao R, Jiang Y, Thelen JJ, Xu D. Biomolecules; 10(8):1-13.

Date published: August 1, 2020
Featured in this article: Jay Thelen, Dong Xu.

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The BADC and BCCP subunits of chloroplast acetyl-CoA carboxylase sense the pH changes of the light-dark cycle. Ye Y, Fulcher YG, Sliman DJ, Day MT, Schroeder MJ, Koppisetti RK, Bates PD, Thelen JJ, van Doren SR. Journal of Biological Chemistry; 295(29):9901-9916.

Date published: July 17, 2020
Featured in this article: Jay Thelen.

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Untangling the ties that bind different systemic signals in plants. Fichman Y, Zandalinas SI, Mittler R. Science Signaling; 13(640):eabb9505.

Date published: July 14, 2020
Featured in this article: Yosef Fichman, Ron Mittler.

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Current status of the multinational Arabidopsis community. Parry G, Provart NJ, Brady SM, Uzilday B, Adams K, Araújo W, Aubourg S, Baginsky S, Bakker E, Bärenfaller K, Batley J, Beale M, Beilstein M, Belkhadir Y, Mendel G, Berardini T, Bergelson J, Blanco-Herrera F, Brady S, Braun H-P, Briggs S, Brownfield L, Cardarelli M, Castellanos-Uribe M, Coruzzi G, Dassanayake M, De Jaeger G, Dilkes B, Doherty C, Ecker J, Edger P, Edwards D, El Kasmi F, Eriksson M, Exposito-Alonso M, Falter-Braun P, Fernie A, Ferro M, Fiehn O, Friesner J, Greenham K, Guo Y, Hamann T, Hancock A, Hauser M-T, Heazlewood J, Ho C-H, Hõrak H, Huala E, Hwang I, Iuchi S, Jaiswal P, Jakobson L, Jiang Y, Jiao Y, Jones A, Kadota Y, Khurana J, Kliebenstein D, Knee E, Kobayashi M, Koch M, Krouk G, Larson T, Last R, Lepiniec L, Li S, Lurin C, Lysak M, Maere S, Malinowski R, Maumus F, May S, Mayer K, Mendoza-Cozatl D, Mendoza-Poudereux I, Micol JL, Millar H, Mock H-P, Mukhtar K, Mukhtar S, Murcha M, Nakagami H, Nakamura Y, Nicolov L, Nikolau B, Nowack M, Nunes-Nesi A, Palmgren M, Parry G, Patron N, Peck S, Pedmale U, Perrot-Rechenmann C, Pieruschka R, Pío-Beltrán J, Pires JC, Provart N, Rajjou L, Reiser L, Rhee S, Rigas S, Rolland N, Romanowski A, Savaldi-Goldstein S, Schmitz R, Schulze W, Seki M, Shimizu KK, Slotkin K, Small I, Somers D, Sozzani R, Spillane C, Srinivasan R, Taylor N, Tello-Ruiz M-K, Thelen J, Tohge T, Town C, Toyoda T, Uzilday B, Walley J, Ware D, Weckwerth W, Whitelegge J, Wienkoop S, Wright C, Wrzaczek M, Yamazaki M, Yanovsky M, Žárský V, Zhong X, Van De Peer Y, Van Wijk K, Von Gillhaussen P, The Multinational Arabidopsis Steering Committee. Plant Direct; 4(7):e00248.

Date published: July 1, 2020
Featured in this article: David Mendoza-Cózatl, Scott Peck, J. Chris Pires, Jay Thelen.

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Arabidopsis lectin receptor kinase P2K2 is a second plant receptor for extracellular atp and contributes to innate immunity. Pham AQ, Cho S-H, Nguyen CT, Stacey G. Plant Physiology; 183(3):1364-1375.

Date published: July 1, 2020
Featured in this article: Gary Stacey.

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Protein Precipitation to Remove Carbohydrates that Interfere in Protein-Bound Tryptophan Quantification in Soybean Seeds. Lei Z, Kumar S, Sarma SJ, Kumar R, Sumner BW, Stacey MG, Sumner LW. Journal of Analysis and Testing; 4(3):238-247.

Date published: July 1, 2020
Featured in this article: Zhentian Lei, Saurav Sarma, Barbara Sumner, Minviluz (Bing) Stacey, Lloyd Sumner.

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Integration of genomics, metagenomics, and metabolomics to identify interplay between susceptibility alleles and microbiota in adenoma initiation. Moskowitz JE, Doran AG, Lei Z, Busi SB, Hart ML, Franklin CL, Sumner LW, Keane TM, Amos-Landgraf JM. BMC Cancer; 20(1):600.

Date published: June 29, 2020
Featured in this article: Zhentian Lei, Lloyd Sumner.

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Production and Selection of Quality Protein Popcorn Hybrids Using a Novel Ranking System and Combining Ability Estimates. Parsons L, Ren Y, Yobi A, Hurst P, Angelovici R, Rodriguez O, Holding DR. Frontiers in Plant Science; 11:698.

Date published: June 23, 2020
Featured in this article: Abou Yobi, Ruthie Angelovici.

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Minor snRNA gene delivery improves the loss of proprioceptive synapses on SMA motor neurons. Osman EY, van Alstyne M, Yen P-F, Lotti F, Feng Z, Ling KKY, Ko C-P, Pellizzoni L, Lorson CL. JCI Insight; 5(12):e130574.

Date published: June 18, 2020
Featured in this article: Christian Lorson.

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CRISPR/Cas9-Based Gene Editing Using Egg Cell-Specific Promoters in Arabidopsis and Soybean. Zheng N, Li T, Dittman JD, Su J, Li R, Gassmann W, Peng D, Whitham SA, Liu S, Yang B. Frontiers in Plant Science; 11:800.

Date published: June 16, 2020
Featured in this article: Jianbin Su, Riqing Li, Walter Gassmann, Bing Yang.

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Systemic signaling during abiotic stress combination in plants. Zandalinas SI, Fichman Y, Devireddy AR, Sengupta S, Azad RK, Mittler R. Proceedings of the National Academy of Sciences of the United States of America; 117(24):13810-13820.

Date published: June 16, 2020
Featured in this article: Yosef Fichman, Ron Mittler.

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Genomic Origin and Diversification of the Glucosinolate MAM Locus. Abrahams RS, Pires JC, Schranz ME. Frontiers in Plant Science; 11:711.

Date published: June 4, 2020
Featured in this article: J. Chris Pires.

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MGWAS uncovers Gln-glucosinolate seed-specific interaction and its role in metabolic homeostasis. Slaten ML, Yobi A, Bagaza C, Chan YO, Shrestha V, Holden S, Katz E, Kanstrup C, Lipka AE, Kliebenstein DJ, Nour-Eldin HH, Angelovici R. Plant Physiology; 183(2):483-500.

Date published: June 1, 2020
Featured in this article: Marianne Slaten, Abou Yobi, Clement Bagaza, Yen On Chan, Ruthie Angelovici.

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Sex-mediated elevation of the specialized pro-resolving lipid mediator levels in a Sjögren’s syndrome mouse model. Parashar K, Schulte F, Hardt M, Baker OJ. FASEB Journal; 34(6):7733-7744.

Date published: June 1, 2020
Featured in this article: Olga Baker.

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Rapid systemic signaling during abiotic and biotic stresses: is the ROS wave master of all trades?. Fichman Y, Mittler R. Plant Journal; 102(5):887-896.

Date published: June 1, 2020
Featured in this article: Yosef Fichman, Ron Mittler.

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Single-Cell Metabolic Profiling: Metabolite Formulas from Isotopic Fine Structures in Heterogeneous Plant Cell Populations. Samarah LZ, Khattar R, Tran TH, Stopka SA, Brantner CA, Parlanti P, Veličković D, Shaw JB, Agtuca BJ, Stacey G, Paša-Tolić L, Tolić N, Anderton CR, Vertes A. Analytical Chemistry; 92(10):7289-7298.

Date published: May 19, 2020
Featured in this article: Gary Stacey.

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In Vivo Chemical Analysis of Plant Sap from the Xylem and Single Parenchymal Cells by Capillary Microsampling Electrospray Ionization Mass Spectrometry. Samarah LZ, Tran TH, Stacey G, Vertes A. Analytical Chemistry; 92(10):7299-7306.

Date published: May 19, 2020
Featured in this article: Gary Stacey.

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Elesclomol alleviates Menkes pathology and mortality by escorting Cu to cuproenzymes in mice. Guthrie LM, Soma S, Yuan S, Silva A, Zulkifli M, Snavely TC, Greene HF, Nunez E, Lynch B, de Ville C, Shanbhag V, Lopez FR, Acharya A, Petris MJ, Kim B-E, Gohil VM, Sacchettini JC. Science; 368(6491):620-625.

Date published: May 8, 2020
Featured in this article: Vinit Shanbhag, Michael Petris.

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The complex response of free and bound amino acids to water stress during the seed setting stage in Arabidopsis. Yobi A, Bagaza C, Batushansky A, Shrestha V, Emery ML, Holden S, Turner-Hissong S, Miller ND, Mawhinney TP, Angelovici R. Plant Journal; 102(4):838-855.

Date published: May 1, 2020
Featured in this article: Abou Yobi, Clement Bagaza, Ruthie Angelovici.

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Adaptive responses of amino acid metabolism to the combination of desiccation and low nitrogen availability in Sporobolus stapfianus. Yobi A, Batushansky A, Oliver MJ, Angelovici R. Planta; 249(5):1535-1549.

Date published: May 1, 2020
Featured in this article: Abou Yobi, Ruthie Angelovici.

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Sex-dependent Regeneration Patterns in Mouse Submandibular Glands. Brown CT, Nam K, Zhang Y, Qiu Y, Dean SM, Dos Santos HT, Lei P, Andreadis ST, Baker OJ. Journal of Histochemistry and Cytochemistry; 68(5):305-318.

Date published: May 1, 2020
Featured in this article: Kihoon Nam, Harim Tavares dos Santos, Olga Baker.

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Mapping the metal-catalytic site of a zinc-activated phytochelatin synthase. García-García JD, Sánchez-Thomas R, Saavedra E, Fernández-Velasco DA, Romero-Romero S, Casanova-Figueroa KI, Mendoza-Cózatl DG, Moreno-Sánchez R. Algal Research; 47:101890.

Date published: May 1, 2020
Featured in this article: David Mendoza-Cózatl.

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Feasibility of known rna polymerase inhibitors as anti-sars-cov-2 drugs. Neogi U, Hill KJ, Ambikan AT, Heng X, Quinn TP, Byrareddy SN, Sönnerborg A, Sarafianos SG, Singh K. Pathogens; 9(5):320.

Date published: May 1, 2020
Featured in this article: Thomas Quinn, Kamlendra Singh.

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Role of cytosolic, tyrosine-insensitive prephenate dehydrogenase in Medicago truncatula. Schenck CA, Westphal J, Jayaraman D, Garcia K, Wen J, Mysore KS, Ané J-M, Sumner LW, Maeda HA. Plant Direct; 4(5):e00218.

Date published: May 1, 2020
Featured in this article: Lloyd Sumner.

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Multi-targeted trehalose-6-phosphate phosphatase I harbors a novel peroxisomal targeting signal 1 and is essential for flowering and development. Kataya ARA, Elshobaky A, Heidari B, Dugassa N-F, Thelen JJ, Lillo C. Planta; 251(5):98.

Date published: May 1, 2020
Featured in this article: Jay Thelen.

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Can metabolic tightening and expansion of co-expression network play a role in stress response and tolerance?. Fait A, Batushansky A, Shrestha V, Yobi A, Angelovici R. Plant Science; 293:110409.

Date published: April 1, 2020
Featured in this article: Abou Yobi, Ruthie Angelovici.

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Predictive modeling of aspirin-triggered resolvin D1 pharmacokinetics for the study of Sjögren’s syndrome. Yellepeddi VK, Baker OJ. Clinical and Experimental Dental Research; 6(2):225-235.

Date published: April 1, 2020
Featured in this article: Olga Baker.

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EPSIN1 modulates the plasma membrane abundance of FLAGELLIN SENSING2 for effective immune responses. Collins CA, LaMontagne ED, Anderson JC, Ekanayake G, Clarke AS, Bond LN, Salamango DJ, Cornish PV, Peck SC, Heese A. Plant Physiology; 182(4):1762-1775.

Date published: April 1, 2020
Featured in this article: Scott Peck.

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Independent evolution of ancestral and novel defenses in a genus of toxic plants (Erysimum, brassicaceae). Züst T, Strickler SR, Powell AF, Mabry ME, An H, Mirzaei M, York T, Holland CK, Kumar P, Erb M, Petschenka G, Gómez J-M, Perfectti F, Müller C, Pires JC, Mueller LA, Jander G. eLife; 9:e51712.

Date published: April 1, 2020
Featured in this article: Hong An, J. Chris Pires.

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Evolutionary insights into plant breeding. Turner-Hissong SD, Mabry ME, Beissinger TM, Ross-Ibarra J, Pires JC. Current Opinion in Plant Biology; 54:93-100.

Date published: April 1, 2020
Featured in this article: J. Chris Pires.

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Epha7 promotes myogenic differentiation via cell-cell contact. Arnold LL, Cecchini A, Stark DA, Ihnat J, Craigg RN, Carter A, Zino S, Cornelison DDW. eLife; 9:e53689.

Date published: April 1, 2020
Featured in this article: Alessandra 'Lale' Cecchini-Porciani, D Cornelison.

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Identification of health-promoting bioactive phenolics in black walnut using cloud-based metabolomics platform. Vu DC, Park J, Ho K-V, Sumner LW, Lei Z, Greenlief CM, Mooney B, Coggeshall MV, Lin C-H. Journal of Food Measurement and Characterization; 14(2):770-777.

Date published: April 1, 2020
Featured in this article: Lloyd Sumner, Zhentian Lei, Michael Greenlief, Brian Mooney.

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Drug Resistance Mutations Against Protease, Reverse Transcriptase and Integrase Inhibitors in People Living With HIV-1 Receiving Boosted Protease Inhibitors in South Africa. Obasa AE, Mikasi SG, Brado D, Cloete R, Singh K, Neogi U, Jacobs GB. Frontiers in Microbiology; 11:438.

Date published: March 20, 2020
Featured in this article: Kamlendra Singh.

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Binding interface and impact on protease cleavage for an RNA aptamer to HIV-1 reverse transcriptase. Nguyen PDM, Zheng J, Gremminger TJ, Qiu L, Zhang D, Tuske S, Lange MJ, Griffin PR, Arnold E, Chen S-J, Zou X, Heng X, Burke DH. Nucleic Acids Research; 48(5):2709-2722.

Date published: March 18, 2020
Featured in this article: Margaret Lange, Donald Burke-Agüero.

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Engineering the mode of morphogenetic signal presentation to promote branching from salivary gland spheroids in 3D hydrogels. Samuel RZ, Lei P, Nam K, Baker OJ, Andreadis ST. Acta Biomaterialia; 105:121-130.

Date published: March 15, 2020
Featured in this article: Kihoon Nam, Olga Baker.

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From element to development: The power of the essential micronutrient boron to shape morphological processes in plants. Matthes MS, Robil JM, McSteen P. Journal of Experimental Botany; 71(5):1681-1693.

Date published: March 12, 2020
Featured in this article: Jan Lorie Robil, Paula McSteen.

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Signal transduction networks during stress combination. Zandalinas SI, Fritschi FB, Mittler R. Journal of Experimental Botany; 71(5):1734-1741.

Date published: March 12, 2020
Featured in this article: Ron Mittler.

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Plant signaling in biotic and abiotic stress. Peck S, Mittler R. Journal of Experimental Botany; 71(5):1649-1651.

Date published: March 12, 2020
Featured in this article: Scott Peck, Ron Mittler.

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The role of microRNAs in the legume-Rhizobium nitrogen-fixing symbiosis. Hoang NT, Tóth K, Stacey G. Journal of Experimental Botany; 71(5):1668-1680.

Date published: March 12, 2020
Featured in this article: Gary Stacey.

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Correction: Evidence for plant-derived xenomiRs based on a large-scale analysis of public small RNA sequencing data from human samples (PLOS ONE (2019) 14:10 (e0224537) DOI: 10.1371/journal.pone.0224537). Zhao Q, Liu Y, Zhang N, Hu M, Zhang H, Joshi T, Xu D. PLoS ONE; 15(3):e0230146.

Date published: March 11, 2020
Featured in this article: Trupti Joshi, Dong Xu.

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Identification and Quantification of Bioactive Molecules Inhibiting Pro-inflammatory Cytokine Production in Spent Coffee Grounds Using Metabolomics Analyses. Ho K-V, Schreiber KL, Park J, Vo PH, Lei Z, Sumner LW, Brown CR, Lin C-H. Frontiers in Pharmacology; 11:229.

Date published: March 6, 2020
Featured in this article: Zhentian Lei, Lloyd Sumner.

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Bisphenol A and bisphenol S disruptions of the mouse placenta and potential effects on the placenta-brain axis. Mao J, Jain A, Denslow ND, Nouri M-Z, Chen S, Wang T, Zhu N, Koh J, Sarma SJ, Sumner BW, Lei Z, Sumner LW, Bivens NJ, Michael Roberts R, Tuteja G, Rosenfeld CS. Proceedings of the National Academy of Sciences of the United States of America; 117(9):4642-4652.

Date published: March 3, 2020
Featured in this article: Jiude Mao, Saurav Sarma, Barbara Sumner, Zhentian Lei, Lloyd Sumner, Nathan Bivens, Michael Roberts.

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Tumor-cell–macrophage fusion cells as liquid biomarkers and tumor enhancers in cancer. Manjunath Y, Porciani D, Mitchem JB, Suvilesh KN, Avella DM, Kimchi ET, Staveley-o’carroll KF, Burke DH, Li G, Kaifi JT. International Journal of Molecular Sciences; 21(5):1872.

Date published: March 1, 2020
Featured in this article: David Porciani, Donald Burke-Agüero.

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Changes in mammalian copper homeostasis during microbial infection. Culbertson EM, Khan AA, Muchenditsi A, Lutsenko S, Sullivan DJ, Petris MJ, Cormack BP, Culotta VC. Metallomics; 12(3):416-426.

Date published: March 1, 2020
Featured in this article: Aslam Khan, Michael Petris.

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Expression of a dominant-negative AtNEET-H89C protein disrupts iron–sulfur metabolism and iron homeostasis in Arabidopsis. Zandalinas SI, Song L, Sengupta S, McInturf SA, Grant DG, Marjault H-B, Castro-Guerrero NA, Burks D, Azad RK, Mendoza-Cozatl DG, Nechushtai R, Mittler R. Plant Journal; 101(5):1152-169.

Date published: March 1, 2020
Featured in this article: Norma Castro-Guerrero, David Mendoza-Cózatl, Ron Mittler.

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Enhanced CXCR4 expression associates with increased gene body 5-hydroxymethylcytosine modification but not decreased promoter methylation in colorectal cancer. Stuckel AJ, Zhang W, Zhang X, Zeng S, Dougherty U, Mustafi, Zhang Q, Perreand E, Khare T, Joshi T, West-Szymanski DC, Bissonnette M, Khare S. Cancers; 12(3):539.

Date published: March 1, 2020
Featured in this article: Shuai Zeng, Trupti Joshi.

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Nontargeted fecal metabolomics: An emerging tool to probe the role of the gut microbiome in host health. Sarma SJ, Lei Z, Rosenfeld CS, Ericsson A, Sumner LW. Bioanalysis; 12(6):351-353.

Date published: March 1, 2020
Featured in this article: Saurav Sarma, Zhentian Lei, Lloyd Sumner.

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IMPRes-Pro: A high dimensional multiomics integration method for in silico hypothesis generation. Jiang Y, Wang D, Xu D, Joshi T. Methods; 173:16-23.

Date published: February 15, 2020
Featured in this article: Yuexu Jiang, Duolin Wang, Dong Xu, Trupti Joshi.

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Corrigendum: Characterization of the Spatial and Temporal Expression of Two Soybean miRNAs Identifies SCL6 as a Novel Regulator of Soybean Nodulation (Frontiers in Plant Science, (2019), 10, 10.3389/fpls.2019.00475). Hossain MS, Hoang NT, Yan Z, Tóth K, Meyers BC, Stacey G. Frontiers in Plant Science; 10:1692.

Date published: February 12, 2020
Featured in this article: Gary Stacey.

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Assessment of a18f-phenylboronic acid radiotracer for imaging boron in maize. Housh AB, Matthes MS, Gerheart A, Wilder SL, Kil K-E, Schueller M, Guthrie JM, McSteen P, Ferrieri R. International Journal of Molecular Sciences; 21(3):976.

Date published: February 1, 2020
Featured in this article: Paula McSteen.

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Structures of immature EIAV Gag lattices reveal a conserved role for IP6 in lentivirus assembly. Dick RA, Xu C, Morado DR, Kravchuk V, Ricana CL, Lyddon TD, Broad AM, Feathers JR, Johnson MC, Vogt VM, Perilla JR, Briggs JAG, Schur FKM. PLoS Pathogens; 16(1):e1008277.

Date published: January 27, 2020
Featured in this article: Terri Lyddon, Marc Johnson.

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Using Tomato Recombinant Lines to Improve Plant Tolerance to Stress Combination Through a More Efficient Nitrogen Metabolism. Lopez-Delacalle M, Camejo DM, García-Martí M, Nortes PA, Nieves-Cordones M, Martínez V, Rubio F, Mittler R, Rivero RM. Frontiers in Plant Science; 10:1702.

Date published: January 17, 2020
Featured in this article: Ron Mittler.

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Security-aware Resource Brokering for Bioinformatics Workflows across Federated Multi-cloud Infrastructures. Nguyen M, Debroy S, Calyam P, Lyu Z, Joshi T. ACM International Conference Proceeding Series; F165625:3369791.

Date published: January 4, 2020
Featured in this article: Zhen Lyu, Trupti Joshi.

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Proteomic and Metabolomic Analysis of Azospirillum brasilense ntrC Mutant under High and Low Nitrogen Conditions. Kukolj C, Pedrosa FO, De Souza GA, Sumner LW, Lei Z, Sumner B, Do Amaral FP, Juexin W, Trupti J, Huergo LF, Monteiro RA, Valdameri G, Stacey G, De Souza EM. Journal of Proteome Research; 19(1):92-105.

Date published: January 3, 2020
Featured in this article: Lloyd Sumner, Zhentian Lei, Barbara Sumner, Juexin Wang, Trupti Joshi, Gary Stacey.

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Therapeutic peptide delivery: Via aptamer-displaying, disulfide-linked peptide amphiphile micelles. Smith JD, Cardwell LN, Porciani D, Nolla A, Cornelison BT, Schulte MC, Gallazzi F, Burke DH, Daniels MA, Ulery BD. Molecular Systems Design and Engineering; 5(1):269-283.

Date published: January 1, 2020
Featured in this article: David Porciani, Fabio Gallazzi, Donald Burke-Agüero.

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Coordinated and rapid whole-plant systemic stomatal responses. Devireddy AR, Arbogast J, Mittler R. New Phytologist; 225(1):21-25.

Date published: January 1, 2020
Featured in this article: Ron Mittler.

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A revised model for the role of GacS/GacA in regulating type III secretion by Pseudomonas syringae pv. tomato DC3000. O’Malley MR, Chien C-F, Peck SC, Lin N-C, Anderson JC. Molecular Plant Pathology; 21(1):139-144.

Date published: January 1, 2020
Featured in this article: Scott Peck.

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A dynamic programing approach to integrate gene expression data and network information for pathway model generation. Jiang Y, Liang Y, Wang D, Xu D, Joshi T. Bioinformatics; 36(1):169-176.

Date published: January 1, 2020
Featured in this article: Yuexu Jiang, Duolin Wang, Dong Xu, Trupti Joshi.

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Hypothalamic transcriptome of tame and aggressive silver foxes (Vulpes vulpes) identifies gene expression differences shared across brain regions. Rosenfeld CS, Hekman JP, Johnson JL, Lyu Z, Ortega MT, Joshi T, Mao J, Vladimirova AV, Gulevich RG, Kharlamova AV, Acland GM, Hecht EE, Wang X, Clark AG, Trut LN, Behura SK, Kukekova AV. Genes, Brain and Behavior; 19(1):e12614.

Date published: January 1, 2020
Featured in this article: Zhen Lyu, Trupti Joshi, Jiude Mao.

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Mice lacking uterine enhancer of zeste homolog 2 have transcriptomic changes associated with uterine epithelial proliferation. Mesa AM, Mao J, Nanjappa MK, Medrano TI, Tevosian S, Yu F, Kinkade J, Lyu Z, Liu Y, Joshi T, Wang D, Rosenfeld CS, Cooke PS. Physiological Genomics; 52(2):81-95.

Date published: January 1, 2020
Featured in this article: Jiude Mao, Jessica Kinkade, Zhen Lyu, Trupti Joshi, Duolin Wang.

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Inductive inference of gene regulatory network using supervised and semi-supervised graph neural networks. Wang J, Ma A, Ma Q, Xu D, Joshi T. Computational and Structural Biotechnology Journal; 18:3335-3343.

Date published: January 1, 2020
Featured in this article: Juexin Wang, Dong Xu, Trupti Joshi.

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Dysregulation in Akt/mTOR/HIF-1 signaling identified by proteo-transcriptomics of SARS-CoV-2 infected cells. Appelberg S, Gupta S, Akusjärvi SS, Ambikan AT, Mikaeloff F, Saccon E, Végvári Á, Benfeitas R, Sperk M, Ståhlberg M, Krishnan S, Singh K, Penninger JM, Mirazimi A, Neogi U. Emerging Microbes and Infections; 1748-1760.

Date published: January 1, 2020
Featured in this article: Kamlendra Singh.

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In-situ metabolomic analysis of Setaria viridis roots colonized by beneficial endophytic bacteria. Agtuca BJ, Stopka SA, Tuleski TR, Do Amaral FP, Evan S, Liu Y, Xu D, Monteiro RA, Koppenaal DW, Paša-Tolić L, Anderton CR, Vertes A, Stacey G. Molecular Plant-Microbe Interactions; 33(2):272-283.

Date published: January 1, 2020
Featured in this article: Dong Xu, Gary Stacey.

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Herbaspirillum rubrisubalbicans as a phytopathogenic model to study the immune system of Sorghum bicolor. Tuleski TR, Kimball J, Do Amaral FP, Pereira TP, Tadra-Sfeir MZ, De Oliveira Pedrosa F, De Souza EM, Balint-Kurti P, Monteiro RA, Stacey G. Molecular Plant-Microbe Interactions; 33(2):235-246.

Date published: January 1, 2020
Featured in this article: Gary Stacey.

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Generation of a collision cross section library for multi-dimensional plant metabolomics using UHPLC-trapped ion mobility-MS/MS. Schroeder M, Meyer SW, Heyman HM, Barsch A, Sumner LW. Metabolites; 10(1):13.

Date published: January 1, 2020
Featured in this article: Lloyd Sumner.

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Allelopathic potential of rice and identification of published allelochemicals by cloud-based metabolomics platform. Ho TL, Nguyen TTC, Vu DC, Nguyen NY, Nguyen TTT, Phong TNH, Nguyen CT, Lin C-H, Lei Z, Sumner LW, Le VV. Metabolites; 10(6):1-20.

Date published: January 1, 2020
Featured in this article: Zhentian Lei, Lloyd Sumner.

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2019

Knowledge Base Commons (KBCommons) v1.1: A universal framework for multi-omics data integration and biological discoveries. Zeng S, Lyu Z, Narisetti SRK, Xu D, Joshi T. BMC Genomics; 20:947.

Date published: December 20, 2019
Featured in this article: Shuai Zeng, Zhen Lyu, Dong Xu, Trupti Joshi.

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Development of a novel severe mouse model of spinal muscular atrophy with respiratory distress type 1: FVB-nmd. Shababi M, Smith CE, Kacher M, Alrawi Z, Villalón E, Davis D, Bryda EC, Lorson CL. Biochemical and Biophysical Research Communications; 520(2):341-346.

Date published: December 3, 2019
Featured in this article: Caley Smith, Mona Kacher, Christian Lorson.

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Using cell sheets to regenerate mouse submandibular glands. Nam K, Kim K, Dean SM, Brown CT, Davis RS, Okano T, Baker OJ. npj Regenerative Medicine; 4(1):16.

Date published: December 1, 2019
Featured in this article: Kihoon Nam, Olga Baker.

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Diphtheria Toxin A-Resistant Cell Lines Enable Robust Production and Evaluation of DTA-Encoding Lentiviruses. Lange MJ, Lyddon TD, Johnson MC. Scientific Reports; 9(1):8985.

Date published: December 1, 2019
Featured in this article: Margaret Lange, Terri Lyddon, Marc Johnson.

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Functional characterization of SMN evolution in mouse models of SMA. Osman EY, Bolding MR, Villalón E, Kaifer KA, Lorson ZC, Tisdale S, Hao Y, Conant GC, Pires JC, Pellizzoni L, Lorson CL. Scientific Reports; 9(1):9472.

Date published: December 1, 2019
Featured in this article: J. Chris Pires, Christian Lorson.

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Intraperitoneal delivery of a novel drug‐like compound improves disease severity in severe and intermediate mouse models of Spinal Muscular Atrophy. Osman EY, Rietz A, Kline RA, Cherry JJ, Hodgetts KJ, Lorson CL, Androphy EJ. Scientific Reports; 9(1):1633.

Date published: December 1, 2019
Featured in this article: Christian Lorson.

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4-Coumarate 3-hydroxylase in the lignin biosynthesis pathway is a cytosolic ascorbate peroxidase. Barros J, Escamilla-Trevino L, Song L, Rao X, Serrani-Yarce JC, Palacios MD, Engle N, Choudhury FK, Tschaplinski TJ, Venables BJ, Mittler R, Dixon RA. Nature Communications; 10(1):1994.

Date published: December 1, 2019
Featured in this article: Ron Mittler.

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Comparative Phosphoproteomic Analysis Reveals a Decay of ABA Signaling in Barley Embryos during After-Ripening. Ishikawa S, Barrero JM, Takahashi F, Nakagami H, Peck SC, Gubler F, Shinozaki K, Umezawa T. Plant and Cell Physiology; 60(12):2758-2768.

Date published: December 1, 2019
Featured in this article: Scott Peck.

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Adipocyte-specific disruption of ATPase copper transporting α in mice accelerates lipoatrophy. Tao C, Wang Y, Zhao Y, Pan J, Fan Y, Liang X, Cao C, Zhao J, Petris MJ, Li K, Wang Y. Diabetologia; 62(12):2340-2353.

Date published: December 1, 2019
Featured in this article: Michael Petris.

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Transcriptome and organellar sequencing highlights the complex origin and diversification of allotetraploid Brassica napus. An H, Qi X, Gaynor ML, Hao Y, Gebken SC, Mabry ME, McAlvay AC, Teakle GR, Conant GC, Barker MS, Fu T, Yi B, Pires JC. Nature Communications; 10(1):2878.

Date published: December 1, 2019
Featured in this article: Hong An, J. Chris Pires.

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Transcriptomics Analysis Reveals New Insights into the Roles of Notch1 Signaling on Macrophage Polarization. Hans CP, Sharma N, Sen S, Zeng S, Dev R, Jiang Y, Mahajan A, Joshi T. Scientific Reports; 9(1):7999.

Date published: December 1, 2019
Featured in this article: Sidharth Sen, Shuai Zeng, Yuexu Jiang, Trupti Joshi.

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Construction and comparison of three reference-quality genome assemblies for soybean. Valliyodan B, Cannon SB, Bayer PE, Shu S, Brown AV, Ren L, Jenkins J, Chung CYL, Chan T-E, Daum CG, Plott C, Hastie A, Baruch K, Barry KW, Huang W, Patil G, Varshney RK, Hu H, Batley J, Yuan Y, Song Q, Stupar RM, Goodstein DM, Stacey G, Lam H-M, Jackson SA, Schmutz J, Grimwood J, Edwards D, Nguyen HT. Plant Journal; 100(5):1066-1082.

Date published: December 1, 2019
Featured in this article: Gary Stacey.

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Identification of QTL for Target Leaf Spot resistance in Sorghum bicolor and investigation of relationships between disease resistance and variation in the MAMP response. Kimball J, Cui Y, Chen D, Brown P, Rooney WL, Stacey G, Balint-Kurti PJ. Scientific Reports; 9(1):18285.

Date published: December 1, 2019
Featured in this article: Yaya Cui, Gary Stacey.

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Phenotype Prediction and Genome-Wide Association Study Using Deep Convolutional Neural Network of Soybean. Liu Y, Wang D, He F, Wang J, Joshi T, Xu D. Frontiers in Genetics; 10:1091.

Date published: November 22, 2019
Featured in this article: Duolin Wang, Juexin Wang, Trupti Joshi, Dong Xu.

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OnTimeURB: Multi-Cloud Resource Brokering for Bioinformatics Workflows. Pandey A, Lyu Z, Joshi T, Calyam P. Proceedings - 2019 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2019; 466-473.

Date published: November 18, 2019
Featured in this article: Zhen Lyu, Trupti Joshi.

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Mutational Forks: Inferring Deregulated Flow of Signal Transduction Based on Patient-Specific Mutations. Kholod O, Lyu Z, Mitchem J, Tonellato P, Joshi T, Shin D. Proceedings - 2019 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2019; 2063-2068.

Date published: November 18, 2019
Featured in this article: Zhen Lyu, Trupti Joshi.

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AAV9-Stathmin1 gene delivery improves disease phenotype in an intermediate mouse model of spinal muscular atrophy. Villalón E, Kline RA, Smith CE, Lorson ZC, Osman EY, O'day S, Murray LM, Lorson CL. Human Molecular Genetics; 28(22):3742-3754.

Date published: November 15, 2019
Featured in this article: Caley Smith, Christian Lorson.

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Barium chloride injures myofibers through calcium-induced proteolysis with fragmentation of motor nerves and microvessels. Morton AB, Norton CE, Jacobsen NL, Fernando CA, Cornelison DDW, Segal SS. Skeletal Muscle; 9(1):27.

Date published: November 6, 2019
Featured in this article: D Cornelison.

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Genome Editing in Plants: Exploration of Technological Advancements and Challenges. Vats S, Kumawat S, Kumar V, Patil GB, Joshi T, Sonah H, Sharma TR, Deshmukh R. Cells; 8(11).

Date published: November 4, 2019
Featured in this article: Trupti Joshi.

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DORN1/P2K1 and purino-calcium signalling in plants: Making waves with extracellular ATP. Matthus E, Sun J, Wang L, Bhat MG, Mohammad-Sidik AB, Wilkins KA, Leblanc-Fournier N, Legué V, Moulia B, Stacey G, Davies JM. Annals of Botany; 124(7):1227-1242.

Date published: November 1, 2019
Featured in this article: Gary Stacey.

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One thousand plant transcriptomes and the phylogenomics of green plants. Leebens-Mack JH, Barker MS, Carpenter EJ, Deyholos MK, Gitzendanner MA, Graham SW, Grosse I, Li Z, Melkonian M, Mirarab S, Porsch M, Quint M, Rensing SA, Soltis DE, Soltis PS, Stevenson DW, Ullrich KK, Wickett NJ, DeGironimo L, Edger PP, Jordon-Thaden IE, Joya S, Liu T, Melkonian B, Miles NW, Pokorny L, Quigley C, Thomas P, Villarreal JC, Augustin MM, Barrett MD, Baucom RS, Beerling DJ, Benstein RM, Biffin E, Brockington SF, Burge DO, Burris JN, Burris KP, Burtet-Sarramegna V, Caicedo AL, Cannon SB, Çebi Z, Chang Y, Chater C, Cheeseman JM, Chen T, Clarke ND, Clayton H, Covshoff S, Crandall-Stotler BJ, Cross H, dePamphilis CW, Der JP, Determann R, Dickson RC, Di Stilio VS, Ellis S, Fast E, Feja N, Field KJ, Filatov DA, Finnegan PM, Floyd SK, Fogliani B, García N, Gâteblé G, Godden GT, Goh FQY, Greiner S, Harkess A, Heaney JM, Helliwell KE, Heyduk K, Hibberd JM, Hodel RGJ, Hollingsworth PM, Johnson MTJ, Jost R, Joyce B, Kapralov MV, Kazamia E, Kellogg EA, Koch MA, Von Konrat M, Könyves K, Kutchan TM, Lam V, Larsson A, Leitch AR, Lentz R, Li F-W, Lowe AJ, Ludwig M, Manos PS, Mavrodiev E, McCormick MK, McKain M, McLellan T, McNeal JR, Miller RE, Nelson MN, Peng Y, Ralph P, Real D, Riggins CW, Ruhsam M, Sage RF, Sakai AK, Scascitella M, Schilling EE, Schlösser E-M, Sederoff H, Servick S, Sessa EB, Shaw AJ, Shaw SW, Sigel EM, Skema C, Smith AG, Smithson A, Stewart CN Jr, Stinchcombe JR, Szövényi P, Tate JA, Tiebel H, Trapnell D, Villegente M, Wang C-N, Weller SG, Wenzel M, Weststrand S, Westwood JH, Whigham DF, Wu S, Wulff AS, Yang Y, Zhu D, Zhuang C, Zuidof J, Chase MW, Pires JC, Rothfels CJ, Yu J, Chen C, Chen L, Cheng S, Li J, Li R, Li X, Lu H, Ou Y, Sun X, Tan X, Tang J, Tian Z, Wang F, Wang J, Wei X, Xu X, Yan Z, Yang F, Zhong X, Zhou F, Zhu Y, Zhang Y, Ayyampalayam S, Barkman TJ, Nguyen N-P, Matasci N, Nelson DR, Sayyari E, Wafula EK, Walls RL, Warnow T, An H, Arrigo N, Baniaga AE, Galuska S, Jorgensen SA, Kidder TI, Kong H, Lu-Irving P, Marx HE, Qi X, Reardon CR, Sutherland BL, Tiley GP, Welles SR, Yu R, Zhan S, Gramzow L, Theißen G, Wong GK-S, One Thousand Plant Transcriptomes Initiative. Nature; 574(7780):679-685.

Date published: October 31, 2019
Featured in this article: J. Chris Pires, Hong An.

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Jasmonic acid is required for plant acclimation to a combination of high light and heat stress. Balfagón D, Sengupta S, Gómez-Cadenas A, Fritschi FB, Azad RK, Mittler R, Zandalinasc SI. Plant Physiology; 181(4):1668-1682.

Date published: October 8, 2019
Featured in this article: Ron Mittler.

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Multi-cloud performance and security-driven brokering for bioinformatics workflows. Nguyen M, Debroy S, Calyam P, Lyu Z, Joshi T. Proceedings - International Conference on Network Protocols, ICNP; 2019-October:8888071.

Date published: October 7, 2019
Featured in this article: Zhen Lyu, Trupti Joshi.

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AAV9-mediated delivery of miR-23a reduces disease severity in Smn2B/-SMA model mice. Kaifer KA, Villalón E, O'Brien BS, Sison SL, Smith CE, Simon ME, Marquez J, O'Day S, Hopkins AE, Neff R, Rindt H, Ebert AD, Lorson CL. Human Molecular Genetics; 28(19):3199-3210.

Date published: October 1, 2019
Featured in this article: Caley Smith, Christian Lorson.

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Redox-dependent gating of VDAC by mitoNEET. Lipper CH, Stofleth JT, Bai F, Sohn Y-S, Roy S, Mittler R, Nechushtai R, Onuchic JN, Jennings PA. Proceedings of the National Academy of Sciences of the United States of America; 116(40):19924-19929.

Date published: October 1, 2019
Featured in this article: Ron Mittler.

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12-Hydroxy-Jasmonoyl-l-Isoleucine Is an Active Jasmonate That Signals through CORONATINE INSENSITIVE 1 and Contributes to the Wound Response in Arabidopsis. Poudel AN, Holtsclaw RE, Kimberlin A, Sen S, Zeng S, Joshi T, Lei Z, Sumner LW, Singh K, Matsuura H, Koo AJ. Plant and Cell Physiology; 60(10):2152-2166.

Date published: October 1, 2019
Featured in this article: Sidharth Sen, Shuai Zeng, Trupti Joshi, Zhentian Lei, Lloyd Sumner, Kamlendra Singh.

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Correction: Evidence for plant-derived xenomiRs based on a large-scale analysis of public small RNA sequencing data from human samples (PLoS ONE (2019) 13:6 (e0187519) DOI: 10.1371/journal.pone.0187519). Zhao Q, Liu Y, Zhang N, Hu M, Zhang H, Joshi T, Xu D. PLoS ONE; 14(10):e0224537.

Date published: October 1, 2019
Featured in this article: Trupti Joshi, Dong Xu.

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Machine Learning Classifiers for Endometriosis Using Transcriptomics and Methylomics Data. Akter S, Xu D, Nagel SC, Bromfield JJ, Pelch K, Wilshire GB, Joshi T. Frontiers in Genetics; 10:766.

Date published: September 4, 2019
Featured in this article: Dong Xu, Trupti Joshi.

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Early Extracellular ATP Signaling in Arabidopsis Root Epidermis: A Multi-Conductance Process. Wang L, Stacey G, Leblanc-Fournier N, Legué V, Moulia B, Davies JM. Frontiers in Plant Science; 10:1064.

Date published: September 4, 2019
Featured in this article: Gary Stacey.

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Whole-Plant Live Imaging of Reactive Oxygen Species. Fichman Y, Miller G, Mittler R. Molecular Plant; 12(9):1203-1210.

Date published: September 2, 2019
Featured in this article: Yosef Fichman, Ron Mittler.

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Nrf2-inducing and HMG-CoA reductase inhibitory activities of a polyphenol-rich fraction of Guazuma ulmifolia leaves. Sulistiyani S, Falah S, Wahyuni W, Andrianto D, Lelono A, Nurcholis W, Mossine V, Hannink M. Asian Pacific Journal of Tropical Biomedicine; 9(9):389-396.

Date published: September 1, 2019
Featured in this article: Mark Hannink.

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SoyCSN: Soybean context-specific network analysis and prediction based on tissue-specific transcriptome data. Wang J, Hossain MS, Lyu Z, Schmutz J, Stacey G, Xu D, Joshi T. Plant Direct; 3(9):e00167.

Date published: September 1, 2019
Featured in this article: Juexin Wang, Zhen Lyu, Gary Stacey, Dong Xu, Trupti Joshi.

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Ectopic defense gene expression is associated with growth defects in medicago truncatula lignin pathway mutants. Ha CM, Fine D, Bhatia A, Rao X, Martin MZ, Engle NL, Wherritt DJ, Tschaplinski TJ, Sumner LW, Dixon RA. Plant Physiology; 181(1):63-84.

Date published: September 1, 2019
Featured in this article: Lloyd Sumner.

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Keep talking: Crosstalk between iron and sulfur networks fine-tunes growth and development to promote survival under iron limitation. Mendoza-Cózatl DG, Gokul A, Carelse MF, Jobe TO, Long TA, Keyster M. Journal of Experimental Botany; 70(16):4197-4210.

Date published: August 19, 2019
Featured in this article: David Mendoza-Cózatl.

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A seed germination transcriptomic study contrasting two soybean genotypes that differ in terms of their tolerance to the deleterious impacts of elevated temperatures during seed fill. Gillman JD, Biever JJ, Ye S, Spollen WG, Givan SA, Lyu Z, Joshi T, Smith JR, Fritschi FB. BMC Research Notes; 12(1):522.

Date published: August 19, 2019
Featured in this article: Bill Spollen, Scott Givan, Zhen Lyu, Trupti Joshi.

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Muscle fiber-type selective propensity to pathology in the nmd mouse model of SMARD1. Villalón E, Lee NN, Marquez J, Lorson CL. Biochemical and Biophysical Research Communications; 516(1):313-319.

Date published: August 13, 2019
Featured in this article: Christian Lorson.

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Affordable remote monitoring of plant growth in facilities using Raspberry Pi computers. Grindstaff B, Mabry ME, Blischak PD, Quinn M, Chris Pires J. Applications in Plant Sciences; 7(8):e11280.

Date published: August 12, 2019
Featured in this article: J. Chris Pires.

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Biotechnological potential of LSD1, EDS1, and PAD4 in the improvement of crops and industrial plants. Bernacki MJ, Czarnocka W, Szechyńska-Hebda M, Mittler R, Karpiński S. Plants; 8(8):290.

Date published: August 1, 2019
Featured in this article: Ron Mittler.

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Silencing AXL by covalent siRNA-gelatin-antibody nanoconjugate inactivates mTOR/EMT pathway and stimulates p53 for TKI sensitization in NSCLC. Suresh D, Zambre A, Mukherjee S, Ghoshdastidar S, Jiang Y, Joshi T, Upendran A, Kannan R. Nanomedicine: Nanotechnology, Biology, and Medicine; 20:102007.

Date published: August 1, 2019
Featured in this article: Yuexu Jiang, Trupti Joshi.

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Early genistein exposure of California mice and effects on the gut microbiota-brain axis. Marshall BL, Liu Y, Farrington MJ, Mao J, Helferich WG, Schenk AK, Bivens NJ, Sarma SJ, Lei Z, Sumner LW, Joshi T, Rosenfeld CS. Journal of Endocrinology; 242(2):139-157.

Date published: August 1, 2019
Featured in this article: Jiude Mao, Nathan Bivens, Saurav Sarma, Zhentian Lei, Lloyd Sumner, Trupti Joshi.

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Virion-associated, host-derived DHX9/RNA helicase A enhances the processivity of HIV-1 reverse transcriptase on genomic RNA. Brady S, Singh G, Bolinger C, Song Z, Boeras I, Weng K, Trent B, Brown WC, Singh K, Boris-Lawrie K, Heng X. Journal of Biological Chemistry; 294(30):11473-11485.

Date published: July 26, 2019
Featured in this article: Kamlendra Singh.

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Increasing protected data accessibility for age-related cataract research using a semi-automated honest broker. Valluripally S, Raju M, Calyam P, Lemus M, Purohit S, Mosa A, Joshi T. Modeling and Artificial Intelligence in Ophthalmology; 2(3):115-132.

Date published: July 25, 2019
Featured in this article: Murugesan Raju, Trupti Joshi.

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Demonstration of highly efficient dual gRNA CRISPR/Cas9 editing of the homeologous GmFAD2-1A and GmFAD2-1B genes to yield a high oleic, low linoleic and α-linolenic acid phenotype in soybean. Do PT, Nguyen CX, Bui HT, Tran LTN, Stacey G, Gillman JD, Zhang ZJ, Stacey MG. BMC Plant Biology; 19(1):311.

Date published: July 15, 2019
Featured in this article: Gary Stacey, Minviluz (Bing) Stacey.

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Aspirin Triggered Resolvin D1 reduces inflammation and restores saliva secretion in a Sjögren’s syndrome mouse model. Dean S, Wang C-S, Nam K, Maruyama CL, Trump BG, Baker OJ. Rheumatology (United Kingdom); 58(7):1285-1292.

Date published: July 1, 2019
Featured in this article: Kihoon Nam, Olga Baker.

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Effects of moloney leukemia virus 10 protein on hepatitis B virus infection and viral replication. Puray-Chavez MN, Farghali MH, Yapo V, Huber AD, Liu D, Ndongwe TP, Casey MC, Laughlin T, Hannink M, Tedbury PR, Sarafianos SG. Viruses; 11(7):651.

Date published: July 1, 2019
Featured in this article: Mark Hannink.

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Exploring the molecular genetic foundations of cancer biology and how biomedical advances are made in an advanced undergraduate course. Alexander S, Hannink M. Biochemistry and Molecular Biology Education; 47(4):408-416.

Date published: July 1, 2019
Featured in this article: Mark Hannink.

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GS-CA compounds: First-in-class HIV-1 capsid inhibitors covering multiple grounds. Singh K, Gallazzi F, Hill KJ, Burke DH, Lange MJ, Quinn TP, Neogi U, Sönnerborg A. Frontiers in Microbiology; 10(JUN):1227.

Date published: June 20, 2019
Featured in this article: Kamlendra Singh, Fabio Gallazzi, Donald Burke-Agüero, Margaret Lange, Thomas Quinn.

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Synergistic effects of laminin-1 peptides, VEGF and FGF9 on salivary gland regeneration. Nam K, Dean SM, Brown CT, Smith RJ Jr, Lei P, Andreadis ST, Baker OJ. Acta Biomaterialia; 91:186-194.

Date published: June 1, 2019
Featured in this article: Kihoon Nam, Olga Baker.

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Long-acting Anti-HIV drugs targeting HIV-1 reverse transcriptase and integrase. Singh K, Sarafianos SG, Sönnerborg A. Pharmaceuticals; 12(2):62.

Date published: June 1, 2019
Featured in this article: Kamlendra Singh.

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Integrated metabolomics identifies CYP72A67 and CYP72A68 oxidases in the biosynthesis of Medicago truncatula oleanate sapogenins. Tzin V, Snyder JH, Yang DS, Huhman DV, Watson BS, Allen SN, Tang Y, Miettinen K, Arendt P, Pollier J, Goossens A, Sumner LW. Metabolomics; 15(6):85.

Date published: June 1, 2019
Featured in this article: Lloyd Sumner.

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Large-scale profiling of saponins in different ecotypes of Medicago truncatula. Lei Z, Watson BS, Huhman D, Yang DS, Sumner LW. Frontiers in Plant Science; 10:850.

Date published: May 31, 2019
Featured in this article: Zhentian Lei, Lloyd Sumner.

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HDAC5 catalytic activity suppresses cardiomyocyte oxidative stress and NRF2 target gene expression. Hu T, Schreiter FC, Bagchi RA, Tatman PD, Hannink M, McKinsey TA. Journal of Biological Chemistry; 294(21):8640-8652.

Date published: May 24, 2019
Featured in this article: Mark Hannink.

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Sequence determinants in gammaretroviral Env cytoplasmic tails dictate virus-specific pseudotyping compatibility. Song YE, Olinger GY, Janaka SK, Johnson MC. Journal of Virology; 93(11):e0217218.

Date published: May 15, 2019
Featured in this article: Marc Johnson.

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Novel Hepatitis B Virus Capsid-Targeting Antiviral That Aggregates Core Particles and Inhibits Nuclear Entry of Viral Cores. Huber AD, Pineda DL, Liu D, Boschert KN, Gres AT, Wolf JJ, Coonrod MN, Tang J, Laughlin TG, Yang Q, Puray-Chavez MN, Ji J, Singh K, Kirby KA, Wang Z, Sarafianos SG. ACS Infectious Diseases; 5(5):750-758.

Date published: May 10, 2019
Featured in this article: Kamlendra Singh.

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A method for investigating the pseudomonas syringae-arabidopsis thaliana pathosystem under various light environments. Leuchtman DL, Shumate AD, Gassmann W, Liscum E. Methods in Molecular Biology; 1991:107-113.

Date published: May 1, 2019
Featured in this article: Walter Gassmann.

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Generating transgenic arabidopsis plants for functional analysis of pathogen effectors and corresponding R proteins. Pike S, Gassmann W, Su J. Methods in Molecular Biology; 1991:199-206.

Date published: May 1, 2019
Featured in this article: Sharon Pike, Walter Gassmann, Jianbin Su.

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Preface. Gassmann W. Methods in Molecular Biology; 1991:v-vi.

Date published: May 1, 2019
Featured in this article: Walter Gassmann.

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Direct regulation of the EFR-dependent immune response by arabidopsis TCP transcription factors. Spears BJ, Howton TC, Gao F, Garner CM, Shahid Mukhtar M, Gassmann W. Molecular Plant-Microbe Interactions; 32(5):540-549.

Date published: May 1, 2019
Featured in this article: Walter Gassmann.

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Author Correction: A lipid-based partitioning mechanism for selective incorporation of proteins into membranes of HIV particles (Nature Cell Biology, (2019), 21, 4, (452-461), 10.1038/s41556-019-0300-Y). Sengupta P, Seo AY, Pasolli HA, Song YE, Johnson MC, Lippincott-Schwartz J. Nature Cell Biology; 21(5):662.

Date published: May 1, 2019
Featured in this article: Marc Johnson.

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HIV-1 subtype C with PYxE insertion has enhanced binding of Gag-p6 to host cell protein ALIX and increased replication fitness. van Domselaar R, Njenda DT, Rao R, Sönnerborg A, Singh K, Neogi U. Journal of Virology; 93(9):e00077-19.

Date published: May 1, 2019
Featured in this article: Kamlendra Singh.

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Ambient Metabolic Profiling and Imaging of Biological Samples with Ultrahigh Molecular Resolution Using Laser Ablation Electrospray Ionization 21 Tesla FTICR Mass Spectrometry. Stopka SA, Samarah LZ, Shaw JB, Liyu AV, Veličković D, Agtuca BJ, Kukolj C, Koppenaal DW, Stacey G, Paša-Tolić L, Anderton CR, Vertes A. Analytical Chemistry; 91(8):5028-5035.

Date published: April 16, 2019
Featured in this article: Gary Stacey.

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Characterization of the spatial and temporal expression of two soybean mirnas identifies SCL6 as a novel regulator of soybean nodulation. Hossain MS, Hoang NT, Yan Z, Tóth K, Meyers BC, Stacey G. Frontiers in Plant Science; 10:475.

Date published: April 16, 2019
Featured in this article: Gary Stacey.

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ATP7A delivers copper to the lysyl oxidase family of enzymes and promotes tumorigenesis and metastasis. Shanbhag V, Jasmer-McDonald K, Zhu S, Martin AL, Gudekar N, Khan A, Ladomersky E, Singh K, Weisman GA, Petris MJ. Proceedings of the National Academy of Sciences of the United States of America; 116(14):6836-6841.

Date published: April 2, 2019
Featured in this article: Vinit Shanbhag, Kimberly Jasmer, Nikita Gudekar, Aslam Khan, Kamlendra Singh, Gary Weisman, Michael Petris.

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A lipid-based partitioning mechanism for selective incorporation of proteins into membranes of HIV particles. Sengupta P, Seo AY, Pasolli HA, Song YE, Johnson MC, Lippincott-Schwartz J. Nature Cell Biology; 21(4):452-461.

Date published: April 1, 2019
Featured in this article: Marc Johnson.

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Identification and characterization of a core set of ROS wave-associated transcripts involved in the systemic acquired acclimation response of Arabidopsis to excess light. Zandalinas SI, Sengupta S, Burks D, Azad RK, Mittler R. Plant Journal; 98(1):126-141.

Date published: April 1, 2019
Featured in this article: Ron Mittler.

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Directions for research and training in plant omics: Big Questions and Big Data. Argueso CT, Assmann SM, Birnbaum KD, Chen S, Dinneny JR, Doherty CJ, Eveland AL, Friesner J, Greenlee VR, Law JA, Marshall-Colón A, Mason GA, O'Lexy R, Peck SC, Schmitz RJ, Song L, Stern D, Varagona MJ, Walley JW, Williams CM. Plant Direct; 3(4):e00133.

Date published: April 1, 2019
Featured in this article: Scott Peck.

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CMCDG, a novel nucleoside analog with favorable safety features, exerts potent activity against wild-type and entecavir-resistant hepatitis B virus. Higashi-Kuwata N, Hayashi S, Das D, Kohgo S, Murakami S, Hattori S-I, Imoto S, Venzon DJ, Singh K, Sarafianos SG, Tanaka Y, Mitsuya H. Antimicrobial Agents and Chemotherapy; 63(4):e02143-18.

Date published: April 1, 2019
Featured in this article: Kamlendra Singh.

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The lipid biochemistry of eukaryotic algae. Li-Beisson Y, Thelen JJ, Fedosejevs E, Harwood JL. Progress in Lipid Research; 74:31-68.

Date published: April 1, 2019
Featured in this article: Jay Thelen.

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Science at Sundance. Krauss RS, Shapiro MD, Koch PL, Kardon G, Cornelison DDW. Science; 363(6433):1270.

Date published: March 22, 2019
Featured in this article: D Cornelison.

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Relationship Between Carbon Mobilization and Root Growth Measured by Carbon-11 Tracer in Arabidopsis Starch Mutants. Song L, Agtuca B, Schueller MJ, Jurisson SS, Stacey G, Ferrieri RA. Journal of Plant Growth Regulation; 38(1):164-179.

Date published: March 15, 2019
Featured in this article: Gary Stacey.

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Terpenoid esters are the major constituents from leaf lipid droplets of Camellia sinensis. Zhou X, Chen X, Du Z, Zhang Y, Zhang W, Kong X, Thelen JJ, Chen C, Chen M. Frontiers in Plant Science; 10:179.

Date published: March 7, 2019
Featured in this article: Jay Thelen.

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The barren stalk2 Gene Is Required for Axillary Meristem Development in Maize. Yao H, Skirpan A, Wardell B, Matthes MS, Best NB, McCubbin T, Durbak A, Smith T, Malcomber S, McSteen P. Molecular Plant; 12(3):374-389.

Date published: March 4, 2019
Featured in this article: Paula McSteen.

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Auxin EvoDevo: Conservation and Diversification of Genes Regulating Auxin Biosynthesis, Transport, and Signaling. Matthes MS, Best NB, Robil JM, Malcomber S, Gallavotti A, McSteen P. Molecular Plant; 12(3):298-320.

Date published: March 4, 2019
Featured in this article: Jan Lorie Robil, Paula McSteen.

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Comparing human and mouse salivary glands: A practice guide for salivary researchers. Maruyama CL, Monroe MM, Hunt JP, Buchmann L, Baker OJ. Oral Diseases; 25(2):403-415.

Date published: March 1, 2019
Featured in this article: Olga Baker.

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Strain-specific effect on biphasic DNA binding by HIV-1 integrase. Hill KJ, Rogers LC, Njenda DT, Burke DH, Sarafianos SG, Sonnerborg A, Neogi U, Singh K. AIDS; 33(3):588-592.

Date published: March 1, 2019
Featured in this article: Donald Burke-Agüero, Kamlendra Singh.

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Recovery of blood flow regulation in microvascular resistance networks during regeneration of mouse gluteus maximus muscle. Fernando CA, Pangan AM, Cornelison DDW, Segal SS. Journal of Physiology; 597(5):1401-1417.

Date published: March 1, 2019
Featured in this article: D Cornelison.

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Using Xenopus laevis Oocytes to Functionally Characterize Plant Transporters. Pike S, Matthes MS, McSteen P, Gassmann W. Current protocols in plant biology; 4(1):e20087.

Date published: March 1, 2019
Featured in this article: Sharon Pike, Paula McSteen, Walter Gassmann.

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Plant-derived phosphocholine facilitates cellular uptake of anti-pulmonary fibrotic HJT-sRNA-m7. Du J, Liang Z, Xu J, Zhao Y, Li X, Zhang Y, Zhao D, Chen R, Liu Y, Joshi T, Chang J, Wang Z, Zhang Y, Zhu J, Liu Q, Xu D, Jiang C. Science China Life Sciences; 62(3):309-320.

Date published: March 1, 2019
Featured in this article: Trupti Joshi, Dong Xu.

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Importance of poly- 3-hydroxybutyrate metabolism to the ability of Herbaspirillum seropedicae to promote plant growth. Alves LPS, do Amaral FP, Kim D, Bom MT, Gavídia MP, Teixeira CS, Holthman F, Pedrosa FO, de Souza EM, Chubatsu LS, Müller-Santos M, Stacey G. Applied and Environmental Microbiology; 85(6):e02586-18.

Date published: March 1, 2019
Featured in this article: Gary Stacey.

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UHPLC-MS Analyses of Plant Flavonoids. Lei Z, Sumner BW, Bhatia A, Sarma SJ, Sumner LW. Current protocols in plant biology; 4(1):e20085.

Date published: March 1, 2019
Featured in this article: Zhentian Lei, Barbara Sumner, Saurav Sarma, Lloyd Sumner.

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An extracellular histidine-containing motif in the zinc transporter ZIP4 plays a role in zinc sensing and zinc-induced endocytosis in mammalian cells. Chun H, Korolnek T, Lee C-J, Coyne HJ III, Winge DR, Kim B-E, Petris MJ. Journal of Biological Chemistry; 294(8):2815-2826.

Date published: February 22, 2019
Featured in this article: Michael Petris.

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Activation of Innate Immune Responses by a CpG Oligonucleotide Sequence Composed Entirely of Threose Nucleic Acid. Lange MJ, Burke DH, Chaput JC. Nucleic Acid Therapeutics; 29(1):51-59.

Date published: February 1, 2019
Featured in this article: Margaret Lange, Donald Burke-Agüero.

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NEET Proteins: A new link between iron metabolism, reactive oxygen species, and cancer. Mittler R, Darash-Yahana M, Sohn YS, Bai F, Song L, Cabantchik IZ, Jennings PA, Onuchic JN, Nechushtai R. Antioxidants and Redox Signaling; 30(8):1083-1095.

Date published: February 1, 2019
Featured in this article: Ron Mittler.

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Editorial. Rivero RM, Oliver MJ, Mittler R. Physiologia Plantarum; 165(2):125-127.

Date published: February 1, 2019
Featured in this article: Ron Mittler.

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Molecular tools for detecting Pdh1 can improve soybean breeding efficiency by reducing yield losses due to pod shatter. Miranda C, Culp C, Škrabišová M, Joshi T, Belzile F, Grant DM, Bilyeu K. Molecular Breeding; 39(2):27.

Date published: February 1, 2019
Featured in this article: Trupti Joshi.

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Usability of reference-free transcriptome assemblies for detection of differential expression: A case study on Aethionema arabicum dimorphic seeds. Wilhelmsson PKI, Chandler JO, Fernandez-Pozo N, Graeber K, Ullrich KK, Arshad W, Khan S, Hofberger JA, Buchta K, Edger PP, Pires JC, Schranz ME, Leubner-Metzger G, Rensing SA. BMC Genomics; 20(1):95.

Date published: January 30, 2019
Featured in this article: J. Chris Pires.

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Domain-specific Topic Model for Knowledge Discovery through Conversational Agents in Data Intensive Scientific Communities. Zhang Y, Calyam P, Joshi T, Nair S, Xu D. Proceedings - 2018 IEEE International Conference on Big Data, Big Data 2018; 4886-4895.

Date published: January 22, 2019
Featured in this article: Trupti Joshi, Dong Xu.

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Knowledge Base Commons (KBCommons) v1.0: A multi OMICS’ web-based data integration framework for biological discoveries. Zeng S, Lyu Z, Narisetti SRK, Xu D, Joshi T. Proceedings - 2018 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018; 589-594.

Date published: January 21, 2019
Featured in this article: Shuai Zeng, Zhen Lyu, Dong Xu, Trupti Joshi.

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Integrating Gene Expression Data and Pathway Knowledge for in Silico Hypothesis Generation with IMPRes. Jiang Y, Wang D, Xu D, Joshi T. Proceedings - 2018 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018; 102-107.

Date published: January 21, 2019
Featured in this article: Yuexu Jiang, Duolin Wang, Dong Xu, Trupti Joshi.

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A Data Mining Approach for Biomarker Discovery Using Transcriptomics in Endometriosis. Akter S, Xu D, Nagel SC, Joshi T. Proceedings - 2018 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018; 969-972.

Date published: January 21, 2019
Featured in this article: Dong Xu, Trupti Joshi.

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Bi-Allelic mutations of LONP1 encoding the mitochondrial LonP1 protease cause pyruvate dehydrogenase deficiency and profound neurodegeneration with progressive cerebellar atrophy. Nimmo GAM, Venkatesh S, Pandey AK, Marshall CR, Hazrati L-N, Blaser S, Ahmed S, Cameron J, Singh K, Ray PN, Suzuki CK, Yoon G. Human Molecular Genetics; 28(2):290-306.

Date published: January 15, 2019
Featured in this article: Kamlendra Singh.

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Community cloud architecture to improve use accessibility with security compliance in health big data applications. Valluripally S, Raju M, Calyam P, Chrisholm M, Sivarathri SS, Mosa A, Joshi T. ACM International Conference Proceeding Series; 377-380.

Date published: January 4, 2019
Featured in this article: Murugesan Raju, Trupti Joshi.

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Copper uptake mechanism of Arabidopsis thaliana high-affinity COPT transporters. Sanz A, Pike S, Khan MA, Carrió-Seguí À, Mendoza-Cózatl DG, Peñarrubia L, Gassmann W. Protoplasma; 256(1):161-170.

Date published: January 3, 2019
Featured in this article: Sharon Pike, David Mendoza-Cózatl, Walter Gassmann.

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Comparative phosphoproteomic analysis of Barley Embryos with different dormancy during imbibition. Ishikawa S, Barrero J, Takahashi F, Peck S, Gubler F, Shinozaki K, Umezawa T. International Journal of Molecular Sciences; 20(2):451.

Date published: January 2, 2019
Featured in this article: Scott Peck.

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The renaissance of comparative biochemistry. Smith SD, Angelovici R, Heyduk K, Maeda HA, Moghe GD, Pires JC, Widhalm JR, Wisecaver JH. American Journal of Botany; 106(1):3-13.

Date published: January 1, 2019
Featured in this article: Ruthie Angelovici, J. Chris Pires.

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Zinc uptake in the Basidiomycota: Characterization of zinc transporters in Ustilago maydis. Martha-Paz AM, Eide D, Mendoza-Cózatl D, Castro-Guerrero NA, Aréchiga-Carvajal ET. Molecular Membrane Biology; 35(1):39-50.

Date published: January 1, 2019
Featured in this article: David Mendoza-Cózatl, Norma Castro-Guerrero.

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The cisd gene family regulates physiological germline apoptosis through ced-13 and the canonical cell death pathway in Caenorhabditis elegans. King SD, Gray CF, Song L, Nechushtai R, Gumienny TL, Mittler R, Padilla PA. Cell Death and Differentiation; 26(1):162-178.

Date published: January 1, 2019
Featured in this article: Ron Mittler.

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Rapid Responses to Abiotic Stress: Priming the Landscape for the Signal Transduction Network. Kollist H, Zandalinas SI, Sengupta S, Nuhkat M, Kangasjärvi J, Mittler R. Trends in Plant Science; 24(1):25-37.

Date published: January 1, 2019
Featured in this article: Ron Mittler.

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Understanding genetic control of root system architecture in soybean: Insights into the genetic basis of lateral root number. Prince SJ, Valliyodan B, Ye H, Yang M, Tai S, Hu W, Murphy M, Durnell LA, Song L, Joshi T, Liu Y, Van de Velde J, Vandepoele K, Grover Shannon J, Nguyen HT. Plant Cell and Environment; 42(1):212-229.

Date published: January 1, 2019
Featured in this article: Trupti Joshi.

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Identification and quantification of phytosterols in black walnut kernels. Vu DC, Lei Z, Sumner LW, Coggeshall MV, Lin C-H. Journal of Food Composition and Analysis; 75:61-69.

Date published: January 1, 2019
Featured in this article: Zhentian Lei, Lloyd Sumner.

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UHPLC-QTOF-MS/MS-SPE-NMR: A Solution to the Metabolomics Grand Challenge of Higher-Throughput, Confident Metabolite Identifications. Bhatia A, Sarma SJ, Lei Z, Sumner LW. Methods in Molecular Biology; 2037:113-133.

Date published: January 1, 2019
Featured in this article: Saurav Sarma, Zhentian Lei, Lloyd Sumner.

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Black Walnut (Juglans nigra) Extracts Inhibit Proinflammatory Cytokine Production from Lipopolysaccharide-Stimulated Human Promonocytic Cell Line U-937. Ho K-V, Schreiber KL, Vu DC, Rottinghaus SM, Jackson DE, Brown CR, Lei Z, Sumner LW, Coggeshall MV, Lin C-H. Frontiers in Pharmacology; 10(SEP):1059.

Date published: January 1, 2019
Featured in this article: Zhentian Lei, Lloyd Sumner.

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2018

MetExpert: An expert system to enhance gas chromatography‒mass spectrometry-based metabolite identifications. Qiu F, Lei Z, Sumner LW. Analytical Chimica Acta; 1037:316-326.

Date published: December 11, 2018
Featured in this article: Zhentian Lei, Lloyd Sumner.

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Poly-Target Selection Identifies Broad-Spectrum RNA Aptamers. Alam KK, Chang JL, Lange MJ, Nguyen PDM, Sawyer AW, Burke DH. Molecular Therapy - Nucleic Acids; 13:605-619.

Date published: December 7, 2018
Featured in this article: Margaret Lange, Donald Burke-Agüero.

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Generation and evaluation of modified opaque-2 popcorn suggests a route to quality protein popcorn. Ren Y, Yobi A, Marshall L, Angelovici R, Rodriguez O, Holding DR. Frontiers in Plant Science; 871:1803.

Date published: December 6, 2018
Featured in this article: Abou Yobi, Ruthie Angelovici.

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A High-Throughput Absolute-Level Quantification of Protein-Bound Amino Acids in Seeds. Yobi A, Angelovici R. Current protocols in plant biology; 3(4):e20084.

Date published: December 1, 2018
Featured in this article: Abou Yobi, Ruthie Angelovici.

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Erratum to: AT-RvD1 Promotes Resolution of Inflammation in NOD/ShiLtJ mice (Scientific Reports, (2017), 7, 1, (45525), 10.1038/srep45525). Wang C-S, Maruyama CL, Easley JT, Trump BG, Baker OJ. Scientific Reports; 8(1):15220.

Date published: December 1, 2018
Featured in this article: Olga Baker.

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Modular cell-internalizing aptamer nanostructure enables targeted delivery of large functional RNAs in cancer cell lines. Porciani D, Cardwell LN, Tawiah KD, Alam KK, Lange MJ, Daniels MA, Burke DH. Nature Communications; 9(1):2283.

Date published: December 1, 2018
Featured in this article: David Porciani, Margaret Lange, Donald Burke-Agüero.

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Phylogenetic analysis of the CDGSH iron-sulfur binding domain reveals its ancient origin. Sengupta S, Nechushtai R, Jennings PA, Onuchic JN, Padilla PA, Azad RK, Mittler R. Scientific Reports; 8(1):4840.

Date published: December 1, 2018
Featured in this article: Ron Mittler.

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Local and systemic metabolic responses during light-induced rapid systemic signaling. Choudhury FK, Devireddy AR, Azad RK, Shulaev V, Mittler R. Plant Physiology; 178(4):1461-1472.

Date published: December 1, 2018
Featured in this article: Ron Mittler.

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The DNA binding landscape of the maize AUXIN RESPONSE FACTOR family. Galli M, Khakhar A, Lu Z, Chen Z, Sen S, Joshi T, Nemhauser JL, Schmitz RJ, Gallavotti A. Nature Communications; 9(1):4526.

Date published: December 1, 2018
Featured in this article: Sidharth Sen, Trupti Joshi.

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Analyses of HIV-1 integrase sequences prior to South African national HIV-Treatment program and available of integrase inhibitors in Cape Town, South Africa. Brado D, Obasa AE, Ikomey GM, Cloete R, Singh K, Engelbrecht S, Neogi U, Jacobs GB. Scientific Reports; 8(1):4709.

Date published: December 1, 2018
Featured in this article: Kamlendra Singh.

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Metabolomics of two pecan varieties provides insights into scab resistance. Lei Z, Kranawetter C, Sumner BW, Huhman D, Wherritt DJ, Thomas AL, Rohla C, Sumner LW. Metabolites; 8(4):56.

Date published: December 1, 2018
Featured in this article: Zhentian Lei, Clayton Kranawetter, Barbara Sumner, Lloyd Sumner.

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Identifying antibacterial compounds in black walnuts (Juglans nigra) using a metabolomics approach. Ho K-V, Lei Z, Sumner LW, Coggeshall MV, Hsieh H-Y, Stewart GC, Lin C-H. Metabolites; 8(4):58.

Date published: December 1, 2018
Featured in this article: Zhentian Lei, Lloyd Sumner.

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Soy-Induced Fecal Metabolome Changes in Ovariectomized and Intact Female Rats: Relationship with Cardiometabolic Health. Veira-Potter VJ, Cross T-WL, Swanson KS, Sarma SJ, Lei Z, Sumner LW, Rosenfeld CS. Scientific Reports; 8(1):16896.

Date published: December 1, 2018
Featured in this article: Saurav Sarma, Zhentian Lei, Lloyd Sumner.

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Proteomic characterization of bradyrhizobium diazoefficiens bacteroids reveals a post-symbiotic, hemibiotrophic-like lifestyle of the bacteria within senescing soybean nodules. Strodtman KN, Frank S, Stevenson S, Thelen JJ, Emerich DW. International Journal of Molecular Sciences; 19(12):3947.

Date published: December 1, 2018
Featured in this article: Jay Thelen.

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The anti-apoptotic proteins NAF-1 and iASPP interact to drive apoptosis in cancer cells. Iosub-Amir A, Bai F, Sohn Y-S, Song L, Tamir S, Marjault H-B, Mayer G, Karmi O, Jennings PA, Mittler R, Onuchic JN, Friedler A, Nechushtai R. Chemical Science; 10(3):665-673.

Date published: November 20, 2018
Featured in this article: Ron Mittler.

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Central roles and regulatory mechanisms of dual-specificity MAPK phosphatases in developmental and stress signaling. Jiang L, Chen Y, Luo L, Peck SC. Frontiers in Plant Science; 871:1697.

Date published: November 20, 2018
Featured in this article: Scott Peck.

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Erratum to: Inositol phosphates are assembly co-factors for HIV-1 (Nature, (2018), 560, 7719, (509-512), 10.1038/s41586-018-0396-4). Dick RA, Zadrozny KK, Xu C, Schur FKM, Lyddon TD, Ricana CL, Wagner JM, Perilla JR, Ganser-Pornillos BK, Johnson MC, Pornillos O, Vogt VM. Nature; 563(7731):E22.

Date published: November 15, 2018
Featured in this article: Terri Lyddon, Marc Johnson.

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Integrating networks, Phylogenomics, and population genomics for the study of polyploidy. Blischak PD, Mabry ME, Conant GC, Pires JC. Annual Review of Ecology, Evolution, and Systematics; 49(2):253-278.

Date published: November 2, 2018
Featured in this article: J. Chris Pires.

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Monocot plastid phylogenomics, timeline, net rates of species diversification, the power of multi-gene analyses, and a functional model for the origin of monocots. Givnish TJ, Zuluaga A, Spalink D, Soto Gomez M, Lam VKY, Saarela JM, Sass C, Iles WJD, de Sousa DJL, Leebens-Mack J, Chris Pires J, Zomlefer WB, Gandolfo MA, Davis JI, Stevenson DW, dePamphilis C, Specht CD, Graham SW, Barrett CF, Ané C. American Journal of Botany; 105(11):1888-1910.

Date published: November 1, 2018
Featured in this article: J. Chris Pires.

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Abatement of 2,4-D by H₂O₂ solar photolysis and solar photo-Fenton-like process with minute Fe(III) concentrations. Serra-Clusellas A, De Angelis L, Lin C-H, Vo P, Bayati M, Sumner L, Lei Z, Amaral NB, Bertini LM, Mazza J, Pizzio LR, Stripeikis JD, Rengifo-Herrera JA, Fidalgo de Cortalezzi MM. Water Research; 144:572-580.

Date published: November 1, 2018
Featured in this article: Lloyd Sumner, Zhentian Lei.

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Aptamer-displaying peptide amphiphile micelles as a cell-targeted delivery vehicle of peptide cargoes. Smith JD, Cardwell LN, Porciani D, Nguyen JA, Zhang R, Gallazzi F, Tata RR, Burke DH, Daniels MA, Ulery BD. Physical Biology; 15(6):065006.

Date published: October 22, 2018
Featured in this article: David Porciani, Fabio Gallazzi, Donald Burke-Agüero.

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βTrCP is Required for HIV-1 Vpu Modulation of CD4, GaLV Env, and BST-2/Tetherin. Song YE, Cyburt D, Lucas TM, Gregory DA, Lyddon TD, Johnson MC. Viruses; 10(10):573.

Date published: October 19, 2018
Featured in this article: Terri Lyddon, Marc Johnson.

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Phosphate deficiency negatively affects early steps of the symbiosis between common bean and Rhizobia. Isidra-Arellano MC, Reyero-Saavedra MR, Sánchez-Correa MS, Pingault L, Sen S, Joshi T, Girard L, Castro-Guerrero NA, Mendoza-Cozatl DG, Libault M, Valdés-López O. Genes; 9(10):498.

Date published: October 15, 2018
Featured in this article: Sidharth Sen, Trupti Joshi, Norma Castro-Guerrero, David Mendoza-Cózatl.

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Changes in iron availability in Arabidopsis are rapidly sensed in the leaf vasculature and impaired sensing leads to opposite transcriptional programs in leaves and roots. Khan MA, Castro-Guerrero NA, McInturf SA, Nguyen NT, Dame AN, Wang J, Bindbeutel RK, Joshi T, Jurisson SS, Nusinow DA, Mendoza-Cozatl DG. Plant Cell and Enviroment; 41(10):2263-2276.

Date published: October 1, 2018
Featured in this article: Norma Castro-Guerrero, Trupti Joshi, David Mendoza-Cózatl.

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Contribution of a multifunctional polymerase region of footand-mouth disease virus to lethal mutagenesis. De La Higuera I, Ferrer-Octa C, Moreno E, De Ávila AI, Soria ME, Singh K, Caridi F, Sobrino F, Sarafianos SG, Perales C, Verdaguer N, Domingo E. Journal of Virology; 92(20):e01119.

Date published: October 1, 2018
Featured in this article: Kamlendra Singh.

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Antiretroviral potency of 4⁰-ethnyl-2⁰-fluoro-2⁰-deoxyadenosine, tenofovir alafenamide and second-generation NNRTIs across diverse HIV-1 subtypes. Njenda DT, Aralaguppe SG, Singh K, Rao R, Sönnerborg A, Sarafianos SG, Neogi U. Journal of Antimicrobial Chemotherapy; 73(10):2721-2728.

Date published: October 1, 2018
Featured in this article: Kamlendra Singh.

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A Direct Comparison of IV and ICV Delivery Methods for Gene Replacement Therapy in a Mouse Model of SMARD1. Shababi M, Villalón E, Kaifer KA, DeMarco V, Lorson CL. Molecular Therapy - Methods and Clinical Development; 10:348-360.

Date published: September 21, 2018
Featured in this article: Christian Lorson.

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Docosahexaenoic acid (DHA): An essential nutrient and a nutraceutical for brain health and diseases. Sun GY, Simonyi A, Fritsche KL, Chuang DY, Hannink M, Gu Z, Greenlief CM, Yao JK, Lee JC, Beversdorf DQ. Prostaglandins Leukotrienes and Essential Fatty Acids; 136:3-13.

Date published: September 1, 2018
Featured in this article: Mark Hannink, Michael Greenlief.

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Rapid Accumulation of Glutathione During Light Stress in Arabidopsis. Choudhury FK, Devireddy AR, Azad RK, Shulaev V, Mittler R. Plant and Cell Physiology; 59(9):1817-1826.

Date published: September 1, 2018
Featured in this article: Ron Mittler.

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Transcriptome-wide comparison of selenium hyperaccumulator and nonaccumulator Stanleya species provides new insight into key processes mediating the hyperaccumulation syndrome. Wang J, Cappa JJ, Harris JP, Edger PP, Zhou W, Pires JC, Adair M, Unruh SA, Simmons MP, Schiavon M, Pilon-Smits EAH. Plant Biotechnology Journal; 16(9):1582-1594.

Date published: September 1, 2018
Featured in this article: J. Chris Pires.

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Observed metabolic asymmetry within soybean root nodules reflects unexpected complexity in rhizobacteria-legume metabolite exchange. Veličković D, Agtuca BJ, Stopka SA, Vertes A, Koppenaal DW, Paša-Tolić L, Stacey G, Anderton CR. ISME Journal; 12(9):2335-2338.

Date published: September 1, 2018
Featured in this article: Gary Stacey.

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Inositol phosphates are assembly co-factors for HIV-1. Dick RA, Zadrozny KK, Xu C, Schur FKM, Lyddon TD, Ricana CL, Wagner JM, Perilla JR, Ganser-Pornillos BK, Johnson MC, Pornillos O, Vogt VM. Nature; 560(7719):509-512.

Date published: August 23, 2018
Featured in this article: Terri Lyddon, Marc Johnson.

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Tcp transcription factors interact with npr1 and contribute redundantly to systemic acquired resistance. Li M, Chen H, Chen J, Chang M, Palmer IA, Gassmann W, Liu F, Fu ZQ. Frontiers in Plant Science; 9:1153.

Date published: August 14, 2018
Featured in this article: Walter Gassmann.

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Embryogenic Competence Acquisition in Sugar Cane Callus Is Associated with Differential H ⁺ -Pump Abundance and Activity. Passamani LZ, Bertolazi AA, Ramos AC, Santa-Catarina C, Thelen JJ, Silveira V. Journal of Proteome Research; 17(8):2767-2779.

Date published: August 3, 2018
Featured in this article: Jay Thelen.

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Structural implications of genotypic variations in HIV-1 integrase from diverse subtypes. Rogers L, Obasa AE, Jacobs GB, Sarafianos SG, Sönnerborg A, Neogi U, Singh K. Frontiers in Microbiology; 9(AUG):1754.

Date published: August 2, 2018
Featured in this article: Kamlendra Singh.

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Editing of an alpha-kafirin gene family increases digestibility and protein quality in sorghum. Li A, Jia S, Yobi A, Ge Z, Sato SJ, Zhang C, Angelovici R, Clemente TE, Holding DR. Plant Physiology; 177(4):1425-1438.

Date published: August 1, 2018
Featured in this article: Abou Yobi, Ruthie Angelovici.

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Variation in seed allergen content from three varieties of soybean cultivated in nine different locations in Iowa, Illinois, and Indiana. McClain S, Stevenson SE, Brownie C, Herouet-Guicheney C, Herman RA, Ladics GS, Privalle L, Ward JM, Doerrer N, Thelen JJ. Frontiers in Plant Science; 9:1025.

Date published: July 23, 2018
Featured in this article: Jay Thelen.

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Parvovirus minute virus of mice interacts with sites of cellular DNA damage to establish and amplify its lytic infection. Majumder K, Wang J, Boftsi M, Fuller MS, Rede JE, Joshi T, Pintel DJ. eLife; 7:e37750.

Date published: July 20, 2018
Featured in this article: Juexin Wang, Maria Boftsi, Trupti Joshi.

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The G-Protein–Coupled Receptor ALX/Fpr2 Regulates Adaptive Immune Responses in Mouse Submandibular Glands. Wang C-S, Baker OJ. American Journal of Pathology; 188(7):1555-1562.

Date published: July 1, 2018
Featured in this article: Olga Baker.

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Pathogen-induced AdDjSKI of the wild peanut, Arachis diogoi, potentiates tolerance of multiple stresses in E. coli and tobacco. Rampuria S, Bag P, Rogan CJ, Sharma A, Gassmann W, Kirti PB. Plant Science; 272:62-74.

Date published: July 1, 2018
Featured in this article: Walter Gassmann.

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Increased transpiration is correlated with reduced boron deficiency symptoms in the maize tassel-less1 mutant. Matthes MS, Robil JM, Tran T, Kimble A, McSteen P. Physiologia Plantarum; 163(3):344-355.

Date published: July 1, 2018
Featured in this article: Jan Lorie Robil, Paula McSteen.

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ROS-induced ROS release in plant and animal cells. Zandalinas SI, Mittler R. Free Radical Biology and Medicine; 122:21-27.

Date published: July 1, 2018
Featured in this article: Ron Mittler.

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P2Y2R deletion ameliorates sialadenitis in IL-14α-transgenic mice. Woods LT, Camden JM, Khalafalla MG, Petris MJ, Erb L, Ambrus JL Jr, Weisman GA. Oral Diseases; 24(5):761-771.

Date published: July 1, 2018
Featured in this article: Lucas Woods, Jean Camden, Michael Petris, Gary Weisman.

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Homoeologous exchange is a major cause of gene presence/absence variation in the amphidiploid Brassica napus. Hurgobin B, Golicz AA, Bayer PE, Chan C-KK, Tirnaz S, Dolatabadian A, Schiessl SV, Samans B, Montenegro JD, Parkin IAP, Pires JC, Chalhoub B, King GJ, Snowdon R, Batley J, Edwards D. Plant Biotechnology Journal; 16(7):1265-1274.

Date published: July 1, 2018
Featured in this article: J. Chris Pires.

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The Physcomitrella patens gene atlas project: large-scale RNA-seq based expression data. Perroud P-F, Haas FB, Hiss M, Ullrich KK, Alboresi A, Amirebrahimi M, Barry K, Bassi R, Bonhomme S, Chen H, Coates JC, Fujita T, Guyon-Debast A, Lang D, Lin J, Lipzen A, Nogué F, Oliver MJ, Ponce de León I, Quatrano RS, Rameau C, Reiss B, Reski R, Ricca M, Saidi Y, Sun N, Szövényi P, Sreedasyam A, Grimwood J, Stacey G, Schmutz J, Rensing SA. Plant Journal; 95(1):168-182.

Date published: July 1, 2018
Featured in this article: Gary Stacey.

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AtOPT6 protein functions in long-distance transport of glutathione in arabidopsis thaliana. Wongkaew A, Asayama K, Kitaiwa T, Nakamura S-I, Kojima K, Stacey G, Sekimoto H, Yokoyama T, Ohkama-Ohtsu N. Plant and Cell Physiology; 59(7):1443-1451.

Date published: July 1, 2018
Featured in this article: Gary Stacey.

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Controlled chemical modification of biomolecules by femtosecond laser in polar liquids. Gruzdev V, Korkin D, Mooney BP, Havelund JF, Møller IM, Thelen JJ. Proceedings - International Conference Laser Optics 2018, ICLO 2018; 595.

Date published: June 4, 2018
Featured in this article: Brian Mooney, Jay Thelen.

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The unique fold and lability of the [2Fe-2S] clusters of NEET proteins mediate their key functions in health and disease. Karmi O, Marjault H-B, Pesce L, Carloni P, Onuchic JN, Jennings PA, Mittler R, Nechushtai R. Journal of Biological Inorganic Chemistry; 23(4):599-612.

Date published: June 1, 2018
Featured in this article: Ron Mittler.

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Evidence for plant-derived xenomiRs based on a large-scale analysis of public small RNA sequencing data from human samples. Zhao Q, Liu Y, Zhang N, Hu M, Zhang H, Joshi T, Xu D. PLoS ONE; 13(6):e0187519.

Date published: June 1, 2018
Featured in this article: Trupti Joshi, Dong Xu.

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MU-LOC: A machine-learning method for predicting mitochondrially localized proteins in plants. Zhang N, Rao RSP, Salvato F, Havelund JF, Møller IM, Thelen JJ, Xu D. Frontiers in Plant Science; 9:634.

Date published: May 23, 2018
Featured in this article: Jay Thelen, Dong Xu.

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Controlled laser biochemistry in room-temperature polar liquids by ultrashort laser pulses. Gruzdev V, Korkin D, Mooney BP, Havelund JF, Møller IM, Thelen JJ. Optics InfoBase Conference Papers; Part F92-CLEO_AT 2018:Code 139958.

Date published: May 13, 2018
Featured in this article: Brian Mooney, Jay Thelen.

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Controlled laser biochemistry in room-temperature polar liquids by ultrashort laser pulses. Gruzdev V, Korkin D, Mooney BP, Havelund JF, Møller IM, Thelen JJ. 2018 Conference on Lasers and Electro-Optics, CLEO 2018 - Proceedings; 8426282.

Date published: May 13, 2018
Featured in this article: Brian Mooney, Jay Thelen.

In Vivo Quantitative Monitoring of Subunit Stoichiometry for Metabolic Complexes. Wilson RS, Thelen JJ. Journal of Proteome Research; 17(5):1773-1783.

Date published: May 4, 2018
Featured in this article: Jay Thelen.

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Erratum: Author Correction: Genome-Guided Phylo-Transcriptomic Methods and the Nuclear Phylogenetic Tree of the Paniceae Grasses (Scientific reports (2017) 7 1 (13528)). Washburn JD, Schnable JC, Conant GC, Brutnell TP, Shao Y, Zhang Y, Ludwig M, Davidse G, Pires JC. Scientific Reports; 8(1):7120.

Date published: May 2, 2018
Featured in this article: J. Chris Pires.

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Genome-wide nucleotide diversity and associations with geography, ploidy level and glucosinolate profiles in Aethionema arabicum (Brassicaceae). Mohammadin S, Wang W, Liu T, Moazzeni H, Ertugrul K, Uysal T, Christodoulou CS, Edger PP, Pires JC, Wright SI, Schranz ME. Plant Systematics and Evolution; 304(5):619-630.

Date published: May 1, 2018
Featured in this article: J. Chris Pires.

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Gene expression profiles of ion channels and receptors in mouse resistance arteries: Effects of cell type, vascular bed, and age. Boerman EM, Sen S, Shaw RL, Joshi T, Segal SS. Microcirculation; 25(4):e12452.

Date published: May 1, 2018
Featured in this article: Sidharth Sen, Trupti Joshi.

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Pathway-specific metabolome analysis with ¹⁸ O ₂ -labeled Medicago truncatula via a mass spectrometry-based approach. Kera K, Find DD, Wherritt DJ, Nagashima Y, Shimada N, Ara T, Ogata Y, Sumner LW, Suzuki H. Metabolomics; 14(5):71.

Date published: May 1, 2018
Featured in this article: Lloyd Sumner.

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Topological data analysis as a morphometric method: Using persistent homology to demarcate a leaf morphospace. Li M, An H, Angelovici R, Bagaza C, Batushansky A, Clark L, Coneva V, Donoghue MJ, Edwards E, Fajardo D, Fang H, Frank MH, Gallaher T, Gebken S, Hill T, Jansky S, Kaur B, Klahs PC, Klein LL, Kuraparthy V, Londo J, Migicovsky Z, Miller A, Mohn R, Myles S, Otoni WC, Pires JC, Rieffer E, Schmerler S, Spriggs E, Topp CN, Van Deynze A, Zhang K, Zhu L, Zink BM, Chitwood DH. Frontiers in Plant Science; 9:553.

Date published: April 25, 2018
Featured in this article: Hong An, Ruthie Angelovici, Clement Bagaza, J. Chris Pires.

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Acetylation and phosphorylation of human TFAM regulate TFAM-DNA interactions via contrasting mechanisms. King GA, Hashemi Shabestari M, Taris KK-H, Pandey AK, Venkatesh S, Thilagavathi J, Singh K, Krishna Koppisetti R, Temiakov D, Roos WH, Suzuki CK, Wuite GJL. Nucleic Acids Research; 46(7):3633-3642.

Date published: April 20, 2018
Featured in this article: Kamlendra Singh.

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Erratum: Author Correction: Analyses of HIV-1 integrase sequences prior to South African national HIV-treatment program and availability of integrase inhibitors in Cape Town, South Africa (Scientific reports (2018) 8 1 (4709)). Brado D, Obasa AE, Ikomey GM, Cloete R, Singh K, Engelbrecht S, Neogi U, Jacobs GB. Scientific Reports; 8(1):6262.

Date published: April 16, 2018
Featured in this article: Kamlendra Singh.

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The pioneer bridge: A long-term, non-invasive, esthetic composite bonded bridge for the replacement of anterior teeth. Wang FS, Cera CV, Baker OJ, Janis JN. International Journal of Dentistry and Oral Science; 5(4):630-634.

Date published: April 1, 2018
Featured in this article: Olga Baker.

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Phylotranscriptomic analysis and genome evolution of the Cypripedioideae (Orchidaceae). Unruh SA, McKain MR, Lee Y-I, Yukawa T, McCormick MK, Shefferson RP, Smithson A, Leebens-Mack JH, Pires JC. American Journal of Botany; 105(4):631-640.

Date published: April 1, 2018
Featured in this article: J. Chris Pires.

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Editorial overview: Genome studies and molecular genetics: Treasure troves of evolution. Van de Peer Y, Pires JC. Current Opinion in Plant Biology; 42:iii-v.

Date published: April 1, 2018
Featured in this article: J. Chris Pires.

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Rare Disease Mechanisms Identified by Genealogical Proteomics of Copper Homeostasis Mutant Pedigrees. Zlatic SA, Vrailas-Mortimer A, Gokhale A, Carey LJ, Scott E, Burch R, McCall MM, Rudin-Rush S, Davis JB, Hartwig C, Werner E, Li L, Petris M, Faundez V. Cell Systems; 6(3):368-380.e6.

Date published: March 28, 2018
Featured in this article: Michael Petris.

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The bacterial type III-secreted protein AvrRps4 is a bipartite effector. Halane MK, Kim SH, Spears BJ, Garner CM, Rogan CJ, Okafor EC, Su J, Bhattacharjee S, Gassmann W. PLoS Pathogens; 14(3):e1006984.

Date published: March 1, 2018
Featured in this article: Jianbin Su, Walter Gassmann.

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Family A and B DNA polymerases in cancer: Opportunities for therapeutic interventions. Shanbhag V, Sachdev S, Flores JA, Modak MJ, Singh K. Biology; 7(1):5.

Date published: March 1, 2018
Featured in this article: Vinit Shanbhag, Shrikesh C. "Rick" Sachdev, Kamlendra Singh.

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Brassicales phylogeny inferred from 72 plastid genes: A reanalysis of the phylogenetic localization of two paleopolyploid events and origin of novel chemical defenses. Edger PP, Hall JC, Harkess A, Tang M, Coombs J, Mohammadin S, Schranz ME, Xiong Z, Leebens-Mack J, Meyers BC, Sytsma KJ, Koch MA, Al-Shehbaz IA, Pires JC. American Journal of Botany; 105(3):463-469.

Date published: March 1, 2018
Featured in this article: J. Chris Pires.

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Preferential retention of genes from one parental genome after polyploidy illustrates the nature and scope of the genomic conflicts induced by hybridization. Emery M, Willis MMS, Hao Y, Barry K, Oakgrove K, Peng Y, Schmutz J, Lyons E, Pires JC, Edger PP, Conant GC. PLoS Genetics; 14(3):e1007267.

Date published: March 1, 2018
Featured in this article: J. Chris Pires.

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Patterns of population variation in two paleopolyploid eudicot lineages suggest that dosage-based selection on homeologs is long-lived. Hao Y, Washburn JD, Rosenthal J, Nielsen B, Lyons E, Edger PP, Pires JC, Conant GC. Genome Biology and Evolution; 10(3):999-1011.

Date published: March 1, 2018
Featured in this article: J. Chris Pires.

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Lipopolysaccharides trigger two successive bursts of reactive oxygen species at distinct cellular locations. Shang-guan K, Wang M, Htwe NMPS, Li P, Li Y, Qi F, Zhang D, Cao M, Kim C, Weng H, Cen H, Black IM, Azadi P, Carlson RW, Stacey G, Liang Y. Plant Physiology; 176(3):2543-2556.

Date published: March 1, 2018
Featured in this article: Gary Stacey.

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Absolute Quantitation of Plant Proteins. Ahsan N, Wilson RS, Thelen JJ. Current protocols in plant biology; 3(1):1-13.

Date published: March 1, 2018
Featured in this article: Jay Thelen.

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Tolerance to stress combination in tomato plants: New insights in the protective role of melatonin. Martinez V, Nieves-Cordones M, Lopez-Delacalle M, Rodenas R, Mestre TC, Garcia-Sanchez F, Rubio F, Nortes PA, Mittler R, Rivero RM. Molecules; 23(3):535.

Date published: February 28, 2018
Featured in this article: Ron Mittler.

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Coordinating the overall stomatal response of plants: Rapid leaf-to-leaf communication during light stress. Devireddy AR, Zandalinas SI, Gómez-Cadenas A, Blumwald E, Mittler R. Science Signaling; 11(518):eaam9514.

Date published: February 20, 2018
Featured in this article: Ron Mittler.

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Ex-vivo antiretroviral potency of newer integrase strand transfer inhibitors cabotegravir and bictegravir in HIV type 1 non-B subtypes. Neogi U, Singh K, Aralaguppe SG, Rogers LC, Njenda DT, Sarafianos SG, Hejdeman B, Sönnerborg A. AIDS; 32(4):469-476.

Date published: February 20, 2018
Featured in this article: Kamlendra Singh.

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Selective vulnerability in neuronal populations in nmd/SMARD1 mice. Villalón E, Shababi M, Kline R, Lorson ZC, Florea KM, Lorson CL. Human Molecular Genetics; 27(4):679-690.

Date published: February 15, 2018
Featured in this article: Christian Lorson.

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Constant vigilance: plant functions guarded by resistance proteins. Su J, Spears BJ, Kim SH, Gassmann W. Plant Journal; 93(4):637-650.

Date published: February 1, 2018
Featured in this article: Jianbin Su, Walter Gassmann.

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Self-oligomerization regulates stability of survival motor neuron protein isoforms by sequestering an SCFSlmb degron. Gray KM, Kaifer KA, Baillat D, Wen Y, Bonacci TR, Ebert AD, Raimer AC, Spring AM, Have ST, Glascock JJ, Gupta K, Van Duyne GD, Emanuele MJ, Lamond AI, Wagner EJ, Lorson CL, Gregory Matera A. Molecular Biology of the Cell; 29(2):96-110.

Date published: January 15, 2018
Featured in this article: Christian Lorson.

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“Known Unknowns”: Current Questions in Muscle Satellite Cell Biology. Cornelison DDW. Current Topics in Developmental Biology; 126:205-233.

Date published: January 1, 2018
Featured in this article: D Cornelison.

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Assembly of PGAM5 into Multimeric Complexes Provides a Mechanism for Allosteric Regulation of Phosphatase Activity. Tipton P, Su T, Hannink M. Methods in Enzymology; 607:353-372.

Date published: January 1, 2018
Featured in this article: Mark Hannink.

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Cancer as a mutation-driven evolutionary process. Hannink M, Temin HM. Growth Regulation and Carcinogenesis: Volume I; 95-97.

Date published: January 1, 2018
Featured in this article: Mark Hannink.

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Mutation-driven evolution of rev-T. Hannink M, Temin HM. Growth Regulation and Carcinogenesis: Volume I; 99-109.

Date published: January 1, 2018
Featured in this article: Mark Hannink.

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Plant adaptations to the combination of drought and high temperatures. Zandalinas SI, Mittler R, Balfagón D, Arbona V, Gómez-Cadenas A. Physiologia Plantarum; 162(1):2-12.

Date published: January 1, 2018
Featured in this article: Ron Mittler.

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Extracellular ATP acts on jasmonate signaling to reinforce plant defense. Tripathi D, Zhang T, Koo AJ, Stacey G, Tanaka K. Plant Physiology; 176(1):511-523.

Date published: January 1, 2018
Featured in this article: Gary Stacey.

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Metabolic noise and distinct subpopulations observed by single cell LAESI mass spectrometry of plant cells in situ. Stopka SA, Khattar R, Agtuca BJ, Anderton CR, Paša-Tolić L, Stacey G, Vertes A. Frontiers in Plant Science; 871:1646.

Date published: January 1, 2018
Featured in this article: Gary Stacey.

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Seminal fluid metabolome and epididymal changes after antibiotic treatment in mice. Rosenfeld CS, Javurek AB, Johnson SA, Lei Z, Sumner LW, Hess RA. Reproduction; 156(1):1-10.

Date published: January 1, 2018
Featured in this article: Zhentian Lei, Lloyd Sumner.

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2017

MusiteDeep: A deep-learning framework for general and kinase-specific phosphorylation site prediction. Wang D, Zeng S, Xu C, Qiu W, Liang Y, Joshi T, Xu D. Bioinformatics; 33(24):3909-3916.

Date published: December 15, 2017
Featured in this article: Duolin Wang, Shuai Zeng, Chunhui Xu, Trupti Joshi, Dong Xu.

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Development of ‘KBCommons’ – Universal informatics framework for multi-omics translational research. Narisetti SRK, Zeng S, Lyu Z, Joshi T. Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017; 2017-January:2285-2286.

Date published: December 15, 2017
Featured in this article: Shuai Zeng, Zhen Lyu, Trupti Joshi.

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A multi-omics informatics approach for identifying molecular mechanisms and biomarkers in clinical patients with endometriosis. Akter S, Wilshire G, Davis JW, Bromfield J, Crowder S, Joshi T, Pelch K, Schust DJ, Meng A, Barrier B, Nagel SC. Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017; 2017-January:2221-2223.

Date published: December 15, 2017
Featured in this article: Trupti Joshi.

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Development of an informatics analytics workflow for DAP-seq data exploration and validation for auxin response factors in maize. Sen, S, Galli M, Gallavotti A, Joshi T. Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017; 2017-January:2300-2301.

Date published: December 15, 2017
Featured in this article: Sidharth Sen, Trupti Joshi.

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Leaf shedding as an anti-bacterial defense in Arabidopsis cauline leaves. Patharkar OR, Gassmann W, Walker JC. PLoS Genetics; 13(12):e1007132.

Date published: December 1, 2017
Featured in this article: Walter Gassmann.

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Optimization of a series of heterocycles as survival motor neuron gene transcription enhancers. Choi S, Calder AN, Miller EH, Anderson KP, Fiejtek DK, Rietz A, Li H, Cherry JJ, Quist KM, Xing X, Glicksman MA, Cuny GD, Lorson CL, Androphy EA, Hodgetts KJ. Bioorganic and Medicinal Chemistry Letters; 27(23):5144-5148.

Date published: December 1, 2017
Featured in this article: Christian Lorson.

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Phosphorylation of arabidopsis MAP kinase phosphatase 1 (MKP1) is required for PAMP responses and resistance against bacteria. Jiang L, Anderson JC, González Besteiro MA, Peck SC. Plant Physiology; 175(4):1839-1852.

Date published: December 1, 2017
Featured in this article: Scott Peck.

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The mitochondrial metallochaperone SCO1 maintains CTR1 at the plasma membrane to preserve copper homeostasis in the murine heart. Baker ZN, Jett K, Boulet A, Hossain A, Cobine PA, Kim B-E, El Zawily AM, Lee L, Tibbits GF, Petris MJ, Leary SC. Human Molecular Genetics; 26(23):4617-4628.

Date published: December 1, 2017
Featured in this article: Michael Petris.

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The asparagus genome sheds light on the origin and evolution of a young y chromosome. Harkess A, Zhou J, Xu C, Bowers JE, Van Der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y, Luo S, Chen H, Gao J, Mao Z, Pires JC, Luo M, Kudrna D, Wing RA, Meyers BC, Yi K, Kong H, Lavrijsen P, Sunseri F, Falavigna A, Ye Y, Leebens-Mack JH, Chen G. Nature Communications; 8(1):1279.

Date published: December 1, 2017
Featured in this article: J. Chris Pires.

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Genome-Guided Phylo-Transcriptomic Methods and the Nuclear Phylogentic Tree of the Paniceae Grasses. Washburn JD, Schnable JC, Conant GC, Brutnell TP, Shao Y, Zhang Y, Ludwig M, Davidse G, Pires JC. Scientific Reports; 7(1):13528.

Date published: December 1, 2017
Featured in this article: J. Chris Pires.

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Extracellular ATP elicits DORN1-mediated RBOHD phosphorylation to regulate stomatal aperture. Chen D, Cao Y, Li H, Kim D, Ahsan N, Thelen J, Stacey G. Nature Communications; 8(1):2265.

Date published: December 1, 2017
Featured in this article: Jay Thelen, Gary Stacey.

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Controlled modification of biomolecules by ultrashort laser pulses in polar liquids. Gruzdev V, Korkin D, Mooney BP, Havelund JF, Møller IM, Thelen JJ. Scientific Reports; 7(1):5550.

Date published: December 1, 2017
Featured in this article: Brian Mooney, Jay Thelen.

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The bacteroid periplasm in soybean nodules is an interkingdom symbiotic space. Strodtman KN, Stevenson SE, Waters JK, Mawhinney TP, Thelen JJ, Polacco JC, Emerich DW. Molecular Plant-Microbe Interactions; 30(12):997-1008.

Date published: December 1, 2017
Featured in this article: Jay Thelen.

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Arabidopsis TCP transcription factors interact with the SUMO conjugating machinery in nuclear foci. Mazur MJ, Spears BJ, Djajasaputra A, Van Der Gragt M, Vlachakis G, Beerens B, Gassmann W, Van Den Burg HA. Frontiers in Plant Science; 8:2043.

Date published: November 30, 2017
Featured in this article: Walter Gassmann.

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Molecular Dynamics Simulations of the [2Fe-2S] Cluster-Binding Domain of NEET Proteins Reveal Key Molecular Determinants That Induce Their Cluster Transfer/Release. Pesce L, Calandrini V, Marjault H-B, Lipper CH, Rossetti G, Mittler R, Jennings PA, Bauer A, Nechushtai R, Carloni P. Journal of Physical Chemistry B; 121(47):10648-10656.

Date published: November 30, 2017
Featured in this article: Ron Mittler.

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Activation of the lrr receptor-like kinase psy1r requires transphosphorylation of residues in the activation loop. Oehlenschlæger CB, Gersby LBA, Ahsan N, Pedersen JT, Kristensen A, Solakova TV, Thelen JJ, Fuglsang AT. Frontiers in Plant Science; 8:2005.

Date published: November 27, 2017
Featured in this article: Jay Thelen.

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Laminin-111-derived peptide conjugated fibrin hydrogel restores salivary gland function. Nam K, Maruyama CL, Wang C-S, Trump BG, Lei P, Andreadis ST, Baker OJ. PLoS ONE; 12(11):e0187069.

Date published: November 1, 2017
Featured in this article: Kihoon Nam, Olga Baker.

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A 37-year-old Menkes disease patient—Residual ATP7A activity and early copper administration as key factors in beneficial treatment. Tümer Z, Petris M, Zhu S, Mercer J, Bukrinski J, Bilz S, Baerlocher K, Horn N, Møller LB. Clinical Genetics; 92(5):548-553.

Date published: November 1, 2017
Featured in this article: Michael Petris.

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Optimization of trans-splicing for Huntington’s disease RNA therapy. Rindt H, Tom CM, Lorson CL, Mattis VB. Frontiers in Neuroscience; 11(OCT):544.

Date published: October 10, 2017
Featured in this article: Christian Lorson.

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P2X7 receptor antagonism prevents IL-1 release from salivary epithelial cells and reduces inflammation in a mouse model of autoimmune exocrinopathy. Khalafalla MG, Woods LT, Camden JM, Khan AA, Limesand KH, Petris MJ, Erb L, Weisman GA. Journal of Biological Chemistry; 292(40):16626-16637.

Date published: October 6, 2017
Featured in this article: Lucas Woods, Jean Camden, Aslam Khan, Michael Petris, Gary Weisman.

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Luxurious nitrogen fertilization of two sugar cane genotypes contrasting for lignin composition causes changes in the stem proteome related to carbon, nitrogen, and oxidant metabolism but does not alter lignin content. Salvato F, Wilson R, Llerena JPP, Kiyota E, Reis KL, Boaretto LF, Balbuena TS, Azevedo RA, Thelen JJ, Mazzafera P. Journal of Proteome Research; 16(10):3688-3703.

Date published: October 6, 2017
Featured in this article: Jay Thelen.

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Gα and regulator of G-protein signaling (RGS) protein pairs maintain functional compatibility and conserved interaction interfaces throughout evolution despite frequent loss of RGS proteins in plants. Hackenberg D, McKain MR, Lee SG, Roy Choudhury S, McCann T, Schreier S, Harkess A, Pires JC, Wong GK-S, Jez JM, Kellogg EA, Pandey S. New Phytologist; 216(2):562-575.

Date published: October 1, 2017
Featured in this article: J. Chris Pires.

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A Fluorescent Split Aptamer for Visualizing RNA-RNA Assembly in Vivo. Alam KK, Tawiah KD, Lichte MF, Porciani D, Burke DH. ACS Synthetic Biology; 6(9):1710-1721.

Date published: September 15, 2017
Featured in this article: David Porciani, Donald Burke-Agüero.

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Toward the selection of cell targeting aptamers with extended biological functionalities to facilitate endosomal escape of cargoes. Tawiah KD, Porciani D, Burke DH. Biomedicines; 5(3):51.

Date published: September 1, 2017
Featured in this article: David Porciani, Donald Burke-Agüero.

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Astrocyte-produced miR-146a as a mediator of motor neuron loss in spinal muscular atrophy. Sison SL, Patitucci TN, Seminary ER, Villalon E, Lorson CL, Ebert AD. Human Molecular Genetics; 26(17):3409-3420.

Date published: September 1, 2017
Featured in this article: Christian Lorson.

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Host and pathogen copper-transporting P-type ATPases function antagonistically during Salmonella infection. Ladomersky E, Khan A, Shanbhag V, Cavet JS, Chan J, Weisman GA, Petris MJ. Infection and Immunity; 85(9):e00351-17.

Date published: September 1, 2017
Featured in this article: Aslam Khan, Vinit Shanbhag, Gary Weisman, Michael Petris.

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Subgenome dominance in an interspecific hybrid, synthetic allopolyploid, and a 140-year-old naturally established neo-allopolyploid monkeyflower. Edger PP, Smith R, McKain MR, Cooley AM, Vallejo-Marin M, Yuan Y, Bewick AJ, Ji L, Platts AE, Bowman MJ, Childs KL, Washburn JD, Schmitz RJ, Smith GD, Pires JC, Puzey JR. Plant Cell; 29(9):2150-2167.

Date published: September 1, 2017
Featured in this article: J. Chris Pires.

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Analysis of Azithromycin Monohydrate as a Single or a Combinatorial Therapy in a Mouse Model of Severe Spinal Muscular Atrophy. Osman EY, Washington CW, Simon ME, Megiddo D, Greif H, Lorson CL. Journal of Neuromuscular Diseases; 4(3):237-249.

Date published: August 29, 2017
Featured in this article: Christian Lorson.

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Molecular resources from transcriptomes in the brassicaceae family. Lopez L, Wolf EM, Pires JC, Edger PP, Koch MA. Frontiers in Plant Science; 8:1488.

Date published: August 29, 2017
Featured in this article: J. Chris Pires.

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Genetic dissection of Arabidopsis MAP kinase phosphatase 1-dependent PAMP-induced transcriptional responses. Jiang L, Wan Y, Anderson JC, Hou J, Islam SM, Cheng J, Peck SC. Journal of Experimental Botany; 68(18):5207-5220.

Date published: August 15, 2017
Featured in this article: Scott Peck.

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Comparative proteomic analysis provides insight into the biological role of protein phosphatase inhibitor-2 from Arabidopsis. Ahsan N, Chen M, Salvato F, Wilson RS, Shyama Prasad Rao R, Thelen JJ. Journal of Proteomics; 165:51-60.

Date published: August 8, 2017
Featured in this article: Jay Thelen.

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The GmFWL1 (FW2-2-like) nodulation gene encodes a plasma membrane microdomain-associated protein. Qiao Z, Brechenmacher L, Smith B, Strout GW, Mangin W, Taylor C, Russell SD, Stacey G, Libault M. Plant Cell and Environment; 40(8):1442-1455.

Date published: August 1, 2017
Featured in this article: Gary Stacey.

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Anatolian origins and diversification of aethionema, the sister lineage of the core brassicaceae. Mohammadin S, Peterse K, van de Kerke SJ, Chatrou LW, Dönmez AA, Mummenhoff K, Pires JC, Edger PP, Al-Shehbaz IA, Schranz ME. American Journal of Botany; 104(7):1042-1054.

Date published: July 25, 2017
Featured in this article: J. Chris Pires.

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Sphingosine 1-phosphate lyase enhances the activation of IKK to promote type i IFN-mediated innate immune responses to influenza a virus infection. Vijayan M, Xia C, Song YE, Ngo H, Studstill CJ, Drews K, Fox TE, Johnson MC, Hiscott J, Kester M, Alexander S, Hahm B. Journal of Immunology; 199(2):677-687.

Date published: July 15, 2017
Featured in this article: Marc Johnson.

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A role for the ATP7A copper transporter in tumorigenesis and cisplatin resistance. Zhu S, Shanbhag V, Wang Y, Lee J, Petris M. Journal of Cancer; 8(11):1952-1958.

Date published: July 5, 2017
Featured in this article: Vinit Shanbhag, Michael Petris.

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Regulation of inflammation by lipid mediators in oral diseases. Sommakia S, Baker OJ. Oral Diseases; 23(5):576-597.

Date published: July 1, 2017
Featured in this article: Olga Baker.

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L1 Peptide-Conjugated Fibrin Hydrogels Promote Salivary Gland Regeneration. Nam K, Wang C-S, Maruyama CLM, Lei P, Andreadis ST, Baker OJ. Journal of Dental Research; 96(7):798-806.

Date published: July 1, 2017
Featured in this article: Kihoon Nam, Olga Baker.

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Foundational and translational research opportunities to improve plant health. Michelmore R, Coaker G, Bart R, Beattie G, Bent A, Bruce T, Cameron D, Dangl J, Dinesh-Kumar S, Edwards R, Eves-Van Den Akker S, Gassmann W, Greenberg JT, Hanley-Bowdoin L, Harrison RJ, He P, Harvey J, Huffaker A, Hulbert S, Innes R, Jones JDG, Kaloshian I, Kamoun S, Katagiri F, Leach J, Ma W, McDowell J, Medford J, Meyers B, Nelson R, Oliver R, Qi Y, Saunders D, Shaw M, Smart C, Subudhi P, Torrance L, Tyler B, Valent B, Walsh J. Molecular Plant-Microbe Interactions; 30(7):515-516.

Date published: July 1, 2017
Featured in this article: Walter Gassmann.

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Genomic inferences of domestication events are corroborated by written records in Brassica rapa. Qi X, An H, Ragsdale AP, Hall TE, Gutenkunst RN, Chris Pires J, Barker MS. Molecular Ecology; 26(13):3373-3388.

Date published: July 1, 2017
Featured in this article: Hong An, J. Chris Pires.

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Laser-ablation electrospray ionization mass spectrometry with ion mobility separation reveals metabolites in the symbiotic interactions of soybean roots and rhizobia. Stopka SA, Agtuca BJ, Koppenaal DW, Paša-Tolić L, Stacey G, Vertes A, Anderton CR. Plant Journal; 91(2):340-354.

Date published: July 1, 2017
Featured in this article: Gary Stacey.

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Medicago truncatula Oleanolic-Derived Saponins Are Correlated with Caterpillar Deterrence. Cai F, Watson BS, Meek D, Huhman DV, Wherritt DJ, Ben C, Gentzbittel L, Driscoll BT, Sumner LW, Bede JC. Journal of Chemical Ecology; 43(7):712-724.

Date published: July 1, 2017
Featured in this article: Lloyd Sumner.

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Diurnal cycling of rhizosphere bacterial communities is associated with shifts in carbon metabolism. Staley C, Ferrieri AP, Tfaily MM, Cui Y, Chu RK, Wang P, Shaw JB, Ansong CK, Brewer H, Norbeck AD, Markillie M, do Amaral F, Tuleski T, Pellizzaro T, Agtuca B, Ferrieri R, Tringe SG, Paša-Tolić L, Stacey G, Sadowsky MJ. Microbiome; 5(1):65.

Date published: June 24, 2017
Featured in this article: Yaya Cui, Gary Stacey.

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Discovery of a Small Molecule Probe That Post-Translationally Stabilizes the Survival Motor Neuron Protein for the Treatment of Spinal Muscular Atrophy. Rietz A, Li H, Quist KM, Cherry JJ, Lorson CL, Burnett BG, Kern NL, Calder AN, Fritsche M, Lusic H, Boaler PJ, Choi S, Xing X, Glicksman MA, Cuny GD, Androphy EJ, Hodgetts KJ. Journal of Medicinal Chemistry; 60(11):4594-4610.

Date published: June 8, 2017
Featured in this article: Christian Lorson.

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RNA-protein interactions govern antiviral specificity and encapsidation of broad spectrum anti-HIV reverse transcriptase aptamers. Lange MJ, Nguyen PDM, Callaway MK, Johnson MC, Burke DH. Nucleic Acids Research; 45(10):6087-6097.

Date published: June 2, 2017
Featured in this article: Margaret Lange, Marc Johnson, Donald Burke-Agüero.

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Reactive oxygen species, abiotic stress and stress combination. Choudhury FK, Rivero RM, Blumwald E, Mittler R. Plant Journal; 90(5):856-867.

Date published: June 1, 2017
Featured in this article: Ron Mittler.

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Insights into the evolution of hydroxyproline-rich glycoproteins from 1000 plant transcriptomes. Johnson KL, Cassin AM, Lonsdale A, Wong GK-S, Soltis DE, Miles NW, Melkonian M, Melkonian B, Deyholos MK, Leebens-Mack J, Rothfels CJ, Stevenson DW, Graham SW, Wang X, Wu S, Pires JC, Edger PP, Carpenter EJ, Bacic A, Doblin MS, Schultz CJ. Plant Physiology; 174(2):904-921.

Date published: June 1, 2017
Featured in this article: J. Chris Pires.

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3-hydroxypyrimidine-2,4-diones as novel hepatitis b virus antivirals targeting the viral ribonuclease H. Huber AD, Michailidis E, Tang J, Puray-Chavez MN, Boftsi M, Wolf JJ, Boschert KN, Sheridan MA, Leslie MD, Kirby KA, Singh K, Mitsuya H, Parniak MA, Wang Z, Sarafianos SG. Antimicrobial Agents and Chemotherapy; 61(6):e00245-17.

Date published: June 1, 2017
Featured in this article: Kamlendra Singh.

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The oil-contaminated soil diazotroph Azoarcus olearius DQS-4ᵀ is genetically and phenotypically similar to the model grass endophyte Azoarcus sp. BH72. Faoro H, Rene Menegazzo R, Battistoni F, Gyaneshwar, do Amaral FP, Taulé C, Rausch S, Gonçalves Galvão P, de los Santos C, Mitra S, Heijo G, Sheu S-Y, Chen W-M, Marwque C, Zibetti Tadra-Sfeir M, Ivo Baldani J, Maluk M, Paula Guimarães A, Stacey G, de Souza EM, Pedrosa FO, Magalhães Cruz L, James EK. Environmental Microbiology Reports; 9(3):223-238.

Date published: June 1, 2017
Featured in this article: Gary Stacey.

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Arabidopsis E3 ubiquitin ligase PLANT U-BOX13 (PUB13) regulates chitin receptor LYSIN MOTIF RECEPTOR KINASE5 (LYK5) protein abundance. Liao D, Cao Y, Sun X, Espinoza C, Nguyen CT, Liang Y, Stacey G. New Phytologist; 214(4):1646-1656.

Date published: June 1, 2017
Featured in this article: Gary Stacey.

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Genetic dissection of the maize (Zea mays L.) MAMP response. Zhang X, Valdés-López O, Arellano, Stacey G, Balint-Kurti P. Theoretical and Applied Genetics; 130(6):1155-1168.

Date published: June 1, 2017
Featured in this article: Gary Stacey.

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Quantitative proteomics analysis of leaves from two Sedum alfredii (Crassulaceae) populations that differ in cadmium accumulation. Zhang Z, Zhou H, Yu Q, Li Y, Mendoza-Cózatl DG, Qiu B, Liu P, Chen Q. Proteomics; 17(10):1600456.

Date published: May 1, 2017
Featured in this article: David Mendoza-Cózatl.

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Orchestrating rapid long-distance signaling in plants with Ca2+, ROS and electrical signals. Choi W-G, Miller G, Wallace I, Harper J, Mittler R, Gilroy S. Plant Journal; 90(4):698-707.

Date published: May 1, 2017
Featured in this article: Ron Mittler.

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Water-deficit-induced changes in transcription factor expression in maize seedlings. Seeve CM, Cho I-J, Hearne LB, Srivastava GP, Joshi T, Smith DO, Sharp RE, Oliver MJ. Plant Cell and Environment; 40(5):686-701.

Date published: May 1, 2017
Featured in this article: Trupti Joshi.

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Molecular and functional bases of selection against a mutation bias in an RNA virus. De La Higuera I, Ferrer-Octa C, De Ávila AI, Perales C, Sierra M, Singh K, Sarafianos SG, Dehouck Y, Bastolla U, Verdaguer N, Domingo E. Genome Biology and Evolution; 9(5):1212-1228.

Date published: May 1, 2017
Featured in this article: Kamlendra Singh.

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The Role of Plant Innate Immunity in the Legume-Rhizobium Symbiosis. Cao Y, Halane MK, Gassmann W, Stacey G. Annual Review of Plant Biology; 68:535-561.

Date published: April 28, 2017
Featured in this article: Walter Gassmann, Gary Stacey.

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Interactions between mito NEET and NAF-1 in cells. Karmi O, Holt SH, Song L, Tamir S, Luo Y, Bai F, Adenwalla A, Darash-Yahana M, Sohn Y-S, Jennings PA, Azad RK, Onuchic JN, Morcos F, Nechushtai R, Mittler R. PLoS ONE; 12(4):e0175796.

Date published: April 1, 2017
Featured in this article: Ron Mittler.

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Divergent cytosine DNA methylation patterns in single-cell, soybean root hairs. Hossain MS, Kawakatsu T, Kim KD, Zhang N, Nguyen CT, Khan SM, Batek JM, Joshi T, Schmutz J, Grimwood J, Schmitz RJ, Xu D, Jackson SA, Ecker JR, Stacey G. New Phytologist; 214(2):808-819.

Date published: April 1, 2017
Featured in this article: Trupti Joshi, Dong Xu, Gary Stacey.

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AT-RvD1 Promotes Resolution of Inflammation in NOD/ShiLtJ mice. Wang C-S, Maruyama CL, Easley JT, Trump BG, Baker OJ. Scientific Reports; 7:45525.

Date published: March 31, 2017
Featured in this article: Olga Baker.

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The interactome of the copper transporter ATP7A belongs to a network of neurodevelopmental and neurodegeneration factors. Comstra HS, McArthy J, Rudin-Rush S, Hartwig C, Gokhale A, Zlatic SA, Blackburn JB, Werner E, Petris M, D’Souza P, Panuwet P, Barr DB, Lupashin V, Vrailas-Mortimer A, Faundez V. eLife; 6:e24722.

Date published: March 29, 2017
Featured in this article: Michael Petris.

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Selective Inactivation of Functional RNAs by Ribozyme-Catalyzed Covalent Modification. Poudyal RR, Benslimane M, Lokugamage MP, Callaway MK, Staller S, Burke DH. ACS Synthetic Biology; 6(3):528-534.

Date published: March 17, 2017
Featured in this article: Donald Burke-Agüero.

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Population structure and phylogenetic relationships in a diverse panel of Brassica rapa L. Bird KA, An H, Gazave E, Gore MA, Pires JC, Robertson LD, Labate JA. Frontiers in Plant Science; 8:321.

Date published: March 13, 2017
Featured in this article: Hong An, J. Chris Pires.

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Small molecule inhibitors block Gas6-inducible TAM activation and tumorigenicity. Kimani SG, Kumar S, Bansal N, Singh K, Kholodovych V, Comollo T, Peng Y, Kotenko SV, Sarafianos SG, Bertino JR, Welsh WJ, Birge RB. Scientific Reports; 7:43908.

Date published: March 8, 2017
Featured in this article: Kamlendra Singh.

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Three-dimensional cultures of mouse submandibular and parotid glands: a comparative study. Leigh, N.J.a, Nelson, J.W.a, Mellas, R.E.a, McCall, A.D.b, Baker, O.J. Journal of Tissue Engineering and Regenerative Medicine; 11(3):618-626.

Date published: March 1, 2017
Featured in this article: Olga Baker.

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Methods for observing and quantifying muscle satellite cell motility and invasion in vitro. Lund DK, McAnulty P, Siegel AL, Cornelison D. Methods in Molecular Biology; 1556:303-315.

Date published: March 1, 2017
Featured in this article: D Cornelison.

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Muscle stem cells: A model system for adult stem cell biology. Cornelison DDW, Perdiguero E. Methods in Molecular Biology; 1556:3-19.

Date published: March 1, 2017
Featured in this article: D Cornelison.

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Comparison of independent screens on differentially vulnerable motor neurons reveals alpha-synuclein as a common modifier in motor neuron diseases. Kline RA, Kaifer KA, Osman EY, Carella F, Tiberi A, Ross J, Pennetta G, Lorson CL, Murray LM. PLoS Genetics; 13(3):e1006680.

Date published: March 1, 2017
Featured in this article: Christian Lorson.

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SMN deficiency negatively impacts red pulp macrophages and spleen development in mouse models of spinal muscular atrophy. Khairallah M-T, Astroski J, Custer SK, Androphy EJ, Franklin CL, Lorson CL. Human Molecular Genetics; 26(5):932-941.

Date published: March 1, 2017
Featured in this article: Christian Lorson.

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Chitin receptor CERK1 links salt stress and chitin-triggered innate immunity in Arabidopsis. Espinoza C, Liang Y, Stacey G. Plant Journal; 89(5):984-995.

Date published: March 1, 2017
Featured in this article: Gary Stacey.

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Fluorescence In Situ Hybridization for Glycine max Metaphase Chromosomes. Findley SD, Birchler JA, Stacey G. Current protocols in plant biology; 2(1):89-107.

Date published: March 1, 2017
Featured in this article: Gary Stacey.

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Metaphase Chromosome Preparation from Soybean (Glycine max) Root Tips. Findley SD, Birchler JA, Stacey G. Current protocols in plant biology; 2(1):78-88.

Date published: March 1, 2017
Featured in this article: Gary Stacey.

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The proteome of higher plant mitochondria. Rao RSP, Salvato F, Thal B, Eubel H, Thelen JJ, Møller IM. Mitochondrion; 33:22-37.

Date published: March 1, 2017
Featured in this article: Jay Thelen.

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Editorial. Møller IM, Thelen JJ. Mitochondrion; 33:1.

Date published: March 1, 2017
Featured in this article: Jay Thelen.

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Current cell models for bioengineering salivary glands. Baker, OJ. Salivary Gland Development and Regeneration: Advances in Research and Clinical Approaches to Functional Restoration; 133-144.

Date published: February 20, 2017
Featured in this article: Olga Baker.

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Nucleobase modification by an RNA enzyme. Poudyal RR, Nguyen PDM, Lokugamage MP, Callaway MK, Gavette JV, Krishnamurthy R, Burke DH. Nucleic Acids Research; 45(3):1345-1354.

Date published: February 17, 2017
Featured in this article: Donald Burke-Agüero.

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Phylogenetic analysis of eukaryotic NEET proteins uncovers a link between a key gene duplication event and the evolution of vertebrates. Inupakutika MA, Sengupta S, Nechushtai R, Jennings PA, Onuchic JN, Azad RK, Padilla P, Mittler R. Scientific Reports; 7:42571.

Date published: February 16, 2017
Featured in this article: Ron Mittler.

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Muscle spindle alterations precede onset of sensorimotor deficits in Charcot–Marie–Tooth type 2E. Villalón E, Jones MR, Sibigtroth C, Zino SJ, Dale JM, Landayan DS, Shen H, Cornelison DDW, Garcia ML. Genes, Brain and Behavior; 16(2):260-270.

Date published: February 1, 2017
Featured in this article: Hai Lian Shen, D Cornelison.

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Evidence for the involvement of electrical, calcium and ROS signaling in the systemic regulation of non-photochemical quenching and photosynthesis. Białasek M, Górecka M, Mittler R, Karpiński S. Plant and Cell Physiology; 58(2):207-215.

Date published: February 1, 2017
Featured in this article: Ron Mittler.

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Simplified enrichment of plasma membrane proteins from Arabidopsis thaliana seedlings using differential centrifugation and Brij-58 treatment. Collins CA, Leslie ME, Peck SC, Heese A. Methods in Molecular Biology; 1564:155-168.

Date published: January 26, 2017
Featured in this article: Scott Peck.

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Gene Therapy for Spinal Muscular Atrophy. Miller MR, Osman EY, Lorson CL. Molecular and Cellular Therapies for Motor Neuron Diseases; 233-250.

Date published: January 19, 2017
Featured in this article: Christian Lorson.

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End-to-end security formalization and alignment for federated workflow management. Dickinson M, Debroy S, Calyam P, Valluripally S, Zhang Y, Joshi T, Xu D. IEEE International Conference on Cloud Computing, CLOUD; 59-67.

Date published: January 17, 2017
Featured in this article: Trupti Joshi, Dong Xu.

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Physiological Mg2+ conditions significantly alter the inhibition of HIV-1 and HIV-2 Reverse transcriptases by nucleoside and non-nucleoside inhibitors in vitro. Achuthan V, Singh K, Destefano JJ. Biochemistry; 56(1):33-46.

Date published: January 10, 2017
Featured in this article: Kamlendra Singh.

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Structure of the human monomeric NEET protein MiNT and its role in regulating iron and reactive oxygen species in cancer cells. Lipper CH, Karmi O, Sohn YS, Darash-Yahana M, Lammert H, Song L, Liu A, Mittler R, Nechushtai R, Onuchic JN, Jennings PA. Proceedings of the National Academy of Sciences of the United States of America; 115(2):272-277.

Date published: January 9, 2017
Featured in this article: Ron Mittler.

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Network-guided GWAS improves identification of genes affecting free amino acids. Angelovici R, Batushansky A, Deason N, Gonzalez-Jorge S, Gore MA, Fait A, Dellapenna D. Plant Physiology; 173(1):872-886.

Date published: January 1, 2017
Featured in this article: Ruthie Angelovici.

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Contributions of Different Cell Types to Spinal Muscular Atrophy Pathogenesis. Deguise MO, Patitucci TN, Ebert AD, Lorson CL, Kothary R. Spinal Muscular Atrophy: Disease Mechanisms and Therapy; 167-181.

Date published: January 1, 2017
Featured in this article: Christian Lorson.

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Moderate to severe water limitation differentially affects the phenome and ionome of Arabidopsis. Acosta-Gamboa LM, Liu S, Langley E, Campbell Z, Castro-Guerrero N, Mendoza-Cozatl D, Lorence A. Functional Plant Biology; 44(1):94-106.

Date published: January 1, 2017
Featured in this article: Norma Castro-Guerrero, David Mendoza-Cózatl.

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ROS Are Good. Mittler R. Trends in Plant Science; 22(1):11-19.

Date published: January 1, 2017
Featured in this article: Ron Mittler.

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The evolution of soybean knowledge base (SoyKB). Joshi T, Wang J, Zhang H, Chen S, Zeng S, Xu B, Xu D. Methods in Molecular Biology; 1533:149-159.

Date published: January 1, 2017
Featured in this article: Trupti Joshi, Dong Xu.

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Increased replication capacity following evolution of PYxE insertion in Gag-p6 is associated with enhanced virulence in HIV-1 subtype C from East Africa. Aralaguppe SG, Winner D, Singh K, Sarafianos SG, Quiñones-Mateu ME, Sönnerborg A, Neogi U. Journal of Medical Virology; 89(1):106-111.

Date published: January 1, 2017
Featured in this article: Kamlendra Singh.

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A 2-hydroxyisoquinoline-1,3-dione active-site RNase H inhibitor binds in multiple modes to HIV-1 reverse transcriptase. Kirby KA, Myshakina NA, Christen MT, Chen Y-L, Schmidt HA, Huber AD, Xi Z, Kim S, Rao RK, Kramer ST, Yang Q, Singh K, Parniak MA, Wang Z, Ishima R, Sarafianos SG. Antimicrobial Agents and Chemotherapy; 61(10).

Date published: January 1, 2017
Featured in this article: Kamlendra Singh.

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Molecular mechanism of plant recognition of extracellular ATP. Cho S-H, Nguyen CT, Choi J, Stacey G. Advances in Experimental Medicine and Biology; 1051:233-253.

Date published: January 1, 2017
Featured in this article: Gary Stacey.

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Two SERK receptor-like kinases interact with EMS1 to control anther cell fate determination. Li Z, Wang Y, Huang J, Ahsan N, Biener G, Paprocki J, Thelen JJ, Raicu V, Zhao D. Plant Physiology; 173(1):326-337.

Date published: January 1, 2017
Featured in this article: Jay Thelen.

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2016

Malonylation of glucosylated N-lauroylethanolamine: A new pathway that determines N-acylethanolamine metabolic fate in plants. Khan BR, Wherritt DJ, Huhman D, Sumner LW, Chapman KD, Blancaflor EB. Journal of Biological Chemistry; 291(53):27112-27121.

Date published: December 30, 2016
Featured in this article: Lloyd Sumner.

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Retraction: The SMN structure reveals its crucial role in snRNP assembly [Human Molecular Genetics, 24, 8, 2138-46]doi: 10.1093/hmg/ddu734. Seng CO, Magee C, Young PJ, Lorson CL, Allen JP. Human Molecular Genetics; 25(24):5516.

Date published: December 15, 2016
Featured in this article: Christian Lorson.

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PlantMAT: A metabolomics tool for predicting the specialized metabolic potential of a system and for large-scale metabolite identifications. Qiu F, Fine DD, Wherritt DJ, Lei Z, Sumner LW. Analytical Chemistry; 88(23):11373-11383.

Date published: December 6, 2016
Featured in this article: Zhentian Lei, Lloyd Sumner.

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The Evolution of HD2 Proteins in Green Plants. Bourque S, Jeandroz S, Grandperret V, Lehotai N, Aimé S, Soltis DE, Miles NW, Melkonian M, Deyholos MK, Leebens-Mack JH, Chase MW, Rothfels CJ, Stevenson DW, Graham SW, Wang X, Wu S, Pires JC, Edger PP, Yan Z, Xie Y, Carpenter EJ, Wong GKS, Wendehenne D, Nicolas-Francès V. Trends in Plant Science; 21(12):1008-1016.

Date published: December 1, 2016
Featured in this article: J. Chris Pires.

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Jasmonate-mediated stomatal closure under elevated CO₂ revealed by time-resolved metabolomics. Geng S, Misra BB, de Armas E, Huhman DV, Alborn HT, Sumner LW, Chen S. Plant Journal; 88(6):947-962.

Date published: December 1, 2016
Featured in this article: Lloyd Sumner.

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Robust Yet Fragile: Expression Noise, Protein Misfolding, and Gene Dosage in the Evolution of Genomes. Pires JC, Conant GC. Annual Review of Genetics; 50:113-131.

Date published: November 23, 2016
Featured in this article: J. Chris Pires.

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The pangenome of an agronomically important crop plant Brassica oleracea. Golicz AA, Bayer PE, Barker GC, Edger PP, Kim H, Martinez PA, Chan CKK, Severn-Ellis A, McCombie WR, Parkin IAP, Paterson AH, Pires JC, Sharpe AG, Tang H, Teakle GR, Town CD, Batley J, Edwards D. Nature Communications; 7:13390.

Date published: November 11, 2016
Featured in this article: J. Chris Pires.

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The evolution of reactive oxygen species metabolism. Inupakutika MA, Sengupta S, Devireddy AR, Azad RK, Mittler R. Journal of Experimental Botany; 67(21):5933-5943.

Date published: November 1, 2016
Featured in this article: Ron Mittler.

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Identification of homogentisate dioxygenase as a target for vitamin E biofortification in oilseeds. Stacey MG, Cahoon RE, Nguyen HT, Cui Y, Sato S, Nguyen CT, Phoka N, Clark KM, Liang Y, Forrester J, Batek J, Do PT, Sleper DA, Clemente TE, Cahoon EB, Stacey G. Plant Physiology; 172(3):1506-1518.

Date published: November 1, 2016
Featured in this article: Minviluz (Bing) Stacey, Yaya Cui, Gary Stacey.

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Sunflower HaGPAT9-1 is the predominant GPAT during seed development. Payá-Milans M, Aznar-Moreno JA, Balbuena TS, Haslam RP, Gidda SK, Pérez-Hormaeche J, Mullen RT, Thelen JJ, Napier JA, Salas JJ, Garcés R, Martínez-Force E, Venegas-Calerón M. Plant Science; 252:42-52.

Date published: November 1, 2016
Featured in this article: Jay Thelen.

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Soybean tip gene family analysis and characterization of GmTIP1;5 and GmTIP2;5 water transport activity. Song L, Nguyen N, Deshmukh RK, Patil GB, Prince SJ, Valliyodan B, Mutava R, Pike SM, Gassmann W, Nguyen HT. Frontiers in Plant Science; 7(OCTOBER2016):1564.

Date published: October 21, 2016
Featured in this article: Sharon Pike, Walter Gassmann.

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PGen: Large-scale genomic variations analysis workflow and browser in SoyKB. Liu Y, Khan SM, Wang J, Rynge M, Zhnag Y, Zeng S, Chen S, Maldonado dos Santos JV, Valliyodan B, Calyam PP, Merchant N, Nguyen HT, Xu D, Joshi T. BMC Bioinformatics; 17:337.

Date published: October 6, 2016
Featured in this article: Juexin Wang, Dong Xu, Trupti Joshi.

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AT-RvD1 combined with DEX is highly effective in treating TNF-α-mediated disruption of the salivary gland epithelium. Easley JT, Maruyama CLM, Wang C-S, Baker OJ. Physiological Reports; 4(19):e12990.

Date published: October 1, 2016
Featured in this article: Olga Baker.

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GLP-1-RA corrects mitochondrial labile iron accumulation and improves β-cell function in type 2 wolfram syndrome. Danielpur L, Sohn Y-S, Karmi O, Fogel C, Zinger A, Abu-Libdeh A, Israeli T, Riahi Y, Pappo O, Birk R, Zangen DH, Mittler R, Cabantchik Z-I, Cerasi E, Nechushtai R, Leibowitz G. Journal of Clinical Endocrinology and Metabolism; 101(10):3592-3599.

Date published: October 1, 2016
Featured in this article: Ron Mittler.

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ABA is required for the accumulation of APX1 and MBF1c during a combination of water deficit and heat stress. Zandalinas SI, Balfagón D, Arbona V, Gómez-Cadenas A, Inupakutika MA, Mittler R. Journal of Experimental Botany; 67(18):5381-5390.

Date published: October 1, 2016
Featured in this article: Ron Mittler.

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Timing of rapid diversification and convergent origins of active pollination within agavoideae (Asparagaceae). McKain MR, McNeal JR, Kellar PR, Eguiarte LE, Pires JC, Leebens-Mack J. American Journal of Botany; 103(10):1717-1729.

Date published: October 1, 2016
Featured in this article: J. Chris Pires.

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Breast cancer tumorigenicity is dependent on high expression levels of NAF-1 and the lability of its Fe-S clusters. Darash-Yahana M, Pozniak Y, Lu M, Sohn Y-S, Karmi O, Tamir S, Bai F, Song L, Jennings PA, Pikarsky E, Geiger T, Onuchic JN, Mittler R, Nechushtai R. Proceedings of the National Academy of Sciences of the United States of America; 113(39):10890-10895.

Date published: September 27, 2016
Featured in this article: Ron Mittler.

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Withania somnifera and Its Withanolides Attenuate Oxidative and Inflammatory Responses and Up-Regulate Antioxidant Responses in BV-2 Microglial Cells. Sun GY, Li R, Cui J, Hannink M, Gu Z, Fritsche KL, Lubahn DB, Simonyi A. NeuroMolecular Medicine; 18(3):241-252.

Date published: September 1, 2016
Featured in this article: Mark Hannink.

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Optimization of morpholino antisense oligonucleotides targeting the intronic repressor element1 in spinal muscular atrophy. Osman EY, Washington CW, Kaifer KA, Mazzasette C, Patitucci TN, Florea KM, Simon ME, Ko C-P, Ebert AD, Lorson CL. Molecular Therapy; 24(9):1592-1601.

Date published: September 1, 2016
Featured in this article: Christian Lorson.

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Plasma membrane proteomics in the maize primary root growth zone: novel insights into root growth adaptation to water stress. Voothuluru P, Anderson JC, Sharp RE, Peck SC. Plant Cell and Enviroment; 39(9):2043-2054.

Date published: September 1, 2016
Featured in this article: Scott Peck.

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Multiple di-leucines in the ATP7A copper transporter are required for retrograde trafficking to the trans-Golgi network. Zhu S, Shanbhag V, Hodgkinson VL, Petris MJ. Metallomics; 8(9):993-1001.

Date published: September 1, 2016
Featured in this article: Vinit Shanbhag, Michael Petris.

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Retrotransposon proliferation coincident with the evolution of dioecy in asparagus. Harkess A, Mercati F, Abbate L, McKain M, Pires JC, Sala T, Sunseri F, Falavigna A, Leebens-Mack J. G3: Genes, Genomes, Genetics; 6(9):2679-2685.

Date published: September 1, 2016
Featured in this article: J. Chris Pires.

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Computational analysis of the ligand binding site of the extracellular ATP receptor, DORN1. Nguyen CT, Tanaka K, Cao Y, Cho S-H, Xu D, Stacey G. PLoS ONE; 11(9):e0161894.

Date published: September 1, 2016
Featured in this article: Dong Xu, Gary Stacey.

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Regulation and structure of the heteromeric acetyl-CoA carboxylase. Salie MJ, Thelen JJ. Biochimica et Biophysica Acta - Molecular and Cell Biology of Lipids; 1861(9):1207-1213.

Date published: September 1, 2016
Featured in this article: Jay Thelen.

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Acyl-lipid desaturase 1 primes cold acclimation response in Arabidopsis. Chen M, Thelen JJ. Physiologia plantarum; 158(1):11-22.

Date published: September 1, 2016
Featured in this article: Jay Thelen.

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A family of negative regulators targets the committed step of de novo fatty acid biosynthesisopen. Salie MJ, Zhang N, Lancikova V, Xu D, Thelen JJ. Plant Cell; 28(9):2312-2325.

Date published: September 1, 2016
Featured in this article: Dong Xu, Jay Thelen.

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Structural basis of HIV inhibition by translocationdefective RT inhibitor 4′-ethynyl-2-fluoro-2′- deoxyadenosine (EFdA). Salie ZL, Kirby KA, Michailidis E, Marchand B, Singh K, Rohan LC, Kodama EN, Mitsuya H, Parniak MA, Sarafianos SG. Proceedings of the National Academy of Sciences of the United States of America; 113(33):9274-9279.

Date published: August 16, 2016
Featured in this article: Kamlendra Singh.

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Preparation of ribosomes for smFRET studies: A simplified approach. Shebl B, Menke DE, Pennella M, Poudyal RR, Burke DH, Cornish PV. Archives of Biochemistry and Biophysics; 603:118-130.

Date published: August 1, 2016
Featured in this article: Donald Burke-Agüero.

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Express yourself: Transcriptional regulation of plant innate immunity. Garner CM, Kim SH, Spears BJ, Gassmann W. Seminars in Cell and Developmental Biology; 56:150-162.

Date published: August 1, 2016
Featured in this article: Walter Gassmann.

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Spreading winge and flying high: The evolutionary importance of polyploidy after a century of study. Barker MS, Husband BC, Chris Pires J. American Journal of Botany; 103(7):1139-1145.

Date published: July 28, 2016
Featured in this article: J. Chris Pires.

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Hydroponics: A versatile system to study nutrient allocation and plant responses to nutrient availability and exposure to toxic elements. Nguyen NT, McInturf SA, Mendoza-Cózatl DG. Journal of Visualized Experiments; 2016(113):e54317.

Date published: July 13, 2016
Featured in this article: David Mendoza-Cózatl.

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Current trends in salivary gland tight junctions. Baker, OJ. Tissue Barriers; 4(3):e1162348.

Date published: July 2, 2016
Featured in this article: Olga Baker.

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ZEAXANTHIN EPOXIDASE activity potentiates carotenoid degradation in maturing seed. Gonzalez-Jorge S, Mehrshahi P, Magallanes-Lundback M, Lipka AE, Angelovici R, Gore MA, DellaPenna, D. Plant Physiology; 171(3):1837-1851.

Date published: July 1, 2016
Featured in this article: Ruthie Angelovici.

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Phytochemicals and botanical extracts regulate NF-κB and Nrf2/ARE reporter activities in di TNC1 astrocytes. Ajit D, Simonyi A, Li R, Chen Z, Hannink M, Fritsche KL, Mossine VV, Smith RE, Dobbs TK, Luo R, Folk WR, Gu Z, Lubahn DB, Weisman GA, Sun GY. Neurochemistry International; 97:49-56.

Date published: July 1, 2016
Featured in this article: Mark Hannink, Gary Weisman.

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ROS, calcium, and electric signals: Key mediators of rapid systemic signaling in plants. Gilroy S, Białasek M, Suzuki N, Górecka M, Devireddy AR, Karpiński S, Mittler R. Plant Physiology; 171(3):1606-1615.

Date published: July 1, 2016
Featured in this article: Ron Mittler.

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Recent progress in understanding the role of reactive oxygen species in plant cell signaling. Dietz K-J, Mittler R, Noctor G. Plant Physiology; 171(3):1535-1539.

Date published: July 1, 2016
Featured in this article: Ron Mittler.

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Evolutionary relationships in Panicoid grasses based on plastome phylogenomics (Panicoideae; Poaceae). Burke SV, Wysocki WP, Zuloaga FO, Craine JM, Pires JC, Edger PP, Mayfield-Jones D, Clark LG, Kelchner SA, Duvall MR. BMC Plant Biology; 16(1):140.

Date published: June 18, 2016
Featured in this article: J. Chris Pires.

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Accumulation of flavonols over hydroxycinnamic acids favors oxidative damage protection under abiotic stress. Martinez V, Mestre TC, Rubio F, Girones-Vilaplana A, Moreno DA, Mittler R, Rivero RM. Frontiers in Plant Science; 7(JUNE2016):838.

Date published: June 15, 2016
Featured in this article: Ron Mittler.

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Laminin-111 Peptides Conjugated to Fibrin Hydrogels Promote Formation of Lumen Containing Parotid Gland Cell Clusters. Nam K, Jones JP, Lei P, Andreadis ST, Baker OJ. Biomacromolecules; 17(6):2293-2301.

Date published: June 13, 2016
Featured in this article: Kihoon Nam, Olga Baker.

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DHX9/RHA Binding to the PBS-Segment of the Genomic RNA during HIV-1 Assembly Bolsters Virion Infectivity. Boeras I, Song Z, Moran A, Franklin J, Brown WC, Johnson M, Boris-Lawrie K, Heng X. Journal of Molecular Biology; 428(11):2418-2429.

Date published: June 5, 2016
Featured in this article: Marc Johnson.

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Enhanced cadmium efflux and root-to-shoot translocation are conserved in the hyperaccumulator Sedum alfredii (Crassulaceae family). Zhang Z, Yu Q, Du H, Ai W, Yao X, Mendoza-Cózatl DG, Qiu B. FEBS Letters; 1757-1764.

Date published: June 1, 2016
Featured in this article: David Mendoza-Cózatl.

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The Raf-like kinase ILK1 and the high affinity K⁺ transporter HAK5 are required for innate immunity and abiotic stress response. Brauer EK, Ahsan N, Dale R, Kato N, Coluccio AE, Piñeros MA, Kochian LV, Thelen JJ, Popescu SC. Plant Physiology; 171(2):1470-1484.

Date published: June 1, 2016
Featured in this article: Jay Thelen.

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Metabolite variation in hybrid corn grain from a large-scale multisite study. Chen M, Rao RSP, Zhang Y, Zhong C, Thelen JJ. Crop Journal; 4(3):177-187.

Date published: June 1, 2016
Featured in this article: Jay Thelen.

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Diversity of ABC transporter genes across the plant kingdom and their potential utility in biotechnology. Lane TS, Rempe CS, Davitt J, Staton ME, Peng Y, Soltis DE, Melkonian M, Deyholos M, Leebens-Mack JH, Chase M, Rothfels CJ, Stevenson D, Graham SW, Yu J, Liu T, Pires JC, Edger PP, Zhang Y, Xie Y, Zhu Y, Carpenter E, Wong GK-S, Stewart CN Jr. BMC Biotechnology; 16(1):47.

Date published: May 31, 2016
Featured in this article: J. Chris Pires.

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In vivo analysis of infectivity, fusogenicity, and incorporation of a mutagenic viral glycoprotein library reveals determinants for virus incorporation. Salamango DJ, Alam KK, Burke DH, Johnson MC. Journal of Virology; 90(14):6502-6514.

Date published: May 4, 2016
Featured in this article: Donald Burke-Agüero, Marc Johnson.

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Common bean: A legume model on the rise for unraveling responses and adaptations to iron, zinc, and phosphate deficiencies. Castro-Guerrero NA, Isidra-Arellano MC, Mendoza-Cozat DG, Valdés-López O. Frontiers in Plant Science; 7(May 2016):600.

Date published: May 3, 2016
Featured in this article: Norma Castro-Guerrero, David Mendoza-Cózatl.

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The Arabidopsis immune regulator SRFR1 dampens defences against herbivory by Spodoptera exigua and parasitism by Heterodera schachtii. Nguyen PDT, Pike S, Wang J, Nepal Poudel A, Heinz R, Schultz JC, Koo AJ, Mitchum MG, Appel HM, Gassmann W. Molecular Plant Pathology; 17(4):588-600.

Date published: May 1, 2016
Featured in this article: Sharon Pike, Jianying Wang, Walter Gassmann.

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Rescue of a mouse model of spinal muscular atrophy with respiratory distress type 1 by AAV9-IGHMBP2 is dose dependent. Shababi M, Feng Z, Villalon E, Sibigtroth CM, Osman EY, Miller MR, Williams-Simon PA, Lombardi A, Sass TH, Atkinson AK, Garcia ML, Ko C-P, Lorson CL. Molecular Therapy; 24(5):855-866.

Date published: May 1, 2016
Featured in this article: Christian Lorson.

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Convergent evolution and the origin of complex phenotypes in the age of systems biology. Washburn JD, Bird KA, Conant GC, Pires JC. International Journal of Plant Sciences; 177(4):305-318.

Date published: May 1, 2016
Featured in this article: J. Chris Pires.

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Post-irradiated human submandibular glands display high collagen deposition, disorganized cell junctions, and an increased number of adipocytes. Nam K, Maruyama CL, Trump BG, Buchmann L, Hunt JP, Monroe MM, Baker OJ. Journal of Histochemistry and Cytochemistry; 64(6):343-352.

Date published: April 28, 2016
Featured in this article: Kihoon Nam, Olga Baker.

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Soybean roots grown under heat stress show global changes in their transcriptional and proteomic profiles. Valdés-López O, Batek J, Gomez-Hernandez N, Nguyen CT, Isidra-Arellano MC, Zhang N, Joshi T, Xu D, Hixson KK, Weitz KK, Alrich JT, Paša-Tolić L, Stacey G. Frontiers in Plant Science; 7(APR2016):517.

Date published: April 25, 2016
Featured in this article: Trupti Joshi, Dong Xu, Gary Stacey.

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ALX/FPR2 modulates anti-inflammatory responses in mouse submandibular gland. Wang C-S, Wee Y, Yang C-H, Melvin JE, Baker OJ. Scientific Reports; 6:24244.

Date published: April 11, 2016
Featured in this article: Olga Baker.

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Evaluation of a custom single Peltier-cooled ablation cell for elemental imaging of biological samples in laser ablation-inductively coupled plasma-mass spectrometry (LA-ICP-MS). Hamilton JS, Gorishek EL, Mach PM, Sturtevant D, Ladage ML, Suzuki N, Padilla PA, Mittler R, Chapman KD, Verbeck GF. Journal of Analytical Atomic Spectrometry; 31(4):1030-1033.

Date published: April 1, 2016
Featured in this article: Ron Mittler.

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Editorial overview: Genome studies and molecular genetics: Of plant genes, genomes, and genomics. Van de Peer Y, Pires JC. Current Opinion in Plant Biology; 30:iv-vi.

Date published: April 1, 2016
Featured in this article: J. Chris Pires.

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Virological failure in patients with HIV-1 subtype C receiving antiretroviral therapy: an analysis of a prospective national cohort in Sweden. Häggblom A, Svedhem V, Singh K, Sönnerborg A, Neogi U. The Lancet HIV; 3(4):e166-e174.

Date published: April 1, 2016
Featured in this article: Kamlendra Singh.

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Differential growth responses of Brachypodium distachyon genotypes to inoculation with plant growth promoting rhizobacteria. do Amaral FP, Pankievicz VCS, Arisi ACM, de Souza EM, Pedrosa F, Stacey G. Plant Molecular Biology; 90(6):689-697.

Date published: April 1, 2016
Featured in this article: Gary Stacey.

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Landscape of genomic diversity and trait discovery in soybean. Valliyodan B, Dan Qiu, Patil G, Zeng P, Huang J, Dai L, Chen C, Li Y, Joshi T, Song L, Vuong TD, Musket TA, Xu D, Shannon JG, Shifeng C, Liu X, Nguyen HT. Scientific Reports; 6:23598.

Date published: March 31, 2016
Featured in this article: Trupti Joshi, Dong Xu.

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A phylogenomic assessment of ancient polyploidy and genome evolution across the poales. McKain MR, Tang H, McNeal JR, Ayyampalayam S, Davis JI, Depamphilis CW, Givnish TJ, Chris Pires J, Stevenson DW, Leebens-Mack JH. Genome Biology and Evolution; 8(4):1150-1164.

Date published: March 17, 2016
Featured in this article: J. Chris Pires.

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Identification of AtOPT4 as a Plant Glutathione Transporter. Zhang Z, Xie Q, Jobe TO, Kau AR, Wang C, Li Y, Qiu B, Wang Q, Mendoza-Cózatl DG, Schroeder JI. Molecular Plant; 9(3):481-484.

Date published: March 7, 2016
Featured in this article: David Mendoza-Cózatl.

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Preface. Gassmann W, Appel HM, Oliver MJ. Journal of Experimental Botany; 67(7):2023-2024.

Date published: March 1, 2016
Featured in this article: Walter Gassmann.

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An Improved Transient Expression System Using Arabidopsis Protoplasts. Cao Y, Li H, Pham AQ, Stacey G. Current Protocols In Plant Biology; 1(2):285-291.

Date published: March 1, 2016
Featured in this article: Gary Stacey.

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Evaluation of genetic variation among Brazilian soybean cultivars through genome resequencing. dos Santos JVM, Valliyodan B, Joshi T, Khan SM, Liu Y, Wang J, Vuong TD, de Oliveira MF, Marcelino-Guimarães FC, Xu D, Nguyen HT, Abdelnoor RV. BMC Genomics; 17(1):110.

Date published: February 13, 2016
Featured in this article: Trupti Joshi, Juexin Wang, Dong Xu.

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Resolution of brassicaceae phylogeny using nuclear genes uncovers nested radiations and supports convergent morphological evolution. Huang C-H, Sun R, Hu Y, Zeng L, Zhang N, Cai L, Zhang Q, Koch MA, Al-Shehbaz I, Edger PP, Pires JC, Tan D-Y, Zhong Y, Ma H. Molecular Biology and Evolution; 33(2):394-412.

Date published: February 1, 2016
Featured in this article: J. Chris Pires.

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Factors influencing the efficacy of rilpivirine in HIV-1 subtype C in low- and middle-income countries. Neogi U, Häggblom A, Singh K, Rogers LC, Rao SD, Amogne W, Schülter E, Zazzi M, Arnold E, Sarafianos SG, Sönnerborg A. Journal of Antimicrobial Chemotherapy; 71(2):367-371.

Date published: February 1, 2016
Featured in this article: Kamlendra Singh.

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Placental development in a mouse model of spinal muscular atrophy. Van Gronigen Caesar G, Dale JM, Osman EY, Garcia ML, Lorson CL, Schulz LC. Biochemical and Biophysical Research Communications; 470(1):82-87.

Date published: January 29, 2016
Featured in this article: Christian Lorson.

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An NF-κB – EphrinA5-Dependent Communication between NG2+ Interstitial Cells and Myoblasts Promotes Muscle Growth in Neonates. Gu J-M, Wang DJ, Peterson JM, Shintaku J, Liyanarachchi S, Coppola V, Frakes AE, Kaspar BK, Cornelison DD, Guttridge DC. Developmental Cell; 36(2):215-224.

Date published: January 25, 2016
Featured in this article: D Cornelison.

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Genome-wide transcriptome analysis of soybean primary root under varying water-deficit conditions. Song L, Prince S, Valliyodan B, Joshi T, Maldonado dos Santos JV, Wang J, Lin L, Wan J, Wang Y, Xu D, Nugyen HT. BMC Genomics; 17(1):57.

Date published: January 15, 2016
Featured in this article: Trupti Joshi, Dong Xu.

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Selecting superior de novo transcriptome assemblies: Lessons learned by leveraging the best plant genome. Honaas LA, Wafula EK, Wickett NJ, Der JP, Zhang Y, Edger PP, Altman NS, Chris Pires J, Leebens-Mack JH, DePamphilis CW. PLoS ONE; 11(1):e0146062.

Date published: January 5, 2016
Featured in this article: J. Chris Pires.

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RDF Sketch Maps – Knowledge complexity reduction for precision medicine analytics. Thanintorn N, Wang J, Ersoy I, Al-Taie Z, Jiang Y, Wang D, Verma M, Joshi T, Hammer R, Xu D, Shin D. Pacific Symposium on Biocomputing; 417-428.

Date published: January 4, 2016
Featured in this article: Juexin Wang, Yuexu Jiang, Duolin Wang, Trupti Joshi, Dong Xu.

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Activation of apoptosis in NAF-1-deficient human epithelial breast cancer cells. Holt SH, Darash-Yahana M, Sohn YS, Song L, Karmi O, Tamir S, Michaeli D, Luo Y, Paddock ML, Jennings PA, Onuchic JN, Azad RK, Pikarsky E, Cabantchik IZ, Nechushtai R, Mittler R. Journal of Cell Science; 129(1):155-165.

Date published: January 1, 2016
Featured in this article: Ron Mittler.

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ABA is required for plant acclimation to a combination of salt and heat stress. Suzuki N, Bassil E, Hamilton JS, Inupakutika MA, Zandalinas SI, Tripathy D, Luo Y, Dion E, Fukui G, Kumazaki A, Nakano R, Rivero RM, Verbeck GF, Azad RK, Blumwald E, Mittler R. PLoS ONE; 11(1):0147625.

Date published: January 1, 2016
Featured in this article: Ron Mittler.

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The Menkes and Wilson disease genes counteract in copper toxicosis in Labrador retrievers: A new canine model for copper-metabolism disorders. Fieten H, Gill Y, Martin AJ, Concilli M, Dirksen K, Van Steenbeek FG, Spee B, Van Den Ingh TSGAM, Martens ECCP, Festa P, Chesi G, Van De Sluis B, Houwen RHJH, Watson AL, Aulchenko YS, Hodgkinson VL, Zhu S, Petris MJ, Polishchuk RS, Leegwater PAJ, Rothuizen J. DMM Disease Models and Mechanisms; 9(1):25-38.

Date published: January 1, 2016
Featured in this article: Michael Petris.

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Plastid genomes reveal support for deep phylogenetic relationships and extensive rate variation among palms and other commelinid monocots. Barrett CF, Baker WJ, Comer JR, Conran JG, Lahmeyer SC, Leebens-Mack JH, Li J, Lim GS, Mayfield-Jones DR, Perez L, Medina J, Pires JC, Santos C, Wm Stevenson D, Zomlefer WB, Davis JI. New Phytologist; 209(2):855-870.

Date published: January 1, 2016
Featured in this article: J. Chris Pires.

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Identification and functional characterization of soybean root hair microRNAs expressed in response to Bradyrhizobium japonicum infection. Yan Z, Hossain MS, Valdés-López O, Hoang NT, Zhai J, Wang J, Liabault M, Brechenmacher L, Findley S, Joshi T, Qiu L, Sherrier DJ, Ji T, Meyers BC, Xu D, Stacey G. Plant Biotechnology Journal; 14(1):332-341.

Date published: January 1, 2016
Featured in this article: Trupti Joshi, Dong Xu, Gary Stacey.

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The time is right to focus on model organism metabolomes. Edison AS, Hall RD, Junot C, Karp PD, Kurland IJ, Mistrik R, Reed LK, Saito K, Salek RM, Steinbeck C, Sumner LW, Viant MR. Metabolites; 6(1):8.

Date published: January 1, 2016
Featured in this article: Lloyd Sumner.

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2015

Loss of function of folylpolyglutamate synthetase 1 reduces lignin content and improves cell wall digestibility in Arabidopsis. Srivastava AC, Chen F, Ray T, Pattathil S, Peña MJ, Avci U, Li H, Huhman DV, Backe J, Urbanowicz B, Miller JS, Bedair M, Wyman CE, Sumner LW, York WS, Hahn MG, Dixon RA, Blancaflor EB, Tang Y. Biotechnology for Biofuels; 8(1):403.

Date published: December 21, 2015
Featured in this article: Lloyd Sumner.

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Whole-genome gene expression profiling revealed genes and pathways potentially involved in regulating interactions of soybean with cyst nematode (Heterodera glycines Ichinohe). Wan J, Vuong T, Jiao Y, Joshi T, Zhang H, Xu D, Nguyen HT. BMC Genomics; 16(1):148.

Date published: December 12, 2015
Featured in this article: Trupti Joshi, Dong Xu.

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Ephrin-A3 promotes and maintains slow muscle fiber identity during postnatal development and reinnervation. Stark DA, Coffey NJ, Pancoast HR, Arnold LL, Walker JPD, Vallée J, Robitaille R, Garcia ML, Cornelison DDW. Journal of Cell Biology; 211(5):1077-1091.

Date published: December 7, 2015
Featured in this article: D Cornelison.

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Neural activation patterns underlying basolateral amygdala influence on intra-accumbens opioid-driven consummatory versus appetitive high-fat feeding behaviors in the rat. Parker KE, McCabe MP, Johns HW, Lund DK, Odu F, Sharma R, Thakkar MM, Cornelison DDW, Will MJ. Behavioral Neuroscience; 129(6):812-821.

Date published: December 1, 2015
Featured in this article: D Cornelison.

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Meeting report: Fungal genomics meets social media: Highlights of the 28th fungal genetics conference at asilomar. Momany M, Di Pietro A, Alexander WG, Barker BM, Harb OS, Kamoun S, Martin F, Chris Pires J, Stajich JE, Thomma BPHJ, Unruh S. G3: Genes, Genomes, Genetics; 5(12):2523-2525.

Date published: December 1, 2015
Featured in this article: J. Chris Pires.

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Core clock, SUB1, and ABAR genes mediate flooding and drought responses via alternative splicing in soybean. Syed NH, Prince SJ, Mutava RN, Patil G, Li S, Chen W, Babu V, Joshi T, Khan S, Nguyen HT. Journal of Experimental Botany; 66(22):7129-7149.

Date published: December 1, 2015
Featured in this article: Trupti Joshi.

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Exploring soybean metabolic pathways based on probabilistic graphical model and knowledge-based methods. Hou J, Stacey G, Cheng J. Eurasip Journal on Bioinformatics and Systems Biology; 2015(1):5.

Date published: December 1, 2015
Featured in this article: Gary Stacey.

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A Bayesian model for detection of high-order interactions among genetic variants in genome-wide association studies. Wang J, Joshi T, Valliyodan B, Shi H, Liang Y, Nguyen HT, Zhang J, Xu D. BMC Genomics; 16(1):1011.

Date published: November 25, 2015
Featured in this article: Juexin Wang, Trupti Joshi, Dong Xu.

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Xyloglucan, galactomannan, glucuronoxylan, and rhamnogalacturonan I do not have identical structures in soybean root and root hair cell walls. Muszyński A, O'Neill MA, Ramasamy E, Pattathil S, Avci U, Peña MJ, Libault M, Hossain MS, Brechenmacher L, York WS, Barbosa RM, Hahn MG, Stacey G, Carlson RW. Planta; 242(5):1123-1138.

Date published: November 22, 2015
Featured in this article: Gary Stacey.

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Characterizing the murine leukemia virus envelope glycoprotein membrane-spanning domain for its roles in interface alignment and fusogenicity. Salamango DJ, Johnson MC. Journal of Virology; 89(24):12492-12500.

Date published: November 17, 2015
Featured in this article: Marc Johnson.

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Autonomous requirements of the Menkes disease protein in the nervous system. Hodgkinson VL, Zhu S, Wang Y, Ladomersky E, Nickelson K, Weisman GA, Lee J, Gitlin JD, Petris MJ. American Journal of Physiology - Cell Physiology; 309(10):660-668.

Date published: November 15, 2015
Featured in this article: Gary Weisman, Michael Petris.

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Stem cell-soluble signals enhance multilumen formation in SMG cell clusters. Maruyama CLM, Leigh NJ, Nelson JW, McCall AD, Mellas RE, Lei P, Andreadis ST, Baker OJ. Journal of Dental Research; 94(11):1610-1617.

Date published: November 1, 2015
Featured in this article: Olga Baker.

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Ultra-fast alterations in mRNA levels uncover multiple players in light stress acclimation in plants. Suzuki N, Devireddy AR, Inupakutika MA, Baxter A, Miller G, Song L, Shulaev E, Azad RK, Shulaev V, Mittler R. Plant Journal; 84(4):760-772.

Date published: November 1, 2015
Featured in this article: Ron Mittler.

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Evolution of Asparagus L. (Asparagaceae): Out-of-South-Africa and multiple origins of sexual dimorphism. Norup MF, Petersen G, Burrows S, Bouchenak-Khelladi Y, Leebens-Mack J, Pires JC, Linder HP, Seberg O. Molecular Phylogenetics and Evolution; 92:25-44.

Date published: November 1, 2015
Featured in this article: J. Chris Pires.

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Comparative analysis of the drought-responsive transcriptome in soybean lines contrasting for canopy wilting. Prince SJ, Joshi T, Mutava RN, Syed N, Joao Vitor MDS, Patil G, Song L, Wang J, Lin L, Chen W, Shannon JG, Valliyodan B, Xu D, Nguyen HT. Plant Science; 240:65-78.

Date published: November 1, 2015
Featured in this article: Trupti Joshi, Dong Xu.

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Quercetin attenuates inflammatory responses in BV-2 microglial cells: Role of MAPKs on the Nrf2 pathway and induction of heme oxygenase-1. Sun GY, Chen Z, Jasmer KJ, Chuang DY, Gu Z, Hannink M, Simonyi A. PLoS ONE; 10(10):e0141509.

Date published: October 27, 2015
Featured in this article: Kimberly Jasmer, Mark Hannink.

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Erratum: Carbonic anhydrases, EPF2 and a novel protease mediate CO2 control of stomatal development (Nature (2014) 513 (246-250) DOI: 10.1038/nature13452). Engineer CB, Ghassemian M, Anderson JC, Peck SC, Hu H, Schroeder JI. Nature; 526(7573):458.

Date published: October 15, 2015
Featured in this article: Scott Peck.

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Cancer-related NEET proteins transfer 2Fe-2S clusters to anamorsin, a protein required for cytosolic iron-sulfur cluster biogenesis. Lipper CH, Paddock ML, Onuchic JN, Mittler R, Nechushtai R, Jennings PA. PLoS ONE; 10(10):e0139699.

Date published: October 8, 2015
Featured in this article: Ron Mittler.

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Identification of Soybean Proteins and Genes Differentially Regulated in Near Isogenic Lines Differing in Resistance to Aphid Infestation. Brechenmacher L, Nguyen THN, Zhang N, Jun T-H, Xu D, Mian MAR, Stacey G. Journal of Proteome Research; 14(10):4137-4146.

Date published: October 2, 2015
Featured in this article: Dong Xu, Gary Stacey.

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NEDD4 Regulates PAX7 Levels Promoting Activation of the Differentiation Program in Skeletal Muscle Precursors. Bustos F, De La Vega E, Cabezas F, Thompson J, Cornelison DDW, Olwin BB, Yates JR, Olguín HC. Stem Cells; 33(10):3138-3151.

Date published: October 1, 2015
Featured in this article: D Cornelison.

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4′-modified nucleoside analogs: Potent inhibitors active against entecavir-resistant hepatitis B virus. Takamatsu Y, Tanaka Y, Kohgo S, Murakami S, Singh K, Das D, Venzon DJ, Amano M, Higashi-Kuwata N, Aoki M, Delino NS, Hayashi S, Takahashi S, Sukenaga Y, Haraguchi K, Sarafianos SG, Maeda K, Mitsuya H. Hepatology; 62(4):1024-1036.

Date published: October 1, 2015
Featured in this article: Kamlendra Singh.

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Retention projection enables accurate calculation of liquid chromatographic retention times across labs and methods. Abate-Pella D, Freund DM, Ma Y, Simón-Manso Y, Hollender J, Broeckling CD, Huhman DV, Krokhin OV, Stoll DR, Hegeman AD, Kind T, Fiehn O, Schymanski EL, Prenni JE, Sumner LW, Boswell PG. Journal of Chromatography A; 1412:43-51.

Date published: September 18, 2015
Featured in this article: Lloyd Sumner.

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The players may change but the game remains: Network analyses of ruminal microbiomes suggest taxonomic differences mask functional similarity. Taxis TM, Wolff S, Gregg SJ, Minton NO, Zhang C, Dai J, Schnabel RD, Taylor JF, Kerley MS, Pires JC, Lamberson WR, Conant GC. Nucleic Acids Research; 43(20):9600-9612.

Date published: September 15, 2015
Featured in this article: J. Chris Pires.

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MET-XAlign: A Metabolite Cross-Alignment Tool for LC/MS-Based Comparative Metabolomics. Zhang W, Lei Z, Huhman D, Sumner LW, Zhao PX. Analytical Chemistry; 87(18):9114-9119.

Date published: September 15, 2015
Featured in this article: Zhentian Lei, Lloyd Sumner.

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Positionally-conserved but sequence-diverged: Identification of long non-coding RNAs in the Brassicaceae and Cleomaceae. Mohammadin S, Edger PP, Pires JC, Schranz ME. BMC Plant Biology; 15(1):217.

Date published: September 11, 2015
Featured in this article: J. Chris Pires.

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Cell wall protection by the Candida albicans class I chitin synthases. Preechasuth K, Anderson JC, Peck SC, Brown AJP, Gow NAR, Lenardon MD. Fungal Genetics and Biology; 82:264-276.

Date published: September 1, 2015
Featured in this article: Scott Peck.

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Molecular basis of neurodegeneration and neurodevelopmental defects in Menkes disease. Zlatic S, Comstra HS, Gokhale A, Petris MJ, Faundez V. Neurobiology of Disease; 81:154-161.

Date published: September 1, 2015
Featured in this article: Michael Petris.

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Effect of lipo-chitooligosaccharide on early growth of C4 grass seedlings. Tanaka K, Cho S-H, Lee H, Pham AQ, Batek JM, Cui S, Qiu J, Khan SM, Joshi T, Zhang ZT, Xu D, Stacey G. Journal of Experimental Botany; 66(19):5727-5738.

Date published: September 1, 2015
Featured in this article: Trupti Joshi, Dong Xu, Gary Stacey.

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Metabolite profiles of essential oils in citrus peels and their taxonomic implications. Jing L, Lei Z, Zhang G, Pilon AC, Huhman DV, Xie R, Xi W, Zhou Z, Sumner LW. Metabolomics; 11(4):952-963.

Date published: August 22, 2015
Featured in this article: Zhentian Lei, Lloyd Sumner.

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Phylogeny and photosynthesis of the grass tribe Paniceae. Washburn JD, Schnable JC, Davidse G, Pires JC. American Journal of Botany; 102(9):1493-1505.

Date published: August 15, 2015
Featured in this article: J. Chris Pires.

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Soybean transcription factor ORFeome associated with drought resistance: A valuable resource to accelerate research on abiotic stress resistance. Chai C, Wang Y, Joshi T, Valliyodan B, Prince S, Michel L, Xu D, Nguyen HT. BMC Genomics; 16(1):596.

Date published: August 13, 2015
Featured in this article: Trupti Joshi, Dong Xu.

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Identification of microRNAs and their mRNA targets during soybean nodule development: Functional analysis of the role of miR393j-3p in soybean nodulation. Yan Z, Hossain MS, Arikit S, Valdés-López O, Zhai J, Wang J, Libault M, Ji T, Qiu L, Meyers BC, Stacey G. New Phytologist; 207(3):748-759.

Date published: August 1, 2015
Featured in this article: Gary Stacey.

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A laser ablation ICP-MS based method for multiplexed immunoblot analysis: Applications to manganese-dependent protein dynamics of photosystem II in barley (Hordeum vulgare L.). De Bang TC, Peterson J, Pedas PR, Rogowska-Wrzesinska A, Jensen ON, Schjoerring JK, Jensen PE, Thelen JJ, Husted S. Plant Journal; 83(3):555-565.

Date published: August 1, 2015
Featured in this article: Jay Thelen.

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Construction of an Ultrahigh Pressure Liquid Chromatography-Tandem Mass Spectral Library of Plant Natural Products and Comparative Spectral Analyses. Lei Z, Jing L, Qiu F, Zhang H, Huhman D, Zhou Z, Sumner LW. Analytical Chemistry; 87(14):7373-7381.

Date published: July 21, 2015
Featured in this article: Zhentian Lei, Lloyd Sumner.

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Astrocytes influence the severity of spinal muscular atrophy. Rindt H, Feng Z, Mazzasette C, Glascock JJ, Valdivia D, Pyles N, Crawford TO, Swoboda KJ, Patitucci TN, Ebert AD, Sumner CJ, Ko C-P, Lorson CL. Human Molecular Genetics; 24(14):4094-4102.

Date published: July 15, 2015
Featured in this article: Christian Lorson.

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Resolving deep relationships of PACMAD grasses: a phylogenomic approach. Cotton JL, Wysocki WP, Clark LG, Kelchner SA, Pires JC, Edger PP, Mayfield-Jones D, Duvall MR. BMC Plant Biology; 15:178.

Date published: July 11, 2015
Featured in this article: J. Chris Pires.

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Soybean (Glycine max) SWEET gene family: Insights through comparative genomics, transcriptome profiling and whole genome re-sequence analysis. Patil G, Valliyodan B, Deshmukh R, Prince S, Nicander B, Zhao M, Sonah H, Song L, Lin L, Chaudhary J, Liu Y, Joshi T, Xu D, Nguyen HT. BMC Genomics; 16(1):520.

Date published: July 11, 2015
Featured in this article: Trupti Joshi, Dong Xu.

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The butterfly plant arms-race escalated by gene and genome duplications. Edger PP, Heidel-Fischer HM, Bekaert M, Rota J, Glöckner G, Platts AE, Heckel DG, Der JP, Wafula EK, Tang M, Hofberger JA, Smithson A, Hall JC, Blanchette M, Bureau TE, Wright SI, DePamphilis CW, Schranz ME, Barker MS, Conant GC, Wahlberg N, Vogel H, Pires JC, Wheat CW, Berenbaum MR. Proceedings of the National Academy of Sciences of the United States of America; 112(27):8362-8366.

Date published: July 7, 2015
Featured in this article: J. Chris Pires.

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Biodiversity Comparison among Phylogenetic Diversity Metrics and between Three North American Prairies. Roxanne Kellar P, Ahrendsen DL, Aust SK, Jones AR, Pires JC. Applications in Plant Sciences; 3(7):8.

Date published: July 1, 2015
Featured in this article: J. Chris Pires.

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Phylogenetics, divergence times and diversification from three genomic partitions in monocots. Hertweck KL, Kinney MS, Stuart SA, Maurin O, Mathews S, Chase MW, Gandolfo MA, Pires JC. Bontanical Journal of the Linnean Society; 178(3):375-393.

Date published: July 1, 2015
Featured in this article: J. Chris Pires.

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Identification of quantitative trait loci underlying resistance to southern root-knot and reniform nematodes in soybean accession PI 567516C. Jiao Y, Vuong TD, Liu Y, Li Z, Noe J, Robbins RT, Joshi T, Xu D, Shannon JG, Nguyen HT. Molecular Breeding; 35(6):131.

Date published: June 26, 2015
Featured in this article: Trupti Joshi, Dong Xu.

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Genome-wide expression analysis of soybean NF-Y genes reveals potential function in development and drought response. Quach TN, Nguyen HTM, Valliyodan B, Joshi T, Xu D, Nguyen HT. Molecular Genetics and Genomics; 290(3):1095-1115.

Date published: June 23, 2015
Featured in this article: Trupti Joshi, Dong Xu.

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Does plant immunity play a critical role during initiation of the legume-rhizobium symbiosis?. Tóth K, Stacey G. Frontiers in Plant Science; 6(June):401.

Date published: June 2, 2015
Featured in this article: Gary Stacey.

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Structure-function analysis of NEET proteins uncovers their role as key regulators of iron and ROS homeostasis in health and disease. Tamir S, Paddock ML, Darash-Yahana-Baram M, Holt SH, Sohn YS, Agranat L, Michaeli D, Stofleth JT, Lipper CH, Morcos F, Cabantchik IZ, Onuchic JN, Jennings PA, Mittler R, Nechushtai R. Biochimica et Biophysica Acta - Molecular Cell Research; 1853(6):1294-1315.

Date published: June 1, 2015
Featured in this article: Ron Mittler.

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X-linked spinal muscular atrophy in mice caused by autonomous loss of ATP7A in the motor neuron. Hodgkinson VL, Dale JM, Garcia ML, Weisman GA, Lee J, Gitlin JD, Petris MJ. Journal of Pathology; 236(2):241-250.

Date published: June 1, 2015
Featured in this article: Gary Weisman, Michael Petris.

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Copper tolerance and virulence in bacteria. Ladomersky E, Petris MJ. Metallomics; 7(6):957-964.

Date published: June 1, 2015
Featured in this article: Michael Petris.

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Elucidating steroid alkaloid biosynthesis in Veratrum californicum: Production of verazine in Sf9 cells. Augustin MM, Ruzicka DR, Shukla AK, Augustin JM, Starks CM, O'Neil-Johnson M, McKain MR, Evans BS, Barrett MD, Smithson A, Wong GK-S, Deyholos MK, Edger PP, Pires JC, Leebens-Mack JH, Mann DA, Kutchan TM. Plant Journal; 82(6):991-1003.

Date published: June 1, 2015
Featured in this article: J. Chris Pires.

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System approaches to study root hairs as a single cell plant model: Current status and future perspectives. Hossain MS, Joshi T, Stacey G. Frontiers in Plant Science; 6(MAY):1-7.

Date published: May 19, 2015
Featured in this article: Trupti Joshi, Gary Stacey.

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Genome-wide analysis of mutations in a dwarf soybean mutant induced by fast neutron bombardment. Hwang WJ, Kim MY, Kang YJ, Shim S, Stacey MG, Stacey G, Lee S-H. Euphytica; 203(2):399-408.

Date published: May 18, 2015
Featured in this article: Minviluz (Bing) Stacey, Gary Stacey.

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Characterization of Angiogenesis and Lymphangiogenesis in Human Minor Salivary Glands with Sjögren’s Syndrome. McCall AD, Baker OJ. Journal of Histochemistry and Cytochemistry; 63(5):340-349.

Date published: May 5, 2015
Featured in this article: Olga Baker.

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Plastid phylogenomics of the cool-season grass subfamily: Clarification of relationships among early-diverging tribes. Saarela JM, Wysocki WP, Barrett CF, Soreng RJ, Davis JI, Clark LG, Kelchner SA, Pires JC, Edger PP, Mayfield DR, Duvall MR. AoB PLANTS; 7(1).

Date published: May 2, 2015
Featured in this article: J. Chris Pires.

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Increased Expression of TGF-β Signaling Components in a Mouse Model of Fibrosis Induced by Submandibular Gland Duct Ligation. Woods LT, Camden JM, El-Sayed FG, Khalafalla MG, Petris MJ, Erb L, Weisman GA. PLoS ONE; 10(5):e0123641.

Date published: May 1, 2015
Featured in this article: Lucas Woods, Jean Camden, Michael Petris, Gary Weisman.

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From gigabyte to kilobyte: A bioinformatics protocol for mining large RNA-Seq transcriptomics data. Li J, Hou J, Sun L, Wilkins JM, Lu Y, Niederhuth CE, Merideth BR, Mawhinney TP, Mossine VV, Greenlief CM, Walker JC, Folk WR, Hannink M, Lubahn DB, Birchler JA, Cheng J. PLoS ONE; 10(4):e0125000.

Date published: April 22, 2015
Featured in this article: Michael Greenlief, Mark Hannink.

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The SMN structure reveals its crucial role in snRNP assembly (RETRACTED). Seng CO, Magee C, Young PJ, Lorson CL, Allen JP. Human Molecular Genetics; 24(8):2138-2146.

Date published: April 15, 2015
Featured in this article: Christian Lorson.

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Comparative proteomic analysis of developing rhizomes of the ancient vascular plant equisetum hyemale and different monocot species. Salvato F, Balbuena TS, Nelson W, Rao RSP, He R, Soderlund CA, Gand DR, Thelen JJ. Journal of Proteome Research; 14(4):1779-1791.

Date published: April 3, 2015
Featured in this article: Jay Thelen.

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An association analysis between psychophysical characteristics and genome-wide gene expression changes in human adaptation to the extreme climate at the Antarctic Dome Argus. Xu C, Ju X, Song D, Huang F, Tang D, Zou Z, Zhang C, Joshi T, Jia L, Xu W, Xu K-F, Wang Q, Xiong Y, Guo Z, Chen X, Huang F, Xu J, Zhong Y, Zhu Y, Peng Y, Wang L, Zhang X, Jiang R, Li D, Jiang T, Xu D, Jiang C. Molecular Psychiatry; 20(4):536-544.

Date published: April 2, 2015
Featured in this article: Trupti Joshi, Dong Xu.

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Integrated metabolomics and transcriptomics reveal enhanced specialized metabolism in Medicago truncatula root border cells. Watson BS, Bedair MF, Urbanczyk-Wochniak E, Huhman DV, Yang DS, Allen SN, Li W, Tang Y, Sumner LW. Plant Physiology; 167(4):1699-1716.

Date published: April 1, 2015
Featured in this article: Lloyd Sumner.

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Patterns of metabolite changes identified from large-scale gene perturbations in arabidopsis using a genome-scale metabolic network. Kim T, Dreher K, Nilo-Poyanco R, Lee I, Fiehn O, Lange BM, Nikolau BJ, Sumner L, Welti R, Wurtele ES, Rhee SY. Plant Physiology; 167(4):1685-1698.

Date published: April 1, 2015
Featured in this article: Lloyd Sumner.

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The Fe-S cluster-containing NEET proteins mitoNEET and NAF-1 as chemotherapeutic targets in breast cancer. Bai F, Morcos F, Sohn Y-S, Darash-Yahana M, Rezende CO, Lipper CH, Paddock ML, Song L, Luo Y, Holt SH, Tamir S, Theodorakis EA, Jennings PA, Onuchic JN, Mittler R, Nechushtai R. Proceedings of the National Academy of Sciences of the United States of America; 112(12):3698-3703.

Date published: March 24, 2015
Featured in this article: Ron Mittler.

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Omeprazole, a gastric proton pump inhibitor, inhibits melanogenesis by blocking ATP7A trafficking. Matsui MS, Petris MJ, Niki Y, Karaman-Jurukovska N, Muizzuddin N, Ichihashi M, Yarosh DB. Journal of Investigative Dermatology; 135(3):834-841.

Date published: March 12, 2015
Featured in this article: Michael Petris.

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FASTAptamer: A bioinformatic toolkit for high-throughput sequence analysis of combinatorial selections. Alam KK, Chang JL, Burke DH. Molecular Therapy - Nucleic Acids; 4(3):e230.

Date published: March 1, 2015
Featured in this article: Donald Burke-Agüero.

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Rhizobium-legume symbioses: The crucial role of plant immunity. Gourion B, Berrabah F, Ratet P, Stacey G. Trends in Plant Science; 20(3):186-194.

Date published: March 1, 2015
Featured in this article: Gary Stacey.

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Robust biological nitrogen fixation in a model grass-bacterial association. Pankievicz VCS, Do Amaral FP, Santos KFDN, Agtuca B, Xu Y, Schueller MJ, Arisi ACM, Steffens MBR, De Souza EM, Pedrosa FO, Stacey G, Ferrieri RA. Plant Journal; 81(6):907-919.

Date published: March 1, 2015
Featured in this article: Gary Stacey.

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Genetic variants in root architecture-related genes in a Glycine soja accession, a potential resource to improve cultivated soybean. Prince SJ, Song L, Qiu D, Maldonado dos Santos JV, Chai C, Joshi T, Patil G, Valliyodan B, Vuong TD, Murphy M, Krampis K, Tucker DM, Biyashev R, Dorrance AE, Maroof MAS, Xu D, Shannon JG, Nguyen HT. BMC Genomics; 16(1):132.

Date published: February 25, 2015
Featured in this article: Trupti Joshi, Dong Xu.

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NFIB regulates embryonic development of submandibular glands. Mellas RE, Kim H, Osinski J, Sadibasic S, Gronostajski RM, Cho M, Baker OJ. Journal of Dental Research; 94(2):312-319.

Date published: February 22, 2015
Featured in this article: Olga Baker.

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The Mitochondrial Metallochaperone SCO1 Is Required to Sustain Expression of the High-Affinity Copper Transporter CTR1 and Preserve Copper Homeostasis. Hlynialuk CJ, Ling B, Baker ZN, Cobine PA, Yu LD, Boulet A, Wai T, Hossain A, ElZawily AM, McFie PJ, Stone SJ, Diaz F, Moraes CT, Viswanathan D, Petris MJ, Leary SC. Cell Reports; 10(6):933-943.

Date published: February 17, 2015
Featured in this article: Michael Petris.

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Modern plant metabolomics: Advanced natural product gene discoveries, improved technologies, and future prospects. Sumner LW, Lei Z, Nikolau BJ, Saito K. Natural Product Reports; 32(2):212-229.

Date published: February 1, 2015
Featured in this article: Lloyd Sumner, Zhentian Lei.

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Zonula Occludens-1, Occludin and E-cadherin Expression and Organization in Salivary Glands with Sjögren’s Syndrome. Mellas RE, Leigh NJ, Nelson JW, McCall AD, Baker OJ. Journal of Histochemistry and Cytochemistry; 63(1):45-56.

Date published: January 30, 2015
Featured in this article: Olga Baker.

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Development of an isoform-specific tandem mass spectrometry assay for absolute quantitation of maize lipid transfer proteins. Stevenson SE, McClain S, Thelen JJ. Journal of Agricultural and Food Chemistry; 63(3):821-828.

Date published: January 28, 2015
Featured in this article: Jay Thelen.

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The roles of ROS and ABA in systemic acquired acclimation. Mittler R, Blumwald E. Plant Cell; 27(1):64-70.

Date published: January 20, 2015
Featured in this article: Ron Mittler.

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Identification and evaluation of quantitative trait loci underlying resistance to multiple HG types of soybean cyst nematode in soybean PI 437655. Jiao Y, Vuong TD, Liu Y, Meinhardt C, Liu Y, Joshi T, Cregan PB, Xu D, Shannon JG, Nguyen HT. Theoretical and Applied Genetics; 128(1):15-23.

Date published: January 17, 2015
Featured in this article: Trupti Joshi, Dong Xu.

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Gene therapy in spinal muscular atrophy (SMA) models using intracerebroventricular injection into neonatal mice. Shababi M, Osman EY, Lorson CL. Neuromethods; 98:297-320.

Date published: January 13, 2015
Featured in this article: Christian Lorson.

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CODAS syndrome is associated with mutations of LONP1, encoding mitochondrial AAA+ lon protease. Strauss KA, Jinks RN, Puffenberger EG, Venkatesh S, Singh K, Cheng I, Mikita N, Thilagavathi J, Lee J, Sarafianos S, Benkert A, Koehler A. American Journal of Human Genetics; 96(1):121-135.

Date published: January 8, 2015
Featured in this article: Kamlendra Singh.

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Preface. Chen S-J, Burke-Agüero DH. Methods in Enzymology; 553:xv-xvii.

Date published: January 1, 2015
Featured in this article: Donald Burke-Agüero.

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Preface. Burke-Aguero DH. Methods in Enzymology; 550:xv-xix.

Date published: January 1, 2015
Featured in this article: Donald Burke-Agüero.

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Unreduced gametes: Meiotic mishap or evolutionary mechanism?. Mason AS, Pires JC. Trends in Genetics; 31(1):5-10.

Date published: January 1, 2015
Featured in this article: J. Chris Pires.

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Multifunctionality of a picornavirus polymerase domain: Nuclear localization signal and nucleotide recognition. Ferrer-Octa C, De La Higuera I, Caridi F, Sánchez-Aparicio MT, Moreno E, Perales C, Singh K, Sarafianos SG, Sobrino F, Domingo E, Verdaguer N. Journal of Virology; 89(13):6848-6859.

Date published: January 1, 2015
Featured in this article: Kamlendra Singh.

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Structural basis of clade-specific HIV-1 neutralization by humanized anti-V3 monoclonal antibody KD-247. Kirby KA, Ong YT, Hachiya A, Laughlin TG, Chiang LA, Pan Y, Moran JL, Marchand B, Singh K, Gallazzi F, Quinn TP, Yoshimura K, Murakami T, Matsushita S, Sarafianos SG. FASEB Journal; 29(1):70-80.

Date published: January 1, 2015
Featured in this article: Kamlendra Singh.

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Phytic acid and inorganic phosphate composition in soybean lines with independent IPK1 mutations. Vincent JA, Stacey M, Stacey G, Bilyeu KD. Plant Genome; 8(1).

Date published: January 1, 2015
Featured in this article: Minviluz (Bing) Stacey, Gary Stacey.

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DNA microarray-based identification of genes regulated by NtrC in Bradyrhizobium japonicum. Franck WL, Qiu J, Lee H-I, Chang W-S, Stacey G. Applied and Environmental Microbiology; 81(16):5299-5308.

Date published: January 1, 2015
Featured in this article: Gary Stacey.

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Role of Ectoapyrases in Nodulation. Tanaka K, Tóth K, Stacey G. Biological Nitrogen Fixation; 2-2:517-524.

Date published: January 1, 2015
Featured in this article: Gary Stacey.

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Convergent signaling pathways—interaction between methionine oxidation and serine/threonine/tyrosine O-phosphorylation. Rao RSP, Møller IM, Thelen JJ, Miernyk JA. Cell Stress and Chaperones; 20(1):15-21.

Date published: January 1, 2015
Featured in this article: Jay Thelen.

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2014

A modified data normalization method for GC-MS-based metabolomics to minimize batch variation. Chen M, Rao RSP, Zhang Y, Zhong CX, Thelen JJ. SpringerPlus; 3(1):439.

Date published: December 30, 2014
Featured in this article: Jay Thelen.

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Investigating the path of plastid genome degradation in an early-transitional clade of heterotrophic orchids, and implications for heterotrophic angiosperms. Barrett CF, Freudenstein JV, Li J, Mayfield-Jones DR, Perez L, Pires JC, Santos C. Molecular Biology and Evolution; 31(12):3095-3112.

Date published: December 1, 2014
Featured in this article: J. Chris Pires.

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Origin of a novel regulatory module by duplication and degeneration of an ancient plant transcription factor. Floyd SK, Ryan JG, Conway SJ, Brenner E, Burris KP, Burris JN, Chen T, Edger PP, Graham SW, Leebens-Mack JH, Pires JC, Rothfels CJ, Sigel EM, Stevenson DW, Neal Stewart C, Wong GKS, Bowman JL. Molecular Phylogenetics and Evolution; 81:159-173.

Date published: December 1, 2014
Featured in this article: J. Chris Pires.

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Proteomic analysis of the effects of aged garlic extract and its FruArg component on lipopolysaccharide-induced neuroinflammatory response in microglial cells. Zhou H, Qu Z, Mossine VV, Nknolise DL, Li J, Chen Z, Cheng J, Greenlief CM, Mawhinney TP, Brown PN, Fritsche KL, Hannink M, Lubahn DB, Sun GY, Gu Z. PLoS ONE; 9(11):e113531.

Date published: November 24, 2014
Featured in this article: Michael Greenlief, Mark Hannink.

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Nonadditive gene expression in polyploids. Yoo M-J, Liu X, Pires JC, Soltis PS, Soltis DE. Annual Review of Genetics; 48:485-517.

Date published: November 23, 2014
Featured in this article: J. Chris Pires.

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Transcriptional responses of Arabidopsis thaliana to chewing and sucking insect herbivores. Appel HM, Fescemyer H, Ehlting J, Weston D, Rehrig E, Joshi T, Xu D, Bohlmann J, Schultz J. Frontiers in Plant Science; 5(November):1-20.

Date published: November 14, 2014
Featured in this article: Trupti Joshi, Dong Xu.

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Comparative analysis of 11 Brassicales mitochondrial genomes and the mitochondrial transcriptome of Brassica oleracea. Grewe F, Edger PP, Keren I, Sultan L, Pires JC, Ostersetzer-Biran O, Mower JP. Mitochondrion; 19(PB):135-143.

Date published: November 1, 2014
Featured in this article: J. Chris Pires.

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Extracellular ATP, a danger signal, is recognized by DORN1 in Arabidopsis. Choi J, Tanaka K, Liang Y, Cao Y, Lee SY, Stacey G. Biochemical Journal; 463(3):429-437.

Date published: November 1, 2014
Featured in this article: Gary Stacey.

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Global reprogramming of transcription and metabolism in Medicago truncatula during progressive drought and after rewatering. Zhang J-Y, Cruz De Carvalho MH, Torres-Jerez I, Kang Y, Allen SN, Huhman DV, Tang Y, Murray J, Sumner LW, Udvardi MK. Plant, Cell and Environment; 37(11):2553-2576.

Date published: November 1, 2014
Featured in this article: Lloyd Sumner.

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Proposed quantitative and alphanumeric metabolite identification metrics. Sumner LW, Lei Z, Nikolau BJ, Saito K, Roessner U, Trengove R. Metabolomics; 10(6):1047-1049.

Date published: October 30, 2014
Featured in this article: Lloyd Sumner, Zhentian Lei.

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Functions of EDS1-like and PAD4 genes in grapevine defenses against powdery mildew. Gao F, Dai R, Pike SM, Qiu W, Gassmann W. Plant Molecular Biology; 86(4-5):381-393.

Date published: October 10, 2014
Featured in this article: Sharon Pike, Walter Gassmann.

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Carbonic anhydrases, EPF2 and a novel protease mediate CO2 control of stomatal development. Engineer CB, Ghassemian M, Anderson JC, Peck SC, Hu H, Schroeder JI. Nature; 513(7517):246-250.

Date published: October 2, 2014
Featured in this article: Scott Peck.

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A tidal wave of signals: Calcium and ROS at the forefront of rapid systemic signaling. Gilroy S, Suzuki N, Miller G, Choi W-G, Toyota M, Devireddy AR, Mittler R. Trends in Plant Science; 19(10):623-630.

Date published: October 1, 2014
Featured in this article: Ron Mittler.

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Interview with Ron Mittler. Mittler R. Trends in Plant Science; 19(10):611-612.

Date published: October 1, 2014
Featured in this article: Ron Mittler.

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Interfacing Whispering Gallery Mode optical microresonator biosensors with the plant defense elicitor chitin. Dahmen JL, Yang Y, Greenlief CM, Stacey G, Hunt HK. Colloids and Surfaces B: Biointerfaces; 122:241-249.

Date published: October 1, 2014
Featured in this article: Michael Greenlief, Gary Stacey.

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Drug resistance in non-B subtype HIV-1: Impact of HIV-1 reverse transcriptase inhibitors. Singh K, Flores JA, Kirby KA, Neogi U, Sonnerborg A, Hachiya A, Das K, Arnold E, McArthur C, Parniak M, Sarafianos SG. Viruses; 6(9):3535-3562.

Date published: September 24, 2014
Featured in this article: Kamlendra Singh.

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Erratum: Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome (Science (2014) 345:6199 (950-953)). Chalhoub B, Denoeud F, Liu S, Parkin IAP, Tang H, Wang X, Chiquet J, Belcram H, Tong C, Samans B, Corréa M, Da Silva C, Just J, Falentin C, Koh CS, Le Clainche I, Bernard M, Bento P, Noel B, Labadie K, Alberti A, Charles M, Arnaud D, Guo H, Daviaud C, Alamery S, Jabbari K, Zhao M, Edger PP, Chelaifa H, Tack D, Lassalle G, Mestiri I, Schnel N, Le Paslier M-C, Fan G, Renault V, Bayer PE, Golicz AA, Manoli S, Lee T-H, Thi VHD, Chalabi S, Hu Q, Fan C, Tollenaere R, Lu Y, Battail C, Shen J, Sidebottom CHD, Wang X, Canaguier A, Chauveau A, Bérard A, Deniot G, Guan M, Liu Z, Sun F, Lim YP, Lyons E, Town CD, Bancroft I, Wang X, Meng J, Ma, J, Pires JC, King GJ, Brunel D, Delourme R, Renard M, Aury J-M, Adams KL, Batley J, Snowdon RJ, Tost J, Edwards D, Zhou Y, Hua W, Sharpe AG, Paterson AH, Guan C, Wincker P. Science; 345(6202).

Date published: September 12, 2014
Featured in this article: J. Chris Pires.

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A conserved motif mediates both multimer formation and allosteric activation of phosphoglycerate mutase 5. Wilkins JM, McConnell C, Tipton PA, Hannink M. Journal of Biological Chemistry; 289(36):25137-25148.

Date published: September 5, 2014
Featured in this article: Mark Hannink.

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Extracellular ATP acts as a damage-associated molecular pattern (DAMP) signal in plants. Tanaka K, Choi J, Cao Y, Stacey G. Frontiers in Plant Science; 5(SEP):446.

Date published: September 3, 2014
Featured in this article: Gary Stacey.

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TIM-family proteins inhibit HIV-1 release. Li M, Ablan SD, Miao C, Zheng Y-M, Fuller MS, Rennert PD, Maury W, Johnson MC, Freed EO, Liu S-L. Proceedings of the National Academy of Sciences of the United States of America; 111(35):E3699-E3707.

Date published: September 2, 2014
Featured in this article: Marc Johnson.

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Morpholino antisense oligonucleotides targeting intronic repressor Element1 improve phenotype in SMA mouse models. Osman EY, Miller MR, Robbins KL, Lombardi AM, Atkinson AK, Brehm AJ, Lorson CL. Human Molecular Genetics; 23(18):4832-4845.

Date published: September 1, 2014
Featured in this article: Christian Lorson.

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Defining the therapeutic window in a severe animal model of spinal muscular atrophy. Robbins KL, Glascock JJ, Osman EY, Miller MR, Lorson CL. Human Molecular Genetics; 23(17):4559-4568.

Date published: September 1, 2014
Featured in this article: Christian Lorson.

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OPT3 is a component of the iron-signaling network between leaves and roots and misregulation of OPT3 leads to an over-accumulation of cadmium in seeds. Mendoza-Cózatl DG, Xie Q, Akmakjian GZ, Jobe TO, Patel A, Stacey MG, Song L, Demoin DW, Jurisson SS, Stacey G, Schroeder JI. Molecular Plant; 7(9):1455-1469.

Date published: September 1, 2014
Featured in this article: David Mendoza-Cózatl, Minviluz (Bing) Stacey, Gary Stacey.

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Is Lys-Ne⁽ᵉᵒᵖᵉⁿ⁾-acetylation the next big thing in post-translational modifications?. Rao RSP, Thelen JJ, Miernyk JA. Trends in Plant Science; 19(9):550-553.

Date published: September 1, 2014
Featured in this article: Jay Thelen.

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A multi-step comparison of short-read full plastome sequence assembly methods in grasses. Wysocki WP, Clark LG, Kelchner SA, Burke SV, Pires JC, Edger PP, Mayfield DR, Triplett JK, Columbus JT, Ingram AL, Duvall MR. Taxon; 63(4):899-910.

Date published: August 28, 2014
Featured in this article: J. Chris Pires.

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Separation of zinc-dependent and zinc-independent events during early LPS-stimulated TLR4 signaling in macrophage cells. Wan Y, Petris MJ, Peck SC. FEBS Letters; 588(17):2928-2935.

Date published: August 25, 2014
Featured in this article: Michael Petris, Scott Peck.

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Early allopolyploid evolution in the post-neolithic Brassica napus oilseed genome. Chalhoub B, Denoeud F, Liu S, Parkin IAP, Tang H, Wang X, Chiquet J, Belcram H, Tong C, Samans B, Corréa M, Da Silva C, Just J, Falentin C, Koh CS, Le Clainche I, Bernard M, Bento P, Noel B, Labadie K, Alberti A, Charles M, Arnaud D, Guo H, Daviaud C, Alamery S, Jabbari K, Zhao M, Edger PP, Chelaifa H, Tack D, Lassalle G, Mestiri I, Schnel N, Le Paslier M-C, Fan G, Renault V, Bayer PE, Golicz AA, Manoli S, Lee T-H, Thi VHD, Chalabi S, Hu Q, Fan C, Tollenaere R, Lu Y, Battail C, Shen J, Sidebottom CHD, Wang X, Canaguier A, Chauveau A, Bérard A, Deniot G, Guan M, Liu Z, Sun F, Lim YP, Lyons E, Town CD, Bancroft I, Wang X, Meng J, Ma, J, Pires JC, King GJ, Brunel D, Delourme R, Renard M, Aury J-M, Adams KL, Batley J, Snowdon RJ, Tost J, Edwards D, Zhou Y, Hua W, Sharpe AG, Paterson AH, Guan C, Wincker P. Science; 345(6199):950-953.

Date published: August 22, 2014
Featured in this article: J. Chris Pires.

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In silico analysis of protein Lys-Nᵋ -acetylation in plants. Shyama Prasad Rao R, Thelen JJ, Miernyk JA. Frontiers in Plant Science; 5(AUG):381.

Date published: August 4, 2014
Featured in this article: Jay Thelen.

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Evaluation of SSYA10-001 as a replication inhibitor of severe acute respiratory syndrome, mouse hepatitis, and Middle East respiratory syndrome coronaviruses. Adedeji AO, Singh K, Kassim A, Coleman CM, Elliott R, Weiss SR, Frieman MB, Sarafianos SG. Antimicrobial Agents and Chemotherapy; 58(8):4894-4898.

Date published: August 1, 2014
Featured in this article: Kamlendra Singh.

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Extracellular ATP is a central signaling molecule in plant stress responses. Cao Y, Tanaka A, Nguyen CT, Stacey G. Current Opinion in Plant Biology; 20:82-87.

Date published: August 1, 2014
Featured in this article: Gary Stacey.

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Dissection of defense pathways in the grapevine-powdery mildew interaction by employing arabidopsis defense-related mutants. Qiu W, Gassmann W, Gao F, Singh K, Zhang Y. Acta Horticulturae; 1046:85-90.

Date published: July 20, 2014
Featured in this article: Walter Gassmann.

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LIK1, a CERK1-interacting kinase, regulates plant immune responses in arabidopsis. Le MH, Cao Y, Zhang X-C, Stacey G. PLoS ONE; 9(7):e102245.

Date published: July 18, 2014
Featured in this article: Gary Stacey.

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MMP-14 is necessary but not sufficient for invasion of three-dimensional collagen by human muscle satellite cells. Lund DK, Mouly V, Cornelison DDW. American Journal of Physiology - Cell Physiology; 307(2):C140-C149.

Date published: July 15, 2014
Featured in this article: D Cornelison.

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Induction of heme oxygenase I (HMOX1) by HPP-4382: A novel modulator of bach1 activity. Attucks OC, Jasmer KJ, Hannink M, Kassis J, Zhong Z, Gupta S, Victory SF, Guzel M, Polisetti DR, Andrews R, Mjalli AMM, Kostura MJ. PLoS ONE; 9(7):e101044.

Date published: July 14, 2014
Featured in this article: Mark Hannink.

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Transport of boron by the tassel-less1 aquaporin is critical for vegetative and reproductive development in maize. Durbak AR, Phillips KA, Pike S, O'Neill MA, Mares J, Gallavotti A, Malcomber ST, Gassmann W, McSteen P. Planet Cell; 26(7):2978-2995.

Date published: July 1, 2014
Featured in this article: Sharon Pike, Walter Gassmann, Paula McSteen.

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Abiotic and biotic stress combinations. Suzuki N, Rivero RM, Shulaev V, Blumwald E, Mittler R. New Phytologist; 203(1):32-43.

Date published: July 1, 2014
Featured in this article: Ron Mittler.

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P2Y2 nucleotide receptor activation enhances the aggregation and self-organization of dispersed salivary epithelial cells. El-Sayed FG, Camden JM, Woods LT, Khalafalla MG, Petris MJ, Erb L, Weisman GA. American Journal of Physiology - Cell Physiology; 307(1):C83-C96.

Date published: July 1, 2014
Featured in this article: Jean Camden, Lucas Woods, Michael Petris, Gary Weisman.

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Comparative Phylogenomics Uncovers the Impact of Symbiotic Associations on Host Genome Evolution. Delaux P-M, Varala K, Edger PP, Coruzzi GM, Pires JC, Ané J-M. PLoS Genetics; 10(7):e1004487.

Date published: July 1, 2014
Featured in this article: J. Chris Pires.

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Secondary structure analyses of the nuclear rRNA internal transcribed spacers and assessment of its phylogenetic utility across the brassicaceae (mustards). Edger PP, Tang M, Bird KA, Mayfield DR, Conant G, Mummenhoff K, Koch MA, Pires JC. PLoS ONE; 9(7):e101341.

Date published: July 1, 2014
Featured in this article: J. Chris Pires.

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Genotypic variation of gene expression during the soybean innate immunity response. Valdés-López O, Khan SM, Schmitz RJ, Cui S, Qiu J, Joshi T, Xu D, Diers B, Ecker JR, Stacey G. Plant Genetic Resources: Characterisation and Utilisation; 12(SUPPL.1):S27-S30.

Date published: July 1, 2014
Featured in this article: Trupti Joshi, Dong Xu, Gary Stacey.

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Comparative transcriptomic analysis of symbiotic Bradyrhizobium japonicum. Franck S, Franck WL, Birke SR, Chang W-S, Sangurdekar DP, Cytryn E, Joshi T, Sadowsky M, Stacey G, Xu D, Emerich DW. Symbiosis; 63(3):123-135.

Date published: July 1, 2014
Featured in this article: Trupti Joshi, Gary Stacey, Dong Xu.

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MET-COFEA: A liquid chromatography/mass spectrometry data processing platform for metabolite compound feature extraction and annotation. Zhang W, Chang J, Lei Z, Huhman D, Sumner LW, Zhao PX. Analytical Chemistry; 86(13):6245-6253.

Date published: July 1, 2014
Featured in this article: Zhentian Lei, Lloyd Sumner.

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Characteristics and safety assessment of intractable proteins in genetically modified crops. Bushey DF, Bannon GA, Delaney BF, Graser G, Hefford M, Jiang X, Lee TC, Madduri KM, Pariza M, Privalle LS, Ranjan R, Saab-Rincon G, Schafer BW, Thelen JJ, Zhang JXQ, Harper MS. Regulatory Toxicology and Pharmacology; 69(2):154-170.

Date published: July 1, 2014
Featured in this article: Jay Thelen.

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Transcriptome and methylome profiling reveals relics of genome dominance in the mesopolyploid Brassica oleracea. Parkin IAP, Koh C, Tang H, Robinson SJ, Kagale S, Clarke WE, Town CD, Nixon J, Krishnakumar V, Bidwell SL, Denoeud F, Belcram H, Links MG, Just J, Clarke C, Bender T, Huebert T, Mason AS, Chris Pires J, Barker G, Moore J, Walley PG, Manoli S, Batley J, Edwards D, Nelson MN, Wang X, Paterson AH, King G, Bancroft I, Chalhoub B, Sharpe AG. Genome Biology; 15(6):R77.

Date published: June 10, 2014
Featured in this article: J. Chris Pires.

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The Arabidopsis immune adaptor SRFR1 interacts with TCP transcription factors that redundantly contribute to effector-triggered immunity. Kim SH, Son GH, Bhattacharjee S, Kim HJ, Nam JC, Nguyen PDT, Hong JC, Gassmann W. Plant Journal; 78(6):978-989.

Date published: June 1, 2014
Featured in this article: Walter Gassmann.

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A point mutation in the [2Fe-2S] cluster binding region of the NAF-1 protein (H114C) dramatically hinders the cluster donor properties. Tamir S, Eisenberg-Domovich Y, Conlan AR, Stofleth JT, Lipper CH, Paddock ML, Mittler R, Jennings PA, Livnah O, Nechushtai R. Acta Crystallographica Section D: Biological Crystallography; 70(6):1572-1578.

Date published: June 1, 2014
Featured in this article: Ron Mittler.

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Phylogenomics of the plant family Araceae. Henriquez CL, Arias T, Pires JC, Croat TB, Schaal BA. Molecular Phylogenetics and Evolution; 75(1):91-102.

Date published: June 1, 2014
Featured in this article: J. Chris Pires.

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Dosage, duplication, and diploidization: Clarifying the interplay of multiple models for duplicate gene evolution over time. Conant GC, Birchler JA, Pires JC. Current Opinion in Plant Biology; 19:91-98.

Date published: June 1, 2014
Featured in this article: J. Chris Pires.

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Metabolite identification: are you sure? And how do your peers gauge your confidence?. Creek DJ, Dunn WB, Fiehn O, Griffin JL, Hall RD, Lei Z, Mistrik R, Neumann S, Schymanski EL, Sumner LW, Trengove R, Wolfender J-L. Metabolomics; 10(3):350-353.

Date published: June 1, 2014
Featured in this article: Zhentian Lei, Lloyd Sumner.

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Deletions of the SACPD-C locus elevate seed stearic acid levels but also result in fatty acid and morphological alterations in nitrogen fixing nodules. Gillman JD, Stacey MG, Cui Y, Berg HR, Stacey G. BMC Plant Biology; 14(1):143.

Date published: May 27, 2014
Featured in this article: Minviluz (Bing) Stacey, Yaya Cui, Gary Stacey.

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The brassica oleracea genome reveals the asymmetrical evolution of polyploid genomes. Liu S, Liu Y, Yang X, Tong C, Edwards D, Parkin IAP, Zhao M, Ma J, Yu J, Huang S, Wang X, Wang J, Lu K, Fang Z, Bancroft I, Yang T-J, Hu Q, Wang X, Yue Z, Li H, Yang L, Wu J, Zhou Q, Wang W, King GJ, Pires JC, Lu C, Wu Z, Sampath P, Wang Z, Guo H, Pan S, Yang L, Min J, Zhang D, Jin D, Li W, Belcram H, Tu J, Guan M, Qi C, Du D, Li J, Jiang L, Batley J, Sharpe AG, Park B-S, Ruperao P, Cheng F, Waminal NE, Huang Y, Dong C, Wang L, Li J, Hu Z, Zhuang M, Huang Y, Huang J, Shi J, Mei D, Liu J, Lee T-H, Wang J, Jin H, Li Z, Li X, Zhang J, Xiao L, Zhou Y, Liu Z, Liu X, Qin R, Tang X, Liu W, Wang Y, Zhang Y, Lee J, Kim HH, Denoeud F, Xu X, Liang X, Hua W, Wang X, Wang J, Chalhoub B, Paterson AH. Nature Communications; 5:3930.

Date published: May 23, 2014
Featured in this article: J. Chris Pires.

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Detection of protein phosphorylation and charge isoforms using vertical one-dimensional isoelectric focusing gels. Anderson JC, Peck SC. Methods in Molecular Biology; 1171:39-46.

Date published: May 20, 2014
Featured in this article: Scott Peck.

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Decreased abundance of type III secretion systeminducing signals in Arabidopsis mkp1 enhances resistance against Pseudomonas syringae. Anderson JC, Wan Y, Kim Y-M, Pasa-Tolic L, Metz TO, Peck SC. Proceedings of the National Academy of Sciences of the United States of America; 111(18):6846-6851.

Date published: May 6, 2014
Featured in this article: Scott Peck.

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Saliva-microbe interactions and salivary gland dysfunction. Baker OJ, Edgerton M, Kramer JM, Ruhl S. Advances in dental research; 26(1):7-14.

Date published: May 1, 2014
Featured in this article: Olga Baker.

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Phytochelatin-metal(loid) transport into vacuoles shows different substrate preferences in barley and Arabidopsis. Song W-Y, Mendoza-Cózatl DG, Lee Y, Schroeder JI, Ahn S-N, Lee H-S, Wicker T, Martinoia E. Plant, Cell and Environment; 37(5):1192-1201.

Date published: May 1, 2014
Featured in this article: David Mendoza-Cózatl.

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The combined effect of salinity and heat reveals a specific physiological, biochemical and molecular response in tomato plants. Rivero RM, Mestre TC, Mittler R, Rubio F, Garcia-Sanchez F, Martinez V. Plant, Cell and Environment; 37(5):1059-1073.

Date published: May 1, 2014
Featured in this article: Ron Mittler.

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A soybean acyl carrier protein, GmACP, Is important for root nodule symbiosis. Wang J, Tóth K, Tanaka K, Nguyen CT, Yan Z, Brechenmacher L, Dahmen J, Chen M, Thelen JJ, Qiu L, Stacey G. Molecular Plant-Microbe Interactions; 27(5):415-423.

Date published: May 1, 2014
Featured in this article: Jay Thelen, Gary Stacey.

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Current perspectives and the future of domestication studies. Larson G, Piperno DR, Allaby RG, Purugganan MD, Andersson L, Arroyo-Kalin M, Barton L, Vigueira CC, Denham T, Dobney K, Doust AN, Gepts P, Gilbert MTP, Gremillion KJ, Lucas L, Lukens L, Marshall FB, Olsen KM, Pires JC, Richerson PJ, De Casas RR, Sanjur OI, Thomas MG, Fuller DQ. Proceedings of the National Academy of Sciences of the United States of America; 111(17):6139-6146.

Date published: April 29, 2014
Featured in this article: J. Chris Pires.

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Storytelling and story testing in domestication. Gerbault P, Allaby RG, Boivin N, Rudzinski A, Grimaldi IM, Pires JC, Climer Vigueira C, Dobney K, Gremillion KJ, Barton L, Arroyo-Kalin M, Purugganan MD, De Casas RR, Bollongino R, Burger J, Fuller DQ, Bradley DG, Balding DJ, Richerson PJ, Gilbert MTP, Larson G, Thomas MG. Proceedings of the National Academy of Sciences of the United States of America; 111(17):6159-6164.

Date published: April 29, 2014
Featured in this article: J. Chris Pires.

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Erratum: Origin, inheritance, and gene regulatory consequences of genome dominance in polyploids (Proceedings of the National Academy of Sciences of the United States of America (2014) 111 (5283-5288)). Woodhouse MR, Cheng F, Pires JC, Lisch D, Freeling M, Wang X. Proceedings of the National Academy of Sciences of the United States of America; 111(17):6527.

Date published: April 29, 2014
Featured in this article: J. Chris Pires.

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Soybean ureases, but not that of bradyrhizobium japonicum, are involved in the process of soybean root nodulation. Medeiros-Silva M, Franck WL, Borba MP, Pizzato SB, Stodtman KN, Emerich DW, Stacey G, Polacco JC, Carlini CR. Journal of Agricultural and Food Chemistry; 62(16):3517-3524.

Date published: April 23, 2014
Featured in this article: Gary Stacey.

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Major soybean maturity gene haplotypes revealed by SNPViz analysis of 72 sequenced soybean genomes. Langewisch T, Zhang H, Vincent R, Joshi T, Xu D, Bilyeu K. PLoS ONE; 9(4):e94150.

Date published: April 11, 2014
Featured in this article: Trupti Joshi, Dong Xu.

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Antifungal activity of citrus essential oils. Jing L, Lei Z, Li L, Xie R, Xi W, Guan Y, Sumner LW, Zhou Z. Journal of Agricultural and Food Chemistry; 62(14):3011-3033.

Date published: April 9, 2014
Featured in this article: Zhentian Lei, Lloyd Sumner.

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Integrated strategy reveals the protein interface between cancer targets Bcl-2 and NAF-1. Tamir S, Rotem-Bamberger S, Katz C, Morcos F, Hailey KL, Zuris JA, Wang C, Conlan AR, Lipper CH, Paddock ML, Mittler R, Onuchicc JN, Jennings PA, Friedler A, Nechushtai R. Proceedings of the National Academy of Sciences of the United States of America; 111(14):5177-5182.

Date published: April 8, 2014
Featured in this article: Ron Mittler.

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Wnt7a stimulates myogenic stem cell motility and engraftment resulting in improved muscle strength. Bentzinger CF, von Maltzahn J, Dumont NA, Stark DA, Wang YX, Nhan K, Frenette J, Cornelison DDW, Rudnicki MA. Journal of Cell Biology; 205(1):97-111.

Date published: April 1, 2014
Featured in this article: D Cornelison.

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Loss of P2Y2 nucleotide receptors enhances early pathology in the TgCRND8 mouse model of Alzheimer’s disease. Ajit D, Woods LT, Camden JM, Thebeau CN, El-Sayed FG, Greeson GW, Erb L, Petris MJ, Miller DC, Sun GY, Weisman GA. Molecular Neurobiology; 49(2):1031-1042.

Date published: April 1, 2014
Featured in this article: Lucas Woods, Jean Camden, Michael Petris, Gary Weisman.

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Multisite phosphorylation of 14-3-3 proteins by calcium-dependent protein kinases. Swatek KN, Wilson RS, Ahsan N, Tritz RL, Thelen JJ. Biochemical Journal; 459(1):15-25.

Date published: April 1, 2014
Featured in this article: Jay Thelen.

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Origin, inheritance, and gene regulatory consequences of genome dominance in polyploids. Woodhouse MR, Cheng F, Pires JC, Lisch D, Freeling M, Wang X. Proceedings of the National Academy of Sciences of the United States of America; 111(14):5283-5288.

Date published: March 24, 2014
Featured in this article: J. Chris Pires.

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Diverse viral glycoproteins as well as CD4 co-package into the same human immunodeficiency virus (HIV-1) particles. Gregory DA, Olinger GY, Lucas TM, Johnson MC. Retrovirology; 11(1):28.

Date published: March 3, 2014
Featured in this article: Marc Johnson.

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Expression of resolvin D1 biosynthetic pathways in salivary epithelium. Leigh NJ, Nelson JW, Mellas RE, Aguirre A, Baker OJ. Journal of Dental Research; 93(3):300-305.

Date published: March 1, 2014
Featured in this article: Olga Baker.

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Zn-bis-glutathionate is the best co-substrate of the monomeric phytochelatin synthase from the photosynthetic heavy metal-hyperaccumulator Euglena gracilis. García-García JD, Girard L, Hernández G, Saavedra E, Pardo JP, Rodríguez-Zavala JS, Encalada R, Reyes-Prieto A, Mendoza-Cózatl DG, Moreno-Sánchez R. Metallomics; 6(3):604-616.

Date published: March 1, 2014
Featured in this article: David Mendoza-Cózatl.

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ROS as key players in plant stress signalling. Baxter A, Mittler R, Suzuki N. Journal of Experimental Botany; 65(5):1229-1240.

Date published: March 1, 2014
Featured in this article: Ron Mittler.

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Moving toward a precise nutrition: Preferential loading of seeds with essential nutrients over non-essential toxic elements. Khan MA, Castro-Guerrero N, Mendoza-Cozatl DG. Frontiers in Plant Science; 5(FEB):51.

Date published: February 20, 2014
Featured in this article: Norma Castro-Guerrero, David Mendoza-Cózatl.

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A systems-wide comparison of red rice (Oryza longistaminata) tissues identifies rhizome specific genes and proteins that are targets for cultivated rice improvement. He R, Salvato F, Park J-J, Kim M-J, Nelson W, Balbuena TS, Willer M, Crow JA, May GD, Soderlund CA, Thelen JJ, Gang DR. BMC Plant Biology; 14(1):46.

Date published: February 12, 2014
Featured in this article: Jay Thelen.

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Systematics and evolution of inflorescence structure in the tradescantia alliance (commelinaceae). Hertweck KL, Pires JC. Systematic Botany; 39(1):105-116.

Date published: February 1, 2014
Featured in this article: J. Chris Pires.

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The potato tuber mitochondrial proteome. Salvato F, Havelund JF, Chen M, Shyama Prasad Rao R, Rogowska-Wrzesinska A, Jensen ON, Gang DR, Thelen JJ, Møller IM. Plant Physiology; 164(2):637-653.

Date published: February 1, 2014
Featured in this article: Jay Thelen.

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Initial description of the developing soybean seed protein Lys-Nᵋ-acetylome. Smith-Hammond CL, Swatek KN, Johnston ML, Thelen JJ, Miernyk JA. Journal of Proteomics; 96:56-66.

Date published: January 16, 2014
Featured in this article: Jay Thelen.

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ALX/FPR2 receptor for RvD1 is expressed and functional in salivary glands. Nelson JW, Leigh NJ, Mellas RE, McCall AD, Aguirre A, Baker OJ. American Journal of Physiology - Cell Physiology; 306(2):C178-C185.

Date published: January 15, 2014
Featured in this article: Olga Baker.

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Screening inhibitory potential of anti-HIV RT RNA aptamers. Lange MJ, Burke DH. Methods in Molecular Biology; 1103:11-29.

Date published: January 1, 2014
Featured in this article: Margaret Lange, Donald Burke-Agüero.

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RNA structural analysis by enzymatic digestion. Biondi E, Burke DH. Methods in Molecular Biology; 1086:41-52.

Date published: January 1, 2014
Featured in this article: Donald Burke-Agüero.

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Preface. Burke-Aguero DH. Methods in Enzymology; 549(C):xix-xxiii.

Date published: January 1, 2014
Featured in this article: Donald Burke-Agüero.

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Rhabdomyosarcoma: Current challenges and their implications for developing therapies. Hettmer S, Li Z, Billin AN, Barr FG, Cornelison D, Ehrlich AR, Guttridge DC, Hayes-Jordan A, Helman LJ, Houghton PJ, Khan J, Langenau DM, Linardic CM, Pal R, Partridge TA, Pavlath GK, Rota R, Schafer BW, Shipley J, Stillman B, Wexler LH, Wagers AJ, Keller C. Cold Spring Harbor Perspectives in Medicine; 4(11):1-8.

Date published: January 1, 2014
Featured in this article: D Cornelison.

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A unified nomenclature of nitrate transporter 1/peptide transporter family members in plants. Léran S, Varala K, Boyer J-C, Chiurazzi M, Crawford N, Daniel-Vedele F, David L, Dickstein R, Fernandez E, Forde B, Gassmann W, Geiger D, Gojon A, Gong J-M, Halkier BA, Harris JM, Hedrich R, Limami AM, Rentsch D, Seo M, Tsay Y-F, Zhang M, Coruzzi G, Lacombe B. Trends in Plant Science; 19(1):5-9.

Date published: January 1, 2014
Featured in this article: Walter Gassmann.

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Members of the NPF3 transporter subfamily encode pathogen-inducible nitrate/nitrite transporters in grapevine and arabidopsis. Pike S, Gao F, Kim MJ, Kim SH, Schachtman DP, Gassmann W. Plant and Cell Physiology; 55(1):162-170.

Date published: January 1, 2014
Featured in this article: Sharon Pike, Walter Gassmann.

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Spinal muscular atrophy: A motor neuron disorder or a multi-organ disease?. Shababi M, Lorson CL, Rudnik-Schöneborn SS. Journal of Anatomy; 224(1):15-28.

Date published: January 1, 2014
Featured in this article: Christian Lorson.

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Diversification times among Brassica (Brassicaceae) crops suggest hybrid formation after 20 million years of divergence. Arias T, Beilstein MA, Tang M, McKain MR, Pires JC. American Journal of Botany; 101(1):86-91.

Date published: January 1, 2014
Featured in this article: J. Chris Pires.

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Soybean knowledge base (SoyKB): A web resource for integration of soybean translational genomics and molecular breeding. Joshi T, Fitzpatrick MR, Chen S, Liu Y, Zhang H, Endacott RZ, Gaudiello EC, Stacey G, Nguyen HT, Xu D. Nucleic Acids Research; 42(D1):D1245-D1252.

Date published: January 1, 2014
Featured in this article: Trupti Joshi, Gary Stacey, Dong Xu.

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Virtual physical examination (VPE): A multimedia system for education in medicine. Joshi T, Williamson R, Patil K, Viyanon S, Li X, Zhang Y, Qi W, Li D, Zimmer J, Illindala U, Foley S, Campbell R, Duan Y, Xu D. International Journal of Functional Informatics and Personalised Medicine; 4(3-4):181-197.

Date published: January 1, 2014
Featured in this article: Trupti Joshi, Dong Xu.

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4′-Ethynyl-2-fluoro-2′-deoxyadenosine (EFdA) inhibits HIV-1 reverse transcriptase with multiple mechanisms. Michailidis E, Huber AD, Ryan EM, Ong YT, Leslie MD, Matzek KB, Singh K, Marchand B, Hagedorn AN, Kirby KA, Rohan LC, Kodama EN, Mitsuya H, Parniak MA, Sarafianosa SG. Journal of Biological Chemistry; 289(35):24533-24548.

Date published: January 1, 2014
Featured in this article: Kamlendra Singh.

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Identification of a plant receptor for extracellular ATP. Choi J, Tanaka K, Cao Y, Qi Y, Qiu J, Liang Y, Lee SY, Stacey G. Science; 343(6168):290-294.

Date published: January 1, 2014
Featured in this article: Gary Stacey.

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Lipochitooligosaccharide recognition: An ancient story. Liang Y, Tóth K, Cao Y, Tanaka K, Espinoza C, Stacey G. Journal of Physiology; 204(2):289-296.

Date published: January 1, 2014
Featured in this article: Gary Stacey.

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An atlas of soybean small RNAs identifies phased siRNAs from hundreds of coding genes. Arikit S, Xia R, Kakrana A, Huang K, Zhai J, Yan Z, Valdés-López O, Prince S, Musket TA, Nguyen HT, Stacey G, Meyers BC. Plant Cell; 26(12):4584-4601.

Date published: January 1, 2014
Featured in this article: Gary Stacey.

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The kinase LYK5 is a major chitin receptor in Arabidopsis and forms a chitin-induced complex with related kinase CERK1. Cao Y, Liang Y, Tanaka K, Nguyen CT, Jedrzejczak RP, Joachimiak A, Stacey G. eLife; 3:e03766.

Date published: January 1, 2014
Featured in this article: Gary Stacey.

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P³DB 3.0: From plant phosphorylation sites to protein networks. Yao Q, Ge H, Wu S, Zhang N, Chen W, Xu C, Gao J, Thelen JJ, Xu D. Nucleic Acids Research; 42(D1):D1206-D1213.

Date published: January 1, 2014
Featured in this article: Chunhui Xu, Jay Thelen, Dong Xu.

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Global quantitative proteomics using spectral counting: An inexpensive experimental and bioinformatics workflow for deep proteome coverage. Balbuena TS, Demartini DR, Thelen JJ. Methods in Molecular Biology; 1072:171-183.

Date published: January 1, 2014
Featured in this article: Jay Thelen.

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Purification of protein complexes and characterization of protein-protein interactions. Swatek KN, Lee CB, Thelen JJ. Methods in Molecular Biology; 1062:609-628.

Date published: January 1, 2014
Featured in this article: Jay Thelen.

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2013

PiggyBac transposon plus insulators overcome epigenetic silencing to provide for stable signaling pathway reporter cell lines. Mossine VV, Waters JK, Hannink M, Mawhinney TP. PLoS ONE; 8(12):e85494.

Date published: December 20, 2013
Featured in this article: Mark Hannink.

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Soybean knowledge base (SoyKB): Bridging the gap between soybean translational genomics and breeding. Joshi T, Fitzpatrick MR, Chen S, Liu Y, Zhang H, Endacott RZ, Gaudiello EC, Stacey G, Nguyen HT, Xu D. Proceedings - 2013 IEEE International Conference on Bioinformatics and Biomedicine, IEEE BIBM 2013; 42-44.

Date published: December 18, 2013
Featured in this article: Trupti Joshi, Gary Stacey, Dong Xu.

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Retention projection enables reliable use of shared gas chromatographic retention data across laboratories, instruments, and methods. Barnes BB, Wilson MB, Carr PW, Vitha MF, Broeckling CD, Heuberger AL, Prenni J, Janis GC, Corcoran H, Snow NH, Chopra S, Dhandapani R, Tawfall A, Sumner LW, Boswell PG. Analytical Chemistry; 85(23):11650-11657.

Date published: December 3, 2013
Featured in this article: Lloyd Sumner.

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Genome-wide analysis of branched-chain amino acid levels in Arabidopsis Seeds. Angelovici R, Lipka AE, Deason N, Gonzalez-Jorge S, Lin H, Cepela J, Buell R, Gore MA, DellaPenna, D. Plant Cell; 25(12):4827-4843.

Date published: December 1, 2013
Featured in this article: Ruthie Angelovici.

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Carotenoid cleavage dioxygenase4 is a negative regulator of β-carotene content in arabidopsis seeds. Gonzalez-Jorge S, Ha S-H, Magallanes-Lundback M, Gilliland LU, Zhou A, Lipka AE, Nguyen Y-N, Angelovici R, Lin H, Cepela J, Little H, Buell CR, Gore MA, DellaPenna, D. Plant Cell; 25(12):4812-4826.

Date published: December 1, 2013
Featured in this article: Ruthie Angelovici.

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Natural Variation in Small Molecule-Induced TIR-NB-LRR Signaling Induces Root Growth Arrest via EDS1- and PAD4-Complexed R Protein VICTR in Arabidopsis. Kim T-H, Kunz H-H, Bhattacharjee S, Hauser F, Park J, Engineer C, Liu A, Ha T, Parker JE, Gassmann W, Schroeder JI. Plant Cell; 24(12):5177-5192.

Date published: December 1, 2013
Featured in this article: Walter Gassmann.

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Recombination can lead to spurious results in retroviral transduction with dually fluorescent reporter genes. Salamango DJ, Evans DA, Baluyot MF, Furlong JN, Johnson MC. Journal of Virology; 87(24):13900-13903.

Date published: December 1, 2013
Featured in this article: Marc Johnson.

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Retrovirus glycoprotein functionality requires proper alignment of the ectodomain and the membrane-proximal cytoplasmic tail. Janaka SK, Gregory DA, Johnson MC. Journal of Virology; 87(23):12805-12813.

Date published: December 1, 2013
Featured in this article: Marc Johnson.

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Effects of substitutions at the 4′ and 2 positions on the bioactivity of 4′-ethynyl-2-fluoro-2′-deoxyadenosine. Kirby KA, Michailidis E, Fetterly TL, Steinbach MA, Singh K, Marchand B, Leslie MD, Hagedorn AN, Kodama EN, Marquez VE, Hughes SH, Mitsuya H, Parniak MA, Sarafianos SG. Antimicrobial Agents and Chemotherapy; 57(12):6254-6264.

Date published: December 1, 2013
Featured in this article: Kamlendra Singh.

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miR172 regulates soybean nodulation. Yan Z, Hossain MS, Wang J, Valdés-López O, Liang Y, Libault M, Qiu L, Stacey G. Molecular Plant-Microbe Interactions; 26(12):1371-1377.

Date published: December 1, 2013
Featured in this article: Gary Stacey.

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Whole genome and tandem duplicate retention facilitated glucosinolate pathway diversification in the mustard family. Hofberger JA, Lyons E, Edger PP, Chris Pires J, Eric Schranz M. Genome Biology and Evolution; 5(11):2155-2173.

Date published: November 1, 2013
Featured in this article: J. Chris Pires.

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Circles within circles: Crosstalk between protein Ser/Thr/Tyr-phosphorylation and Met oxidation. Rao RSP, Xu D, Thelen JJ, Miernyk JA. BMC Bioinformatics; 14(SUPPL.14):S14.

Date published: October 9, 2013
Featured in this article: Dong Xu, Jay Thelen.

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Growth factors polymerized within fibrin hydrogel promote amylase production in parotid cells. McCall AD, Nelson JW, Leigh NJ, Duffey ME, Lei P, Andreadis ST, Baker OJ. Tissue Engineering - Part A; 19(19-20):2215-2225.

Date published: October 1, 2013
Featured in this article: Olga Baker.

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High-Throughput RNA Sequencing of Pseudomonas-Infected Arabidopsis Reveals Hidden Transcriptome Complexity and Novel Splice Variants. Howard BE, Hu Q, Babaoglu AC, Chandra M, Borghi M, Tan X, He L, Winter-Sederoff H, Gassmann W, Veronese P, Heber S. PLoS ONE; 8(10):e74183.

Date published: October 1, 2013
Featured in this article: Walter Gassmann.

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Restoration of SMN to Emx-1 expressing cortical neurons is not sufficient to provide benefit to a severe mouse model of Spinal Muscular Atrophy. Taylor AS, Glascock JJ, Rose FF Jr, Lutz C, Lorson CL. Transgenic Research; 22(5):1029-1036.

Date published: October 1, 2013
Featured in this article: Christian Lorson.

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Epigenome-wide inheritance of cytosine methylation variants in a recombinant inbred population. Schmitz RJ, He Y, Valdés-López O, Khan SM, Joshi T, Urich MA, Nery JR, Diers B, Xu D, Stacey G, Ecker JR. Genome Research; 23(10):1663-1674.

Date published: October 1, 2013
Featured in this article: Trupti Joshi, Dong Xu, Gary Stacey.

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Predicting gene regulatory networks of soybean nodulation from RNA-Seq transcriptome data. Zhu M, Dahmen JL, Stacey G, Cheng J. BMC Bioinformatics; 14(1):278.

Date published: September 22, 2013
Featured in this article: Gary Stacey.

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New clues in the nucleus: Transcriptional reprogramming in effector-triggered immunity. Bhattacharjee S, Garner CM, Gassmann W. Frontiers in Plant Science; 4(SEP):364.

Date published: September 13, 2013
Featured in this article: Walter Gassmann.

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NAF-1 and mitoNEET are central to human breast cancer proliferation by maintaining mitochondrial homeostasis and promoting tumor growth. Sohn Y-S, Tamir S, Song L, Michaeli D, Matouk I, Conlan AR, Harir Y, Holt SH, Shulaev V, Paddock ML, Hochberg A, Cabanchick IZ, Onuchic JN, Jennings PA, Nechushtai R, Mittler R. Proceedings of the National Academy of Sciences of the United States of America; 110(36):14676-14681.

Date published: September 3, 2013
Featured in this article: Ron Mittler.

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Enter the matrix: Shape, signal and superhighway. Lund DK, Cornelison DDW. FEBS Journal; 280(17):4089-4099.

Date published: September 1, 2013
Featured in this article: D Cornelison.

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Infantile spinale Muskelatrophie: mehr als eine Motoneuronerkrankung? [Infantile spinal muscular atrophy: More than a motor neuron disease?]. Rudnik-Schöneborn S, Lorson CL, Shababi M. Medizinische Genetik; 25(3):347-351.

Date published: September 1, 2013
Featured in this article: Christian Lorson.

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Temporal-spatial interaction between reactive oxygen species and abscisic acid regulates rapid systemic acclimation in plants. Suzuki N, Miller G, Salazar C, Mondal HA, Shulaev E, Cortes DF, Shuman JL, Luo X, Shah J, Schlauch K, Shulaev V, Mittler R. Plant Cell; 25(9):3553-3569.

Date published: September 1, 2013
Featured in this article: Ron Mittler.

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An atlas of over 90,000 conserved noncoding sequences provides insight into crucifer regulatory regions. Haudry A, Platts AE, Vello E, Hoen DR, Leclercq M, Williamson RJ, Forczek E, Joly-Lopez Z, Steffen JG, Hazzouri KM, Dewar K, Stinchcombe JR, Schoen DJ, Wang X, Schmutz J, Town CD, Edger PP, Pires JC, Schumaker KS, Jarvis DE, Mandáková T, Lysak MA, Van Den Bergh E, Schranz ME, Harrison PM, Moses AM. Nature Genetics; 45(8):891-898.

Date published: August 1, 2013
Featured in this article: J. Chris Pires.

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Is DNA Alive? A Study of Conceptual Change Through Targeted Instruction. Witzig SB, Freyermuth SK, Siegel MA, Izci K, Pires JC. Research in Science Education; 43(4):1361-1375.

Date published: August 1, 2013
Featured in this article: J. Chris Pires.

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Identification of antioxidants in methanol extracts from soymilk. Zhang H, Sumner L, Lei Z-T, Huhman D, Watson B, Fu F-Y, Yu J. Modern Food Science and Technology; 29(8):1999-2003.

Date published: August 1, 2013
Featured in this article: Lloyd Sumner, Zhentian Lei.

Enhancement of SMN protein levels in a mouse model of spinal muscular atrophy using novel drug-like compounds. Cherry JJ, Osman EY, Evans MC, Choi S, Xing X, Cuny GD, Glicksman MA, Lorson CL, Androphy EJ. EMBO Molecular Medicine; 5(7):1103-1118.

Date published: July 1, 2013
Featured in this article: Christian Lorson.

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Linking genes of unknown function with abiotic stress responses by high-throughput phenotype screening. Luhua S, Hegie A, Suzuki N, Shulaev E, Luo X, Cenariu D, Ma V, Kao S, Lim J, Gunay MB, Oosumi T, Lee SC, Harper J, Cushman J, Gollery M, Girke T, Bailey-Serres J, Stevenson RA, Zhu J-K, Mittler R. Physiologia Plantarum; 148(3):322-333.

Date published: July 1, 2013
Featured in this article: Ron Mittler.

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Functional genomics, challenges and perspectives for the future. Mittler R, Shulaev V. Physiologia Plantarum; 148(3):317-321.

Date published: July 1, 2013
Featured in this article: Ron Mittler.

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Novel inhibitors of severe acute respiratory syndrome coronavirus entry that act by three distinct mechanisms. Adedeji AO, Severson W, Jonsson C, Singh K, Weiss SR, Sarafianosa SG. Journal of Virology; 87(14):8017-8028.

Date published: July 1, 2013
Featured in this article: Kamlendra Singh.

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Characterization of the formation of branched short-chain fatty acid:coas for bitter acid biosynthesis in hop glandular trichomes. Xu H, Zhang F, Liu B, Huhman DV, Sumner LW, Dixon RA, Wang G. Molecular Plant; 6(4):1301-1317.

Date published: July 1, 2013
Featured in this article: Lloyd Sumner.

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Medicago glucosyltransferase UGT72L1: Potential roles in proanthocyanidin biosynthesis. Pang Y, Cheng X, Huhman DV, Ma J, Peel GJ, Yonekura-Sakakibara K, Saito K, Shen G, Sumner LW, Tang Y, Wen J, Yun J, Dixon RA. Planta; 238(1):139-154.

Date published: July 1, 2013
Featured in this article: Lloyd Sumner.

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The response of Asterochloris erici (Ahmadjian) Skaloud et Peksa to desiccation: A proteomic approach. Gasulla F, Jain R, Barreno E, Guéra A, Balbuena TS, Thelen JJ, Oliver MJ. Plant, Cell and Environment; 36(7):1363-1378.

Date published: July 1, 2013
Featured in this article: Jay Thelen.

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Functional Complementation of a Model Target to Study Vpu Sensitivity. Janaka SK, Faurot J, Johnson MC. PLoS ONE; 8(6):e68507.

Date published: June 28, 2013
Featured in this article: Marc Johnson.

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Hypersusceptibility mechanism of Tenofovir-resistant HIV to EFdA. Michailidis E, Ryan EM, Hachiya A, Kirby KA, Marchand B, Leslie MD, Huber AD, Ong YT, Jackson JC, Singh K, Kodama EN, Mitsuya H, Parniak MA, Sarafianos SG. Retrovirology; 10(1):65.

Date published: June 24, 2013
Featured in this article: Kamlendra Singh.

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Label-free quantitative proteomic analysis of systemic responses to local wounding and virus infection in Arabidopsis thaliana. Niehl A, Zhang ZJ, Kuiper M, Peck SC, Heinlein M. Journal of Proteome Research; 12(6):2491-2503.

Date published: June 7, 2013
Featured in this article: Scott Peck.

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Sequences in gibbon ape leukemia virus envelope that confer sensitivity to HIV-1 accessory protein Vpu (Erratum). Janaka SK, Lucas TM, Johnson MC. Journal of Virology; 87(12):7198.

Date published: June 1, 2013
Featured in this article: Marc Johnson.

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Preface. McSteen P, Scheres B, Zhao Y. Journal of Experimental Botany; 64(9):2539-2540.

Date published: June 1, 2013
Featured in this article: Paula McSteen.

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Up-regulation and activation of the P2Y2 nucleotide receptor mediate neurite extension in IL-1β-treated mouse primary cortical neurons. Peterson TS, Thebeau CN, Ajit D, Camden JM, Woods LT, Wood WG, Petris MJ, Sun GY, Erb L, Weisman GA. Journal of Neurochemistry; 125(6):885-896.

Date published: June 1, 2013
Featured in this article: Jean Camden, Lucas Woods, Michael Petris, Gary Weisman.

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Repeated exposure to 5D9, an inhibitor of 3D polymerase, effectively limits the replication of foot-and-mouth disease virus in host cells. Rai DK, Schafer EA, Singh K, McIntosh MA, Sarafianos SG, Rieder E. Antiviral Research; 98(3):380-385.

Date published: June 1, 2013
Featured in this article: Kamlendra Singh.

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Nutrient-Deprivation Autophagy Factor-1 (NAF-1): Biochemical Properties of a Novel Cellular Target for Anti-Diabetic Drugs. Tamir S, Zuris JA, Agranat L, Lipper CH, Conlan AR, Michaeli D, Harir Y, Paddock ML, Mittler R, Cabantchik ZI, Jennings PA, Nechushtai R. PLoS ONE; 8(5):e61202.

Date published: May 22, 2013
Featured in this article: Ron Mittler.

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Elemental Concentrations in the Seed of Mutants and Natural Variants of Arabidopsis thaliana Grown under Varying Soil Conditions. McDowell SC, Akmakjian G, Sladek C, Mendoza-Cozatl D, Morrissey JB, Saini N, Mittler R, Baxter I, Salt DE, Ward JM, Schroeder JI, Guerinot ML, Harper JF. PLoS ONE; 8(5):e63014.

Date published: May 6, 2013
Featured in this article: David Mendoza-Cózatl, Ron Mittler.

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Development and characterization of an SMN2-based intermediate mouse model of spinal muscular atrophy. Cobb MS, Rose FF, Rindt H, Glascock JJ, Shababi M, Miller MR, Osman EY, Yen P-F, Garcia ML, Martin BR, Wetz MJ, Mazzasette C, Feng Z, Ko C-P, Lorson CL. Human Molecular Genetics; 22(9):1843-1855.

Date published: May 1, 2013
Featured in this article: Christian Lorson.

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Sub-cellular proteomics of Medicago truncatula. Lee J, Lei Z, Watson BS, Sumner LW. Frontiers in Plant Science; 4(APR):112.

Date published: April 30, 2013
Featured in this article: Zhentian Lei, Lloyd Sumner.

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Suppression of plant defense responses by extracellular metabolites from Pseudomonas syringae pv. tabaci in Nicotiana benthamiana. Lee S, Yang DS, Uppalapati SR, Sumner LW, Mysore KS. BMC Plant Biology; 13(1):65.

Date published: April 18, 2013
Featured in this article: Lloyd Sumner.

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Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in arabidopsis thaliana. Umezawa T, Sugiyama N, Takahashi F, Anderson JC, Ishihama Y, Peck SC, Shinozaki K. Science Signaling; 6(270):rs8.

Date published: April 9, 2013
Featured in this article: Scott Peck.

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Watching the grin fade: Tracing the effects of polyploidy on different evolutionary time scales. Mayfield-Jones D, Washburn JD, Arias T, Edger PP, Pires JC, Conant GC. Seminars in Cell and Developmental Biology; 24(4):320-331.

Date published: April 1, 2013
Featured in this article: J. Chris Pires.

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Molecular systematics of Allium subgenus Amerallium (Amaryllidaceae) in North America. Wheeler EJ, Mashayekhi S, Mcneal DW, Travis Columbus J, Chris Pires J. American Journal of Botany; 100(4):701-711.

Date published: April 1, 2013
Featured in this article: J. Chris Pires.

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The fate of Arabidopsis thaliana homeologous CNSs and their motifs in the paleohexaploid Brassica rapa. Subramaniam S, Wang X, Freeling M, Pires JC. Genome Biology and Evolution; 5(4):646-660.

Date published: April 1, 2013
Featured in this article: J. Chris Pires.

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ACYL-LIPID DESATURASE2 is required for chilling and freezing tolerance in Arabidopsis. Chen M, Thelen JJ. Plant Cell; 25(4):1430-1444.

Date published: April 1, 2013
Featured in this article: Jay Thelen.

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Biochemistry, proteomics, and phosphoproteomics of plant mitochondria from non-photosynthetic cells. Havelund JF, Thelen JJ, Møller IM. Frontiers in Plant Science; 4(MAR):51.

Date published: March 13, 2013
Featured in this article: Jay Thelen.

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Developmental distribution of the plasma membrane-enriched proteome in the maize primary root growth zone. Zhang Z, Voothuluru P, Yamaguchi M, Sharp RE, Peck SC. Frontiers in Plant Science; 4(MAR):33.

Date published: March 6, 2013
Featured in this article: Scott Peck.

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Understanding resolvin signaling pathways to improve oral health. Keinan D, Leigh NJ, Nelson JW, De Oleo L, Baker OJ. International Journal of Molecular Sciences; 14(3):5501-5518.

Date published: March 1, 2013
Featured in this article: Olga Baker.

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Lewis acid catalysis of phosphoryl transfer from a copper(II)-NTP complex in a kinase ribozyme. Biondi E, Poudyal RR, Forgy JC, Sawyer AW, Maxwell AWR, Burke DH. Nucleic Acids Research; 41(5):3327-3328.

Date published: March 1, 2013
Featured in this article: Donald Burke-Agüero.

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Potent inhibition of HIV-1 reverse transcriptase and replication by nonpseudoknot, “UCAA-motif” RNA aptamers. Whatley AS, Ditzler MA, Lange MJ, Biondi E, Sawyer AW, Chang JL, Franken JD, Burke DH. Molecular Therapy - Nucleic Acids; 2:e71.

Date published: February 5, 2013
Featured in this article: Margaret Lange, Donald Burke-Agüero.

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Alteration of the interconversion of pyruvate and malate in the plastid or cytosol of ripening tomato fruit invokes diverse consequences on sugar but similar effects on cellular organic acid, metabolism, and transitory starch accumulation. Osorio S, Vallarino JG, Szecowka M, Ufaz S, Tzin V, Angelovici R, Galili G, Fernie AR. Plant Physiology; 161(2):628-643.

Date published: February 1, 2013
Featured in this article: Ruthie Angelovici.

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High-throughput sequence analysis reveals structural diversity and improved potency among RNA inhibitors of HIV reverse transcriptase. Ditzler MA, Lange MJ, Bose D, Bottoms CA, Virkler KF, Sawyer AW, Whatley AS, Spollen W, Givan SA, Burke DH. Nucleic Acids Research; 41(3):1873-1884.

Date published: February 1, 2013
Featured in this article: Margaret Lange, Bill Spollen, Scott Givan, Donald Burke-Agüero.

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Multiple gag domains contribute to selective recruitment of murine leukemia virus (MLV) Env to MLV virions. Gregory DA, Lyddon TD, Johnson MC. Journal of Virology; 87(3):1518-1527.

Date published: February 1, 2013
Featured in this article: Terri Lyddon, Marc Johnson.

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A cyclic nucleotide-gated channel (CNGC16) in pollen is critical for stress tolerance in pollen reproductive development. Tunc-Ozdemir M, Tang C, Ishka MR, Brown E, Groves NR, Myers CT, Rato C, Poulsen LR, McDowell S, Miller G, Mittler R, Harper JF. Plant Physiology; 161(2):1010-1020.

Date published: February 1, 2013
Featured in this article: Ron Mittler.

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Current and emerging analytical technologies for analyzing chitin-protein binding interactions. Dahmen JL, Stacey G, Hunt HK. Reviews in Analytical Chemistry; 32(1):35-53.

Date published: February 1, 2013
Featured in this article: Gary Stacey.

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A versatile mass spectrometry-based method to both identify kinase client-relationships and characterize signaling network topology. Ahsan N, Huang Y, Tovar-Mendez A, Swatek KN, Zhang J, Miernyk JA, Xu D, Thelen JJ. Journal of Proteome Research; 12(2):937-948.

Date published: February 1, 2013
Featured in this article: Dong Xu, Jay Thelen.

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Genomic differences between cultivated soybean, G. max and its wild relative G. soja. Joshi T, Valliyodan B, Wu J-H, Lee S-H, Xu D, Nguyen HT. BMC Genomics; 14:S5.

Date published: January 21, 2013
Featured in this article: Trupti Joshi, Dong Xu.

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Affinity labeling of hepatitis C virus replicase with a nucleotide analogue: Identification of binding site. Manvar D, Singh K, Pandey VN. Biochemistry; 52(2):432-444.

Date published: January 15, 2013
Featured in this article: Kamlendra Singh.

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Genetically engineered pig models for human diseases. Prather RS, Lorson M, Ross JW, Whyte JJ, Walters E. Annual Review of Animal Biosciences; 1:203-219.

Date published: January 1, 2013
Featured in this article: Monique Lorson.

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Enhanced seed production under prolonged heat stress conditions in Arabidopsis thaliana plants deficient in cytosolic ascorbate peroxidase 2. Suzuki N, Miller G, Sejima H, Harper J, Mittler R. Journal of Experimental Botany; 64(1):253-263.

Date published: January 1, 2013
Featured in this article: Ron Mittler.

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Tnt1 retrotransposon mutagenesis: A tool for soybean functional genomics. Cui Y, Barampuram S, Stacey MG, Nathan Hancock C, Findley S, Mathieu M, Zhang Z, Parrott WA, Stacey G. Plant Physiology; 161(1):36-47.

Date published: January 1, 2013
Featured in this article: Yaya Cui, Minviluz (Bing) Stacey, Gary Stacey.

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Shoot to root communication is necessary to control the expression of iron-acquisition genes in Strategy I plants. García MJ, Romera FJ, Stacey MG, Stacey G, Villar E, Alcántara E, Pérez-Vicente R. Planta; 237(1):65-75.

Date published: January 1, 2013
Featured in this article: Minviluz (Bing) Stacey, Gary Stacey.

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The fate of duplicated genes in a polyploid plant genome. Roulin A, Auer PL, Libault M, Schlueter J, Farmer A, May G, Stacey G, Doerge RW, Jackson SA. Plant Journal; 73(1):143-153.

Date published: January 1, 2013
Featured in this article: Gary Stacey.

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Role of LysM receptors in chitin-triggered plant innate immunity. Tanaka K, Nguyen CT, Liang Y, Cao Y, Stacey G. Plant Signaling and Behavior; 8(1):147-153.

Date published: January 1, 2013
Featured in this article: Gary Stacey.

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Nonlegumes respond to rhizobial nod factors by suppressing the innate immune response. Liang Y, Cao Y, Tanaka K, Thibivilliers S, Wan J, Choi J, Kang CH, Qiu J, Stacey G. Science; 341(6152):1384-1387.

Date published: January 1, 2013
Featured in this article: Jinrong Wan, Gary Stacey.

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Aequorin luminescence-based functional calcium assay for heterotrimeric G-proteins in arabidopsis. Tanaka K, Choi J, Stacey G. Methods in Molecular Biology; 1043:45-54.

Date published: January 1, 2013
Featured in this article: Gary Stacey.

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Influence of host chloroplast proteins on Tobacco mosaic virus accumulation and intercellular movement. Bhat S, Folimonova SY, Cole AB, Ballard KD, Lei Z, Watson BS, Sumner LW, Nelson RS. Plant Physiology; 161(1):134-147.

Date published: January 1, 2013
Featured in this article: Zhentian Lei, Lloyd Sumner.

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The molecular and enzymatic basis of bitter/non-bitter flavor of citrus fruit: Evolution of branch-forming rhamnosyltransferases under domestication. Frydman A, Liberman R, Huhman DV, Carmeli-Weissberg M, Sapir-Mir M, Ophir R, Sumner LW, Eyal Y. Plant Journal; 73(1):166-178.

Date published: January 1, 2013
Featured in this article: Lloyd Sumner.

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Functional characterization of proanthocyanidin pathway enzymes from tea and their application for metabolic engineering. Pang Y, Abesinghe ISB, He J, He X, Huhman D, Mudith Mewan K, Sumner LW, Yun J, Dixon RA. Plant Physiology; 161(3):1103-1116.

Date published: January 1, 2013
Featured in this article: Lloyd Sumner.

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2012

Vpu Downmodulates Two Distinct Targets, Tetherin and Gibbon Ape Leukemia Virus Envelope, through Shared Features in the Vpu Cytoplasmic Tail. Lucas TM, Janaka SK, Stephens EB, Johnson MC. PLoS ONE; 7(12):e51741.

Date published: December 19, 2012
Featured in this article: Marc Johnson.

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Reactive oxygen species-dependent wound responses in animals and plants. Suzuki N, Mittler R. Free Radical Biology and Medicine; 53(12):2269-2276.

Date published: December 15, 2012
Featured in this article: Ron Mittler.

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Robust suppression of HIV replication by intracellularly expressed reverse transcriptase aptamers is independent of ribozyme processing. Lange MJ, Sharma TK, Whatley AS, Landon LA, Tempesta MA, Johnson MC, Burke DH. Molecular Therapy; 20(12):2304-2314.

Date published: December 1, 2012
Featured in this article: Margaret Lange, Marc Johnson, Donald Burke-Agüero.

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Replacement of huntingtin exon 1 by trans-splicing. Rindt H, Yen P-F, Thebeau CN, Peterson TS, Weisman GA, Lorson CL. Cellular and Molecular Life Sciences; 69(24):4191-4204.

Date published: December 1, 2012
Featured in this article: Gary Weisman, Christian Lorson.

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Maternofetal and neonatal copper requirements revealed by enterocyte-specific deletion of the Menkes disease protein. Wang Y, Zhu S, Hodgkinson V, Prohaska JR, Weisman GA, Gitlin JD, Petris MJ. American Journal of Physiology - Gastrointestinal and Liver Physiology; 303(11):G1236-G1244.

Date published: December 1, 2012
Featured in this article: Gary Weisman, Michael Petris.

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14-3-3 proteins SGF14C and SGF14L play critical roles during soybean nodulation. Radwan O, Wu X, Govindarajulu M, Libault M, Neece DJ, Oh M-H, Berg RH, Stacey G, Taylor CG, Huber SC, Clough SJ. Plant Physiology; 160(4):2125-2136.

Date published: December 1, 2012
Featured in this article: Gary Stacey.

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Evaluating Methods for Isolating Total RNA and Predicting the Success of Sequencing Phylogenetically Diverse Plant Transcriptomes. Johnson MTJ, Carpenter EJ, Tian Z, Bruskiewich R, Burris JN, Carrigan CT, Chase MW, Clarke ND, Covshoff S, dePamphilis CW, Edger PP, Goh F, Graham S, Greiner S, Hibberd JM, Jordon-Thaden I, Kutchan TM, Leebens-Mack J, Melkonian M, Miles N, Myburg H, Patterson J, Pires JC, Ralph P, Rolf M, Sage RF, Soltis D, Soltis P, Stevenson D, Stewart CN, Surek B, Thomsen CJM, Villarreal JC, Wu X, Zhang Y, Deyholos MK, Wong GK-S. PLoS ONE; 7(11):e50226.

Date published: November 21, 2012
Featured in this article: J. Chris Pires.

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Elongation Factor 1 alpha1 and Genes Associated with Usher Syndromes Are Downstream Targets of GBX2. Roeseler DA, Sachdev S, Buckley DM, Joshi T, Wu DK, Xu D, Hannink M, Waters ST. PLoS ONE; 7(11):e47366.

Date published: November 8, 2012
Featured in this article: Shrikesh C. "Rick" Sachdev, Trupti Joshi, Dong Xu, Mark Hannink.

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Biochemical mechanism of HIV-1 resistance to rilpivirine. Singh K, Marchand B, Rai DK, Sharma B, Michailidis E, Ryan EM, Matzek KB, Leslie MD, Hagedorn AN, Li Z, Norden PR, Hachiya A, Parniak MA, Xu H-T, Wainberg MA, Sarafianos SG. Journal of Biological Chemistry; 287(45):38110-38123.

Date published: November 2, 2012
Featured in this article: Kamlendra Singh.

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Quantitative phosphoproteomic analysis of soybean root hairs inoculated with Bradyrhizobium japonicum. Nguyen THN, Brechenmacher L, Aldrich JT, Clauss TR, Gritsenko MA, Hixson KK, Libault M, Tanaka K, Yang F, Yao Q, Paša-Tolić L, Xu D, Nguyen HT, Stacey G. Molecular and Cellular Proteomics; 11(11):1140-1155.

Date published: November 1, 2012
Featured in this article: Dong Xu, Gary Stacey.

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Identification of soybean proteins from a single cell type: The root hair. Brechenmacher L, Nguyen THN, Hixson K, Libault M, Aldrich J, Pasa-Tolic L, Stacey G. Proteomics; 12(22):3365-3373.

Date published: November 1, 2012
Featured in this article: Gary Stacey.

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A role for RNA post-transcriptional regulation in satellite cell activation. Farina NH, Hausburg M, Betta ND, Pulliam C, Srivastava D, Cornelison DDW, Olwin BB. Skeletal Muscle; 2(1):21.

Date published: October 9, 2012
Featured in this article: D Cornelison.

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Root Secreted Metabolites and Proteins Are Involved in the Early Events of Plant-Plant Recognition Prior to Competition. Badri DV, de-la-Peña C, Lei Z, Manter DK, Chaparro JM, Guimarães RL, Sumner LW, Vivanco JM. PLoS ONE; 7(10):e46640.

Date published: October 2, 2012
Featured in this article: Zhentian Lei, Lloyd Sumner.

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SMN-inducing compounds for the treatment of spinal muscular atrophy. Lorson MA, Lorson CL. Future Medicinal Chemistry; 4(16):2067-2084.

Date published: October 1, 2012
Featured in this article: Monique Lorson, Christian Lorson.

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P2X7 receptor activation induces inflammatory responses in salivary gland epithelium. Woods LT, Camden JM, Batek JM, Petris MJ, Erb L, Weisman GA. American Journal of Physiology - Cell Physiology; 303(7):C790-C801.

Date published: October 1, 2012
Featured in this article: Lucas Woods, Jean Camden, Michael Petris, Gary Weisman.

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A fully resolved chloroplast phylogeny of the brassica crops and wild relatives (Brassicaceae: Brassiceae): Novel clades and potential taxonomic implications. Arias T, Chris Pires J. Taxon; 61(5):980-988.

Date published: October 1, 2012
Featured in this article: J. Chris Pires.

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Metabolic and evolutionary costs of herbivory defense: Systems biology of glucosinolate synthesis. Bekaert M, Edger PP, Hudson CM, Pires J, Conant GC. New Phytologist; 196(2):596-605.

Date published: October 1, 2012
Featured in this article: J. Chris Pires.

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Modulation of protein phosphorylation, N-glycosylationand Lys-acetylation in grape (Vitis vinifera) mesocarp and exocarp owing to Lobesia botrana infection. Melo-Braga MN, Verano-Braga T, León IR, Antonacci D, Nogueira FCS, Thelen JJ, Larsen MR, Palmisano G. Molecular and Cellular Proteomics; 11(10):945-956.

Date published: October 1, 2012
Featured in this article: Jay Thelen.

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Semi-automated tracking of muscle satellite cells in brightfield microscopy video. Chowdhury AS, Paul A, Bunyak F, Cornelison DDW, Palaniappan K. 2012 19th IEEE International Conference on Image Processing; 2012:2825-2828.

Date published: September 30, 2012
Featured in this article: D Cornelison.

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P³DB: An integrated database for plant protein phosphorylation. Yao Q, Bollinger C, Gao J, Xu D, Thelen JJ. Frontiers in Plant Science; 3(SEP):206.

Date published: September 7, 2012
Featured in this article: Dong Xu, Jay Thelen.

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Analysis of a read-through promoting compound in a severe mouse model of spinal muscular atrophy. Mattis VB, Tom Chang C-W, Lorson CL. Neuroscience Letters; 525(1):72-75.

Date published: September 6, 2012
Featured in this article: Christian Lorson.

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Determination of primary sequence specificity of Arabidopsis MAPKs MPK3 and MPK6 leads to identification of new substrates. Sörensson C, Lenman M, Veide-Vilg J, Schopper S, Ljungdahl T, Grøtli M, Tamás MJ, Peck SC, Andreasson E. Biochemical Journal; 446(2):271-278.

Date published: September 1, 2012
Featured in this article: Scott Peck.

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Severe acute respiratory syndrome coronavirus replication inhibitor that interferes with the nucleic acid unwinding of the viral helicase. Adedeji AO, Singh K, Calcaterra NE, DeDiego ML, Enjuanes L, Weiss S, Sarafianos SG. Antimicrobial Agents and Chemotherapy; 56(9):4718-4728.

Date published: September 1, 2012
Featured in this article: Kamlendra Singh.

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LYK4, a lysin motif receptor-like kinase, is important for chitin signaling and plant innate immunity in Arabidopsis. Wan J, Tanaka K, Zhang X-C, Son GH, Brechenmacher L, Nguyen THN, Stacey G. Plant Physiology; 160(1):396-406.

Date published: September 1, 2012
Featured in this article: Jinrong Wan, Gary Stacey.

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Reconstructing differentially co-expressed gene modules and regulatory networks of soybean cells. Zhu M, Deng X, Joshi T, Xu D, Stacey G, Cheng J. BMC Genomics; 13(1):437.

Date published: August 31, 2012
Featured in this article: Trupti Joshi, Dong Xu, Gary Stacey.

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Environmental effects on allergen levels in commercially grown non-genetically modified soybeans: Assessing variation across North America. Stevenson SE, Woods CA, Hong B, Kong X, Thelen JJ, Ladics GS. Frontiers in Plant Science; 3(AUG):196.

Date published: August 27, 2012
Featured in this article: Jay Thelen.

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HIV-1 reverse transcriptase (RT) polymorphism 172K suppresses the effect of clinically relevant drug resistance mutations to both nucleoside and non-nucleoside RT inhibitors. Hachiya A, Marchand B, Kirby KA, Michailidis E, Tu X, Palczewski K, Ong YT, Li Z, Griffin DT, Schuckmann MM, Tanuma J, Oka S, Singh K, Kodama EN, Sarafianos SG. Journal of Biological Chemistry; 287(35):29988-29999.

Date published: August 24, 2012
Featured in this article: Kamlendra Singh.

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Predicting and analyzing protein phosphorylation sites in plants using Musite. Yao Q, Gao J, Bollinger C, Thelen JJ, Xu D. Frontiers in Plant Science; 3(AUG):186.

Date published: August 21, 2012
Featured in this article: Jay Thelen, Dong Xu.

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Conditional knockout of the menkes disease copper transporter demonstrates its critical role in embryogenesis. Wang Y, Zhu S, Weisman GA, Gitlin JD, Petris MJ. PLoS ONE; 7(8):e43039.

Date published: August 10, 2012
Featured in this article: Gary Weisman, Michael Petris.

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A small ribozyme with dual-site kinase activity. Biondi E, Maxwell AWR, Burke DH. Nucleic Acids Research; 40(15):7528-7540.

Date published: August 1, 2012
Featured in this article: Donald Burke-Agüero.

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“Scanning mutagenesis” of the amino acid sequences flanking phosphorylation site 1 of the mitochondrial pyruvate dehydrogenase complex. Ahsan N, Swatek KN, Zhang J, Miernyk JA, Xu D, Thelen JJ. Frontiers in Plant Science; 3(JUL):153.

Date published: July 16, 2012
Featured in this article: Dong Xu, Jay Thelen.

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Effector-triggered immunity signaling: From gene-for-gene pathways to protein-protein interaction networks. Gassmann W, Bhattacharjee S. Molecular Plant-Microbe Interactions; 25(7):862-868.

Date published: July 1, 2012
Featured in this article: Walter Gassmann.

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Large-scale proteome comparative analysis of developing rhizomes of the ancient vascular plant Equisetum hyemale. Balbuena TS, He R, Salvato F, Gang DR, Thelen JJ. Frontiers in Plant Science; 3(JUN):131.

Date published: June 26, 2012
Featured in this article: Jay Thelen.

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Current cell models for bioengineering a salivary gland: A mini-review of emerging technologies. Nelson J, Manzella K, Baker OJ. Oral Diseases; 19(3):236-244.

Date published: June 18, 2012
Featured in this article: Olga Baker.

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Deciphering energy-associated gene networks operating in the response of Arabidopsis plants to stress and nutritional cues. Avin-Wittenberg T, Tzin V, Angelovici R, Less H, Galili G. Plant Journal; 70(6):954-966.

Date published: June 1, 2012
Featured in this article: Ruthie Angelovici.

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Feedback inhibition by thiols outranks glutathione depletion: A luciferase-based screen reveals glutathione-deficient γ-ECS and glutathione synthetase mutants impaired in cadmium-induced sulfate assimilation. Jobe TO, Sung D-Y, Akmakjian G, Pham A, Komives EA, Mendoza-Cózatl DG, Schroeder JI. Plant Journal; 70(5):783-795.

Date published: June 1, 2012
Featured in this article: David Mendoza-Cózatl.

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Seed colour loci, homoeology and linkage groups of the C genome chromosomes revealed in Brassica rapaB. oleracea monosomic alien addition lines. Heneen WK, Geleta M, Brismar K, Xiong Z, Pires JC, Hasterok R, Stoute AI, Scott RJ, King GJ, Kurup S. Annals of Botany; 109(7):1227-1242.

Date published: June 1, 2012
Featured in this article: J. Chris Pires.

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Allopolyploidization lays the foundation for evolution of distinct populations: Evidence from analysis of synthetic arabidopsis allohexaploids. Matsushita SC, Tyagi AP, Thornton GM, Pires JC, Madlung A. Genetics; 191(2):535-547.

Date published: June 1, 2012
Featured in this article: J. Chris Pires.

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MET-IDEA version 2.06; improved efficiency and additional functions for mass spectrometry-based metabolomics data processing. Lei Z, Li H, Chang J, Zhao PX, Sumner LW. Metabolomics; 8:105-110.

Date published: June 1, 2012
Featured in this article: Zhentian Lei, Lloyd Sumner.

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The proteomic future: Where mass spectrometry should be taking us. Thelen JJ, Miernyk JA. Biochemical Journal; 444(2):169-181.

Date published: June 1, 2012
Featured in this article: Jay Thelen.

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The absence of heat shock protein HSP101 affects the proteome of mature and germinating maize embryos. Lázaro-Mixteco PE, Nieto-Sotelo J, Swatek KN, Houston NL, Mendoza-Hernández G, Thelen JJ, Dinkova TD. Journal of Proteome Research; 11(6):3246-3258.

Date published: June 1, 2012
Featured in this article: Jay Thelen.

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Escape from preferential retention following repeated whole genome duplications in plants. Schnable JC, Wang X, Pires JC, Freeling M. Frontiers in Plant Science; 3(MAY):94.

Date published: May 15, 2012
Featured in this article: J. Chris Pires.

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Long identical multispecies elements in plant and animal genomes. Reneker J, Lyons E, Conant GC, Pires JC, Freeling M, Shyu C-R, Korkin D. Proceedings of the National Academy of Sciences of the United States of America; 109(19):E1183-E1191.

Date published: May 8, 2012
Featured in this article: J. Chris Pires.

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Resolvin D1 prevents TNF-α-mediated disruption of salivary epithelial formation. Odusanwo O, Chinthamani S, McCall A, Duffey ME, Baker OJ. American Journal of Physiology - Cell Physiology; 302(9):C1331-C1345.

Date published: May 1, 2012
Featured in this article: Olga Baker.

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Partial restoration of cardio-vascular defects in a rescued severe model of spinal muscular atrophy. Shababi M, Habibi J, Ma L, Glascock JJ, Sowers JR, Lorson CL. Journal of Molecular and Cellular Cardiology; 52(5):1074-1082.

Date published: May 1, 2012
Featured in this article: Christian Lorson.

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Characterization of Arabidopsis NEET reveals an ancient role for NEET proteins in iron metabolism. Nechushtai R, Conlan AR, Harir Y, Song L, Yogev O, Eisenberg-Domovich Y, Livnah O, Michaeli D, Rosen R, Ma V, Luo Y, Zuris JA, Paddock ML, Cabantchik ZI, Jennings PA, Mittler R. Plant Cell; 24(5):2139-2154.

Date published: May 1, 2012
Featured in this article: Ron Mittler.

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Phylogeny of the Asparagales based on three plastid and two mitochondrial genes. Seberg O, Petersen G, Davis JI, Chris Pires J, Stevenson DW, Chase MW, Fay MF, Devey DS, Jørgensen T, Sytsma KJ, Pillon Y. American Journal of Botany; 99(5):875-889.

Date published: May 1, 2012
Featured in this article: J. Chris Pires.

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Characterization of an isoflavonoid-specific prenyltransferase from Lupinus albus. Shen G, Huhman D, Lei Z, Snyder J, Sumner LW, Dixon RA. Plant Physiology; 159(1):70-80.

Date published: May 1, 2012
Featured in this article: Zhentian Lei, Lloyd Sumner.

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Phosphoproteomic analysis of seed maturation in arabidopsis, rapeseed, and soybean. Meyer LJ, Gao J, Xu D, Thelen JJ. Plant Physiology; 159(1):517-528.

Date published: May 1, 2012
Featured in this article: Dong Xu, Jay Thelen.

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Copper homeostasis at the host-pathogen interface. Hodgkinson V, Petris MJ. Journal of Biological Chemistry; 287(17):13549-13555.

Date published: April 20, 2012
Featured in this article: Michael Petris.

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Separating and analyzing sulfur-containing rnas with organomercury gels. Biondi E, Burke DH. Methods in Molecular Biology; 883:111-120.

Date published: April 6, 2012
Featured in this article: Donald Burke-Agüero.

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Lipoxin A 4 inhibits immune cell binding to salivary epithelium and vascular endothelium. Chinthamani S, Odusanwo O, Mondal N, Nelson J, Neelamegham S, Baker OJ. American Journal of Physiology - Cell Physiology; 302(7):C968-C978.

Date published: April 1, 2012
Featured in this article: Olga Baker.

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CRM1-dependent trafficking of retroviral Gag proteins Revisited. Baluyot MF, Grosse SA, Lyddon TD, Janaka SK, Johnson MC. Journal of Virology; 86(8):4696-4700.

Date published: April 1, 2012
Featured in this article: Terri Lyddon, Marc Johnson.

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Nucleotides released from Aβ 1-42-treated microglial cells increase cell migration and Aβ 1-42 uptake through P2Y 2 receptor activation. Kim HJ, Ajit D, Peterson TS, Wang Y, Camden JM, Wood WG, Sun GY, Erb L, Petris M, Weisman GA. Journal of Neurochemistry; 121(2):228-238.

Date published: April 1, 2012
Featured in this article: Jean Camden, Michael Petris, Gary Weisman.

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Altered patterns of fractionation and exon deletions in Brassica rapa support a two-step model of paleohexaploidy. Tang H, Woodhouse MR, Cheng F, Schnable JC, Pedersen BS, Conant G, Wang X, Freeling M, Pires JC. Genetics; 190(4):1563-1574.

Date published: April 1, 2012
Featured in this article: J. Chris Pires.

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Getting up to speed. Van de Peer Y, Pires JC. Current Opinion in Plant Biology; 15(2):111-114.

Date published: April 1, 2012
Featured in this article: J. Chris Pires.

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Structural and inhibition studies of the RNase H function of xenotropic murine leukemia virus-related virus reverse transcriptase. Kirby KA, Marchand B, Ong YT, Ndongwe TP, Hachiya A, Michailidis E, Leslie MD, Sietsema DV, Fetterly TL, Dorst CA, Singh K, Wang Z, Parniak MA, Sarafianos SG. Antimicrobial Agents and Chemotherapy; 56(4):2048-2061.

Date published: April 1, 2012
Featured in this article: Kamlendra Singh.

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Expression of a bacterial feedback-insensitive 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase of the shikimate pathway in Arabidopsis elucidates potential metabolic bottlenecks between primary and secondary metabolism. Tzin V, Malitsky S, Zvi MMB, Bedair M, Sumner L, Aharoni A, Galili G. New Phytologist; 194(2):430-439.

Date published: April 1, 2012
Featured in this article: Lloyd Sumner.

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Gold Nanoparticle-Mediated Detection of Circulating Cancer Cells. Bhattacharyya K, Goldschmidt BS, Hannink M, Alexander S, Jurkevich A, Viator JA. Clinics in Laboratory Medicine; 32(1):89-101.

Date published: March 1, 2012
Featured in this article: Mark Hannink, Alexander Jurkevich.

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Transgenic inactivation of murine myostatin does not decrease the severity of disease in a model of Spinal Muscular Atrophy. Rindt H, Buckley DM, Vale SM, Krogman M, Rose FF, Garcia ML, Lorson CL. Neuromuscular Disorders; 22(3):277-285.

Date published: March 1, 2012
Featured in this article: Christian Lorson.

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Decreasing disease severity in symptomatic, Smn-/-;SMN2 ++, spinal muscular atrophy mice following scAAV9-SMN delivery. Glascock JJ, Osman EY, Wetz MJ, Krogman MM, Shababi M, Lorson CL. Human Gene Therapy; 23(3):330-335.

Date published: March 1, 2012
Featured in this article: Christian Lorson.

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Optimization of SMN trans-splicing through the analysis of SMN introns. Shababi M, Lorson CL. Journal of Molecular Neuroscience; 46(3):459-469.

Date published: March 1, 2012
Featured in this article: Christian Lorson.

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How do plants feel the heat?. Mittler R, Finka A, Goloubinoff P. Trends in Biochemical Sciences; 37(3):118-125.

Date published: March 1, 2012
Featured in this article: Ron Mittler.

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Mechanism of interaction of human mitochondrial DNA polymerase γ with the novel nucleoside reverse transcriptase inhibitor 4′-ethynyl-2-fluoro- 2′-deoxyadenosine indicates a low potential for host toxicity. Sohl CD, Singh K, Kasiviswanathan R, Copeland WC, Mitsuya H, Sarafianos SG, Anderson KS. Antimicrobial Agents and Chemotherapy; 56(3):1630-1634.

Date published: March 1, 2012
Featured in this article: Kamlendra Singh.

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Integration of the draft sequence and physical map as a framework for genomic research in soybean (glycine max (l.) merr.) and wild soybean (glycine soja sieb. and zucc.). Ha J, Abernathy B, Nelson W, Grant D, Wu X, Nguyen HT, Stacey G, Yu Y, Wing RA, Shoemaker RC, Jackson SA. G3: Genes, Genomes, Genetics; 2(3):321-329.

Date published: March 1, 2012
Featured in this article: Gary Stacey.

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Metabolomics as a hypothesis-generating functional genomics tool for the annotation of Arabidopsis thaliana genes of “unknown function”. Quanbeck SM, Brachova L, Campbell AA, Guan X, Perera A, He K, Rhee SY, Bias P, Dickerson JA, Dixon P, Wohlgemuth G, Fiehn O, Barkan L, Lange I, Markus Lange B, Lee I, Cortes D, Salazar C, Shuman J, Shulaev V, Huhman DV, Sumner LW, Roth MR, Welti R, Ilarslan H, Wurtele ES, Nikolau BJ. Frontiers in Plant Science; 3(FEB):15.

Date published: February 10, 2012
Featured in this article: Lloyd Sumner.

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Cell-penetrating RNAs: New keys to the castle. Burke DH. Molecular Therapy; 20(2):251-253.

Date published: February 1, 2012
Featured in this article: Donald Burke-Agüero.

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Hormone signaling in plant development. Durbak A, Yao H, McSteen P. Current Opinion in Plant Biology; 15(1):92-96.

Date published: February 1, 2012
Featured in this article: Paula McSteen.

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ROS and redox signalling in the response of plants to abiotic stress. Suzuki N, Koussevitzky S, Mittler R, Miller G. Plant, Cell and Environment; 35(2):259-270.

Date published: February 1, 2012
Featured in this article: Ron Mittler.

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Phylogenomic analysis of transcriptome data elucidates co-occurrence of a paleopolyploid event and the origin of bimodal karyotypes in Agavoideae (Asparagaceae). McKain MR, Wickett N, Zhang Y, Ayyampalayam S, Richard McCombie W, Chase MW, Chris Pires J, DePamphilis CW, Leebens-Mack J. American Journal of Botany; 99(2):397-406.

Date published: February 1, 2012
Featured in this article: J. Chris Pires.

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Quality and quantity of data recovered from massively parallel sequencing: Examples in asparagales and Poaceae. Roxanne Steele P, Hertweck KL, Mayfield D, McKain MR, Leebens-Mack J, Chris Pires J. American Journal of Botany; 99(2):330-348.

Date published: February 1, 2012
Featured in this article: J. Chris Pires.

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Nucleotide polymorphism in the 5.8S nrDNA gene and internal transcribed spacers in Phakopsora pachyrhizi viewed from structural models. Freire MCM, Silva MRD, Zhang X, Almeida ÁMR, Stacey G, Oliveira LOD. Fungal Genetics and Biology; 49(2):95-100.

Date published: February 1, 2012
Featured in this article: Gary Stacey.

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Next-generation sequencing-based transcriptomic and proteomic analysis of the common reed, Phragmites australis (Poaceae), reveals genes involved in invasiveness and rhizome specificity. He R, Kim M-J, Nelson W, Balbuena TS, Kim R, Kramer R, Crow JA, May GD, Thelen JJ, Soderlund CA, Gang DR. American Journal of Botany; 99(2):232-247.

Date published: February 1, 2012
Featured in this article: Jay Thelen.

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A genome triplication associated with early diversification of the core eudicots. Jiao Y, Leebens-Mack J, Ayyampalayam S, Bowers JE, McKain MR, McNeal J, Rolf M, Ruzicka DR, Wafula E, Wickett NJ, Wu X, Zhang Y, Wang J, Zhang Y, Carpenter EJ, Deyholos MK, Kutchan TM, Chanderbali AS, Soltis PS, Stevenson DW, McCombie R, Pires JC, Wong GK-S, Soltis DE, dePamphilis CW. Genome Biology; 13(1):R3.

Date published: January 26, 2012
Featured in this article: J. Chris Pires.

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Soybean knowledge base (SoyKB): A web resource for soybean translational genomics. Joshi T, Patil K, Fitzpatrick MR, Franklin LD, Yao Q, Cook JR, Wang Z, Libault M, Brechenmacher L, Valliyodan B, Wu X, Cheng J, Stacey G, Nguyen HT, Xu D. Series on Advances in Bioinformatics and Computational Biology; 13:S15.

Date published: January 17, 2012
Featured in this article: Trupti Joshi, Gary Stacey, Dong Xu.

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Direct central nervous system delivery provides enhanced protection following vector mediated gene replacement in a severe model of Spinal Muscular Atrophy. Glascock JJ, Shababi M, Wetz MJ, Krogman MM, Lorson CL. Biochemical and Biophysical Research Communications; 417(1):376-381.

Date published: January 6, 2012
Featured in this article: Christian Lorson.

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Biochemical, inhibition and inhibitor resistance studies of xenotropic murine leukemia virus-related virus reverse transcriptase. Ndongwe TP, Adedeji AO, Michailidis E, Ong YT, Hachiya A, Marchand B, Ryan EM, Rai DK, Kirby KA, Whatley AS, Burke DH, Johnson M, Ding S, Zheng Y-M, Liu S-L, Kodama E-I, Delviks-Frankenberry KA, Pathak VK, Mitsuya H, Parniak MA, Singh K, Sarafianos SG. Nucleic Acids Research; 40(1):345-359.

Date published: January 1, 2012
Featured in this article: Donald Burke-Agüero, Marc Johnson, Kamlendra Singh.

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Bifunctional RNAs targeting the intronic splicing silencer N1 increase SMN levels and reduce disease severity in an animal model of spinal muscular atrophy. Osman EY, Yen P-F, Lorson CL. Molecular Therapy; 20(1):119-126.

Date published: January 1, 2012
Featured in this article: Christian Lorson.

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Multitasking in the mitochondrion by the ATP-dependent Lon protease. Venkatesh S, Lee J, Singh K, Lee I, Suzuki CK. Biochimica et Biophysica Acta - Molecular Cell Research; 1823(1):56-66.

Date published: January 1, 2012
Featured in this article: Kamlendra Singh.

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Mechanism of nucleic acid unwinding by SARS-CoV helicase. Adedeji AO, Marchand B, Te Velthuis AJ, Snijder EJ, Weiss S, Eoff RL, Singh K, Sarafianos SG. PLoS ONE; 7(5):e36521.

Date published: January 1, 2012
Featured in this article: Kamlendra Singh.

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Characterization of catalytic carboxylate triad in non-replicative DNA polymerase III (pol E) of Geobacillus kaustophilus HTA. Sandalli C, Singh K, Modak MJ. Cellular and Molecular Biology; 58(1):44-49.

Date published: January 1, 2012
Featured in this article: Kamlendra Singh.

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Inhibition of P. Falciparum PfATP6 by curcumin and its derivatives: A bioinformatic study. Shukla A, Singh A, Pathak LP, Shrivastava N, Tripathi PK, Singh MP, Singh K. Cellular and Molecular Biology; 58(1):182-186.

Date published: January 1, 2012
Featured in this article: Kamlendra Singh.

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Preparation of biologically active single-chain variable antibody fragments that target the HIV-1 GP120 V3 loop. Ong YT, Kirby KA, Hachiya A, Chiang LA, Marchand B, Yoshimura K, Murakami T, Singh K, Matsushita S, Sarafianos SG. Cellular and Molecular Biology; 58(1):71-79.

Date published: January 1, 2012
Featured in this article: Kamlendra Singh.

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Structural and biochemical basis for the difference in the helicase activity of two different constructs of sars-cov helicase. Adedeji AO, Singh K, Sarafianos SG. Cellular and Molecular Biology; 58(1):115-121.

Date published: January 1, 2012
Featured in this article: Kamlendra Singh.

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Effect of translocation defective reverse transcriptase inhibitors on the activity of n348i, A connection subdomain drug resistant HIV-1 reverse transcriptase mutant. Michailidis E, Singh K, Ryan EM, Hachiya A, Ong YT, Kirby KA, Marchand B, Kodama EN, Mitsuya H, Parniak MA, Sarafianos SG. Cellular and Molecular Biology; 58(1):187-195.

Date published: January 1, 2012
Featured in this article: Kamlendra Singh.

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Ethylene-responsive element-binding factor 5, ERF5, is involved in chitin-induced innate immunity response. Son GH, Wan J, Kim HJ, Nguyen XC, Chung WS, Hong JC, Stacey G. Molecular Plant-Microbe Interactions; 25(1):48-60.

Date published: January 1, 2012
Featured in this article: Gary Stacey.

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Evolutionary dynamics of protein domain architecture in plants. Zhang X-C, Wang Z, Zhang X, Le MH, Sun J, Xu D, Cheng J, Stacey G. BMC Evolutionary Biology; 12(1):6.

Date published: January 1, 2012
Featured in this article: Dong Xu, Gary Stacey.

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Genetic diversity and origins of Phakopsora pachyrhizi isolates in the United States. Zhang XC, Freire MCM, Le MH, De Oliveira LO, Pitkin JW, Segers G, Concibido VC, Baley GJ, Hartman GL, Upchurch G, Pedley KF, Stacey G. Asian Journal of Plant Pathology; 6(3):52-65.

Date published: January 1, 2012
Featured in this article: Gary Stacey.

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KiC Assay: A quantitative mass spectrometry-based approach. Huang Y, Thelen JJ. Methods in Molecular Biology; 893:359-370.

Date published: January 1, 2012
Featured in this article: Jay Thelen.

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Erratum: KiC assay: A quantitative mass spectrometry-based approach for kinase client screening and activity analysis (Methods in Molecular Biology 893 (359-370) DOI: 10.1007/978-1-61779-885-6-22). Huang Y, Thelen JJ. Methods in Molecular Biology; 893:E1.

Date published: January 1, 2012
Featured in this article: Jay Thelen.

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2011

Eph/ephrin interactions modulate muscle satellite cell motility and patterning. Stark DA, Karvas RM, Siege AL, Cornelison DDW. Development; 138(24):5279-5289.

Date published: December 15, 2011
Featured in this article: D Cornelison.

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Pathogen effectors target Arabidopsis EDS1 and alter its interactions with immune regulators. Bhattacharjee S, Halane MK, Kim SH, Gassmann W. Science; 334(6061):1405-1408.

Date published: December 9, 2011
Featured in this article: Walter Gassmann.

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Suppression of phospholipase Dγs confers increased aluminum resistance in Arabidopsis thaliana. Zhao J, Wang C, Bedair M, Welti R, Sumner L, Baxter I, Wang X. PLoS ONE; 6(12):e28086.

Date published: December 7, 2011
Featured in this article: Lloyd Sumner.

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CD34 promotes satellite cell motility and entry into proliferation to facilitate efficient skeletal muscle regeneration. Alfaro LAS, Dick SA, Siegel AL, Anonuevo AS, McNagny KM, Megeney LA, Cornelison DDW, Rossi FMV. Stem Cells; 29(12):2030-2041.

Date published: December 1, 2011
Featured in this article: D Cornelison.

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Modulation of phototropic responsiveness in arabidopsis through ubiquitination of phototropin 1 by the CUL3-ring E3 ubiquitin ligase CRL3 NPH3. Roberts D, Pedmale UV, Morrow J, Sachdev S, Lechner E, Tang X, Zheng N, Hannink M, Genschik P, Liscum E. Plant Cell; 23(10):3627-3640.

Date published: December 1, 2011
Featured in this article: Shrikesh C. "Rick" Sachdev, Mark Hannink.

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Disruption of the Survival Motor Neuron (SMN) gene in pigs using ssDNA. Lorson MA, Spate LD, Samuel MS, Murphy CN, Lorson CL, Prather RS, Wells KD. Transgenic Research; 20(6):1293-1304.

Date published: December 1, 2011
Featured in this article: Monique Lorson, Christian Lorson.

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Respiratory burst oxidases: The engines of ROS signaling. Suzuki N, Miller G, Morales J, Shulaev V, Torres MA, Mittler R. Current Opinion in Plant Biology; 14(6):691-699.

Date published: December 1, 2011
Featured in this article: Ron Mittler.

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Identification of quantitative trait loci controlling gene expression during the innate immunity response of soybean. Valdés-López O, Thibivilliers S, Qiu J, Xu WW, Nguyen THN, Libault M, Le BH, Goldberg RB, Hill CB, Hartman GL, Diers B, Stacey G. Plant Physiology; 157(4):1975-1986.

Date published: December 1, 2011
Featured in this article: Gary Stacey.

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MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs. Zhai J, Jeong D-H, de Paoli E, Park S, Rosen BD, Li Y, González AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC. Genes and Development; 25(23):2540-2553.

Date published: December 1, 2011
Featured in this article: Gary Stacey.

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The main auxin biosynthesis pathway in Arabidopsis. Mashiguchi K, Tanaka K, Sakai T, Sugawara S, Kawaide H, Natsume M, Hanada A, Yaeno T, Shirasu K, Yao H, McSteen P, Zhao Y, Hayashi K-I, Kamiya Y, Kasahara H. Proceedings of the National Academy of Sciences of the United States of America; 108(45):18512-18517.

Date published: November 8, 2011
Featured in this article: Paula McSteen.

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Selection for higher gene copy number after different types of plant gene duplications. Hudson CM, Puckett EE, Bekaert M, Pires JC, Conant GC. Genome Biology and Evolution; 3(1):1369-1380.

Date published: November 4, 2011
Featured in this article: J. Chris Pires.

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Targeted enhancement of glutamate-to-γ-aminobutyrate conversion in Arabidopsis seeds affects carbon-nitrogen balance and storage reserves in a development-dependent manner. Fait A, Nesi AN, Angelovici R, Lehmann M, Pham PA, Song L, Haslam RP, Napier JA, Galili G, Fernie AR. Plant Physiology; 157(3)1026-1042.

Date published: November 1, 2011
Featured in this article: Ruthie Angelovici.

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Sequences in gibbon ape leukemia virus envelope that confer sensitivity to HIV-1 accessory protein Vpu. Janaka SK, Lucas TM, Johnson MC. Journal of Virology; 85(22):11945-11954.

Date published: November 1, 2011
Featured in this article: Marc Johnson.

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Activity-based metagenomic screening and biochemical characterization of bovine ruminal protozoan glycoside hydrolases. Findley SD, Mormile MR, Sommer-Hurley A, Zhang X-C, Tipton P, Arnett K, Porter JH, Kerley M, Stacey G. Applied and Environmental Microbiology; 77(22):8106-8113.

Date published: November 1, 2011
Featured in this article: Gary Stacey.

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Mapping the lipoylation site of Arabidopsis thaliana plastidial dihydrolipoamide S-acetyltransferase using mass spectrometry and site-directed mutagenesis. Casteel J, Miernyk JA, Thelen JJ. Plant Physiology and Biochemistry; 49(11):1355-1361.

Date published: November 1, 2011
Featured in this article: Jay Thelen.

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Genomically biased accumulation of seed storage proteins in allopolyploid cotton. Hu G, Houston NL, Pathak D, Schmidt L, Thelen JJ, Wendel JF. Genetics; 189(3):1103-1115.

Date published: November 1, 2011
Featured in this article: Jay Thelen.

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Broad-spectrum aptamer inhibitors of HIV reverse transcriptase closely mimic natural substrates. Ditzler MA, Bose D, Shkriabai N, Marchand B, Sarafianos SG, Kvaratskhelia M, Burke DH. Nucleic Acids Research; 39(18):8237-8247.

Date published: October 1, 2011
Featured in this article: Donald Burke-Agüero.

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Delivery of therapeutic agents through intracerebroventricular (ICV) and intravenous (IV) injection in mice. Glascock JJ, Osman EY, Coady TH, Rose FF, Shababi M, Lorson CL. Journal of Visualized Experiments; 56:e2968.

Date published: October 1, 2011
Featured in this article: Christian Lorson.

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Long-distance transport, vacuolar sequestration, tolerance, and transcriptional responses induced by cadmium and arsenic. Mendoza-Cózatl DG, Jobe TO, Hauser F, Schroeder JI. Current Opinion in Plant Biology; 14(5):554-562.

Date published: October 1, 2011
Featured in this article: David Mendoza-Cózatl.

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De novo genetic variation associated with retrotransposon activation, genomic rearrangements and trait variation in a recombinant inbred line population of Brassica napus derived from interspecific hybridization with Brassica rapa. Zou J, Fu D, Gong H, Qian W, Xia W, Pires JC, Li R, Long Y, Mason AS, Yang T-J, Lim YP, Park BS, Meng J. Plant Journal; 68(2):212-224.

Date published: October 1, 2011
Featured in this article: J. Chris Pires.

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The genome of the mesopolyploid crop species Brassica rapa. Wang X, Wang H, Wang J, Sun R, Wu J, Liu S, Bai Y, Mun J-H, Bancroft I, Cheng F, Huang S, Li X, Hua W, Wang J, Wang X, Freeling M, Pires JC, Paterson AH, Chalhoub B, Wang B, Hayward A, Sharpe AG, Park B-S, Weisshaar B, Liu B, Li B, Liu B, Tong C, Song C, Duran C, Peng C, Geng C, Koh C, Lin C, Edwards D, Mu D, Shen D, Soumpourou E, Li F, Fraser F, Conant G, Lassalle G, King GJ, Bonnema G, Tang H, Wang H, Belcram H, Zhou H, Hirakawa H, Abe H, Guo H, Wang H, Jin H, Parkin IAP, Batley J, Kim J-S, Just J, Li J, Xu J, Deng J, Kim JA, Li J, Yu J, Meng J, Wang J, Min J, Poulain J, Hatakeyama K, Wu K, Wang L, Fang L, Trick M, Links MG, Zhao M, Jin M, Ramchiary N, Drou N, Berkman PJ, Cai Q, Huang Q, Li R, Tabata S, Cheng S, Zhang S, Zhang S, Huang S, Sato S, Sun S, Kwon S-J, Choi S-R, Lee T-H, Fan W, Zhao X, Tan X, Xu X, Wang Y, Qiu Y, Yin Y, Li Y, Du Y, Liao Y, Lim Y, Narusaka Y, Wang Y, Wang Z, Li Z, Wang Z, Xiong Z, Zhang Z. Nature Genetics; 43(10):1035-1040.

Date published: October 1, 2011
Featured in this article: J. Chris Pires.

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Targeted bisulfite sequencing by solution hybrid selection and massively parallel sequencing. Lee E-J, Pei L, Srivastava G, Joshi T, Kushwaha G, Choi J-H, Robertson KD, Wang X, Colbourne JK, Zhang L, Schroth GP, Xu D, Zhang K, Shi H. Nucleic Acids Research; 39(19).

Date published: October 1, 2011
Featured in this article: Trupti Joshi, Dong Xu.

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A large-scale genetic screen in Arabidopsis to identify genes involved in pollen exine production. Dobritsa AA, Geanconteri A, Shrestha J, Carlson A, Kooyers N, Coerper D, Urbanczyk-Wochniak E, Bench BJ, Sumner LW, Swanson R, Preuss D. Plant Physiology; 157(2):947-970.

Date published: October 1, 2011
Featured in this article: Lloyd Sumner.

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A lysozyme with antifungal activity from Pithecellobium dulce seeds. Sawasdipuksa N, Lei Z, Sumner LW, Niyomploy P, Sangvanicha P. Food Technology and Biotechnology; 49(4):489-494.

Date published: October 1, 2011
Featured in this article: Zhentian Lei, Lloyd Sumner.

A physical map of Brassica oleracea shows complexity of chromosomal changes following recursive paleopolyploidizations. Wang X, Torres MJ, Pierce G, Lemke C, Nelson LK, Yuksel B, Bowers JE, Marler B, Xiao Y, Lin L, Epps E, Sarazen H, Rogers C, Karunakaran S, Ingles J, Giattina E, Mun J-H, Seol Y-J, Park B-S, Amasino RM, Quiros CF, Osborn TC, Pires JC, Town C, Paterson AH. BMC Genomics; 12:470.

Date published: September 28, 2011
Featured in this article: J. Chris Pires.

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Bacterial outer membrane channel for divalent metal ion acquisition. Hohle TH, Franck WL, Stacey G, O'Brian MR. Proceedings of the National Academy of Sciences of the United States of America; 108(37):15390-15395.

Date published: September 13, 2011
Featured in this article: Gary Stacey.

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The 14-3-3 isoforms chi and epsilon differentially bind client proteins from developing Arabidopsis seed. Swatek KN, Graham K, Agrawal GK, Thelen JJ. Journal of Proteome Research; 10(9):4076-4087.

Date published: September 2, 2011
Featured in this article: Jay Thelen.

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A friend in need is a friend: Indeed understanding stress-associated transcriptional networks of plant metabolism using cliques of coordinately expressed genes. Avin-Wittenberg T, Tzin V, Less H, Angelovici R, Galili G. Plant Signaling and Behavior; 6(9):1294-1296.

Date published: September 1, 2011
Featured in this article: Ruthie Angelovici.

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Conformational heterogeneity and the determinants of tertiary stabilization in the hammerhead ribozyme from Dolichopoda cave crickets. Roychowdhury-Saha M, Roychowdhury S, Burke DH. RNA Biology; 8(5).

Date published: September 1, 2011
Featured in this article: Donald Burke-Agüero.

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The spinal muscular atrophy mouse model, SMAΔ7, displays altered axonal transport without global neurofilament alterations. Dale JM, Shen H, Barry DM, Garcia VB, Rose FF Jr, Lorson CL, Garcia ML. Acta Neuropathologica; 122(3):331-341.

Date published: September 1, 2011
Featured in this article: Hai Lian Shen, Christian Lorson.

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Are all sex chromosomes created equal?. Bachtrog D, Kirkpatrick M, Mank JE, McDaniel SF, Pires JC, Rice WR, Valenzuela N. Trends in Genetics; 27(9):350-357.

Date published: September 1, 2011
Featured in this article: J. Chris Pires.

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Exploring the complexity of tree thinking expertise in an undergraduate systematics course. Halverson KL, Pires CJ, Abell SK. Science Education; 95(5):794-823.

Date published: September 1, 2011
Featured in this article: J. Chris Pires.

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A Dual-targeted soybean protein is involved in Bradyrhizobium japonicum infection of soybean root hair and cortical cells. Libault M, Govindarajulu M, Berg RH, Ong YT, Puricelli K, Taylor CG, Xu D, Stacey G. Molecular Plant-Microbe Interactions; 24(9):1051-1060.

Date published: September 1, 2011
Featured in this article: Dong Xu, Gary Stacey.

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Facile transfer of [2Fe-2S] clusters from the diabetes drug target mitoNEET to an apo-acceptor protein. Zuris JA, Harir Y, Conlan AR, Shvartsman M, Michaeli D, Tamir S, Paddock ML, Onuchic JN, Mittler R, Cabantchik ZI, Jennings PA, Nechushtai R. Proceedings of the National Academy of Sciences of the United States of America; 108(32):13047-13052.

Date published: August 9, 2011
Featured in this article: Ron Mittler.

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Phosphoproteome analysis of Lotus japonicus roots reveals shared and distinct components of symbiosis and defense. Serna-Sanz A, Parniske M, Peck SC. Molecular Plant-Microbe Interactions; 24(8):932-937.

Date published: August 1, 2011
Featured in this article: Scott Peck.

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Methyl jasmonate induces ATP biosynthesis deficiency and accumulation of proteins related to secondary metabolism in Catharanthus roseus (L.) G. Hairy Roots. Ruiz-May E, De-La-Peña C, Galaz-Ávalos RM, Lei Z, Watson BS, Sumner LW, Loyola-Vargas VM. Plant and Cell Physiology; 52(8):1401-1421.

Date published: August 1, 2011
Featured in this article: Zhentian Lei, Lloyd Sumner.

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Plastid uridine salvage activity is required for photoassimilate allocation and partitioning in Arabidopsis. Chen M, Thelen JJ. Plant Cell; 23(8):2991-3006.

Date published: August 1, 2011
Featured in this article: Jay Thelen.

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Mass spectrometry strategies in metabolomics. Lei Z, Huhman DV, Sumner LW. Journal of Biological Chemistry; 286(29):25435-25442.

Date published: July 22, 2011
Featured in this article: Zhentian Lei, Lloyd Sumner.

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New mechanism of oral immunity to mucosal candidiasis in hyper-IgE syndrome. Conti HR, Baker O, Freeman AF, Jang WS, Holland SM, Li RA, Edgerton M, Gaffen SL. Mucosal Immunology; 4(4):448-455.

Date published: July 1, 2011
Featured in this article: Olga Baker.

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SMN in spinal muscular atrophy and snRNP biogenesis. Coady TH, Lorson CL. Wiley Interdisciplinary Reviews: RNA; 2(4):546-564.

Date published: July 1, 2011
Featured in this article: Christian Lorson.

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Arabidopsis MAP Kinase Phosphatase 1 (AtMKP1) negatively regulates MPK6-mediated PAMP responses and resistance against bacteria. Anderson JC, Bartels S, Besteiro MAG, Shahollari B, Ulm R, Peck SC. Plant Journal; 67(2):258-268.

Date published: July 1, 2011
Featured in this article: Scott Peck.

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Phenology-based assessment of perennial energy crops in North American tallgrass prairie. Wang C, Fritschi FB, Stacey G, Yang Z. Annals of the Association of American Geographers; 101(4):742-751.

Date published: July 1, 2011
Featured in this article: Gary Stacey.

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Fluorescence in situ hybridization-based karyotyping of soybean translocation lines. Findley SD, Pappas AL, Cui Y, Birchler JA, Palmer RJ, Stacey G. G3: Genes, Genomes, Genetics; 1(2):117-129.

Date published: July 1, 2011
Featured in this article: Yaya Cui, Gary Stacey.

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A legume specific protein database (LegProt) improves the number of identified peptides, confidence scores and overall protein identification success rates for legume proteomics. Lei Z, Dai X, Watson BS, Zhao PX, Sumner LW. Phytochemistry; 72(10):1020-1027.

Date published: July 1, 2011
Featured in this article: Zhentian Lei, Lloyd Sumner.

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Proteome analysis of leaves of the desiccation-tolerant grass, Sporobolus stapfianus, in response to dehydration. Oliver MJ, Jain R, Balbuena TS, Agrawal G, Gasulla F, Thelen JJ. Phytochemistry; 72(10):1273-1284.

Date published: July 1, 2011
Featured in this article: Jay Thelen.

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Clathrin facilitates the morphogenesis of retrovirus particles. Zhang F, Zang T, Wilson SJ, Johnson MC, Bieniasz PD. PLoS Pathogens; 7(6):e1002119.

Date published: June 1, 2011
Featured in this article: Marc Johnson.

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ROS signaling: The new wave?. Mittler R, Vanderauwera S, Suzuki N, Miller G, Tognetti VB, Vandepoele K, Gollery M, Shulaev V, Van Breusegem F. Trends in Plant Science; 16(6):300-309.

Date published: June 1, 2011
Featured in this article: Ron Mittler.

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Identification of the MBF1 heat-response regulon of Arabidopsis thaliana. Suzuki N, Sejima H, Tam R, Schlauch K, Mittler R. Plant Journal; 66(5):844-851.

Date published: June 1, 2011
Featured in this article: Ron Mittler.

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STENOFOLIA regulates blade outgrowth and leaf vascular patterning in medicago truncatula and nicotiana sylvestris. Tadege M, Lin H, Bedair M, Berbel A, Wen J, Rojas CM, Niu L, Tang Y, Sumner L, Ratet P, McHale NA, Madueño F, Mysore KS. Plant Cell; 23(6):2125-2142.

Date published: June 1, 2011
Featured in this article: Lloyd Sumner.

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A physical map for the Amborella trichopoda genome sheds light on the evolution of angiosperm genome structure. Zuccolo A, Bowers JE, Estill JC, Xiong Z, Luo M, Sebastian A, Goicoechea JL, Collura K, Yu Y, Jiao Y, Duarte J, Tang H, Ayyampalayam S, Rounsley S, Kudrna D, Paterson AH, Pires JC, Chanderbali A, Soltis DE, Chamala S, Barbazuk B, Soltis PS, Albert VA, Ma H, Mandoli D, Banks J, Carlson JE, Tomkins J, dePamphilis CW, Wing RA, Leebens-Mack J. Genome Biology; 12(5):R48.

Date published: May 27, 2011
Featured in this article: J. Chris Pires.

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Homoeologous shuffling and chromosome compensation maintain genome balance in resynthesized allopolyploid Brassica napus. Xiong Z, Gaeta RT, Pires JC. Proceedings of the National Academy of Sciences of the United States of America; 108(19):7908-7913.

Date published: May 10, 2011
Featured in this article: J. Chris Pires.

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Simplified enrichment of plasma membrane proteins for proteomic analyses in Arabidopsis thaliana. Zhang ZJ, Peck SC. Proteomics; 11(9):1780-1788.

Date published: May 9, 2011
Featured in this article: Scott Peck.

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Comparative proteomics of seed maturation in oilseeds reveals differences in intermediary metabolism. Hajduch M, Matusova R, Houston NL, Thelen JJ. Proteomics; 11(9):1619-1629.

Date published: May 9, 2011
Featured in this article: Jay Thelen.

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Proteomic comparison of plastids from developing embryos and leaves of Brassica napus. Demartini DR, Jain R, Agrawal G, Thelen JJ. Journal of Proteome Research; 10(5):2226-2237.

Date published: May 6, 2011
Featured in this article: Jay Thelen.

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Proteome analysis of cold acclimation in sunflower. Balbuena TS, Salas JJ, Martínez-Force E, Garcés R, Thelen JJ. Journal of Proteome Research; 10(5):2330-2346.

Date published: May 6, 2011
Featured in this article: Jay Thelen.

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The COPI vesicle complex binds and moves with survival motor neuron within axons. Peter CJ, Evans M, Thayanithy V, Taniguchi-Ishigaki N, Bach I, Kolpak A, Bassell GJ, Rossoll W, Lorson CL, Bao Z-Z, Androphy EJ. Human Molecular Genetics; 20(9):1701-1711.

Date published: May 1, 2011
Featured in this article: Christian Lorson.

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Two-phase resolution of polyploidy in the Arabidopsis metabolic network gives rise to relative and absolute dosage constraints. Bekaert M, Edger PP, Chris Pires J, Conant GC. Plant Cell; 23(5):1719-1728.

Date published: May 1, 2011
Featured in this article: J. Chris Pires.

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Phenotypic and genomic analyses of a fast neutron mutant population resource in soybean. Bolon Y-T, Haun WJ, Xu WW, Grant D, Stacey MG, Nelson RT, Gerhardt DJ, Jeddeloh JA, Stacey G, Muehlbauer GJ, Orf JH, Naeve SL, Stupar RM, Vance CP. Plant Physiology; 156(1):240-253.

Date published: May 1, 2011
Featured in this article: Minviluz (Bing) Stacey, Gary Stacey.

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Coordinated gene networks regulating Arabidopsis plant metabolism in response to various stresses and nutritional cues. Less H, Angelovici R, Tzin V, Galili G. Plant Cell; 23(4):1264-1271.

Date published: April 1, 2011
Featured in this article: Ruthie Angelovici.

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Muscle satellite cells from GRMD dystrophic dogs are not phenotypically distinguishable from wild type satellite cells in ex vivo culture. Berg Z, Beffa LR, Cook DP, Cornelison DDW. Neuromuscular Disorders; 21(4):282-290.

Date published: April 1, 2011
Featured in this article: D Cornelison.

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Epigenetic regulation of flowering time in polyploids. Mayfield D, Chen ZJ, Pires JC. Current Opinion in Plant Biology; 14(2):174-178.

Date published: April 1, 2011
Featured in this article: J. Chris Pires.

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Enzymatic activity of the soybean ecto-apyrase GS52 is essential for stimulation of nodulation. Tanaka K, Nguyen CT, Libault M, Cheng J, Stacey G. Plant Physiology; 155(4):1988-1998.

Date published: April 1, 2011
Featured in this article: Gary Stacey.

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MATE2 mediates vacuolar sequestration of flavonoid glycosides and glycoside malonates in Medicago truncatula. Zhao J, Huhman D, Shadle G, He X-Z, Sumner LW, Tang Y, Dixon RA. Plant Cell; 23(4):1536-1555.

Date published: April 1, 2011
Featured in this article: Lloyd Sumner.

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Differential proteome analysis of mature and germinated embryos of Araucaria angustifolia. Balbuena TS, Jo L, Pieruzzi FP, Dias LLC, Silveira V, Santa-Catarina C, Junqueira M, Thelen JJ, Shevchenko A, Floh EIS. Phytochemistry; 72(4-5):302-311.

Date published: April 1, 2011
Featured in this article: Jay Thelen.

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Spatially Resolved Plant Metabolomics. Sumner LW, Yang DS, Bench BJ, Watson BS, Li C, Daniel Jones A. Annual Plant Reviews Volume 43: Biology of Plant Metabolomics; 43:343-366.

Date published: March 17, 2011
Featured in this article: Lloyd Sumner.

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Mechanisms for env glycoprotein acquisition by retroviruses. Johnson MC. AIDS Research and Human Retroviruses; 27(3):239-247.

Date published: March 1, 2011
Featured in this article: Marc Johnson.

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Activation of the heat shock transcription factor Hsf1 is essential for the full virulence of the fungal pathogen Candida albicans. Nicholls S, MacCallum DM, Kaffarnik FAR, Selway L, Peck SC, Brown AJP. Fungal Genetics and Biology; 48(3):297-305.

Date published: March 1, 2011
Featured in this article: Scott Peck.

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Advances in the understanding of mammalian copper transporters. Wang Y, Hodgkinson V, Zhu S, Weisman GA, Petris MJ. Advances in Nutrition; 2(2):129-137.

Date published: March 1, 2011
Featured in this article: Gary Weisman, Michael Petris.

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Analysis of B-genome chromosome introgression in interspecific hybrids of Brassica napus x B. carinata. Navabi ZK, Stead KE, Pires JC, Xiong Z, Sharpe AG, Parkin IAP, Rahman MH, Good AG. Genetics; 187(3):659-673.

Date published: March 1, 2011
Featured in this article: J. Chris Pires.

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Introduction to special issue on biodiversity. Raven PH, Chase JM, Chris Pires J. American Journal of Botany; 98(3):333-335.

Date published: March 1, 2011
Featured in this article: J. Chris Pires.

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Biodiversity assessment: State-of-the-art techniques in phylogenomics and species identification. Roxanne Steele P, Chris Pires J. American Journal of Botany; 98(3):415-425.

Date published: March 1, 2011
Featured in this article: J. Chris Pires.

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The folylpolyglutamate synthetase plastidial isoform is required for postembryonic root development in Arabidopsis. Srivastava AC, Ramos-Parra PA, Bedair M, Robledo-Hernández AL, Tang Y, Sumner LW, Díaz de la Garza RI, Blancaflor EB. Plant Physiology; 155(3):1237-1251.

Date published: March 1, 2011
Featured in this article: Lloyd Sumner.

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Quantitation of soybean allergens using tandem mass spectrometry. Houston NL, Lee D-G, Stevenson SE, Ladics GS, Bannon GA, McClain S, Privalle L, Stagg N, Herouet-Guieheney C, MacIntosh SC, Thelen JJ. Journal of Proteome Research; 10(2):763-773.

Date published: February 4, 2011
Featured in this article: Jay Thelen.

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Muscle satellite cell proliferation and association: new insights from myofiber time-lapse imaging. Siegel AL, Kuhlmann PK, Cornelison DDW. Skeletal Muscle; 1(1):7.

Date published: February 2, 2011
Featured in this article: D Cornelison.

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Quantifying alternatively spliced mRNA via capillary electrophoresis. Zhang XC, Gassmann W. Methods in molecular biology (Clifton, N.J.); 712:69-77.

Date published: February 1, 2011
Featured in this article: Walter Gassmann.

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Combination of SMN trans-splicing and a neurotrophic factor increases the life span and body mass in a severe model of spinal muscular atrophy. Shababi M, Glascock J, Lorson CL. Human Gene Therapy; 22(2):135-144.

Date published: February 1, 2011
Featured in this article: Christian Lorson.

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vanishing tassel2 Encodes a Grass-Specific tryptophan aminotransferase required for vegetative and reproductive development in maize. Phillips KA, Skirpan AL, Liu X, Christensen A, Slewinski TL, Hudson C, Barazesh S, Cohen JD, Malcomber S, McSteen P. Plant Cell; 23(2):550-566.

Date published: February 1, 2011
Featured in this article: Paula McSteen.

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The genome of woodland strawberry (Fragaria vesca). Shulaev V, Sargent DJ, Crowhurst RN, Mockler TC, Folkerts O, Delcher AL, Jaiswal P, Mockaitis K, Liston A, Mane SP, Burns P, Davis TM, Slovin JP, Bassil N, Hellens RP, Evans C, Harkins T, Kodira C, Desany B, Crasta OR, Jensen RV, Allan AC, Michael TP, Setubal JC, Celton J-M, Rees DJG, Williams KP, Holt SH, Rojas JJR, Chatterjee M, Liu B, Silva H, Meisel L, Adato A, Filichkin SA, Troggio M, Viola R, Ashman T-L, Wang H, Dharmawardhana P, Elser J, Raja R, Priest HD, Bryant DW, Fox SE, Givan SA, Wilhelm LJ, Naithani S, Christoffels A, Salama DY, Carter J, Girona EL, Zdepski A, Wang W, Kerstetter RA, Schwab W, Korban SS, Davik J, Monfort A, Denoyes-Rothan B, Arus P, Mittler R, Flinn B, Aharoni A, Bennetzen JL, Salzberg SL, Dickerman AW, Velasco R, Borodovsky M, Veilleux RE, Folta KM. Nature Genetics; 43(2):109-116.

Date published: February 1, 2011
Featured in this article: Ron Mittler.

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Extranuclear protection of chromosomal DNA from oxidative stress. Vanderauwera S, Suzuki N, Miller G, Van De Cotte B, Morsa S, Ravanat J-L, Hegie A, Triantaphylidès C, Shulaev V, Van Montagu MCE, Van Breusegem F, Mittler R. Proceedings of the National Academy of Sciences of the United States of America; 108(4):1711-1716.

Date published: January 25, 2011
Featured in this article: Ron Mittler.

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A seed high-lysine trait is negatively associated with the TCA cycle and slows down Arabidopsis seed germination. Angelovici R, Fait A, Fernie AR, Galili G. New Phytologist; 189(1):148-159.

Date published: January 1, 2011
Featured in this article: Ruthie Angelovici.

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Regressive progression, progressive regression or neither? Phylogeny and evolution of the Percopsiformes (Teleostei, Paracanthopterygii). Dillman CB, Bergstrom DE, Noltie DB, Holtsford TP, Mayden RL. Zoologica Scripta; 40(1):45-60.

Date published: January 1, 2011
Featured in this article: Dean Bergstrom.

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Contrasting patterns of support among plastid genes and genomes for major clades of the monocotyledons. Davis JI, McNeal JR, Barrett CF, Chase MW, Cohen JI, Duvall MR, Givnish TJ, Graham SW, Petersen G, Pires JC, Seberg O, Stevenson DW, Leebens-Mack J. Early Events in Monocot Evolution; 315-349.

Date published: January 1, 2011
Featured in this article: J. Chris Pires.

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Karyotype and identification of all homoeologous chromosomes of allopolyploid Brassica napus and its diploid progenitors. Xiong Z, Chris Pires J. Genetics; 187(10:37-49.

Date published: January 1, 2011
Featured in this article: J. Chris Pires.

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Prediction of Drought-Resistant genes in Arabidopsis thaliana using SVM-RFE. Liang Y, Zhang F, Wang J, Joshi T, Wang Y, Xu D. PLoS ONE; 6(7):e21750.

Date published: January 1, 2011
Featured in this article: Juexin Wang, Trupti Joshi, Dong Xu.

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K70Q adds high-level tenofovir resistance to “Q151M complex” HIV reverse transcriptase through the enhanced discrimination mechanism. Hachiya A, Kodama EN, Schuckmann MM, Kirby KA, Michailidis E, Sakagami Y, Oka S, Singh K, Sarafianos SG. PLoS ONE; 6(1):e16242.

Date published: January 1, 2011
Featured in this article: Kamlendra Singh.

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The sugar ring conformation of 4′-ethynyl-2-fluoro-2′-deoxyadenosine and its recognition by the polymerase active site of HIV reverse transcriptase. Kirby KA, Singh K, Michailidis E, Marchand B, Kodama EN, Ashida N, Mitsuya H, Parniak MA, Sarafianos SG. Molecular and Cellular Biology; 57(1):40-46.

Date published: January 1, 2011
Featured in this article: Kamlendra Singh.

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Emerging trends in biochemistry issue. Sharma B, Watal G, Singh K. Molecular and Cellular Biology; 57(1):1-2.

Date published: January 1, 2011
Featured in this article: Kamlendra Singh.

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Enzymatic role for soybean ecto-apyrase in nodulation. Tanaka K, Nguyen THN, Stacey G. Plant Signaling and Behavior; 6(7):1034-1036.

Date published: January 1, 2011
Featured in this article: Gary Stacey.

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A protein domain Co-occurrence network approach for predicting protein function and inferring species phylogeny. Wang Z, Zhang X-C, Le MH, Xu D, Stacey G, Cheng J. PLoS ONE; 6(3):e17906.

Date published: January 1, 2011
Featured in this article: Dong Xu, Gary Stacey.

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Global and targeted proteomics in developing jack bean (Canavalia ensiformis) seedlings: An investigation of urease isoforms mobilization in early stages of development. Demartini DR, Carlini CR, Thelen JJ. Plant Molecular Biology; 75(1):53-65.

Date published: January 1, 2011
Featured in this article: Jay Thelen.

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Proteome databases and other online resources for chloroplast research in Arabidopsis. Demartini DR, Carlini CR, Thelen JJ. Methods in Molecular Biology; 775:93-115.

Date published: January 1, 2011
Featured in this article: Jay Thelen.

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2010

Assembling the tree of the monocotyledons: Plastome sequence phylogeny and evolution of Poales. Givnish TJ, Ames M, McNeal JR, McKain MR, Steele PR, Depamphilis CW, Graham SW, Pires JC, Stevenson DW, Zomlefer WB, Briggs BG, Duvall MR, Moore MJ, Heaney JM, Soltis DE, Soltis PS, Thiele K, Leebens-Mack JH. Annals of the Missouri Botanical Garden; 97(4):584-616.

Date published: December 27, 2010
Featured in this article: J. Chris Pires.

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Tonoplast-localized Abc2 transporter mediates phytochelatin accumulation in vacuoles and confers cadmium tolerance. Mendoza-Cózatl DG, Zhai Z, Jobe TO, Akmakjian GZ, Song W-Y, Limbo O, Russell MR, Kozlovskyy VI, Martinoia E, Vatamaniuk OK, Russell P, Schroeder JI. Journal of Biological Chemistry; 285(52):40416-40426.

Date published: December 24, 2010
Featured in this article: David Mendoza-Cózatl.

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SoyMetDB: The Soybean Metabolome Database. Joshi T, Yao Q, Franklin LD, Brechenmacher L, Valliyodan B, Stacey G, Nguyen H, Xu D. Proceedings - 2010 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2010; 203-208.

Date published: December 18, 2010
Featured in this article: Trupti Joshi, Gary Stacey, Dong Xu.

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Arsenic tolerance in Arabidopsis is mediated by two ABCC-type phytochelatin transporters. Song W-Y, Park J, Mendoza-Cózatl DG, Suter-Grotemeyer M, Shima D, Hörtensteiner S, Geisler M, Weder B, Rea PA, Rentsch D, Schroeder JI, Lee Y, Martinoia E. Proceedings of the National Academy of Sciences of the United States of America; 107(49):21187-21192.

Date published: December 7, 2010
Featured in this article: David Mendoza-Cózatl.

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The N348I mutation at the connection subdomain of HIV-1 reverse transcriptase decreases binding to nevirapine. Schuckmann MM, Marchand B, Hachiya A, Kodama EN, Kirby KA, Singh K, Sarafianos SG. Journal of Biological Chemistry; 285(49):38700-38709.

Date published: December 3, 2010
Featured in this article: Kamlendra Singh.

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Comparative proteomics of yeast-elicited medicago truncatula cell suspensions reveals induction of isoflavonoid biosynthesis and cell wall modifications. Lei Z, Chen F, Watson BS, Nagaraj S, Elmer AM, Dixon RA, Sumner LW. Journal of Proteome Research; 9(12):6220-6231.

Date published: December 3, 2010
Featured in this article: Zhentian Lei, Lloyd Sumner.

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Assembly and activation of a kinase ribozyme. Burke DH, Rhee SS. RNA; 16(12):2349-2359.

Date published: December 1, 2010
Featured in this article: Donald Burke-Agüero.

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Musite, a tool for global prediction of general and kinase-specific phosphorylation sites. Gao J, Thelen JJ, Dunker AK, Xu D. Molecular and Cellular Proteomics; 9(12):2586-2600.

Date published: December 1, 2010
Featured in this article: Jay Thelen, Dong Xu.

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Evolution of seed allergen quantification – From antibodies to mass spectrometry. Stevenson SE, Houston NL, Thelen JJ. Regulatory Toxicology and Pharmacology; 58(3):S36-S41.

Date published: December 1, 2010
Featured in this article: Jay Thelen.

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The arabidopsis resistance-like gene SNC1 is activated by mutations in SRFR1 and contributes to resistance to the bacterial effector AvrRps4. Kim SH, Gao F, Bhattacharjee S, Adiasor JA, Nam JC, Gassmann W. PLoS Pathogens; 6(11):e1001172.

Date published: November 1, 2010
Featured in this article: Walter Gassmann.

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Root hair systems biology. Libault M, Brechenmacher L, Cheng J, Xu D, Stacey G. Trends in Plant Science; 15(11):641-650.

Date published: November 1, 2010
Featured in this article: Dong Xu, Gary Stacey.

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Principal transcriptional regulation and genome-wide system interactions of the Asp-family and aromatic amino acid networks of amino acid metabolism in plants. Less, H., Angelovici, R., Tzin, V., Galili, G. Amino Acids; 39(4):1023-1028.

Date published: October 1, 2010
Featured in this article: Ruthie Angelovici.

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Rat parotid gland cell differentiation in three-dimensional culture. Baker OJ, Schulz DJ, Camden JM, Liao Z, Peterson TS, Seye CI, Petris MJ, Weisman GA. Tissue Engineering - Part C: Methods; 16(5):1135-1144.

Date published: October 1, 2010
Featured in this article: Olga Baker, Jean Camden, Cheikh Seye, Michael Petris, Gary Weisman.

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Convergent donor and acceptor substrate utilization among kinase ribozymes. Biondi E, Nickens DG, Warren S, Saran D, Burke DH. Nucleic Acids Research; 38(19):6785-6795.

Date published: October 1, 2010
Featured in this article: Donald Burke-Agüero.

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Therapeutics that directly increase SMN expression to treat spinal muscular atrophy. Shababi M, Mattis VB, Lorson CL. Drug News and Perspectives; 23(8):475-482.

Date published: October 1, 2010
Featured in this article: Christian Lorson.

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A maize thiamine auxotroph is defective in shoot meristem maintenance. Woodward JB, Abeydeera ND, Paul D, Phillips K, Rapala-Kozik M, Freeling M, Begley TP, Ealick SE, McSteen P, Scanlona MJ. Plant Cell; 22(10):3305-3317.

Date published: October 1, 2010
Featured in this article: Paula McSteen.

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Divergent evolution in reverse transcriptase (RT) of HIV-1 group O and M lineages: Impact on structure, fitness, and sensitivity to nonnucleoside RT inhibitors. Tebit DM, Lobritz M, Lalonde M, Immonen T, Singh K, Sarafianos S, Herchenröder O, Kräusslich H-G, Arts EJ. Journal of Virology; 84(19):9817-9830.

Date published: October 1, 2010
Featured in this article: Kamlendra Singh.

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Extracellular ATP signaling in plants. Tanaka K, Gilroy S, Jones AM, Stacey G. Trends in Cell Biology; 20(10):601-608.

Date published: October 1, 2010
Featured in this article: Gary Stacey.

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Combinatorial selected peptides for protection of soybean against Phakopsora pachyrhizi. Fang ZD, Marois JJ, Stacey G, Schoelz JE, English JT, Schmidt FJ. Phytopathology; 100(10):1111-1117.

Date published: October 1, 2010
Featured in this article: Gary Stacey.

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Evolution of FW2.2-like (FWL) and PLAC8 genes in eukaryotes. Libault M, Stacey G. Plant Signaling and Behavior; 5(10):1226-1228.

Date published: October 1, 2010
Featured in this article: Gary Stacey.

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Nonflowering plants possess a unique folate-dependent phenylalanine hydroxylase that is localized in chloroplasts. Pribat A, Noiriel A, Morse AM, Davis JM, Fouquet R, Loizeau K, Ravanel S, Frank W, Haas R, Reski R, Bedair M, Sumner LW, Hansona AD. Plant Cell; 22(10):3410-3422.

Date published: October 1, 2010
Featured in this article: Lloyd Sumner.

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Root secretion of defense-related proteins is development-dependent and correlated with flowering time. De-la-Peña C, Badri DV, Lei Z, Watson BS, Branda MM, Silva-Filho MC, Sumner LW, Vivanco JM. Journal of Biological Chemistry; 285(40):30654-30665.

Date published: October 1, 2010
Featured in this article: Zhentian Lei, Lloyd Sumner.

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Mass spectrometry analysis of soybean seed proteins: Optimization of gel-free quantitative workflow. Lee D-G, Houston NL, Stevenson SE, Ladics GS, McClain S, Privalle L, Thelen JJ. Analytical Methods; 2(10):1577-1583.

Date published: October 1, 2010
Featured in this article: Jay Thelen.

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Two distinct mechanisms regulate recruitment of murine leukemia virus envelope protein to retroviral assembly sites. Lucas TM, Lyddon TD, Grosse SA, Johnson MC. Virology; 405(2):548-555.

Date published: September 30, 2010
Featured in this article: Terri Lyddon, Marc Johnson.

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Altered microglial copper homeostasis in a mouse model of Alzheimer’s disease. Zheng Z, White C, Lee J, Peterson TS, Bush AI, Sun GY, Weisman GA, Petris MJ. Journal of Neurochemistry; 114(6):1630-1638.

Date published: September 1, 2010
Featured in this article: Gary Weisman, Michael Petris.

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Template-directed ligation of tethered mononucleotides by T4 DNA ligase for kinase ribozyme selection. Nickens DG, Bardiya N, Patterson JT, Burke DH. PLoS ONE; 5(8):e12368.

Date published: August 24, 2010
Featured in this article: Donald Burke-Agüero.

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SNP discovery by high-throughput sequencing in soybean. Wu X, Ren C, Joshi T, Vuong T, Xu D, Nguyen HT. BMC Genomics; 11(1):469.

Date published: August 11, 2010
Featured in this article: Trupti Joshi, Dong Xu.

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Syndecan-3 and Notch cooperate in regulating adult myogenesis. Pisconti A, Cornelison DDW, Olguín HC, Antwine TL, Olwin BB. Journal of Cell Biology; 190(3):427-441.

Date published: August 9, 2010
Featured in this article: D Cornelison.

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Cardiac defects contribute to the pathology of spinal muscular atrophy models. Shababi M, Habibi J, Yang HT, Vale SM, Sewell WA, Lorson CL. Human Molecular Genetics; 19(20):4059-4071.

Date published: August 9, 2010
Featured in this article: Christian Lorson.

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Soybean metabolites regulated in root hairs in response to the symbiotic bacterium Bradyrhizobium japonicum. Brechenmacher L, Lei Z, Libault M, Findley S, Sugawara M, Sadowsky MJ, Sumner LW, Stacey G. Plant Physiology; 153(4):1808-1822.

Date published: August 1, 2010
Featured in this article: Zhentian Lei, Lloyd Sumner, Gary Stacey.

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Introgression of B-genome chromosomes in a doubled haploid population of brassica napus × B. carinata. Navabi ZK, Parkin IAP, Pires JC, Xiong Z, Thiagarajah MR, Good AG, Rahman MH. Genome; 53(8):619-629.

Date published: July 20, 2010
Featured in this article: J. Chris Pires.

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Kelch-like homologue 9 mutation is associated with an early onset autosomal dominant distal myopathy. Cirak S, Von Deimling F, Sachdev S, Errington WJ, Herrmann R, Bönnemann C, Brockmann K, Hinderlich S, Lindner TH, Steinbrecher A, Hoffmann K, Privé GG, Hannink M, Nürnberg P, Voit T. Brain; 133(7):2123-2135.

Date published: July 1, 2010
Featured in this article: Shrikesh C. "Rick" Sachdev, Mark Hannink.

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An LYPSL late domain in the Gag protein contributes to the efficient release and replication of Rous sarcoma virus. Dilley KA, Gregory D, Johnson MC, Vogt VM. Journal of Virology; 84(13):6276-6287.

Date published: July 1, 2010
Featured in this article: Marc Johnson.

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Phosphorylation regulates polarisation of chitin synthesis in Candida albicans. Lenardon MD, Milne SA, Mora-Montes HM, Kaffarnik FAR, Peck SC, Brown AJP, Munro CA, Gow NAR. Journal of Cell Science; 123(13):2199-2206.

Date published: July 1, 2010
Featured in this article: Scott Peck.

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Integration of genetic, physical, and cytogenetic maps for Brassica rapa chromosome A7. Xiong Z, Kim JS, Pires JC. Cytogenetic and Genome Research; 129(1-3):190-198.

Date published: July 1, 2010
Featured in this article: J. Chris Pires.

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Preface. Birchler JA, Pires JC. Cytogenetic and Genome Research; 129(1-3):5.

Date published: July 1, 2010
Featured in this article: J. Chris Pires.

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An integrated transcriptome atlas of the crop model Glycine max, and its use in comparative analyses in plants. Libault M, Farmer A, Joshi T, Takahashi K, Langley RJ, Franklin LD, He J, Xu D, May G, Stacey G. Plant Journal; 63(1):86-99.

Date published: July 1, 2010
Featured in this article: Trupti Joshi, Dong Xu, Gary Stacey.

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A fluorescence in Situ hybridization system for karyotyping soybean. Findley SD, Cannon S, Varala K, Du J, Ma J, Hudson ME, Birchler JA, Stacey G. Genetics; 185(3):727-744.

Date published: July 1, 2010
Featured in this article: Gary Stacey.

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LAP5 and LAP6 encode anther-specific proteins with similarity to chalcone synthase essential for pollen exine development in arabidopsis. Dobritsa AA, Lei Z, Nishikawa S, Urbanczyk-Wochniak E, Huhman DV, Preuss D, Sumner LW. Plant Physiology; 153(3):937-955.

Date published: July 1, 2010
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