2023
A protein subunit vaccine elicits a balanced immune response that protects against Pseudomonas pulmonary infection. Howlader, Debaki R. a, d; Das, Sayan b; Lu, Ti a, d; Mandal, Rahul Shubhra c; Hu, Gang a; Varisco, David J. b; Dietz, Zackary K. a, d; Ratnakaram, Siva Sai Kumar a; Ernst, Robert K. b; Picking, William D. a, d;. npj Vaccines; Volume 8, Issue 1.
Date published:
December 1, 2023
Featured in this article:
Wendy Picking.
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The immune cell landscape and response of Marek’s disease resistant and susceptible chickens infected with Marek’s disease virus. Warren, Wesley C.; Rice, Edward S. a; Meyer, Ashley a; Hearn, Cari J. b; Steep, Alec c; Hunt, Henry D. b; Monson, Melissa S. d, e; Lamont, Susan J. d; Cheng, Hans H.. Scientific Reports ; Volume 13, Issue 1.
Date published:
December 1, 2023
Featured in this article:
Wes Warren.
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Pigmentation and TYRP1 expression are mediated by zinc through the early secretory pathway-resident ZNT proteins. Wagatsuma, Takumi ; Suzuki, Eisuke ; Shiotsu, Miku; Sogo, Akiko ; Nishito, Yukina ; Ando, Hideya ; Hashimoto, Hisashi ; Petris, Michael J.; Kinoshita, Masato; Kambe, Taiho. Communications Biology; Volume 6, Issue 1.
Date published:
December 1, 2023
Featured in this article:
Michael Petris.
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A comprehensive psychological tendency prediction model for pregnant women based on questionnaires. Han, Xiaosong ; Cao, Mengchen ; He, Junru ; Xu, Dong ; Liang, Yanchun ; Lang, Xiaoduo ; Guan, Renchu. Scientific Reports; Volume 13, Issue 1.
Date published:
December 1, 2023
Featured in this article:
Dong Xu.
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Efficient Self-learning Evolutionary Neural Architecture Search. Qiu, Zhengzhong ; Bi, Wei ; Xu, Dong ; Guo, Hua ; Ge, Hongwei ; Liang, Yanchun ; Lee, Heow Pueh ; Wu, Chunguo. Applied Soft Computing; Volume 146.
Date published:
October 1, 2023
Featured in this article:
Dong Xu.
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Contrastive self-supervised learning for diabetic retinopathy early detection. Ouyang, Jihong ; Mao, Dong; Guo, Zeqi a; Liu; Xu, Dong b; Wang, Wenting. Medical and Biological Engineering and Computing; Volume 61, Issue 9, Pages 2441 - 2452.
Date published:
September 1, 2023
Featured in this article:
Dong Xu.
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Maternal COVID vaccination and breastfeeding during a pandemic: Habitus and health behavior decision making. Weston, Karry; Bullock, Linda ; Hsu, Albert L. ; Wan, XiuFeng ; Burnam-Cole, Megan ; Everett, Kevin D. ; McElroy, Jane A.. Public Health Nursing; .
Date published:
August 2, 2023
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XiuFeng “Henry” Wan.
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Transmission of SARS-CoV-2 in free-ranging white-tailed deer in the United States. Feng, Aijing; Bevins, Sarah ; Chandler, Jeff ; DeLiberto, Thomas J. f.; Ghai, Ria ; Lantz, Kristina ; Lenoch, Julianna ; Retchless, Adam ; Shriner, Susan; Tang, Cynthia Y. ; Tong, Suxiang Sue; Torchetti, Mia. Nature Communications; Volume 14, Issue 1.
Date published:
August 2, 2023
Featured in this article:
XiuFeng “Henry” Wan.
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ROS are evolutionary conserved cell-to-cell stress signals. Fichman, Yosef ; Rowland, Linda ; Oliver, Melvin J. ; Mittler, Ron. Proceedings of the National Academy of Sciences of the United States of America; Volume 120, Issue 31.
Date published:
August 1, 2023
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Ron Mittler.
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A High-Throughput Absolute Quantification of Protein-Bound Sulfur Amino Acids from Model and Crop Plant Seeds. Yobi, Abou ; Ansaf, Huda ; Angelovici, Ruthie. Current Protocols; Volume 3, Issue 8.
Date published:
August 1, 2023
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Ruthie Angelovici.
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A High-Throughput Absolute Quantification of Protein-Bound Tryptophan from Model and Crop Seeds. Ansaf, Huda ; Yobi, Abou ; Angelovici, Ruthie. Current Protocols; Volume 3, Issue 8.
Date published:
August 1, 2023
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Ruthie Angelovici.
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Minimizing amplification bias during reverse transcription for in vitro selections. Lucas, Jordyn K.; Gruenke, Paige R.; Burke, Donald H.. RNA; Volume 29, Issue 8, Pages 1301 - 1316.
Date published:
August 1, 2023
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Donald Burke-Agüero.
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Ensemble Deep Learning Object Detection Fusion for Cell Tracking, Mitosis, and Lineage. Toubal, Imad Eddine; Al-Shakarji, Noor; Cornelison, DDW; Palaniappan, K.. IEEE Open Journal of Engineering in Medicine and Biology; Pages 1-17.
Date published:
August 1, 2023
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D Cornelison.
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Multiple Ehrlichia chaffeensis genes critical for persistent infection in a vertebrate host are identified as nonessential for its growth in the tick vector; Amblyomma americanum. Jaworski, Deborah C.; Wang, Ying; Nair, Arathy; Liu, Huitao; Ganta, Roman R.. Frontiers in Cellular and Infection Microbiology; Volume 13.
Date published:
August 1, 2023
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Roman Ganta.
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Applications of cutting-edge artificial intelligence technologies in biomedical literature and document mining. He, Fei; Liu, Kai ; Yang, Zhiyuan ; Hannink, Mark ; Hammer, Richard D. ; Popescu, Mihail ; Xu, Dong. Medical Review; .
Date published:
August 1, 2023
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.
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Sprouty4 is epigenetically upregulated in human colorectal cancer. Stuckel, Alexei J. ; Zeng, Shuai ; Lyu, Zhen , ; Zhang, Wei ; Zhang, Xu ; Dougherty, Urszula ; Mustafi, Reba ; Khare, Tripti ; Zhang, Qiong; Joshi, Trupti b,; Bissonnette, Marc; Khare, Sharad. Epigenetics; Volume 18, Issue 1.
Date published:
August 1, 2023
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Trupti Joshi.
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The transcriptome of soybean reproductive tissues subjected to water deficit, heat stress, and a combination of water deficit and heat stress. Sinha, Ranjita ; Induri, Sai Preethi ; Peláez-Vico, María Ángeles ; Tukuli, Adama ; Shostak, Benjamin ; Zandalinas, Sara I.; Joshi, Trupti; Fritschi, Felix B.; Mittler, Ron. Plant Journal; .
Date published:
August 1, 2023
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Trupti Joshi.
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Adventitial macrophage accumulation impairs perivascular nerve function in mesenteric arteries with inflammatory bowel disease. Grunz, Elizabeth A. ; Jones, Benjamin W. ; Lateef, Olubodun Michael ; Sen, Sidharth ; Wilkinson, Katie ; Joshi, Trupti , ; Boerman, Erika M.. Frontiers in Physiology; Volume 14.
Date published:
August 1, 2023
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Trupti Joshi.
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Immunogenicity and protective efficacy of nanoparticle formulations of L-SseB against Salmonella infection. Das, Sayan; Howlader, Debaki R.; Lu, Ti ; Whittier, Sean K.; Hu, Gang ; Sharma, Simran ; Dietz, Zackary K. ; Ratnakaram, Siva S. K.; Varisco, David J. ; Ernst, Robert K. ; Picking, William D.; Picking, Wendy L.. Frontiers in Immunology; Volume 14.
Date published:
August 1, 2023
Featured in this article:
Wendy Picking.
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Immunogenicity and protective efficacy of nanoparticle formulations of L-SseB against Salmonella infection. Das, Sayan; Howlader, Debaki R. ; Lu, Ti ; Whittier, Sean K. ; Hu, Gang ; Sharma, Simran ; Dietz, Zackary K. ; Ratnakaram, Siva S. K. ;Varisco, David J. ; Ernst, Robert K. ; Picking, William D.; Picking, Wendy L.. Frontiers in Immunology; Volume 14.
Date published:
August 1, 2023
Featured in this article:
William Picking.
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Synthesis and preclinical evaluation of a novel fluorine-18 labeled small-molecule PET radiotracer for imaging of CXCR3 receptor in mouse models of atherosclerosis. Alluri, Santosh R. ; Higashi, Yusuke ; Berendzen, Ashley ; Grisanti, Laurel A. ; Watkinson, Lisa D. ; Singh, Kamlendra ; Hoffman, Timothy J. ; Carmack, Terry ; Devanny, Elizabeth A.. EJNMMI Research; Volume 13, Issue 1.
Date published:
August 1, 2023
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Kamlendra Singh.
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Applications of cutting-edge artificial intelligence technologies in biomedical literature and document mining. He, Fei ; Liu, Kai ; Yang, Zhiyuan ; Hannink, Mark ; Hammer, Richard D.; Popescu, Mihail; Xu, Dong. Medical Review; .
Date published:
August 1, 2023
Featured in this article:
Dong Xu.
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Assessing Environmental Oil Spill Based on Fluorescence Images of Water Samples and Deep Learning. Liu D.P.; Liu M. ; Sun G.Y. ; Zhou Z.Q. ; Wang D.L.; He F. ; Li J.X. ; Xie J.C ; Gettler R.; Brunson E.; Steevens J; Xu D.. Journal of Environmental Informatics; Volume 42, Issue 1, Pages 1 - 12.
Date published:
August 1, 2023
Featured in this article:
Dong Xu.
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Synthesis, structure-activity relationships and biological evaluation of benzimidazole derived sulfonylurea analogues as a new class of antagonists of P2Y1 receptor. Bano, Sehrish; Hussain, Zahid; Langer, Peter; Weisman, Gary A.; Iqbal, Jamshed. Frontiers in Pharmacology; Volume 14.
Date published:
July 13, 2023
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Gary Weisman.
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APOE expression and secretion are modulated by mitochondrial dysfunction. Wynne, Meghan E. ; Ogunbona, Oluwaseun ; Lane, Alicia R. ; Gokhale, Avanti ; Zlatic, Stephanie A. ; Xu, Chongchong ; Wen, Zhexing ,; Duong, Duc M. ; Rayaprolu, Sruti ; Ivanova, Anna; Ortlund, Eric A.; Dammer, Eric B.. eLife; Volume 12.
Date published:
July 13, 2023
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Michael Petris.
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Die Kämpfe únd schláchten—the struggles and battles of innate-like effector T lymphocytes with microbes. Joyce, Sebastian; Okoye, Gosife Donald; Driver, John P.. Frontiers In Immunology ; Volume 14.
Date published:
July 12, 2023
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John Driver.
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A second unveiling: Haplotig masking of the eastern oyster genome improves population-level inference. Puritz, Jonathan B.; Guo, Ximing b; Hare, Matthew c; He, Yan b; Hillier, LaDeana W. d; Jin, Shubo b; Liu, Ming b; Lotterhos, Katie E. e; Minx, Pat f; Modak, Tejashree g; Proestou, Dina h; Rice, Edward S. i. Molecular Ecology Resources; Open Access.
Date published:
July 12, 2023
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Wes Warren.
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Genomic landscape and gene expression profiles of feline oral squamous cell carcinoma. Rodney, Alana R. a; Skidmore, Zachary L. b; Grenier, Jennifer K. c; Griffith, Obi L. b; Miller, Andrew D. c; Chu, Shirley d; Ahmed, Faraz c; Bryan, Jeffrey N. d; Peralta, Santiago; Warren, Wesley C.. Frontiers in Veterinary Science ; Volume 10.
Date published:
July 12, 2023
Featured in this article:
Wes Warren.
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Single-cell and spatial transcriptomics identify a macrophage population associated with skeletal muscle fibrosis. Coulis, Gerald ; Jaime, Diego ; Guerrero-Juarez, Christian ; Kastenschmidt, Jenna M.; Farahat, Philip K. ; Nguyen, Quy ; Pervolarakis, Nicholas ; McLinden, Katherine ; Thurlow, Lauren ; Movahedi, Saba; Hughes, Brandon S.; Duarte, Jorge. Science advances; Volume 9, Issue 27, Pages eadd9984.
Date published:
July 7, 2023
Featured in this article:
Trupti Joshi.
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MULocDeep web service for protein localization prediction and visualization at subcellular and suborganellar levels. Jiang, Yuexu ; Jiang, Lei ; Akhil, Chopparapu Sai ; Wang, Duolin ; Zhang, Ziyang ; Zhang, Weinan ; Xu, Dong. Nucleic Acids Research; Volume 51, Issue W1, Pages W343 - W349.
Date published:
July 5, 2023
Featured in this article:
Dong Xu.
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A protein subunit vaccine elicits a balanced immune response that protects against Pseudomonas pulmonary infection. Howlader, Debaki R. a, d; Das, Sayan b; Lu, Ti a, d; Mandal, Rahul Shubhra c; Hu, Gang a; Varisco, David J. b; Dietz, Zackary K. a, d; Ratnakaram, Siva Sai Kumar a; Ernst, Robert K. b; Picking, William D. a, d; Picking, Wendy L.. npj Vaccines; Volume 8, Issue 1.
Date published:
July 1, 2023
Featured in this article:
William Picking.
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Regulation of Atp7a RNA contributes to differentiation-dependent Cu redistribution in skeletal muscle cells. Whitlow, Thomas J. ; Zhang, Yu ; Ferguson, Nathan ; Perez, Alexandra M. ; Patel, Hemchandra ; Link-Kemp, Josephine A. ; Larson, Ethan M. ; Mezzell, Allison T. ; Shanbhag, Vinit C. ; Petris, Michael J.; Vest, Katherine E.. Metallomics; Volume 15, Issue 7.
Date published:
July 1, 2023
Featured in this article:
Michael Petris.
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Physicochemical characterization of biological and synthetic forms of two lipid A-based TLR4 agonists. Hu, Gang; Varisco, David J. ; Das, Sayan ; Middaugh, C. Russell ; Gardner, Francesca ; Ernst, Robert K. ; Picking, Wendy L.; Picking, William D.. Heliyon; Volume 9, Issue 7.
Date published:
July 1, 2023
Featured in this article:
Wendy Picking.
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Physicochemical characterization of biological and synthetic forms of two lipid A-based TLR4 agonists. Hu, Gang; Varisco, David J. ; Das, Sayan ; Middaugh, C. Russell ; Gardner, Francesca; Ernst, Robert K.; Picking, Wendy L.; Picking, William D.. Heliyon; Volume 9, Issue 7.
Date published:
July 1, 2023
Featured in this article:
William Picking.
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Critical role for uricase and xanthine dehydrogenase in soybean nitrogen fixation and nodule development. Nguyen, Cuong X. a; Dohnalkova, Alice b; Hancock, C. Nathan c; Kirk, Kendall R. d; Stacey, Gary a, e; Stacey, Minviluz G. a. Plant Genome; Volume 16, Issue 2.
Date published:
June 1, 2023
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Minviluz (Bing) Stacey.
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Critical role for uricase and xanthine dehydrogenase in soybean nitrogen fixation and nodule development. Nguyen, Cuong X. a; Dohnalkova, Alice b; Hancock, C. Nathan c; Kirk, Kendall R. d; Stacey, Gary a, e; Stacey, Minviluz G. a. Plant Genome; Volume 16, Issue 2.
Date published:
June 1, 2023
Featured in this article:
Gary Stacey.
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Substrate profiling of the Arabidopsis Ca2+-dependent protein kinase AtCPK4 and its Ricinus communis ortholog RcCDPK1. Kilburn, Ryan a; Fedosejevs, Eric T. b; Mehta, Devang c; Soleimani, Faranak a; Ghahremani, Mina a; Monaghan, Jacqueline a; Thelen, Jay J. b; Uhrig, R. Glen c; Snedden, Wayne A. a; Plaxton, William C. a Send mail to Plaxton W.C.. Plant Science; Volume 331.
Date published:
June 1, 2023
Featured in this article:
Jay Thelen.
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Seasonal and water restriction-related changes in Eucalyptus grandis leaf proteins: Shedding light on the dark proteome. Jorge, Gabriel L. a, b; de Paula, Rinaldo C. a; Mooney, Brian b, c; Thelen, Jay J. b, c; Balbuena, Tiago S. a. Current Plant Biology; Volume 34.
Date published:
June 1, 2023
Featured in this article:
Jay Thelen.
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A 37 K SNP array for the management and conservation of Golden Eagles (Aquila chrysaetos). Judkins, Megan E. a; Roemer, Gary W. c, o; Millsap, Brian A. d; Barnes, Joseph G. e; Bedrosian, Bryan E. f; Clarke, Stephen L. g; Domenech, Robert h; Herring, Garth i; Lamont, Myles j; Smith, Brian W. k; Stahlecker, Dale W. l; Stuber, Matthew J. m. Conservation Genetics; Volume 24, Issue 3, Pages 391 - 404.
Date published:
June 1, 2023
Featured in this article:
Wes Warren.
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Therapeutic potential for P2Y2 receptor antagonism. Jasmer, Kimberly J.; Muñoz Forti, Kevin; Woods, Lucas T.; Cha, Seunghee ; Weisman, Gary A.. Purinergic Signaling; Volume 19, Issue 2, Pages 401 - 420.
Date published:
June 1, 2023
Featured in this article:
Gary Weisman.
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Intraoperative Visualization and Treatment of Salivary Gland Dysfunction in Sjögren’s Syndrome Patients Using Contrast-Enhanced Ultrasound Sialendoscopy (CEUSS). Karagozoglu, K. Hakki ; Mahraoui, Anissa ; Bot, Joseph C. J. ; Cha, Seunghee ; Ho, Jean-Pierre T. F. ; Helder, Marco N. ; Brand, Henk S. ; Bartelink, Imke H. ; Vissink, Arjan ; Weisman, Gary A. Journal of Clinical Medicine; Volume 12, Issue 12.
Date published:
June 1, 2023
Featured in this article:
Gary Weisman.
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Differential transpiration between pods and leaves during stress combination in soybean. Sinha, Ranjita ; Shostak, Benjamin ; Induri, Sai Preethi ; Sen, Sidharth ; Zandalinas, Sara I. ; Joshi, Trupti; Fritschi, Felix B. ; Mittler, Ron. Plant Physiology; Volume 192, Issue 2, Pages 753 - 766.
Date published:
June 1, 2023
Featured in this article:
Trupti Joshi.
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ChatGPT opens a new door for bioinformatics. Xu, Dong. Quantitative Biology; Volume 11, Issue 2, Pages 204 - 206.
Date published:
June 1, 2023
Featured in this article:
Dong Xu.
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Differential transpiration between pods and leaves during stress combination in soybean. Sinha, Ranjita a; Shostak, Benjamin a; Induri, Sai Preethi b; Sen, Sidharth c; Zandalinas, Sara I. d; Joshi, Trupti b, c, e; Fritschi, Felix B. a; Mittler, Ron a, f. Plant physiology; Volume 192, Issue 2, Pages 753 - 766.
Date published:
May 31, 2023
Featured in this article:
Ron Mittler.
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A dolabralexin-deficient mutant provides insight into specialized diterpenoid metabolism in maize. Murphy, Katherine M.; Dowd, Tyler ; Khalil, Ahmed ; Char, Si Nian ; Yang, Bing ; Endelman, Benjamin J. ; Shih, Patrick M.; Topp, Christopher ; Schmelz, Eric A. ; Zerbe, Philipp. Plant physiology; Volume 192, Issue 2, Pages 1338 - 1358.
Date published:
May 31, 2023
Featured in this article:
Bing Yang.
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The Raf-like MAPKKK INTEGRIN-LINKED KINASE 5 regulates purinergic receptor-mediated innate immunity in Arabidopsis. Kim, Daewon a; Chen, Dongqin a; Ahsan, Nagib b; Jorge, Gabriel Lemes b; Thelen, Jay J. b; Stacey, Gary. Plant Cell; Volume 35, Issue 5, Pages 1572 - 1592.
Date published:
May 1, 2023
Featured in this article:
Gary Stacey.
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Acetylene Reduction Assay: A Measure of Nitrogenase Activity in Plants and Bacteria. Montes-Luz, Bruna a; Conrado, Ana Caroline b; Ellingsen, Jared K. a; Monteiro, Rose Adele b; de Souza, Emanuel Maltempi b; Stacey, Gary. Current Protcols; Volume 3, Issue 5.
Date published:
May 1, 2023
Featured in this article:
Gary Stacey.
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The Raf-like MAPKKK INTEGRIN-LINKED KINASE 5 regulates purinergic receptor-mediated innate immunity in Arabidopsis. Kim, Daewon a; Chen, Dongqin a; Ahsan, Nagib b; Jorge, Gabriel Lemes b; Thelen, Jay J. b; Stacey, Gary a, b. Plant Cell; Volume 35, Issue 5, Pages 1572 - 1592.
Date published:
May 1, 2023
Featured in this article:
Jay Thelen.
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US National Institutes of Health Prioritization of SARS-CoV-2 Variants. Turner, Sam ; Alisoltani, Arghavan ; Bratt, Debbie ; Cohen-Lavi, Liel ; Dearlove, Bethany L. ; Drosten, Christian ; Fischer, Will M. ; Fouchier, Ron A.M. ; Gonzalez-Reiche, Ana Silvia ; Jaroszewski, Lukasz ; Khalil, Zain ; LeGresley, Eric. Emerging Infectious Diseases; Volume 29, Issue 5, Pages E1 - E9.
Date published:
May 1, 2023
Featured in this article:
Marc Johnson.
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A splicing variant of EDS1 from Vitis vinifera forms homodimers but no heterodimers with PAD4. Voss M, Cseke L J, Gassmann W, Niefind K. Protein Science; Volume 32, Issue 4.
Date published:
April 1, 2023
Featured in this article:
Leland Cseke,
Walter Gassmann.
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Hormonal control of medial–lateral growth and vein formation in the maize leaf. Robil J M, McSteen P. New Phytologist; Volume 238, Issue 1, Pages 125 - 141.
Date published:
April 1, 2023
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Paula McSteen.
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Genomic analysis of two phlebotomine sand fly vectors of Leishmania from the New and Old World. Labbé, Frédéric a; Abdeladhim, Maha b; Abrudan, Jenica c; Araki, Alejandra Saori d; Araujo, Ricardo N. e; Arensburger, Peter f; Benoit, Joshua B. g; Brazil, Reginaldo Pecanha h; Bruno, Rafaela V. d; Rivas, Gustavo Bueno da Silva d, i; de Abreu, Vinicius Carvalho j; Charamis, Jason k. PLoS Neglected Tropical Diseases; Volume 17, Issue 4.
Date published:
April 1, 2023
Featured in this article:
Wes Warren.
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High resolution genomes of multiple Xiphophorus species provide new insights into microevolution, hybrid incompatibility, and epistasis. Lu, Yuan; Rice, Edward b; Du, Kang a; Kneitz, Susanne c; Naville, Magali d; Dechaud, Corentin d; Volff, Jean-Nicolas d; Boswell, Mikki a; Boswell, William a; Hillier, LaDeana e; Tomlinson, Chad f; Milin, Kremitzki f. Genome Research; Volume 33, Issue 4, Pages 557 - 571.
Date published:
April 1, 2023
Featured in this article:
Wes Warren.
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Meta-learning for T cell receptor binding specificity and beyond Open Access. Wang, Duolin ; He, Fei ; Yu, Yang ; Xu, Dong. Nature Machine Intelligence; Volume 5, Issue 4, Pages 337 - 339.
Date published:
April 1, 2023
Featured in this article:
Dong Xu.
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Editorial overview: Not everyone can become a cell biologist, but a great cell biologist can come from anywhere. Mendoza-Cozatl D G. Current Opinion in Plant Biology; Volume 73.
Date published:
March 31, 2023
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David Mendoza-Cózatl.
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Single-nuclei RNA sequencing (snRNA-seq) uncovers trophoblast cell types and lineages in the mature bovine placenta. Davenport, Kimberly M. a; Ortega, M. Sofia a; Liu, Hongyu a; O’Neil, Eleanore V. a; Kelleher, Andrew M. b; Warren, Wesley C. a, c; Spencer, Thomas E.. Proceedings of the National Academy of Sciences of the United States of America; Volume 120, Issue 12.
Date published:
March 21, 2023
Featured in this article:
Wes Warren.
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Large and stable genome edits at the sorghum alpha kafirin locus result in changes in chromatin accessibility and globally increased expression of genes encoding lysine enrichment. Hurst J P, Yobi A, Li A, Sato S, Clemente T E, Angelovici R, Holding D R. Frontiers in Plant Science; Volume 14.
Date published:
March 14, 2023
Featured in this article:
Abou Yobi,
Ruthie Angelovici.
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The Allele Catalog Tool: a web-based interactive tool for allele discovery and analysis. Chan Y O, Dietz N, Zeng S, Wang J, Flint-Garcia S, Salazar-Vidal M N, Skrabisova M, Bilyeu K, Joshi T. BMC Genomics; Volume 24, Issue 1.
Date published:
March 10, 2023
Featured in this article:
Yen On Chan,
,
Trupti Joshi.
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FDX1-dependent and independent mechanisms of elesclomol-mediated intracellular copper delivery. Zulkifli M, Spelbring A N, Zhang Y, Soma S, Chan S, Li L, Le T, Shanbhag V, Petris M J, Chan T, Ralle M, Barondeau D P, Gohil V M. Proceedings of the National Academy of Sciences of the United States of America; Volume 120, Issue 10, Pages e2216722120.
Date published:
March 7, 2023
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Vinit Shanbhag,
Michael Petris.
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Phytochrome B regulates reactive oxygen signaling during abiotic and biotic stress in plants. Fichman Y, Xiong H, Sengupta S, Morrow J, Loog H, Azad R K, Hibberd J M, Liscum E, Mittler R. New Phytologist; Volume 237, Issue 5, Pages 1711 - 1727.
Date published:
March 1, 2023
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,
Ron Mittler.
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CRISPR-induced miRNA156-recognition element mutations in TaSPL13 improve multiple agronomic traits in wheat. Gupta A, Hua L, Zhang Z, Yang B, Li W. Plant Biotechnology Journal; Volume 21, Issue 3, Pages 536 - 548.
Date published:
March 1, 2023
Featured in this article:
Ajay Gupta ,
Zhengzhi Zhang,
Bing Yang.
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Normal muscle fiber type distribution is recapitulated in aged ephrin-A3-/- mice that previously lacked most slow myofibers. Arpke R W, Moritz T C, Hahn K L, Stark D A, Villalon E, Lorosn C L, Cornelison D. American journal of physiology. Cell physiology; Volume 324, Issue 3, Pages C718 - C727.
Date published:
March 1, 2023
Featured in this article:
Robert Arpke,
Christian Lorson,
D Cornelison.
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Mitochondria Localized microRNAs: An Unexplored miRNA Niche in Alzheimer’s Disease and Aging. Rivera J, Gangwani L, Kumar S. Cells; Volume 12, Issue 5.
Date published:
March 1, 2023
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Laxman Gangwani.
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Plastid Phosphatidylglycerol Homeostasis Is Required for Plant Growth and Metabolism in Arabidopsis thaliana. Chen, Mingjie a, b; Wang, Shiya a; Zhang, Yi c; Fang, Dongsheng a; Thelen, Jay J. b. Metabolites ; Volume 13, Issue 3.
Date published:
March 1, 2023
Featured in this article:
Jay Thelen.
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SARS-CoV-2 Exposure in Norway Rats (Rattus norvegicus) from New York City. Wang, Yang a, b, c; Lenoch, Julianna d; Kohler, Dennis d; DeLiberto, Thomas J.; Tang, Cynthia Y. a, b, c; Li, Tao f; Tao, Yizhi Jane g; Guan, Minhui a, b, c; Compton, Susan h; Zeiss, Caroline h; Hang, Jun f; Wan, Xiu-Feng. mBio; Volume 14, Issue 2.
Date published:
March 1, 2023
Featured in this article:
XiuFeng “Henry” Wan.
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Plant-exuded chemical signals induce surface attachment of the bacterial pathogen Pseudomonas syringae. O’Malley, Megan R. ; Kpenu, Eyram ; Peck, Scott C. ; Anderson, Jeffrey C.. PeerJ; Volume 11.
Date published:
March 1, 2023
Featured in this article:
Scott Peck.
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Valency and affinity control of aptamer-conjugated nanoparticles for selective cancer cell targeting. Woythe, Laura; Porciani, David; Harzing, Tessa; van Veen, Stijn; Burke, Donald H.; Albertazzi, Lorenzo. Journal of Controlled Release; Volume 355, Pages 228 - 237.
Date published:
March 1, 2023
Featured in this article:
Donald Burke-Agüero.
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Single-cell biological network inference using a heterogeneous graph transformer. Ma A, Wang X, Li J, Wang C, Xiao T, Liu Y, Chang H, Wang J, Li Y, Chang Y, Li J, Wang D, Jiang Y, Su L, Xin G, Gu S, Li Z, Liu B, Xu D, Ma Q. Nature Communications; Volume 14, Issue 1.
Date published:
February 21, 2023
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Jinpu Li,
Duolin Wang,
Yuexu Jiang,
Li Su,
Dong Xu.
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Semi-supervised active learning hypothesis verification for improved geometric expression in three-dimensional object recognition. Wang Z, Xu R, Nie T, Xu D. Engineering Applications of Artificial Intelligence; Volume 120.
Date published:
February 10, 2023
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Dong Xu.
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De novo transcriptome assembly from the nodal root growth zone of hydrated and water-deficit stressed maize inbred line FR697. Sen S, King S, McCubbin T, Greeley L A, Mertz R A, Becker C, Niehues N, Zeng S, Stemmle J T, Peck S, Oliver M, Fritschi F B, Braun D M, Sharp R E, Joshi T. Scientific Reports; Volume 13, Issue 1.
Date published:
February 4, 2023
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,
Scott Peck,
Trupti Joshi.
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Domain-Specific Topic Model for Knowledge Discovery in Computational and Data-Intensive Scientific Communities. Zhang Y, Calyam P, Joshi T, Nair S, Xu D. IEEE Transactions on Knowledge and Data Engineering; Volume 35, Issue 2, Pages 1402 - 1420.
Date published:
February 1, 2023
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Dong Xu,
Trupti Joshi.
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Jasmonic acid and salicylic acid modulate systemic reactive oxygen species signaling during stress responses. Myers R J, Fichman Y, Zandalinas S I, Mittler R. Plant Physiology; Volume 191, Issue 2, Pages 862 - 873.
Date published:
February 1, 2023
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,
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Mapping Genetic Variation in Arabidopsis in Response to Plant Growth-Promoting Bacterium Azoarcus olearius DQS-4T. Plucani do Amaral F, Wang J, Williams J, Tuleski T R, Joshi T, Ferreira M A R, Stacey G. Microorganisms; Volume 11, Issue 2.
Date published:
February 1, 2023
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Trupti Joshi,
Gary Stacey.
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Super-Resolution Imaging of Plant Receptor-Like Kinases Uncovers Their Colocalization and Coordination with Nanometer Resolution. Traeger, Jeremiah a Send mail to Traeger J.; Hu, Dehong a; Yang, Mengran b; Stacey, Gary b; Orr, Galya a. Membranes; Volume 13, issue 2.
Date published:
February 1, 2023
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Gary Stacey.
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Convergent Evolution in SARS-CoV-2 Spike Creates a Variant Soup from Which New COVID-19 Waves Emerge. Focosi, Daniele.; Quiroga, Rodrigo ; McConnell, Scott ; Johnson, Marc C. ; Casadevall, Arturo. International Journal of Molecular Sciences; Volume 24, Issue 3.
Date published:
February 1, 2023
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Marc Johnson.
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Cytoplasmic regulation of chloroplast ROS accumulation during effector-triggered immunity. Su J, Gassmann W. Frontiers in Plant Science; Volume 14.
Date published:
January 30, 2023
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Jianbin Su,
Walter Gassmann.
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ABT1 modifies SMARD1 pathology via interactions with IGHMBP2 and stimulation of ATPase and helicase activity. Vadla G P, Ricardez Hernandez S M, Mao J, Garro-Kacher M O, Lorson Z C, Rice R P, Hansen S A, Lorson C L, Singh K, Lorson M A. JCI Insight; Volume 8, Issue 2.
Date published:
January 24, 2023
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,
,
Christian Lorson,
Monique Lorson,
Kamlendra Singh.
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Efficient CRISPR-Cas9 based cytosine base editors for phytopathogenic bacteria. Li C, Wang L, Cseke L J, Vasconcelos F, Huguet-Tapia J C, Gassmann W, Pauwels L, White F F, Dong H, Yang B. Communications Biology; Volume 6, Issue 1.
Date published:
January 17, 2023
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Longfei Wang,
Leland Cseke,
Walter Gassmann,
Bing Yang.
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Genomic diversity, pathogenicity and antimicrobial resistance of Escherichia coli isolated from poultry in the southern United States. Feng A, Akter S, Leigh S A, Wang H, Pharr G T, Evans J, Branton S L, Landinez M P, Pace L, Wan X. BMC Microbiology; Volume 23, Issue 1.
Date published:
January 16, 2023
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Aijing Feng,
XiuFeng “Henry” Wan.
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A Microfluidic Biosensor for Rapid Detection of Covid-19. Muhsin, Sura A. a; He, Ying b, c, d; Al-Amidie, Muthana a; Sergovia, Karen b, c, d; Abdullah, Amjed a; Wang, Yang b, c, d; Alkorjia, Omar a; Hulsey, Robert A. e; Hunter, Gary L. e; Erdal, Zeynep e; Pletka, Ryan J. e; Hyleme, George S. e. Proceedings of the IEEE International Conference on Micro Electro Mechanical Systems (MEMS); Volume 2023-January, Pages 433 - 436.
Date published:
January 15, 2023
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XiuFeng “Henry” Wan.
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Current experimental methods to investigate the impact of specialized pro-resolving lipid mediators on Sjögren’s syndrome. dos Santos H T, Nam K, Gil D, Yellepeddi V, Baker O J. Frontiers in Immunology; Volume 13.
Date published:
January 12, 2023
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Olga Baker,
Harim Tavares dos Santos,
Kihoon Nam.
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Glycoproteomic Analyses of Influenza A Viruses Using timsTOF Pro MS. Wong T L, Mooney B P, Cavallero G J, Guan M, Li L, Zaia J, Wan X. Journal of Proteome Research; Volume 22, Issue 1, Pages 62 - 77.
Date published:
January 6, 2023
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Minhui Guan,
XiuFeng “Henry” Wan.
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AccuCalc: A Python Package for Accuracy Calculation in GWAS. Biova J, Dietz N, Chan Y O, Joshi T, Bilyeu K, Skrabisova M. Genes; Volume 14, Issue 1.
Date published:
January 1, 2023
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Yen On Chan,
Trupti Joshi.
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Vegetative buffer strips show limited effectiveness for reducing antibiotic transport in surface runoff. Moody A H, Lerch R N, Goyne K W, Anderson S H, Mendoza D G, Alvarez D A. Journal of Environmental Quality; Volume 52, Issue 1, Pages 137 - 148.
Date published:
January 1, 2023
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David Mendoza-Cózatl.
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Computational prediction and in vitro analysis of the potential ligand binding site within the extracellular ATP receptor, P2K2. Cho S, Nguyen C T, Pham Q, Stacey G. Plant Signaling and Behavior; Volume 18, Issue 1.
Date published:
January 1, 2023
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Gary Stacey.
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Global dissemination of influenza A virus is driven by wild bird migration through arctic and subarctic zones. Gass, J D, Dusek R J, Hall J S, Hallgrimsson G T, Halldorsson H P, Vignisson S R, Ragnarsdottir S B, Jonsson J E, Krauss S, Wong S, Wan X, Akter S, Sreevatsan S, Trovao N S, Nutter F B, Runstadlet J A, Hill N J. Molecular Ecology; Volume 32, Issue 1, Pages 198 - 213.
Date published:
January 1, 2023
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XiuFeng “Henry” Wan.
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Live Whole-Plant Detection of Rapidly Accumulating Reactive Oxygen Species Following Applied Stress in Arabidopsis thaliana. Myers R J, Zandalinas S I, Mittler R. Methods in Molecular Biology; Volume 2642, Pages 387 - 401.
Date published:
January 1, 2023
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Ronald Jr. Myers,
Ron Mittler.
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Polarly localized WPR proteins interact with PAN receptors and the actin cytoskeleton during maize stomatal development. Nan, Qiong ; Char, Si Nian ; Yang, Bing ; Bennett, Eric J ; Yang, Bing; Facette, Michelle R. Plant Cell; Volume 35, Issue 1, Pages 469 - 487.
Date published:
January 1, 2023
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Bing Yang.
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The transcriptome of soybean reproductive tissues subjected to water deficit, heat stress, and a combination of water deficit and heat stress. Sinha, Ranjita ; Induri, Sai Preethi ; Peláez-Vico, María Ángeles ; Tukuli, Adama ; Shostak, Benjamin ; Zandalinas, Sara I. ; Joshi, Trupti ; Fritschi, Felix B. ; Mittler, Ron. Plant Journal; .
Date published:
January 1, 2023
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Ron Mittler.
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Visualization of Molecular Permeation into a Multi-compartment Phospholipid Vesicle. Neumann, Ehud ; Sohn, Yang Sung ; Povilaitis, Sydney C. ; Cardenas, Alfredo E. ; Mittler, Ron ; Friedler, Assaf ; Webb, Lauren J. ; Nechushtai, Rachel ; Elber, Ron. Journal of Physical Chemistry Letters; Pages 6349 - 6354.
Date published:
January 1, 2023
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Ron Mittler.
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New Frontiers in Endocrine Disruptor Research. Cooke, Paul S. ; Rosenfeld, Cheryl S. b, ; Denslow, Nancy D. ; Martyniuk, Christopher J. ; Mesa, Ana M. ; Bowden, John A. ; Joshi, Trupti ; Wang, Juexin ; Aristizabal-Henao, Juan J. ; Martynyuk, Anatoly E. . Haschek and Rousseaux's Handbook of Toxicologic Pathology, Volume 3: Environmental Toxicologic Pathology and Major Toxicant Classes; Pages 765 - 796.
Date published:
January 1, 2023
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Trupti Joshi.
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Prediction of protein stability changes upon single-point variant using 3D structure profile. Gong, Jianting; Wang, Juexin; Zong, Xizeng; Ma, Zhiqiang; Xu, Dong. Computational and Structural Biotechnology Journal; Volume 21, Pages 354 - 364.
Date published:
January 1, 2023
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Dong Xu.
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2022
Proteome analysis of Ehrlichia chaffeensis containing phagosome membranes revealed the presence of numerous bacterial and host proteins. Kondethimmanahalli C, Ganta R R. Frontiers in Cellular and Infection Microbiology; Volume 12.
Date published:
December 23, 2022
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Roman Ganta.
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Tracking cryptic SARS-CoV-2 lineages detected in NYC wastewater. Smyth D.S., Trujillo M. , Gregory D.A. , Cheung K. , Gao A. , Graham M. , Guan Y., Guldenpfennig C., Hoxie I., Kannoly S., Kubota N. ,Lyddon T.D.. Nature Communications; Volume 13, Issue 1.
Date published:
December 1, 2022
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Terri Lyddon.
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Trans cohort metabolic reprogramming towards glutaminolysis in long-term successfully treated HIV-infection. Mikaeloff F. , Svensson Akusjärvi S. , Ikomey G.M. , Krishnan S. , Sperk M., Gupta S., Magdaleno G.D.V. , Escós A., Lyonga E., Okomo M.C., Tagne C.T., Babu H., Lorson C.L., Végvári Á. , Banerjea A.C. , Kele J. , Hanna L.E. , Singh K. , de Magalhães J.P., Benfeitas R. ,Neogi U.. Communications Biology; Volume 5, Issue 1.
Date published:
December 1, 2022
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Christian Lorson.
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Activation of the plant mevalonate pathway by extracellular ATP. Cho S.-H.,Tóth K., ,Kim D.,Vo P.H., ,Lin C.-H.,Handakumbura P.P.,Ubach A.R.,Evans S.,Paša-Tolić L.,Stacey G.. Nature Communications; Volume 13, Issue 1.
Date published:
December 1, 2022
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Gary Stacey.
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Tracking cryptic SARS-CoV-2 lineages detected in NYC wastewater. Smyth, Davida S., Trujillo, Monica, Gregory, Devon A., Cheung, Kristen, Gao, Anna, Graham, Maddie, Guan, Yue, Guldenpfennig, Caitlyn, Hoxie, Irene, Kannoly, Sherin, Kubota, Nanami, Lyddon, Terri D.,San, Kaung Myat,Markman, Michelle,Rushford, Clayton, Sompanya, Geena, Spagnolo, Fabrizio, Suarez, ReinierTeixeiro, Emma,Daniels, Mark,Johnson, Marc C.,Dennehy, John J.. Nature Communications; Volume 13, Issue 1 Article number 635.
Date published:
December 1, 2022
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Terri Lyddon,
Marc Johnson.
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Publisher Correction: Tracking cryptic SARS-CoV-2 lineages detected in NYC wastewater (Nature Communications, (2022), 13, 1, (635), 10.1038/s41467-022-28246-3). Smyth, Davida S., Trujillo, Monica, Gregory, Devon A., Cheung, Kristen, Gao, Anna, Graham, Maddie, Guan, Yue, Guldenpfennig, Caitlyn, Hoxie, Irene, Kannoly, Sherin, Kubota, Nanami, Lyddon, Terri D.,San, Kaung Myat,Markman, Michelle,Rushford, Clayton, Sompanya, Geena, Spagnolo, Fabrizio, Suarez, ReinierTeixeiro, Emma,Daniels, Mark,Johnson, Marc C.,Dennehy, John J.. Nature Communications; Volume 13, Issue 1, Article number 1836.
Date published:
December 1, 2022
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Marc Johnson,
Terri Lyddon.
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SARS-CoV-2 and other respiratory pathogens are detected in continuous air samples from congregate settings. Ramuta, Mitchell D, Newman, Christina M, Brakefield, Savannah F, Stauss, Miranda R., Wiseman, Roger W., Kita-Yarbro, Amanda, O’Connor, Eli J., Dahal, Neeti,Lim, Ailam, Poulsen, Keith P., Safdar, Nasiaf, ,Marx, John A. Nature Communications; Volume 13, Issue 1.
Date published:
December 1, 2022
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Marc Johnson.
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An anti-diabetic drug targets NEET (CISD) proteins through destabilization of their [2Fe-2S] clusters. Marjault, Henri-Baptiste; Karmi, Ola; Zuo, Ke; Michaeli, Dorit; Eisenberg-Domovich, Yael; Rossetti, Giluilia; de Chassey, Benoit;Vonderscher, Jacky; Cabantchik, Ioav; Carloni, Paolo; Mittler, Ron; Livnah, Oded; Meldrum, Eric; Nechushtai, Rachel. Communications Biology; Volume 5, Issue 1.
Date published:
December 1, 2022
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Ron Mittler.
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Evaluating α-galactosylceramide as an adjuvant for live attenuated influenza vaccines in pigs. Artiaga B L, Morozov I, Ransburgh R, Kwon T, Balaraman V, Indran S, Madrid D M C, Gu W, Henningson J, Ma W, Richt J A, Driver J P. Animal Diseases; Volume 2, Issue 1.
Date published:
December 1, 2022
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Melany Madrid,
John Driver.
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Extraction of Gene Regulatory Relation Using BioBERT. Essien C, He F, Hannink M, Popescu M, Xu D. Proceedings - 2022 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2022; Pages 3351 - 3355.
Date published:
December 1, 2022
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Clement Essien,
Fei He,
,
Dong Xu.
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A novel Synthetic phenotype association study approach reveals the landscape of association for genomic variants and phenotypes. Skrabisova M, Dietz N, Zeng S, Chan Y O, Wang J, Liu Y, Biova J, Joshi T, Bilyeu K D. Journal of Advanced Research; Volume 42, Pages 117 - 133.
Date published:
December 1, 2022
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Yen On Chan,
Trupti Joshi.
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Extracellular matrix: Brick and mortar in the skeletal muscle stem cell niche. Schuler S C, Liu Y, Dumontier S, Grandbois M, Le Moal E, Cornelison D D W, Bentzinger F C. Frontiers in Cell and Developmental Biology; Volume 10.
Date published:
November 29, 2022
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D Cornelison.
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An RNA aptamer that shifts the reduction potential of metabolic cofactors. Samuelian J S, Gremminger T J, Song Z, Poudyal R R, Li J, Zhou Y, Staller S A, Carballo J A, Roychowdhury-Saha M, Chen S, Burke D H, Heng X. Nature Chemical Biology; Volume 18, Issue 11, Pages 1263 - 1269.
Date published:
November 1, 2022
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Donald Burke-Agüero.
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Evaluating EcxR for Its Possible Role in Ehrlichia chaffeensis Gene Regulation. Liu H, Knox C, Jakkula L, Wang Y, Peddireddi L, Ganta R R. International Journal of Molecular Sciences; Volume 23, Issue 21.
Date published:
November 1, 2022
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Huitao Liu,
Roman Ganta.
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Mapping Maize Mutants Using Bulked-Segregant Analysis and Next-Generation Sequencing. Best N B, Mcsteen P. Current Protocols; Volume 2, Issue 11.
Date published:
November 1, 2022
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Paula McSteen.
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High-resolution ribosome profiling reveals translational selectivity for transcripts in bovine preimplantation embryo development. Zhu L, Zhou T, Iyyappan R, Ming H, Dvoran M, Wang Y, Chan Q, Roberts R M, Susor A, Jiang Z. Development (Cambridge); Volume 149, Issue 21.
Date published:
November 1, 2022
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Comparison of oseltamivir and α-galactosylceramide for reducing disease and transmission in pigs infected with 2009 H1N1 pandemic influenza virus. Madrid D M C, Gu W, Artiaga B L, Yang G, Loeb J, Hawkins I K, Castleman W L, Lednicky J A, Richt J A, Driver J P. Frontiers in Veterinary Science; Volume 9.
Date published:
October 20, 2022
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Melany Madrid,
John Driver.
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Small molecule inhibition of mitochondrial LonP1 protease by allosteric blockade of ATP -binding and -hydrolysis. J. Lee, A. K. Pandey, S. Venkatesh, J. Thilagavathi, T. Honda, K. Singh and C. K. Suzuki. J. Biol Chem; 298: 101719.
Date published:
October 19, 2022
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Kamlendra Singh.
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Omicron SARS-CoV-2 variant: Unique features and their impact on pre-existing antibodies. S. R. Kannan, A. N. Spratt, K. Sharma, H. S. Chand, S. N. Byrareddy and K. Singh . Autoimmun; 126, 102779.
Date published:
October 19, 2022
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Kamlendra Singh.
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Molecular dynamic study of SARS-CoV-2 with various S protein mutations and their effect on thermodynamic properties. M. Abdalla, W. Ali Eltayb, A. A. El-Arabey, K. Singh and X. Jiang (2021). . Comput. Biol. Med; 141:105025..
Date published:
October 19, 2022
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Kamlendra Singh.
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Continued Complexity of Mutations in Omicron Sublineages. Spratt A N, Kannan S R, Sharma K, Sachdev S, Kandasamy S L, Sonnerborg A, Lorson C L, Singh K. Biomedicines 2022; 10, 2593..
Date published:
October 16, 2022
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Shrikesh (Rick) Sachdev,
Shree Lekha Kandasamy,
Christian Lorson,
Kamlendra Singh.
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EphA1 receptor tyrosine kinase is localized to the nucleus in rhabdomyosarcoma from multiple species. LaCombe R, Cecchini A, Seibert M, Cornelison DDW. Biology open; Volume 11, Issue 10.
Date published:
October 15, 2022
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D Cornelison.
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Mutations in the monkeypox virus replication complex: Potential contributing factors to the 2022 outbreak. Kannan S R, Sachdev S, Reddy A S, Kandasamy S L, Byrareddy S N, Lorson C L, Singh K. Autoimmunity 2022; Volume 133.
Date published:
October 14, 2022
Featured in this article:
Shrikesh (Rick) Sachdev,
Shree Lekha Kandasamy,
Christian Lorson,
Kamlendra Singh.
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Zinc finger protein ZPR1: promising survival motor neuron protein-dependent modifier for the rescue of spinal muscular atrophy. Cuartas J, Gangwani L. Neural Regeneration Research; Volume 17, Issue 10, Pages 2225 - 2227.
Date published:
October 1, 2022
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Laxman Gangwani.
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Class I TCP transcription factor AtTCP8 modulates key brassinosteroid-responsive genes. Spears B J, McInturf Sam A, Collins C, Chlebowski M, Cseke L J, Su J, Mendoza-Cozatl D G, Gassmann W. Plant Physiology; Volume 190, Issue 2, Pages 1457 - 1473.
Date published:
October 1, 2022
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Leland Cseke,
Jianbin Su,
David Mendoza-Cózatl,
Walter Gassmann.
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Prostanoid receptors in hyperfiltration-mediated glomerular injury: Novel agonists and antagonists reveal opposing roles for EP2 and EP4 receptors. Srivastava T, Garola R E, Zhou J, Boinpelly V C, Priya L, Ali M F, Rezaiekhaligh M H, Heruth D P, Novak J, Alon U S, Joshi T, Jiang Y, McCarthy E T, Savin V J, Johnson M L, Sharma R, Sharma Mukut. FASEB Journal; Volume 36, Issue 10.
Date published:
October 1, 2022
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Trupti Joshi,
Yuexu Jiang.
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Mutation in senataxin alters the mechanism of R-loop resolution in amyotrophic lateral sclerosis 4. Kannan A, Cuartas J, Gangwani P, Branzei D, Gangwani L. Brain : a journal of neurology; Volume 145, Issue 9, Pages 3072 - 3094.
Date published:
September 14, 2022
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Laxman Gangwani.
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FASTAptameR 2.0: A web tool for combinatorial sequence selections. Kramer S T, Gruenke P R, Alam K K, Xu D, Burke D H. Molecular Therapy - Nucleic Acids; Volume 29, Pages 862 - 870.
Date published:
September 13, 2022
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Skyler Kramer,
Dong Xu,
Donald Burke-Agüero.
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Tuft Cells Are Present in Submandibular Glands Across Species. Tavares dos Santos H, Nam K, Maslow F, Small T, Galloway T, Dooley L, Tassone P, Zitsch R, Weisman G, Baker O. Journal of Histochemistry and Cytochemistry; .
Date published:
August 21, 2022
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Gary Weisman,
Olga Baker,
Harim Tavares dos Santos,
Kihoon Nam,
Frank Maslow,
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Back From the Dead: The Atypical Kinase Activity of a Pseudokinase Regulator of Cation Fluxes During Inducible Immunity. Brauer E K, Ahsan N, Popescu G V, Thelen J J, Popescu S C. Frontiers in Plant Science; Volume 13.
Date published:
August 11, 2022
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Jay Thelen.
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Molecular, cellular, and developmental foundations of grass diversity. McSteen, Paula; Kellogg, Elizabeth A.. Science; Volume 377, Issue 6606, Pages 599 - 602.
Date published:
August 5, 2022
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Paula McSteen.
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Exposure of white-tailed deer in North America to influenza D virus. Guan M, Jacobson O, Sarafianos G, Baroch J, Deliberto T J, Wan X. Virology; Volume 573, Pages 111 - 117.
Date published:
August 1, 2022
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Minhui Guan,
,
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XiuFeng “Henry” Wan.
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Epigenetic Regulation of Cancer Immune Cells. Avella D M, Radhakrishnana V, Kanve S N, Manjunath Y, Li G, Kimchi E T, Staveley-O’Carroll K F, Warren W C, Kaifi J T, Mitchem J B. Seminars in Cancer Biology; Volume 83, Pages 377 - 383.
Date published:
August 1, 2022
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Wes Warren.
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Identification and quantification of bioactive compounds suppressing SARS-CoV-2 signals in wastewater-based epidemiology surveillance. bayati M, Hsieh H, Hsu S, Li C, Rogers E, belenchia A, Zemmer S, Blanc T, LePage C, Klutts J, Reynolds M, Semkiw E, Johnson H, Foley T, Wieberg C, Wenzel J, Lyddon T, LePique M, Rushford C, Salcedo B, Young K, Graham M, Suarez R, Ford A, Lei Z, Sumner L, Mooney B, Wei X, Greenlief M, Johnson M, Lin C. Water Research; Volume 221.
Date published:
August 1, 2022
Featured in this article:
Terri Lyddon,
Clayton Rushford,
Reinier Suarez,
Zhentian Lei,
Lloyd Sumner,
Brian Mooney,
,
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Marc Johnson.
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Aptamers Targeting Hallmark Proteins of Neurodegeneration. Mollasalehi, Niloufar, Francois-Moutal, Liberty, Porciani, David,Burke, Donald H., Khanna, May. Nucleic Acid Therapeutics; Volume 32, Issue 4, Pages 235 - 250.
Date published:
August 1, 2022
Featured in this article:
Donald Burke-Agüero,
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Long-Term Effects of Developmental Exposure to Oxycodone on Gut Microbiota and Relationship to Adult Behaviors and Metabolism. Lyu, Zhen, Schmidt, Robert R., Martin Rachel E., Green, Madison T, Kinkade, Jessica A, Mao, Jiude, Bivens, Nathan, Trupti, Joshi, Rosenfeld, Cheryl S.. mSystems; Volume 7, Issue 4.
Date published:
August 1, 2022
Featured in this article:
Nathan Bivens,
Jessica Kinkade,
Trupti Joshi,
Zhen Lyu.
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Aboveground plant-to-plant electrical signaling mediates network acquired acclimation. Szechyńska-Hebda, Magdalena; Lewandowska, Maria; Witoń, Damian; Fichman, Yosef; Mittler, Ron; Karpiński, Stanisław M. Plant Cell; Volume 34, Issue 8, Pages 3047 - 3065.
Date published:
August 1, 2022
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Ron Mittler.
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NMR and Metabolomics—A Roadmap for the Future. Wishart D S, Cheng L L, Copie V, Edison A S, Eghbalnia H R, Hock J C, Gouveia G J, Pathmasiri W, Powers R, Schock T B, Sumner L W, Uchimiya M. Metabolites; Volume 12, Issue 8.
Date published:
August 1, 2022
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Lloyd Sumner.
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NMR and Metabolomics—A Roadmap for the Future. Wishart, David S; Cheng, Leo L.; Copié, Valérie, Edison, Arthur S.; Edison, Arthur S.; Hoch, Jeffrey C.; Gouveia, Goncalo J.; Pathmasiri, Wimal; Powers, Robert; Schock, Tracey B.; Sumner, Lloyd W.; Uchimiya, Mario. Metabolites ; Volume 12, Issue 8.
Date published:
August 1, 2022
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Lloyd Sumner.
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Linkage analysis and residual heterozygotes derived near isogenic lines reveals a novel protein quantitative trait loci from a Glycine soja accession. Yang, Yia,, La,Thang C, Gillman, Jason D, Lyu, Zhen, Joshi, Trupti, Usovsky, Mariola, Song, Quijian, Scaboo, Andrew. Frontiers in Plant Science; Volume 13.
Date published:
July 29, 2022
Featured in this article:
Zhen Lyu,
Trupti Joshi.
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The role of BMP4 signaling in trophoblast emergence from pluripotency. Roberts R M, Ezashi T, Temple J, Owen J, Soncin F, Parast M. Cellular and Molecular Life Sciences; Volume 79, Issue 8.
Date published:
July 25, 2022
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Toshihiko Ezashi.
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Switchgrass Metabolomics Reveals Striking Genotypic and Developmental Differences in Specialized Metabolic Phenotypes. Li X, Sarma S, Sumner L, Jones D, Last R. Journal of Agricultural and Food Chemistry; Volume 70, Issue 26, Pages 8010 - 8023.
Date published:
July 6, 2022
Featured in this article:
Lloyd Sumner.
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A single-cell analysis of thymopoiesis and thymic iNKT cell development in pigs. Gu, Weihong, Madrid, Darling Melany C., Joyce, Sebastian, Driver, John P.. Cell Reports; Volume 40, Issue 1.
Date published:
July 5, 2022
Featured in this article:
John Driver.
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A label free, signal off electrochemical aptasensor for amphetamine detection. Shoni, Shringika ; Jain, Utkarsh; Bruke, Donald H. , Chauhan, Nidhi. Surfaces and Interfaces; Article number 102023.
Date published:
July 1, 2022
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Donald Burke-Agüero.
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AvrRps4 effector family processing and recognition in lettuce. nguyen, Quang-Minh; Iswanto, Arya Bagus Boedi; Son, Geon Hui, Vuong, Uyen Thi ; lee, Jihyun ; Kang,Jin-Ho; Gassmann, Walter, Kim, Sang Hee. Molecular Plant Pathology; .
Date published:
July 1, 2022
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Walter Gassmann.
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Evolution in response to climate in the native and introduced ranges of a globally distributed plant. Innes, Simon G; Santangelo, James S., Kooyers, Nicholas J, Olsen, Kenneth M., Johnson, Marc T. J. Evolution; .
Date published:
July 1, 2022
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Marc Johnson.
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Development of Nanomaterial-Modified Impedimetric Aptasensor—A Single-Step Strategy for 3,4-Methylenedioxymethylamphetamine Detection. Soni, Shringika, Jain, Utkarsh, Burke, Donald H, Chauhan, Nidhi. Biosensors; Volume 12, Issue 7.
Date published:
July 1, 2022
Featured in this article:
Donald Burke-Agüero.
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Differential regulation of flower transpiration during abiotic stress in annual plants. Sinha, Ranjita, Zandalians, Sara I., Fichman, Yosef, Sen, Sidharth, Zeng,Shuai, Gomez-Cadenas, Aurelio, Joshi, Trupti, Fritschi, Felix B, Mittler, Ron. New Phytologist; Volume 235, Issue 2, Pages 611 - 629.
Date published:
July 1, 2022
Featured in this article:
Ron Mittler,
Trupti Joshi.
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Extracellular ATP plays an important role in systemic wound response activation. Myers, Ronald J; Fichman, Yosef; Stacey, Gary; Mittler, Ron. Plant Physiology; Volume 189, Issue 3, Pages 1314 - 1325.
Date published:
July 1, 2022
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Gary Stacey,
,
Ronald Jr. Myers,
Ron Mittler.
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Assessing Anti-Inflammatory Activities and Compounds in Switchgrass (Panicum virgatum). Ho K, Efrat N, Schreiber K, Vo P, DeCanha M, Van Staden A, Payne B, Oosthuizen C, Twilley D, Lei Z, Sumner L, Brown C. Agriculture (Switzerland); Volume 12, Issue 7.
Date published:
June 28, 2022
Featured in this article:
Lloyd Sumner,
Zhentian Lei.
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R-loop Mediated DNA Damage and Impaired DNA Repair in Spinal Muscular Atrophy. Cuartas J, Gangwani L. Frontiers in Cellular Neuroscience; Volume 16.
Date published:
June 16, 2022
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Laxman Gangwani.
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Iron Availability within the Leaf Vasculature Determines the Magnitude of Iron Deficiency Responses in Source and Sink Tissues in Arabidopsis. Nguyen, Nga T. ;Khan, Mather A. ;Castro-Guerrero, Norma A. ;Chia, Ju-Chenb;Vatamaniuk, Olena K.b;Mari, Stephanec;Jurisson, Silvia S. ;Mendoza-Cozatl, David G. Plant & cell physiology; Volume 63, Issue 6, Pages 829 - 841.
Date published:
June 15, 2022
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David Mendoza-Cózatl.
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Influenza Virus Infections in Polarized Cells. Praena B and Wan X. Viruses; Volume 14(6).
Date published:
June 15, 2022
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,
XiuFeng “Henry” Wan.
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Flow cytometry panels for immunophenotyping dairy cattle peripheral blood leukocytes. Casaro S., Marrero M.G., Madrid D.M.C, Prim J.G. , Nelson C.D. , Galvano K.N. , Laporta J., Driver J.P.. Veterinary Immunology and Immunopathology; Volume 248 Article number 110417.
Date published:
June 1, 2022
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John Driver.
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Early Dry Eye Disease Onset in a NOD.H-2h4 Mouse Model of Sjögren’s Syndrome. Lili L, Jasmer K, Camden J M, Woods L T, Martin A L, Yang Y, Layton M, Petris M J, Baker O J, Weisman G A, Petris C K. Investigative Ophthalmology & Visual Science; Vol.63, 18.
Date published:
June 1, 2022
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Kimberly Jasmer,
Jean Camden,
Lucas Woods,
Michael Petris,
Olga Baker,
Gary Weisman.
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Epistatic interaction between Rhg1-a and Rhg2 in PI 90763 confers resistance to virulent soybean cyst nematode populations. Basnet, Pawan, Meinhardt, Clinton G., Usovsky, Mariola, Gillman, Jason, D, Joshi Trupti, Song, Quijian, Diers, Brian, Mitchum, Melissa G., Scaboo, Andrew M. Theoretical and Applied Genetics; Volume 135, Issue 6, Pages 2025 - 2039.
Date published:
June 1, 2022
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Trupti Joshi.
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Pleiotropic and nonredundant effects of an auxin importer in Setaria and maize. Zhu, Chuanmei; Box, Matthew S., Thiruppathi, Dhineshkumar; Hu, Hao; Yu, Yunqing; Martin, Callista; Doust, Andrew N; McSteen, Paula; Kellogg, Elizabeth A.. Plant Physiology; Volume 189, Issue 2, Pages 715 - 734.
Date published:
June 1, 2022
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Paula McSteen.
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The product of BMP-directed differentiation protocols for human primed pluripotent stem cells is placental trophoblast and not amnion. Seetharam A S, Vu H T H, Choi S, Khan T, Sheridan M A, Ezashi T, Roberts M R, Tuteja G. Stem Cell Reports; .
Date published:
May 19, 2022
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Sehee Choi,
,
Toshihiko Ezashi,
.
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Complex Mutation Pattern of Omicron BA.2: Evading Antibodies without Losing Receptor Interactions. Kannan S R, Spratt A N, Sharma K, Goyal R, Sonnerborg A, Apparsundaram S, Lorson C L, Byrareddy S, Singh K. International Journal of Molecular Sciences; .
Date published:
May 16, 2022
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,
Christian Lorson,
Kamlendra Singh.
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Author Correction: scGNN is a novel graph neural network framework for single-cell RNA-Seq analyses (Nature Communications, (2021), 12, 1, (1882), 10.1038/s41467-021-22197-x). Wang J, Ma A, Chang Y, Gong J, Jiang Y, Qi R, Wang C, Fu H, Ma Q, Xu D. Nature Communications; Volume 13, Issue 1.
Date published:
May 4, 2022
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Dong Xu,
Yuexu Jiang.
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Skeletal Muscle Injury is Sufficient for Angiogenesis but Myofiber Regeneration is Required for Restoring Microvascular Integrity. Jacobsen, Nicole L; Cornelison D.D.W. ;Segal, Steven S.. FASEB journal : official publication of the Federation of American Societies for Experimental Biology; Volume 36.
Date published:
May 1, 2022
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D Cornelison.
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Which Comes First: Angiogenesis or Myogenesis Following Punch Biopsy Injury?. Morton, Aaron B; Jacobsen, Nicole L; Cornelison D. FASEB journal : official publication of the Federation of American Societies for Experimental Biology; Volume 36.
Date published:
May 1, 2022
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D Cornelison.
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Targeted mutagenesis in Anaplasma marginale to define virulence and vaccine development against bovine anaplasmosis. Hove P, Madesh S, Nair A, Jaworski D, Liu H, Ferm J, Kleinhenz M D, Highland M A, Curtis A K, Coetzee J F, Noh S M, Wang Y, Genda D, Ganta R R. PLoS Pathogens; Volume 18, Issue 5.
Date published:
May 1, 2022
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,
Huitao Liu,
Jonathan Ferm,
Dominica Genda,
Roman Ganta.
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Candidate Genes Modulating Reproductive Timing in Elite US Soybean Lines Identified in Soybean Alleles of Arabidopsis Flowering Orthologs With Divergent Latitude Distribution. Dietz, Nicholas, Chan, Yen On, Scaboo, Andrew, Graef, George, Hyten, David, Happ, Mary, Diers, Brian, Lorenz, Aaron, Wang, Dechun, Joshi, Trupti, Bilyeu, Kristin. Frontiers in Plant Science; Volume 13.
Date published:
April 29, 2022
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Trupti Joshi.
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Rice diterpenoid phytoalexins are involved in defence against parasitic nematodes and shape rhizosphere nematode communities. Desmedt W, Kudjordjie E N, Chavan S N, Zhang J, Li R, Yang B, Nicolaisen M, Mori M, Peters R J, Vanholme B, Vestergård M, Kyndt T. New Phytologist; Volume 235, Issue 3, Pages 1231 - 1245.
Date published:
April 23, 2022
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Bing Yang.
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Convergent evolution of polyploid genomes from across the eukaryotic tree of life. Hao Y, Fleming J, Petterson J, Lyons E, Edger P P, Pires C J, Thorne J L, Conant G C. G3: Genes|Genomes|Genetics; Volume 12, Issue 6.
Date published:
April 22, 2022
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Novel Compound Inhibitors of HIV-1NL4-3 Vpu. Robinson, Carolyn A., Lyddon, Terri D., Gil, Hwi Min, Evans, David T., Kuzmichev, Yury V., Richard, Jonathan., Finzi, Andrés, Welbourn, Sarah, Rasmussen, Lynn, ;Nebane, N Mirandam, Gupta, Vandana V., Ananthan, Sam. Viruses; Volume 14, Issue 415 .
Date published:
April 15, 2022
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Terri Lyddon,
Marc Johnson.
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The Ighmbp2D564Nmouse model is the first SMARD1 model to demonstrate respiratory defects. Smith, Caley E; Lorson, Monique A; Ricardez Hernandez, Sara M; Al Rawi, Zayd; Mao, Jiude; Marquez, Jose; Villalón, Eric; Keilholz, Amy N; Smith, Catherine L; Garro-Kacher, Mona O; Morcos, Toni; Davis, Daniel J; Bryda, Elizabeth C;Nichols, Nicole L; Lorson, Christian L. Human Molecular Genetics; Volume 31, Issue 8, Pages 1293 - 1307.
Date published:
April 15, 2022
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Christian Lorson,
Monique Lorson.
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Novel Naturally Occurring Dipeptides and Single-Stranded Oligonucleotide Act as Entry Inhibitors and Exhibit a Strong Synergistic Anti-HIV-1 Profile. Ceña-Diez R, Singh K, Spetz A & Sönnerborg A. Infectious Diseases and Therapy; .
Date published:
April 7, 2022
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Kamlendra Singh.
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A plant balancing act: Meshing new and existing metabolic pathways towards an optimized system. Angelovici R. , Kliebenstein D.. Current Opinion in Plant Biology; Volume 66.
Date published:
April 1, 2022
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Ruthie Angelovici.
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Recent trends and emerging strategies for aptasensing technologies for illicit drugs detection. Soni S., Jain U., Burke D.H. , Chauhan N.. Journal of Electroanalytical Chemistry; Volume 910.
Date published:
April 1, 2022
Featured in this article:
Donald Burke-Agüero.
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Arabidopsis thaliana CYCLIC NUCLEOTIDE-GATED CHANNEL2 mediates extracellular ATP signal transduction in root epidermis. Wang L.,Ning Y.a,Sun J., ,Wilkins K.A.,Matthus E.,McNelly R.E.,Dark A.,Rubio L.,Moeder W.,Yoshioka K.d,Véry A.-A.,Stacey G. Leblanc-Fournier N.,Legué V.,Moulia B.,Davies J.M.. New Phytologist; Volume 234, Issue 2, Pages 412 - 421.
Date published:
April 1, 2022
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Gary Stacey.
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Antigenic characterization of influenza and SARS-CoV-2 viruses. Wang Y, Tang C.Y., Xan X.F. . Analytical and Bioanalytical Chemistry; Volume 414, Issue 9, Pages 2841 - 2881.
Date published:
April 1, 2022
Featured in this article:
Yang Wang,
XiuFeng “Henry” Wan.
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Bioinformatics for plant and agricultural discoveries in the age of multiomics: A review and case study of maize nodal root growth under water deficit. Wang, Juexin, Sidharth, Sen, Zeng, Shuai, Jiang, Yuexu, Chan, Yen On, Lyu, Zhen, McCubbin, Tyler, Mertz, Rachel, Sharp, Robert E., Joshi, Trupti. Physiologia Plantarum; Volume 174, Issue 2 Article number e13672.
Date published:
April 1, 2022
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Trupti Joshi.
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Defects in meristem maintenance, cell division, and cytokinin signaling are early responses in the boron deficient maize mutant tassel-less1. Matthes, Michaela S., Darnell, Zoe, Best, Norman B., Guthrie, Katy, Robil, Janlo M., Amstutz, Jen, Durbak, Amanda, McSteen, Paula. Physiologia Plantarum; Volume 174, Issue 2.
Date published:
April 1, 2022
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Paula McSteen.
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Future of biomedical, agricultural, and biological systems research using domesticated animals. Spencer, Thomas E., Wells, Kevin D., Lee, Kiho, Telugu, Bhanu P., Hansen, Peter J.,Bartol, Frank F., Blomberg, Leann,Schook, Lawrence B., Dawson, Harry, Lunney, Joan K, Driver, John P, Davis, Teresa A. . Biology of Reproduction; Volume 106, Issue 4, Pages 629 - 638.
Date published:
April 1, 2022
Featured in this article:
John Driver.
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Leveraging Optimized Transcriptomic and Personalized Stem Cell Technologies to Better Understand Syncytialization Defects in Preeclampsia. Choi S, Khan T, Roberts M R, Schust D J. Frontiers in Genetics; Volume 13.
Date published:
March 30, 2022
Featured in this article:
Sehee Choi,
Teka Khan,
.
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Neural relational inference to learn long-range allosteric interactions in proteins from molecular dynamics simulations. Zhu J, Wang J, Han W, Xu D. Nature Communications; Volume 13, Issue 1.
Date published:
March 29, 2022
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,
Dong Xu.
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Neural relational inference to learn long-range allosteric interactions in proteins from molecular dynamics simulations. Zhu J, Wang J, Han W, Xu D. Nature Communications; Volume 13, Issue 1.
Date published:
March 29, 2022
Featured in this article:
Dong Xu.
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The adeno-associated virus 2 genome and Rep 68/78 proteins interact with cellular sites of DNA damage. Majumder, Kinjal, Pintel, David J., Joshi, Trupti, Lorson, Christian L., Kaifer, Kevin A., Burger, Lisa R., Shepherd, Phoenix, Wang, Juexin, Whittle, Fawn B., Boftsi, Maria. Human Molecular Genetics; Volume 31, Issue 6, Pages 985 - 998.
Date published:
March 15, 2022
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,
,
Christian Lorson,
Trupti Joshi.
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Tumorigenic circulating tumor cells from xenograft mouse models of non-metastatic NSCLC patients reveal distinct single cell heterogeneity and drug responses. Suvilesh K, Nussbaum Y, Radhakrishnan V, Manjunath Y, Avella D, Staveley-O’Carroll K, Kimchi E, Chaudhuri A, Shyu C, Li G, Pantel K, Warren, W. Molecular Cancer; Volume 21, Issue 1.
Date published:
March 12, 2022
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Wes Warren.
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Plant responses to multifactorial stress combination. Zandalinas S, Mittler R. New Phytologist; Volume 234, Issue 4, Pages 1161 - 1167.
Date published:
March 12, 2022
Featured in this article:
Ron Mittler.
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Cancer immunomodulation using bispecific aptamers. Thomas B.J. , Porciani D. , Burke D.H.. Molecular Therapy - Nucleic Acids; Volume 27, Pages 894 - 915.
Date published:
March 8, 2022
Featured in this article:
Donald Burke-Agüero,
Brian Thomas,
.
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Large-Scale Integrative Analysis of Soybean Transcriptome Using an Unsupervised Autoencoder Model. Su, Lingtao, Xu, Chunhui, Zeng, Shuai, Su, Li, Joshi, Trupti. Stacey, Gary, Xu, Dong. Frontiers in Plant Science; Volume 13 Article number 831204.
Date published:
March 3, 2022
Featured in this article:
Gary Stacey,
Trupti Joshi.
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Intrauterine Fetal Demise in the Third Trimester of Pregnancy Associated with Mild Infection with the SARS-CoV-2 Delta Variant Without Protection from Vaccination. Guan M., Johannesen E, Tang C.Y, Hsu A.L, Barnes C.L, Burman C.L, McElroy J.A, Wan X.F. Journal of Infectious Diseases; Volume 225, Issue 5, Pages 748 - 753.
Date published:
March 1, 2022
Featured in this article:
XiuFeng “Henry” Wan.
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OsSWEET11b, a potential sixth leaf blight susceptibility gene involved in sugar transport-dependent male fertility. Wu L, Eom J, Isoda R, Li C, Char S N, Luo D, Schepler-Luu V, Nakamura M, Yang B, Frommer W B. New Phytologist; Volume 234, Issue 3, Pages 975 - 989.
Date published:
February 24, 2022
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Si Nian Char,
Bing Yang.
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Selection and identification of an RNA aptamer that specifically binds the HIV-1 capsid lattice and inhibits viral replication. Gruenke P.R. , Aneja R. , Welbourn S. , Ukah O.B. , Sarafianos S.G. , Burke D.H. , Lange M.J.. Nucleic Acids Research; Volume 50, Issue 3, Pages 1701 - 1717.
Date published:
February 22, 2022
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Donald Burke-Agüero.
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Identification of Arabidopsis Protein Kinases That Harbor Functional Type 1 Peroxisomal Targeting Signals. Kataya A, Gautam N, Jamshed M, Muench D, Samuel M, Thelen J, Moorhead G. Frontiers in Cell and Developmental Biology; Volume 10.
Date published:
February 15, 2022
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Jay Thelen.
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Defining biological and biophysical properties of SARS-CoV-2 genetic material in wastewater. Robinson CA, Hsieh H-Y, Hsu S-Y, Wang Y, Salcedo BT, Belenchia A, Klutts J, Zemmer S, Reynolds M, Semkiw E, Foley T, Wan X, Wieberg CG, Wenzel J, Lin C-H, Johnson MC. Science of the Total Environment; 807:150786.
Date published:
February 10, 2022
Featured in this article:
XiuFeng “Henry” Wan,
Marc Johnson.
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RNALocate v2.0: An updated resource for RNA subcellular localization with increased coverage and annotation. Cui T., Dou Y, Tan P, Ni Z. , Liu T, Wang D, Huang Y. , Cai K,, Zhao X, Xu D., Li H, Wang D. Nucleic Acids Research; Volume 50, Issue D1, Pages D333 - D339.
Date published:
February 7, 2022
Featured in this article:
Dong Xu,
Duolin Wang.
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Discordant Genome Assemblies Drastically Alter the Interpretation of Single-Cell RNA Sequencing Data Which Can Be Mitigated by a Novel Integration Method. Potts H, Lemieux M, Rice E, Warren W, Choudhury R, Mommersteeg M. Cells; Volume 11, Issue 4.
Date published:
February 2, 2022
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Wes Warren.
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Specialized pro-resolving receptors are expressed in salivary glands with Sjögren’s syndrome. dos Santos , Nam K., Maslow F., Trump B., Baker O.J.. Annals of Diagnostic Pathology; Volume 56.
Date published:
February 1, 2022
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Harim Tavares dos Santos,
Kihoon Nam,
Frank Maslow.
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Glomerular Biomechanical Stress and Lipid Mediators during Cellular Changes Leading to Chronic Kidney Disease. Sharma M. , Singh V. , Sharma R. ,Koul A. , McCarthy E.T. , Savin V.J. , Joshi T. ,Srivastava T.. Biomedicines; Volume 10, Issue 2.
Date published:
February 1, 2022
Featured in this article:
Trupti Joshi.
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Carbon-11 Radiotracing Reveals Physiological and Metabolic Responses of Maize Grown under Different Regimes of Boron Treatment. Wilder S.L. , Scott S. , Waller S., Powell A., Benoit M., Guthrie J.M., Schueller M.J., Awale P., McSteen P., Matthes M.S., Ferrieri R.A.. Plants; Volume 11, Issue 3.
Date published:
February 1, 2022
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Paula McSteen.
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Root-to-shoot iron partitioning in Arabidopsis requires IRON-REGULATED TRANSPORTER1 (IRT1) protein but not its iron(II) transport function. Quintana J., Bernal M., Scholle M., Holländer-Czytko H., Nguyen N.T., Piotrowski M., Mendoza-Cózatl D.G., Haydon M.J., Krämer U.. Plant Journal; Volume 109, Issue 4, Pages 992 - 1013.
Date published:
February 1, 2022
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Nguyen Thao Thi,
David Mendoza-Cózatl.
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Connecting copper and cancer: from transition metal signalling to metalloplasia. Ge E.J. , Bush A.I., Casini A., Cobine P.A. , Cross J.R. , DeNicola G.M., Dou Q.P., Franz K.J., Gohil V.M. , Gupta S. , Kaler S.G. , Lutsenko S., Mittal V., Petris M.J., Polishchuk R,Ralle M., Schilsky M.L., Tonks N.K.,Vahdat L.T., Van Aelst L. Xi.D. , Yuan P., Brady D.C, Chang C.J.. Nature Reviews Cancer; Volume 22, Issue 2, Pages 102 - 113.
Date published:
February 1, 2022
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Michael Petris.
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Time-Dependent Proinflammatory Responses Shape Virus Interference during Coinfections of Influenza A Virus and Influenza D Virus. Guan M.,Blackmon S.,Olivier A.K.,Zhang X.Zhang X.,Liu L.Woolums A.,Crenshaw M.A.,Liao S.F., Webby R.,,Epperson W.,Wan X.-F.. Viruses; Volume 14, Issue 2.
Date published:
February 1, 2022
Featured in this article:
XiuFeng “Henry” Wan.
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Protein Kinase Signaling Pathways in Plant-Colletotrichum Interaction. Jiang L. , Zhang S., Su J. , Peck S.C., Luo L. . Frontiers in Plant Science; Volume 12.
Date published:
January 20, 2022
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Scott Peck.
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Deletion of Specific Conserved Motifs from the N-Terminal Domain of αB-Crystallin Results in the Activation of Chaperone Functions. Mahalingam S, Shankar G, Mooney B P, Singh K, Santhoshkumar P, Sharma K K. International Journal of Molecular Sciences; .
Date published:
January 20, 2022
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Brian Mooney,
Kamlendra Singh.
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Eph/Ephrin-Based Protein Complexes: The Importance of cis Interactions in Guiding Cellular Processes. Cecchini A. , Cornelison D.D.W.. Frontiers in Molecular Biosciences; Volume 8.
Date published:
January 13, 2022
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D Cornelison.
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Trans cohort metabolic reprogramming towards glutaminolysis in long-term successfully treated HIV-infection. Mikaeloff F, Svensson A S, Ikomey G M, Kirshnan S, Sperk M, Gupta S, Magdaleno, G D V, Escos A, Lyonga E, Okomo M C, Tagne C T, Babu H, Lorson C L, Vegvari A, Banerjea A C, Kele J, Hanna L E, Singh K, de Magalhaes J P, Benfeitas R, Neogi U. Communications Biology; Volume 5, Issue 1.
Date published:
January 11, 2022
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Christian Lorson,
Kamlendra Singh.
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NP-MRD: The Natural Products Magnetic Resonance Database. Wishart D.S.,Sayeeda Z.,Budinski Z.,Guo A.,Lee B.L.,Berjanskii M.,Rout M.,Peters H.,Dizon R.,Mah R.,Torres-Calzada C.,Hiebert-Giesbrecht M. Varshavi D., Varshavi D.,Oler E.,Allen D.,Cao X.,Gautam V.,Maras A.,Poynton E.F.,Tavangar P.,Yang V.,Van Santen J.A.,Ghosh R.,Sarma S. ,Knutson E.,Sullivan V.,Jystad A.M.,Renslow R.,Sumner L.W.,Linington R.G.,Cort J.R.. Nucleic Acids Research; Volume 50, Issue D1, Pages D665 - D677.
Date published:
January 7, 2022
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Lloyd Sumner.
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Integrative proteomics and phosphoproteomics reveals phosphorylation networks involved in the maintenance and expression of embryogenic competence in sugarcane callus. Xavier L.R., Almeida F.A. , Pinto V.B., Passamani L.Z., Santa-Catarina C., de Souza Filho G.A., Mooney B.P., Thelen J.J., Silveira V.. Journal of Plant Physiology; Volume 268.
Date published:
January 1, 2022
Featured in this article:
Brian Mooney,
Jay Thelen.
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Multiomics approach reveals a role of translational machinery in shaping maize kernel amino acid composition. Shrestha V. , Yobi A. , Slaten M.L. ,Chan Y.O. , Holden S. , Gyawali A. , Flint-Garcia S. , Lipka A.E. ,Angelovici R.. Plant Physiology; Volume 188, Issue 1, Pages 111 - 133 .
Date published:
January 1, 2022
Featured in this article:
Abou Yobi,
Ruthie Angelovici.
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Myofibre injury induces capillary disruption and regeneration of disorganized microvascular networks. Jacobsen N.L. , Norton C.E. ,Shaw R.L. ,Cornelison D.D.W. ,Segal S.S.. Journal of Physiology; Volume 600, Issue 1, Pages 41 - 601.
Date published:
January 1, 2022
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D Cornelison.
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Single-cell RNA sequencing to characterize the response of pancreatic cancer to anti-PD-1 immunotherapy. Zhou J., Jiang Y., Huang Y. ,Wang Q. ,Kaifi J.T. , Kimchi E.T. ,Chabu C.Y. ,Liu Z. , Joshi T. , Li G.. Translational Oncology; Volume 15, Issue 1.
Date published:
January 1, 2022
Featured in this article:
,
Trupti Joshi.
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Plant Growth-promoting Effects of Viable and Dead Spores of Bacillus pumilus TUAT1 on Setaria viridis. Agake S.-I.Plucani do Amaral F.,Yamada T., Sekimoto H.,Stacey G.,Yokoyama T.,Ohkama-Ohtsu N.. Microbes and environments; Volume 37, Issue 1.
Date published:
January 1, 2022
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Gary Stacey.
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An Improved Topology Prediction of Alpha-Helical Transmembrane Protein Based on Deep Multi-Scale Convolutional Neural Network. Yang Y., Yu J, Liu Z, Wang X, Wang H, Ma Z, Xu D.. IEEE/ACM Transactions on Computational Biology and Bioinformatics; Volume 19, Issue 1, Pages 295 - 304.
Date published:
January 1, 2022
Featured in this article:
Dong Xu,
Yang Wang.
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Assessing deep learning methods in cis-regulatory motif finding based on genomic sequencing data. Briefings in Bioinformatics. Volume 23, Issue 1; Zhang S., Ma A. , Zhao J, Xu D. , Ma Q, Wang Y, .
Date published:
January 1, 2022
Featured in this article:
Yang Wang,
Dong Xu.
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Overexpression of pea α-carboxyltransferase in Arabidopsis and camelina increases fatty acid synthesis leading to improved seed oil content. Wang M, Garneau M, Poudel A, Lamm D, Koo A, Bates P, Thelen J. Plant Journal; .
Date published:
January 1, 2022
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Jay Thelen.
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Text Mining Enhancements for Image Recognition of Gene Names and Gene Relations. Ren Y, He F, Qu J, Li Y, Thompson J, Hannink M, Popescu M, Xu D. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Volume 13483 LNBI, Pages 132 - 142.
Date published:
January 1, 2022
Featured in this article:
Fei He,
,
Dong Xu.
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Modulating the Mechanochemistry of Peptide-Polymer Hybrids for Precision Tissue Repair. Spencer, Paulette a; Misra, Anil b; Ye, Qiang c; Picking, William D. d; Boone, Kyle c; Kamathewatta, Nilan c; Song, Linyong c; Sarikaya, Rizacan c; Purk, John H. e; Tamerler, Candan a. Encyclopedia of Materials: Plastics and Polymers; Volume 1-4, Pages 397 - 406.
Date published:
January 1, 2022
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William Picking.
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2021
Defining the optimal dose and therapeutic window in SMA with respiratory distress type I model mice, FVB/NJ-Ighmpb2 nmd-2J. Shababi M., Smith C.E. , Ricardez Hernandez S.M. , Marquez J. , Al Rawi Z. , Villalón E., Farris K.D. , Garro-Kacher M.O. , Lorson C.L.. Molecular Therapy - Methods and Clinical Development; Volume 23, Pages 23 - 32.
Date published:
December 10, 2021
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Christian Lorson.
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Identifying Genes and Their Interactions from Pathway Figures and Text in Biomedical Articles. He F. , Thompson J. , Mao Z. , Ren Y., Nussbaum Y. , Kholod O. , Shin D. , Hannink M., Popescu M., Xu D.. Proceedings - 2021 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2021; Pages 398-405 .
Date published:
December 9, 2021
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Dong Xu.
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Drug repositioning and subgroup discovery for precision medicine implementation in triple negative breast cancer. Al-Taie Z.,Hannink M.,Mitchem J., Papageorgiou C.,Shyu C.-R.. Cancers; Volume 13, Issue 24 .
Date published:
December 2, 2021
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Structure of the mature Rous sarcoma virus lattice reveals a role for IP6 in the formation of the capsid hexamer. Obr M, Ricana CL, Nikulin N, Feathers J-PR, Klanschnig M, Thader A, Johnson MC, Vogt VM, Schur FKM, Dick RA. Nature Communications; 12(1):3226.
Date published:
December 1, 2021
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Marc Johnson.
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Genetic variation among 481 diverse soybean accessions, inferred from genomic re-sequencing. Valliyodan B, Brown AV, Wang J, Patil G, Liu Y, Otyama PI, Nelson RT, Vuong T, Song Q, Musket TA, Wagner R, Marri P, Reddy S, Sessions A, Wu X, Grant D, Bayer PE, Roorkiwal M, Varshney RK, Liu X, Edwards D, Xu D, Joshi T, Cannon SB, Nguyen HT. Scientific Data; 8(1):50.
Date published:
December 1, 2021
Featured in this article:
Dong Xu,
Trupti Joshi.
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Developmental exposure to silver nanoparticles leads to long term gut dysbiosis and neurobehavioral alterations. Lyu Z, Ghoshdastidar S, Rekha KR, Suresh D, Mao J, Bivens N, Kannan R, Joshi T, Rosenfeld CS, Upendran A. Scientific Reports; 11(1):6558.
Date published:
December 1, 2021
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Trupti Joshi.
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A mouse model of prenatal exposure to Interleukin-6 to study the developmental origin of health and disease. Srivastava T, Joshi T, Heruth DP, Rezaiekhaligh MH, Garola RE, Zhou J, Boinpelly VS, Ali MF, Alon US, Sharma M, Vanden Heuvel GB, Mahajan P, Priya L, Jiang Y, McCarthy ET, Savin VJ, Sharma R, Sharma M. Scientific Reports; 11(1):13260.
Date published:
December 1, 2021
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Trupti Joshi.
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S-acylation of P2K1 mediates extracellular ATP-induced immune signaling in Arabidopsis. Chen D, Hao F, Mu H, Ahsan N, Thelen JJ, Stacey G. Nature Communications; 12(1):2750.
Date published:
December 1, 2021
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Jay Thelen,
Gary Stacey.
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Chromosome-scale genome assembly of the sea louse Caligus rogercresseyi by SMRT sequencing and Hi-C analysis. Gallardo-Escárate C, Valenzuela-Muñoz V, Nuñez-Acuña G, Valenzuela-Miranda D, Gonçalves AT, Escobar-Sepulveda H, Liachko I, Nelson B, Roberts S, Warren W. Scientific Data; 8(1):60.
Date published:
December 1, 2021
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Wes Warren.
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A chromosome-level genome of Astyanax mexicanus surface fish for comparing population-specific genetic differences contributing to trait evolution. Warren WC, Boggs TE, Borowsky R, Carlson BM, Ferrufino E, Gross JB, Hillier LD, Hu Z, Keene AC, Kenzior A, Kowalko JE, Tomlinson C, Kremitzki M, Lemieux ME, Graves-Lindsay T, McGaugh SE, Miller JT, Mommersteeg MTM, Moran RL, Peuß R, Rice ES, Riddle MR, Sifuentes-Romero I, Stanhope BA, Tabin CJ, Thakur S, Yamamoto Y, Rohner N. Nature Communications; 12(1):1447.
Date published:
December 1, 2021
Featured in this article:
Wes Warren.
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The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control. Olafson PU, Aksoy S, Attardo GM, Buckmeier G, Chen X, Coates CJ, Davis M, Dykema J, Emrich SJ, Friedrich M, Holmes CJ, Ioannidis P, Jansen EN, Jennings EC, Lawson D, Martinson EO, Maslen GL, Meisel RP, Murphy TD, Nayduch D, Nelson DR, Oyen KJ, Raszick TJ, Ribeiro JMC, Robertson HM, Rosendale AJ, Sackton TB, Saelao P, Swiger SL, Sze S-H, Tarone AM, Taylor DB, Warren WC, Waterhouse RM, Weirauch MT, Werren JH, Wilson RK, Zdobnov EM, Benoit JB. BMC Biology; 19(1):41.
Date published:
December 1, 2021
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Wes Warren.
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Publisher Correction: The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control (BMC Biology, (2021), 19, 1, (41), 10.1186/s12915-021-00975-9). Olafson PU, Aksoy S, Attardo GM, Buckmeier G, Chen X, Coates CJ, Davis M, Dykema J, Emrich SJ, Friedrich M, Holmes CJ, Ioannidis P, Jansen EN, Jennings EC, Lawson D, Martinson EO, Maslen GL, Meisel RP, Murphy TD, Nayduch D, Nelson DR, Oyen KJ, Raszick TJ, Ribeiro JMC, Robertson HM, Rosendale AJ, Sackton TB, Saelao P, Swiger SL, Sze S-H, Tarone AM, Taylor DB, Warren WC, Waterhouse RM, Weirauch MT, Werren JH, Wilson RK, Zdobnov EM, Benoit JB. BMC Biology; 19(1):150.
Date published:
December 1, 2021
Featured in this article:
Wes Warren.
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Chromosome-length genome assembly and structural variations of the primal Basenji dog (Canis lupus familiaris) genome. Edwards RJ, Field MA, Ferguson JM, Dudchenko O, Keilwagen J, Rosen BD, Johnson GS, Rice ES, Hillier LD, Hammond JM, Towarnicki SG, Omer A, Khan R, Skvortsova K, Bogdanovic O, Zammit RA, Aiden EL, Warren WC, Ballard JWO. BMC Genomics; 22(1):188.
Date published:
December 1, 2021
Featured in this article:
Wes Warren.
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A domestic cat whole exome sequencing resource for trait discovery. Rodney AR, Buckley RM, Fulton RS, Fronick C, Richmond T, Helps CR, Pantke P, Trent DJ, Vernau KM, Munday JS, Lewin AC, Middleton R, Lyons LA, Warren WC. Scientific Reports; 11(1):7159.
Date published:
December 1, 2021
Featured in this article:
Wes Warren.
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Multi-omic analyses in Abyssinian cats with primary renal amyloid deposits. Genova F, Nonnis S, Maffioli E, Tedeschi G, Strillacci MG, Carisetti M, Sironi G, Cupaioli FA, Di Nanni N, Mezzelani A, Mosca E, Helps CR, Leegwater PAJ, Dorso L, Buckley RM, Aberdein D, Alves PC, Andersson AO, Barsh GS, Bellone RR, Bergström TF, Boyko AR, Brockman JA, Casal ML, Castelhano MG, Distl O, Dodman NH, Ellinwood NM, Fogle JE, Forman OP, Garrick DJ, Ginns EI, Haase B, Häggström J, Harvey RJ, Hasegawa D, Hernandez I, Hytönen MK, Kaukonen M, Kaelin CB, Kosho T, Leclerc E, Lear TL, Leeb T, Li RHL, Lohi H, Magnuson MA, Malik R, Mane SP, Munday JS, Murphy WJ, Pedersen NC, Peterson-Jones SM, Rothschild MF, Rusbridge C, Shapiro B, Stern JA, Swanson WF, Terio KA, Todhunter RJ, Warren WC, Wilcox EA, Wildschutte JH, Yu Y, Lyons LA, Longeri M. Scientific Reports; 11(1):8339.
Date published:
December 1, 2021
Featured in this article:
Wes Warren.
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Complete vertebrate mitogenomes reveal widespread repeats and gene duplications. Formenti G, Rhie A, Balacco J, Haase B, Mountcastle J, Fedrigo O, Brown S, Capodiferro MR, Al-Ajli FO, Ambrosini R, Houde P, Koren S, Oliver K, Smith M, Skelton J, Betteridge E, Dolucan J, Corton C, Bista I, Torrance J, Tracey A, Wood J, Uliano-Silva M, Howe K, McCarthy S, Winkler S, Kwak W, Korlach J, Fungtammasan A, Fordham D, Costa V, Mayes S, Chiara M, Horner DS, Myers E, Durbin R, Achilli A, Braun EL, Phillippy AM, Jarvis ED, Kirschel ANG, Digby A, Veale A, Bronikowski A, Murphy B, Robertson B, Baker C, Mazzoni C, Balakrishnan C, Lee C, Mead D, Teeling E, Aiden EL, Todd E, Eichler E, Naylor GJP, Zhang G, Smith J, Wolf J, Touchon J, Delmore K, Jakobsen K, Komoroske L, Wilkinson M, Genner M, Pšenička M, Fuxjager M, Stratton M, Liedvogel M, Gemmell N, Minias P, Dunn PO, Sudmant P, Morin P, Ayub Q, Kraus R, Vernes S, Smith S, Lama T, Edwards T, Smith T, Gilbert T, Marques-Bonet T, Einfeldt T, Venkatesh B, Johnson W, Warren W, Bukhman Y. Genome Biology; 22(1):120.
Date published:
December 1, 2021
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Wes Warren.
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New genotypes of Helicobacter Pylori VacA d-region identified from global strains. Soyfoo DM, Doomah YH, Xu D, Zhang C, Sang H-M, Liu Y-Y, Zhang G-X, Jiang J-X, Xu S-F. BMC Molecular and Cell Biology; 22(1):4.
Date published:
December 1, 2021
Featured in this article:
Dong Xu.
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DeePaN: deep patient graph convolutional network integrating clinico-genomic evidence to stratify lung cancers for immunotherapy. Fang C, Xu D, Su J, Dry JR, Linghu B. npj Digital Medicine; 4(1):14.
Date published:
December 1, 2021
Featured in this article:
Dong Xu.
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scGNN is a novel graph neural network framework for single-cell RNA-Seq analyses. Wang J, Ma A, Chang Y, Gong J, Jiang Y, Qi R, Wang C, Fu H, Ma Q, Xu D. Nature Communications; 12(1):1882.
Date published:
December 1, 2021
Featured in this article:
Dong Xu.
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Geographic distribution of the E1 family of genes and their effects on reproductive timing in soybean. Dietz N, Combs-Giroir R, Cooper G, Stacey M, Miranda C, Bilyeu K. BMC Plant Biology; 21(1):441.
Date published:
December 1, 2021
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Minviluz (Bing) Stacey.
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Modelling of gene loss propensity in the pangenomes of three Brassica species suggests different mechanisms between polyploids and diploids. Bayer P.E.,Scheben A.,Golicz A.A.,Yuan Y.,Faure S.c,Lee H.,Chawla H.S.,Anderson R.a,Bancroft I.,Raman H.,Lim Y.P.,Robbens S. Jiang L.,Liu S.,Barker M.S.,Schranz M.E.,Wang X.,King G.J.,Pires J.C.,Chalhoub B.,Snowdon R.J.,Batley J.,Edwards D.. Plant Biotechnology Journal; Volume 19, Issue 12, Pages 2488 - 2500.
Date published:
December 1, 2021
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Distinct C4 sub-types and C3 bundle sheath isolation in the Paniceae grasses. https://www.scopus.com/record/display.uri?eid=2-s2.0-85121838832&origin=resultslist&sort=plf-f&featureToggles=FEATURE_NEW_DOC_DETAILS_EXPORT:1. Plant Direct; Volume 5, Issue 12.
Date published:
December 1, 2021
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Is SARS-CoV-2 Infection a Risk Factor for Early Pregnancy Loss? ACE2 and TMPRSS2 Coexpression and Persistent Replicative Infection in Primitive Trophoblast. Zhou J, Choi S, Liu H, Zhang J, Tian Y, Edlow A G, Ezashi T, Roberts R M, Ma W, Schust D J. Journal of Infectious Diseases; Volume 224, Pages S660 - S669.
Date published:
December 1, 2021
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Sehee Choi,
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Toshihiko Ezashi,
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Disrupting CISD2 function in cancer cells primarily impacts mitochondrial labile iron levels and triggers TXNIP expression. Karmi O., Sohn Y.-S., Zandalinas S.I., Rowland L., King S.D., Nechushtai R., Mittler R.. Free Radical Biology and Medicine; Volume 176, Pages 92 - 104.
Date published:
November 20, 2021
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Linda Rowland.
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Myofibre injury induces capillary disruption and regeneration of disorganized microvascular networks. Nicole L. Jacobsen, Charles E. Norton, Rebecca L. Shaw, D. D. W. Cornelison, Steven S. Segal. The Journal of Physiology; Volume 600, Issue 1, p. 41-60.
Date published:
November 11, 2021
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D Cornelison.
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Evolutionary analysis of the Delta and Delta Plus variants of the SARS-CoV-2 viruses. Kannan SR, Spratt AN, Cohen AR, Naqvi SH, Chand HS, Quinn TP, Lorson CL, Byrareddy SN, Singh K. Journal of Autoimmunity; 124:102715.
Date published:
November 1, 2021
Featured in this article:
Christian Lorson,
Kamlendra Singh.
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Placental Changes in the serotonin transporter (Slc6a4) knockout mouse suggest a role for serotonin in controlling nutrient acquisition: Placental Changes in Slc6a4 (SERT) KO Mice. Mao J, Kinkade JA, Bivens NJ, Roberts RM, Rosenfeld CS. Placenta; 115:158-168.
Date published:
November 1, 2021
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Discovery and Evaluation of Entry Inhibitors for SARS-CoV-2 and Its Emerging Variants. Acharya A., Pandey K., Thurman M.,Klug E., Trivedi J.,Sharma K., Lorson C.L., Singh K., Byrareddy S.N.. Journal of Virology; Volume 95, Issue 24.
Date published:
November 1, 2021
Featured in this article:
Christian Lorson,
Kamlendra Singh.
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An optimized spme-gc-ms method for volatile metabolite profiling of different alfalfa (Medicago sativa l.) tissues. Yang D.-S., Lei Z., Bedair M., Sumner L.W.. Molecules; Volume 26, Issue 21.
Date published:
November 1, 2021
Featured in this article:
Lloyd Sumner,
Zhentian Lei.
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The SUMO ligase MMS21 profoundly influences maize development through its impact on genome activity and stability. Zhang J, Augustine RC, Suzuki M, Feng J, Char SN, Yang B, McCarty DR, Vierstra RD. PLoS Genetics; 17(10):e1009830.
Date published:
October 25, 2021
Featured in this article:
Bing Yang.
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The Evolutionary History of Wild, Domesticated, and Feral Brassica oleracea (Brassicaceae). Mabry M.E, Turner-Hissong S.D.,Gallagher E.Y.,McAlvay A.C,An H.,Edger P.P.,Moore J.D.,Pink D.A.C.,Teakle G.R.,Stevens C.J., ,Barker G.,Labate J. Fuller D.Q.,Allaby R.G.,Beissinger T.,Decker J.E.,Gore M.A.,Pires J.C.. Molecular Biology and Evolution; Volume 38, Issue 10, Pages 4419 - 4434.
Date published:
October 10, 2021
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Combination of antioxidant enzyme overexpression and n-acetylcysteine treatment enhances the survival of bone marrow mesenchymal stromal cells in ischemic limb in mice with type 2 diabetes. Zhu Q.,Hao H.,Xu H., Fichman Y., Cui Y., Yang C. , Wang M., Mittler R., Hill M.A., Cowan P.J., Zhang G., He X., Zhou S. , Liu Z.. Journal of the American Heart Association; Volume 10, Issue 19.
Date published:
October 5, 2021
Featured in this article:
Yaya Cui,
Ron Mittler.
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The impact of stress combination on reproductive processes in crops. Sinha R, Fritschi FB, Zandalinas SI, Mittler R. Plant Science; 311:111007.
Date published:
October 1, 2021
Featured in this article:
Ron Mittler.
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Reinfection with two genetically distinct SARS-CoV-2 viruses within 19 days. Tang CY, Wang Y, McElroy JA, Li T, Hammer R, Ritter D, Lidl GM, Webby R, Hang J, Wan X-F. Journal of Medical Virology; 93(10):5700-5703.
Date published:
October 1, 2021
Featured in this article:
XiuFeng “Henry” Wan.
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Cell-adapted mutations and antigenic diversity of influenza b viruses in Missouri, 2019–2020 season. Tang CY, Segovia K, McElroy JA, Li T, Guan M, Zhang X, Misra S, Hang J, Wan X-F. Viruses; 13(10):1896.
Date published:
October 1, 2021
Featured in this article:
XiuFeng “Henry” Wan.
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Triple reassortment increases compatibility among viral ribonucleoprotein genes of contemporary avian and human influenza A viruses. Waters K, Gao C, Ykema M, Han L, Voth L, Tao YJ, Wan X-F. PLoS Pathogens; 17(10):e1009962.
Date published:
October 1, 2021
Featured in this article:
XiuFeng “Henry” Wan.
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Deep learning analysis and age prediction from shoeprints. Hassan M, Wang Y, Wang D, Li D, Liang Y, Zhou Y, Xu D. Forensic Science International; 327:110987.
Date published:
October 1, 2021
Featured in this article:
Dong Xu.
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Global SUMOylome Adjustments in Basal Defenses of Arabidopsis thaliana Involve Complex Interplay Between SMALL-UBIQUITIN LIKE MODIFIERs and the Negative Immune Regulator SUPPRESSOR OF rps4-RLD1. Kasera M, Ingole K.D.,Rampuria S.,Walia Y.,Gassmann W.,Bhattacharjee S.. Frontiers in Cell and Developmental Biology; Volume 9.
Date published:
September 30, 2021
Featured in this article:
Walter Gassmann.
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Syncytins expressed in human placental trophoblast: Human trophoblast syncytins. Roberts RM, Ezashi T, Schulz LC, Sugimoto J, Schust DJ, Khan T, Zhou J. Placenta; 113:8-14.
Date published:
September 15, 2021
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Characterization of Subtype H6 Avian Influenza A Viruses Isolated From Wild Birds in Poyang Lake, China. Wan Z, Kan Q, Zhao Z, Shao H, Deliberto TJ, Wan X-F, Qin A, Ye J. Frontiers in Veterinary Science; 8:685399.
Date published:
September 13, 2021
Featured in this article:
XiuFeng “Henry” Wan.
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High-efficiency plastome base editing in rice with TAL cytosine deaminase. Li R, Char SN, Liu B, Liu H, Li X, Yang B. Molecular Plant; 14(9):1412-1414.
Date published:
September 6, 2021
Featured in this article:
Bing Yang.
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Recent Developments Toward Integrated Metabolomics Technologies (UHPLC-MS-SPE-NMR and MicroED) for Higher-Throughput Confident Metabolite Identifications. Ghosh R, Bu G, Nannenga BL, Sumner LW. Frontiers in Molecular Biosciences; 8:720955.
Date published:
September 2, 2021
Featured in this article:
Lloyd Sumner.
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Fecal metabolome signature in the HIV-1 elite control phenotype: Enrichment of dipeptides acts as an HIV-1 antagonist but a Prevotella agonist. Sperk M, Ambikan AT, Ray S, Singh K, Mikaeloff F, Diez RC, Narayanan A, Vesterbacka J, Nowak P, Sönnerborg A, Neogi U. Journal of Virology; 95(18):e00479-21.
Date published:
September 1, 2021
Featured in this article:
Kamlendra Singh.
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Bridging the gap between analytical and microbial sciences in microbiome research. Quinn RA, Hagiwara KA, Liu K, Goudarzi M, Pathmasiri W, Sumner LW, Metz TO. mSystems; 6(5):e00585-21.
Date published:
September 1, 2021
Featured in this article:
Lloyd Sumner.
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Genome assemblies across the diverse evolutionary spectrum of leishmania protozoan parasites. Warren WC, Akopyants NS, Dobson DE, Hertz-Fowler C, Lye L-F, Myler PJ, Ramasamy G, Shanmugasundram A, Silva-Franco F, Steinbiss S, Tomlinson C, Wilson RK, Beverley SM. Microbiology Resource Announcements; 10(35):e00545-21.
Date published:
September 1, 2021
Featured in this article:
Wes Warren.
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Erratum: The genomics of ecological flexibility, large brains, and long lives in capuchin monkeys revealed with fecalFACS (Proc. Natl. Acad. Sci. U.S.A. (2021) 118 (e2010632118) DOI: 10.1073/pnas.2010632118). Orkin JD, Montague MJ, Tejada-Martinez D, de Manuel M, del Campo J, Hernandez SC, Fiore AD, Fontsere C, Hodgson JA, Janiak MC, Kuderna LFK, Lizano E. Proceedings of the National Academy of Sciences of the United States of America; 118(34):e2112613118.
Date published:
August 24, 2021
Featured in this article:
Wes Warren.
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Effect of Two Unique Nanoparticle Formulations on the Efficacy of a Broadly Protective Vaccine Against Pseudomonas Aeruginosa. howlader, Debaki R., Das Sayan, Lu,Ti, Hu, Gang, Varisco, David J., Dietz, Zackary K. Walton, Sierra P., Rathnakaram, Siva Sai Kumar, Gardner, Francesca M., Ernst, Robert k., Picking William D, Picking Wendy L.. Frontiers in Pharmacology; Volume 18.
Date published:
August 18, 2021
Featured in this article:
Wendy Picking,
William Picking.
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Functional Identification of the Xanthomonas oryzae pv. oryzae Type I-C CRISPR-Cas System and Its Potential in Gene Editing Application. Liu Q, Wang S, Long J, Chen Z, Yang B, Lin F. Frontiers in Microbiology; 12:686715.
Date published:
August 12, 2021
Featured in this article:
Bing Yang.
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Therapeutic implications of SARS-CoV-2 dysregulation of the gut-brain-lung axis. Johnson SD, Olwenyi OA, Bhyravbhatla N, Thurman M, Pandey K, Klug EA, Johnston M, Dyavar SR, Acharya A, Podany AT, Fletcher CV, Mohan M, Singh K, Byrareddy SN. World Journal of Gastroenterology; 27(29):4763-4783.
Date published:
August 7, 2021
Featured in this article:
Kamlendra Singh.
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Primary metabolism: It’s more than what’s for dinner. Anderson JC, Peck SC. Molecular Plant; 14(8):1219-1220.
Date published:
August 2, 2021
Featured in this article:
Scott Peck.
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SPM Receptor Expression and Localization in Irradiated Salivary Glands. dos Santos HT, Nam K, Hunt JP, Buchmann LO, Monroe MM, Baker OJ. Journal of Histochemistry and Cytochemistry; 69(8):523-534.
Date published:
August 1, 2021
Featured in this article:
Olga Baker.
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Monitoring sars-cov-2 populations in wastewater by amplicon sequencing and using the novel program sam refiner. Gregory DA, Wieberg CG, Wenzel J, Lin C-H, Johnson MC. Viruses; 13(8):1647.
Date published:
August 1, 2021
Featured in this article:
Marc Johnson.
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Survival motor neuron deficiency slows myoblast fusion through reduced myomaker and myomixer expression. McCormack NM, Villalón E, Viollet C, Soltis AR, Dalgard CL, Lorson CL, Burnett BG. Journal of Cachexla, Sarcopenla and Muscle; 12(4):1098-1116.
Date published:
August 1, 2021
Featured in this article:
Christian Lorson.
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A combined drug treatment that reduces mitochondrial iron and reactive oxygen levels recovers insulin secretion in NAF-1-deficient pancreatic cells. Karmi O, Sohn Y-S, Marjault H-B, Israeli T, Leibowitz G, Ionnidis K, Nahmias Y, Mittler R, Cabantchik IZ, Nechushtai R. Antioxidants; 10(8):1160.
Date published:
August 1, 2021
Featured in this article:
Ron Mittler.
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Brassica rapa Domestication: Untangling Wild and Feral Forms and Convergence of Crop Morphotypes. McAlvay AC, Ragsdale AP, Mabry ME, Qi X, Bird KA, Velasco P, An H, Pires JC, Emshwiller E. Molecular Biology and Evolution; 38(8):3358-3372.
Date published:
August 1, 2021
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Variation in gene expression between two sorghum bicolor lines differing in innate immunity response. Cui Y, Chen D, Jiang Y, Xu D, Balint-Kurti P, Stacey G. Plant; 10(8):1536.
Date published:
August 1, 2021
Featured in this article:
Dong Xu,
Gary Stacey.
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Genetic mosaicism, intrafamilial phenotypic heterogeneity, and molecular defects of a novel missense SLC6A1 mutation associated with epilepsy and ADHD. Poliquin S, Hughes I, Shen W, Mermer F, Wang J, Mack T, Xu D, Kang J-Q. Experimental Neurology; 342:113723.
Date published:
August 1, 2021
Featured in this article:
Dong Xu.
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Neither gonadotropin nor cumulus cell expansion is needed for the maturation of competent porcine oocytes in vitro†. Redel BK, Spate LD, Yuan Y, Murphy CN, Roberts RM, Prather RS. Biology of Reproduction; 105(2):533-542.
Date published:
August 1, 2021
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Arabidopsis group C Raf-like protein kinases negatively regulate abscisic acid signaling and are direct substrates of SnRK2. Kamiyama Y, Hirotani M, Ishikawa S, Minegishi F, Katagiri S, Rogan CJ, Takahashi F, Nomoto M, Ishikawa K, Kodama Y, Tada Y, Takezawa D, Anderson JC, Peck SC, Shinozaki K, Umezawa T. Proceedings of the National Academy of Sciences of the United States of America; 1118(30):e2100073118.
Date published:
July 27, 2021
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Scott Peck.
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Indomethacin Treatment Post-irradiation Improves Mouse Parotid Salivary Gland Function via Modulation of Prostaglandin E₂ Signaling. Gilman KE, Camden JM, Woods LT, Weisman GA, Limesand KH. Frontiers in Bioengineering and Biotechnology; 9:697671.
Date published:
July 21, 2021
Featured in this article:
Gary Weisman.
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Single Nucleus RNA Sequence (snRNAseq) Analysis of the Spectrum of Trophoblast Lineages Generated From Human Pluripotent Stem Cells in vitro. Khan T, Seetharam AS, Zhou J, Bivens NJ, Schust DJ, Ezashi T, Tuteja G, Roberts RM. Frontiers in Cell and Developmental Biology; 9:695248.
Date published:
July 21, 2021
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High-Throughput Analysis of Tissue-Embedded Single Cells by Mass Spectrometry with Bimodal Imaging and Object Recognition. Stopka SA, Wood EA, Khattar R, Agtuca BJ, Abdelmoula WM, Agar NYR, Stacey G, Vertes A. Analytical Chemistry; 93(28):9677-9687.
Date published:
July 20, 2021
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Gary Stacey.
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Editorial: Computational Resources for Understanding Biomacromolecular Covalent Modifications. Xue Y, Huang H-D, Song J, Ren J, Xu D. Frontiers in Cell and Developmental Biology; 9:728127.
Date published:
July 14, 2021
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Dong Xu.
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G2PDeep: A web-based deep-learning framework for quantitative phenotype prediction and discovery of genomic markers. Zeng S, Mao Z, Ren Y, Wang D, Xu D, Joshi T. Nucleic Acids Research; 49(W1):W228-W236.
Date published:
July 2, 2021
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Dong Xu,
Trupti Joshi.
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SARS-CoV-2 show no infectivity at later stages in a prolonged COVID-19 patient despite positivity in RNA testing. Wan X-F, Tang CY, Ritter D, Wang Y, Li T, Segovia K, Kosikova M, Johnson M, Kwon HJ, Xie H, Hammer RD, McElroy JA, Hamid A, Collins ND, Hang J, Camp S. Journal of Medical Virology; 93(7):4570-4575.
Date published:
July 1, 2021
Featured in this article:
XiuFeng “Henry” Wan,
Marc Johnson.
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grasviq: an image analysis framework for automatically quantifying vein number and morphology in grass leaves. Robil JM, Gao K, Neighbors CM, Boeding M, Carland FM, Bunyak F, McSteen P. Plant Journal; 107(2):629-648.
Date published:
July 1, 2021
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Paula McSteen.
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Vascular and nonvascular transmission of systemic reactive oxygen signals during wounding and heat stress. Zandalinas SI, Mittler R. Plant Physiology; 186(3):1721-1733.
Date published:
July 1, 2021
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Ron Mittler.
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Integration of electric, calcium, reactive oxygen species and hydraulic signals during rapid systemic signaling in plants. Fichman Y, Mittler R. Plant Journal; 107(1):7-20.
Date published:
July 1, 2021
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Ron Mittler.
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The best of both worlds: Combining lineage-specific and universal bait sets in target-enrichment hybridization reactions. Hendriks KP, Mandáková T, Hay NM, Ly E, Hooft van Huysduynen A, Tamrakar E, Thomas SK, Toro-Núñez O, Pires JC, Nikolov LA, Koch MA, Windham MD, Lysak MA, Forest F, Mummenhoff K, Baker WJ, Lens F, Bailey CD. Applications in Plant Sciences; 9(7):e11438.
Date published:
July 1, 2021
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Comparative phylogenetics of repetitive elements in a diverse order of flowering plants (Brassicales). Beric A, Mabry ME, Harkess AE, Brose J, Schranz ME, Conant GC, Edger PP, Meyers BC, Pires JC. G3: Genes, Genomes, Genetics; 11(7):jkab14.
Date published:
July 1, 2021
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Domain-specific Topic Model for Knowledge Discovery in Computational and Data-Intensive Scientific Communities. Zhang Y, Calyam P, Joshi T, Nair S, Xu D. IEEE Transactions on Knowledge and Data Engineering; 1-19.
Date published:
July 1, 2021
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Trupti Joshi,
Dong Xu.
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Redox-dependent structural switch and CBF activation confer freezing tolerance in plants. Lee ES, Park JH, Wi SD, Kang CH, Chi YH, Chae HB, Paeng SK, Ji MG, Kim W-Y, Kim MG, Yun D-J, Stacey G, Lee SY. Nature Plants; 7(7):914-922.
Date published:
July 1, 2021
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Gary Stacey.
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Soybean Hairy Root Transformation: A Rapid and Highly Efficient Method. Song J, Tóth K, Montes-Luz B, Stacey G. Current Protocols; 1(7):e195.
Date published:
July 1, 2021
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Gary Stacey.
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Mass spectrometry-based metabolomics: a guide for annotation, quantification and best reporting practices. Alseekh S, Aharoni A, Brotman Y, Contrepois K, D'Auria J, Ewald J, C Ewald J, Fraser PD, Giavalisco P, Hall RD, Heinemann M, Link H, Luo J, Neumann S, Nielsen J, Perez de Souza L, Saito K, Sauer U, Schroeder FC, Schuster S, Siuzdak G, Skirycz A, Sumner LW, Snyder MP, Tang H, Tohge T, Wang Y, Wen W, Wu S, Xu G, Zamboni N, Fernie AR. Nature Methods; 18(7):747-756.
Date published:
July 1, 2021
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Lloyd Sumner.
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Variations outside the conserved motifs of PB1 catalytic active site may affect replication efficiency of the RNP complex of influenza A virus. Waters K, Wan HJ, Han L, Xue J, Ykema M, Tao YJ, Wan X-F. Virology; 559:145-155.
Date published:
July 1, 2021
Featured in this article:
XiuFeng “Henry” Wan.
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Modeling human peri-implantation placental development and function. Zhou J, West RC, Ehlers EL, Ezashi T, Schulz LC, Roberts RM, Yuan Y, Schust DJ. Biology of Reproduction; 105(1):40-51.
Date published:
July 1, 2021
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Composition and Biophysical Properties of the Sorting Platform Pods in the Shigella Type III Secretion System. Tachiyama, Shoichia, Skaar, Ryana, Chang, Yunjieb, c;Carroll, Brittany L., Muthuramalingam, Meenakumaria;Whittier, Sean K.;Barta, Michael L,Picking, Wendy L.;Liu, Junb, Picking, William D.. Frontiers in Cellular and Infection Microbiology; Volume 11.
Date published:
June 3, 2021
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William Picking,
Wendy Picking.
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Conserved opposite functions in plant resistance to biotrophic and necrotrophic pathogens of the immune regulator srfr1. Son G-H, Moon J, Shelake RM, Vuong UT, Ingle RA, Gassmann W, Kim J-Y, Kim S-H. International Journal of Molecular Sciences; 22(12):6427.
Date published:
June 2, 2021
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Walter Gassmann.
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Global Warming, Climate Change, and Environmental Pollution: Recipe for a Multifactorial Stress Combination Disaster. Zandalinas SI, Fritschi FB, Mittler R. Trends in Plant Science; 26(6):588-599.
Date published:
June 1, 2021
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Ron Mittler.
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Ceruloplasmin as a source of Cu for a fungal pathogen. Besold AN, Shanbhag V, Petris MJ, Culotta VC. Journal of Inorganic Biochemistry; 219:111424.
Date published:
June 1, 2021
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Michael Petris.
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Cross species multi-omics reveals cell wall sequestration and elevated global transcript abundance as mechanisms of boron tolerance in plants. Wang G, DiTusa SF, Oh D-H, Herrmann AD, Mendoza-Cozatl DG, O'Neill MA, Smith AP, Dassanayake M. New Phytologist; 230(5):1985-2000.
Date published:
June 1, 2021
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David Mendoza-Cózatl.
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Erratum: Are pangolins the intermediate host of the 2019 novel coronavirus (SARSCoV-2)? (PLoS Pathogens (2020) 16:5 (e1008421) DOI: 10.1371/journal.ppat.1008421). Liu P, Jiang J-Z, Wan X-F, Hua Y, Li L, Zhou J, Wang X, Hou F, Chen J, Zou J, Chen J. PLoS Pathogens; 17(6):e1009664.
Date published:
June 1, 2021
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XiuFeng “Henry” Wan.
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Reduced Influenza B-Specific Postvaccination Antibody Cross-reactivity in the B/Victoria Lineage-Predominant 2019/20 Season. Xie H, Xiang R, Wan HJ, Plant EP, Radvak P, Kosikova M, Li X, Zoueva O, Ye Z, Wan X-F. Clinical Infectious Diseases; 72(11):E776-E783.
Date published:
June 1, 2021
Featured in this article:
XiuFeng “Henry” Wan.
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Mining the 99 Lives Cat Genome Sequencing Consortium database implicates genes and variants for the Ticked locus in domestic cats (Felis catus). Lyons LA, Buckley RM, Harvey RJ, Abitbol M, Aberdein D, Alves PC, Ohlsson Andersson A, Bellone RR, Bergström TF, Bilgen N, Boyko AR, Brockman JA, Casal ML, Castelhano MG, Davis BW, Davison L, Distl O, Dodman NH, Ellinwood NM, Fogle JE, Forman OP, Garrick DJ, Ginns EI, Häggström J, Hasegawa D, Haase B, Jagannathan V, Lait P, Hernandez I, Hytönen MK, Kaukonen M, Kosho T, Leclerc E, Lear TL, Leeb T, Li RHL, Lohi H, Longeri M, Magnuson MA, Malik R, Mane SP, Middleton R, Munday JS, Murphy WJ, Myers AN, Pedersen NC, Peterson-Jones SM, Rothschild MF, Rusbridge C, Schoenebeck JJ, Shapiro B, Stern JA, Swanson WF, Terio KA, Todhunter RJ, Warren WC, Wilcox EA, Wildschutte JH, Yu Y. Animal Genetics; 52(3):321-332.
Date published:
June 1, 2021
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Wes Warren.
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Explainable artificial intelligence in high-throughput drug repositioning for subgroup stratifications with interventionable potential. Al-Taie Z, Liu D, Mitchem JB, Papageorgiou C, Kaifi JT, Warren WC, Shyu C-R. Journal of Biomedical Informatics; 118:103792.
Date published:
June 1, 2021
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Wes Warren.
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Chronic heat stress delays immune system development and alters serotonin signaling in pre-weaned dairy calves. Marrero MG, Dado-Senn B, Field SL, Yang G, Driver JP, Laporta J. PLoS ONE; 16(6):e0252474.
Date published:
June 1, 2021
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John Driver.
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3D genomics across the tree of life reveals condensin II as a determinant of architecture type. Hoencamp C, Dudchenko O, Elbatsh AMO, Brahmachari S, Raaijmakers JA, van Schaik T, Cacciatore ÁS, Contessoto VG, van Heesbeen RGHP, van den Broek B, Mhaskar AN, Teunissen H, St Hilaire GB, Weisz D, Omer AD, Pham M, Colaric Z, Yang Z, Rao SSP, Mitra N, Lui C, Yao W, Khan R, Moroz LL, Kohn A, St Leger J, Mena A, Holcroft K, Gambetta MC, Lim F, Farley E, Stein N, Haddad A, Chauss D, Mutlu AS, Wang MC, Young ND, Hildebrandt E, Cheng HH, Knight CJ, Burnham TLU, Hovel KA, Beel AJ, Mattei P-J, Kornberg RD, Warren WC, Cary G, Gómez-Skarmeta JL, Hinman V, Lindblad-Toh K, Palma FD, Maeshima K, Multani AS, Pathak S, Nel-Themaat L, Behringer RR, Kaur P, Medema RH, van Steensel B, de Wit E, Onuchic JN, Di Pierro M, Aiden EL, Rowland BD. Science; 372(6545):abe2218.
Date published:
May 28, 2021
Featured in this article:
Wes Warren.
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Transcription Factor β-Catenin Plays a Key Role in Fluid Flow Shear Stress-Mediated Glomerular Injury in Solitary Kidney. Srivastava T, Heruth DP, Duncan RS, Rezaiekhaligh MH, Garola RE, Priya L, Boinpelly VC, Novak J, Ali MF, Joshi T, Alon US, Jiang Y, McCarthy ET, Savin VJ, Sharma R, Johnson ML, Sharma M. Cells; 10(5).
Date published:
May 19, 2021
Featured in this article:
Trupti Joshi.
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The Xa7 resistance gene guards the rice susceptibility gene SWEET14 against exploitation by the bacterial blight pathogen. Luo D, Huguet-Tapia JC, Raborn RT, White FF, Brendel VP, Yang B. Plant Communications; 2(3):100164.
Date published:
May 10, 2021
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Bing Yang.
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DM3Loc: Multi-label mRNA subcellular localization prediction and analysis based on multi-head self-attention mechanism. Wang D, Zhang Z, Jiang Y, Mao Z, Wang D, Lin H, Xu D. Nucleic Acids Research; 49(8):E46.
Date published:
May 7, 2021
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Dong Xu.
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The impact of water deficit and heat stress combination on the molecular response, physiology, and seed production of soybean. Cohen I, Zandalinas SI, Fritschi FB, Sengupta S, Fichman Y, Azad RK, Mittler R. Physiologia Plantarum; 172(1):41-52.
Date published:
May 1, 2021
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Ron Mittler.
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The impact of multifactorial stress combination on plant growth and survival. Zandalinas SI, Sengupta S, Fritschi FB, Azad RK, Nechushtai R, Mittler R. New Phytologist; 230(3):1034-1048.
Date published:
May 1, 2021
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Ron Mittler.
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P2Y receptors for extracellular nucleotides: Contributions to cancer progression and therapeutic implications. Woods LT, Forti KM, Shanbhag VC, Camden JM, Weisman GA. Biochemical Pharmacology; 187:114406.
Date published:
May 1, 2021
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Gary Weisman.
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Genetic variation, environment and demography intersect to shape Arabidopsis defense metabolite variation across Europe. Katz E, Li J-J, Jaegle B, Ashkenazy H, Abrahams SR, Bagaza C, Holden S, Pires CJ, Angelovici R, Kliebenstein DJ. eLife; 10:e67784.
Date published:
May 1, 2021
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Ruthie Angelovici.
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Nuclear localization of hopa1pss61 is required for effector-triggered immunity. Kang H, Nguyen Q-M, Iswanto ABB, Hong JC, Bhattacharjee S, Gassmann W, Kim SH. Plants; 10(5):888.
Date published:
May 1, 2021
Featured in this article:
Walter Gassmann.
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Diazotrophic bacteria and their mechanisms to interact and benefit cereals. Silva Pankievicz VC, do Amaral FP, Ané J-M, Stacey G. Molecular Plant-Microbe Interactions; 34(5):491-498.
Date published:
May 1, 2021
Featured in this article:
Gary Stacey.
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Rapid high-throughput whole-genome sequencing of SARS-CoV-2 by using one-step reverse transcription-PCR amplification with an integrated microfluidic system and next-generation sequencing. Li T, Chung HK, Pireku PK, Beitzel BF, Sanborn MA, Tang CY, Hammer RD, Ritter D, Wan X-F, Berry IM, Hang J. Journal of Clinical Microbiology; 59(5):e02784-20.
Date published:
May 1, 2021
Featured in this article:
XiuFeng “Henry” Wan.
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Current and prospective methods for assessing anti-tumor immunity in colorectal cancer. Nussbaum YI, Manjunath Y, Suvilesh KN, Warren WC, Shyu C-R, Kaifi JT, Ciorba MA, Mitchem JB. International Journal of Molecular Sciences; 22(9):4802.
Date published:
May 1, 2021
Featured in this article:
Wes Warren.
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Rice FLOURY ENDOSPERM 18 encodes a pentatricopeptide repeat protein required for 5′ processing of mitochondrial nad5 messenger RNA and endosperm development. Yu M, Wu M, Ren Y, Wang Y, Li J, Lei C, Sun Y, Bao X, Wu H, Yang H, Pan T, Wang Y, Jing R, Yan M, Zhang H, Zhao L, Zhao Z, Zhang X, Guo X, Cheng Z, Yang B, Jiang L, Wan J. Journal of Integrative Plant Biology; 63(5):834-847.
Date published:
May 1, 2021
Featured in this article:
Bing Yang.
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Terminal Epitope-Dependent Branch Preference of Siglecs Toward N-Glycans. Wang S, Chen C, Guan M, Liu D, Wan X-F, Li L. Frontiers in Molecular Biosciences; 8:645999.
Date published:
April 29, 2021
Featured in this article:
XiuFeng “Henry” Wan.
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Towards complete and error-free genome assemblies of all vertebrate species. Rhie A, McCarthy SA, Fedrigo O, Damas J, Formenti G, Koren S, Uliano-Silva M, Chow W, Fungtammasan A, Kim J, Lee C, Ko BJ, Chaisson M, Gedman GL, Cantin LJ, Thibaud-Nissen F, Haggerty L, Bista I, Smith M, Haase B, Mountcastle J, Winkler S, Paez S, Howard J, Vernes SC, Lama TM, Grutzner F, Warren WC, Balakrishnan CN, Burt D, George JM, Biegler MT, Iorns D, Digby A, Eason D, Robertson B, Edwards T, Wilkinson M, Turner G, Meyer A, Kautt AF, Franchini P, Detrich HW III, Svardal H, Wagner M, Naylor GJP, Pippel M, Malinsky M, Mooney M, Simbirsky M, Hanningan BT, Pesout T, Houck M, Misuraca A, Kingan SB, Hall R, Kronenberg Z, Sović I, Dunn C, Ning Z, Hastie A, Lee J, Selvaraj S, Green RE, Putnam NH, Gut I, Ghurye J, Garrison E, Sims Y, Collins J, Pelan S, Torrance J, Tracey A, Wood J, Dagnew RE, Guan D, London SE, Clayton DF, Mello CV, Friedrich SR, Lovell PV, Osipova E, Al-Ajli FO, Secomandi S, Kim H, Theofanopoulou C, Hiller M, Zhou Y, Harris RS, Makova KD, Medvedev P, Hoffman J, Masterson P, Clark K, Martin F, Howe K, Flicek P, Walenz BP, Kwak W, Clawson H, Diekhans M, Nassar L, Paten B, Kraus RHS, Crawford AJ, Gilbert MTP, Zhang G, Venkatesh B, Murphy RW, Koepfli K-P, Shapiro B, Johnson WE, Di Palma F, Marques-Bonet T, Teeling EC, Warnow T, Graves JM, Ryder OA, Haussler D, O'Brien SJ, Korlach J, Lewin HA, Howe K, Myers EW, Durbin R, Phillippy AM, Jarvis ED. Nature; 592(7856):737-746.
Date published:
April 29, 2021
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Wes Warren.
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Interdependent evolution of biosynthetic gene clusters for momilactone production in rice. Kitaoka N, Zhang J, Oyagbenro RK, Brown B, Wu Y, Yang B, Li Z, Peters RJ. The Plant cell; 33(2):290-305.
Date published:
April 17, 2021
Featured in this article:
Bing Yang.
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Mass Spectrometry Imaging of Bio-oligomer Polydispersity in Plant Tissues by Laser Desorption Ionization from Silicon Nanopost Arrays. Samarah LZ, Tran TH, Stacey G, Vertes A. Angewandte Chemie - International Edition; 60(16):9071-9077.
Date published:
April 12, 2021
Featured in this article:
Gary Stacey.
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Genes derived from ancient polyploidy have higher genetic diversity and are associated with domestication in Brassica rapa. Qi X, An H, Hall TE, Di C, Blischak PD, McKibben MTW, Hao Y, Conant GC, Pires JC, Barker MS. New Phytologist; 230(1):372-386.
Date published:
April 1, 2021
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Replaying the evolutionary tape to investigate subgenome dominance in allopolyploid Brassica napus. Bird KA, Niederhuth CE, Ou S, Gehan M, Pires JC, Xiong Z, VanBuren R, Edger PP. New Phytologist; 230(1):354-371.
Date published:
April 1, 2021
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Feralization: Confronting the Complexity of Domestication and Evolution. Mabry ME, Rowan TN, Pires JC, Decker JE. Trends in Genetics; 37(4):302-305.
Date published:
April 1, 2021
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Soybean transporter database: A comprehensive database for identification and exploration of natural variants in soybean transporter genes. Deshmukh R, Rana N, Liu Y, Zeng S, Agarwal G, Sonah H, Varshney R, Joshi T, Patil GB, Nguyen HT. Physiologia Plantarum; 171(4):756-770.
Date published:
April 1, 2021
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Trupti Joshi.
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A medicago truncatula metabolite atlas enables the visualization of differential accumulation of metabolites in root tissues. Kranawetter C, Zeng S, Joshi T, Sumner LW. Metabolites; 11(4):238.
Date published:
April 1, 2021
Featured in this article:
Trupti Joshi,
Lloyd Sumner.
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A review on medical management of inflammatory bowel disease during the coronavirus disease 2019 pandemic. Chela H, Pasha SB, Wan X-F, Ghouri YA. Journal of Gastroenterology and Hepatology (Australia); 36(4):918-926.
Date published:
April 1, 2021
Featured in this article:
XiuFeng “Henry” Wan.
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P2Y₂ receptor antagonism resolves sialadenitis and improves salivary flow in a Sjögren’s syndrome mouse model. Jasmer KJ, Woods LT, Forti KM, Martin AL, Camden JM, Colanna M, Weisman GA. Archives of Oral Biology; 124:105067.
Date published:
April 1, 2021
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Gary Weisman.
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A CRISPR/Cas9-based genome-editing system for yam (Dioscorea spp.). Syombua ED, Zhang Z, Tripathi JN, Ntui VO, Kang M, George OO, Edward NK, Wang K, Yang B, Tripathi L. Plant Biotechnology Journal; 19(4):645-647.
Date published:
April 1, 2021
Featured in this article:
Bing Yang.
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A (conditional) role for labdane-related diterpenoid natural products in rice stomatal closure. Zhang J, Li R, Xu M, Hoffmann RI, Zhang Y, Liu B, Zhang M, Yang B, Li Z, Peters RJ. New Phytologist; 230(2):698-709.
Date published:
April 1, 2021
Featured in this article:
Bing Yang.
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Final Selection of Quality Protein Popcorn Hybrids. Parsons L, Ren Y, Yobi A, Angelovici R, Rodriguez O, Holding DR. Frontiers in Plant Science; 12:658456.
Date published:
March 24, 2021
Featured in this article:
Ruthie Angelovici.
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Draft Genome Sequence of the Putative Endophytic Bacterium Pantoea agglomerans R6, Associated with Lactuca serriola from South Africa. Istain B, Mokgokong PS, Wu R, Mia J, Gokul A, Mendoza-Cozatl D, Plessis MD, Keyster M. Microbiology Resource Announcements; 10(10):e00023-21.
Date published:
March 11, 2021
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David Mendoza-Cózatl.
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The Developmental and Genetic Architecture of the Sexually Selected Male Ornament of Swordtails. Schartl M, Kneitz S, Ormanns J, Schmidt C, Anderson JL, Amores A, Catchen J, Wilson C, Geiger D, Winkler C, Hedrich R, Warren WC, Walter R, Meyer A, Postlethwait JH. Current Biology; 31(5):911-922.e4.
Date published:
March 8, 2021
Featured in this article:
Wes Warren.
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The Molecular Basis of Kale Domestication: Transcriptional Profiling of Developing Leaves Provides New Insights Into the Evolution of a Brassica oleracea Vegetative Morphotype. Arias T, Niederhuth CE, McSteen P, Pires JC. Frontiers in Plant Science; 12:637115.
Date published:
March 5, 2021
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Paula McSteen,
.
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Exogenous 3,3′-diindolylmethane improves vanadium stress tolerance in brassica napus seedling shoots by modulating antioxidant enzyme activities. Gokul A, Fahiem Carelse M, Niekerk L-A, Klein A, Ludidi N, Mendoza-Cozatl D, Keyster M. Biomolecules; 11(3):1-18.
Date published:
March 3, 2021
Featured in this article:
David Mendoza-Cózatl.
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Predicting Resolvin D1 Pharmacokinetics in Humans with Physiologically-Based Pharmacokinetic Modeling. Yellepeddi VK, Parashar K, Dean SM, Watt KM, Constance JE, Baker OJ. Clinical and Translational Science; 14(2):683-691.
Date published:
March 1, 2021
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Olga Baker.
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Trimers Conjugated to Fibrin Hydrogels Promote Salivary Gland Function. Dos Santos HT, Nam K, Brown CT, Dean SM, Lewis S, Pfeifer CS, Lei P, Petris MJ, Andreadis ST, Baker OJ. Journal of Dental Research; 100(3):268-275.
Date published:
March 1, 2021
Featured in this article:
Michael Petris,
Olga Baker.
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The Conserved arginine required for avrrps4 processing is also required for recognition of its n-terminal fragment in lettuce. Su J, Nguyen Q-M, Kimble A, Pike SM, Kim SH, Gassmann W. Molecular Plant-Microbe Interactions; 34(3):270-278.
Date published:
March 1, 2021
Featured in this article:
Walter Gassmann.
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H7N1 Low Pathogenicity Avian Influenza Viruses in Poultry in the United States during 2018. Lee D-H, Killian ML, Deliberto TJ, Wan X-F, Lei L, Swayne DE, Torchetti MK. Avian Diseases; 65(1):59-62.
Date published:
March 1, 2021
Featured in this article:
XiuFeng “Henry” Wan.
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Ultracontinuous Single Haplotype Genome Assemblies for the Domestic Cat (Felis catus) and Asian Leopard Cat (Prionailurus bengalensis). Bredemeyer KR, Harris AJ, Li G, Zhao L, Foley NM, Roelke-Parker M, O'Brien SJ, Lyons LA, Warren WC, Murphy WJ. Journal of Heredity; 112(2):165-173.
Date published:
March 1, 2021
Featured in this article:
Wes Warren.
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Cross species multi-omics reveals cell wall sequestration and elevated global transcript abundance as mechanisms of boron tolerance in plants. Wang G, DiTusa SF, Oh D-H, Herrmann AD, Mendoza-Cozatl DG, O'Neill MA, Smith AP, Dassanayake M. New Phytologist; 230:1985-2000.
Date published:
February 25, 2021
Featured in this article:
David Mendoza-Cózatl.
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Opposing functions of the plant TOPLESS gene family during SNC1-mediated autoimmunity. Garner CM, Spears BJ, Su J, Cseke LJ, Smith SN, Rogan CJ, Gassmann W. PLoS Genetics; 17(2):e1009026.
Date published:
February 23, 2021
Featured in this article:
Walter Gassmann.
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Plasmodesmata-localized proteins and ROS orchestrate light-induced rapid systemic signaling in Arabidopsis. Fichman Y, Myers RJ Jr, Grant DG, Mittler R. Science Signaling; 14(671):eabf0322.
Date published:
February 23, 2021
Featured in this article:
Ron Mittler.
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Single-cell RNA sequencing of developing maize ears facilitates functional analysis and trait candidate gene discovery. Xu X, Crow M, Rice BR, Li F, Harris B, Liu L, Demesa-Arevalo E, Lu Z, Wang L, Fox N, Wang X, Drenkow J, Luo A, Char SN, Yang B, Sylvester AW, Gingeras TR, Schmitz RJ, Ware D, Lipka AE, Gillis J, Jackson D. Developmental Cell; 56(4):557-568.e6.
Date published:
February 22, 2021
Featured in this article:
Bing Yang.
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The genomics of ecological flexibility, large brains, and long lives in capuchin monkeys revealed with fecalFACS. Orkin JD, Montague MJ, Tejada-Martinez D, de Manuel M, del Campo J, Hernandez SC, Fiore AD, Fontsere C, Hodgson JA, Janiak MC, Kuderna LFK, Lizano E. Proceedings of the National Academy of Sciences of the United States of America; 118(7):e2010632118.
Date published:
February 16, 2021
Featured in this article:
Wes Warren.
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The immunology of syncytialized trophoblast. Schust DJ, Bonney EA, Sugimoto J, Ezashi T, Roberts RM, Choi S, Zhou J. International Journal of Molecular Sciences; 22(4):1-16.
Date published:
February 2, 2021
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.
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The mitochondrial localized CISD-3.1/CISD-3.2 proteins are required to maintain normal germline structure and function in Caenorhabditis elegans. King SD, Gray CF, Song L, Mittler R, Padilla PA. PLoS ONE; 16(2):e0245174.
Date published:
February 1, 2021
Featured in this article:
Ron Mittler.
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Copper metabolism as a unique vulnerability in cancer. Shanbhag VC, Gudekar N, Jasmer K, Papageorgiou C, Singh K, Petris MJ. Biochimica et Biophysica Acta - Molecular Cell Research; 1868(2):118893.
Date published:
February 1, 2021
Featured in this article:
Kamlendra Singh,
Michael Petris.
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Chromosome inheritance and meiotic stability in allopolyploid Brassica napus. Xiong Z, Gaeta RT, Edger PP, Cao Y, Zhao K, Zhang S, Chris Pires J. G3: Genes, Genomes, Genetics; 11(2):jkaa011.
Date published:
February 1, 2021
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.
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Placental SARS-CoV-2 in a pregnant woman with mild COVID-19 disease. Hsu AL, Guan M, Johannesen E, Stephens AJ, Khaleel N, Kagan N, Tuhlei BC, Wan X-F. Journal of Medical Virology; 93(2):1038-1044.
Date published:
February 1, 2021
Featured in this article:
XiuFeng “Henry” Wan.
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The shigella type iii secretion system: An overview from top to bottom. Muthuramalingam, Meenakumari, Whittier, Sean K., Picking, Wendy L, Picking, William D.. Microorganisms; Volume 9, Issue 2, Pages 1 - 27.
Date published:
February 1, 2021
Featured in this article:
Wendy Picking,
William Picking.
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Optimization of RG1-VLP vaccine performance in mice with novel TLR4 agonists. Zacharia, Athina; Harberts, Erin; Valencia, Sarah M.; Myers, Breana; Sanders, Chelsea;Jain, Akshay; Larson, Nicholas R. ; Middaugh, C. Russell ; Picking, William D.; Difilippantonio, Simone; Kirnbauer, Reinhard ; Roden, Richard B.. Vaccine; Volume 39, Issue 2, Pages 292 - 302.
Date published:
January 8, 2021
Featured in this article:
William Picking,
Wendy Picking.
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Short-duration splice promoting compound enables a tunable mouse model of spinal muscular atrophy. Rietz A, Hodgetts KJ, Lusic H, Quist KM, Osman EY, Lorson CL, Androphy EJ. Life Science Alliance; 4(1):e202000889.
Date published:
January 1, 2021
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Christian Lorson.
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Meta-analysis of drought and heat stress combination impact on crop yield and yield components. Cohen I, Zandalinas SI, Huck C, Fritschi FB, Mittler R. Physiologia Plantarum; 171(1):66-76.
Date published:
January 1, 2021
Featured in this article:
Ron Mittler.
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Integration of reactive oxygen species and hormone signaling during abiotic stress. Devireddy AR, Zandalinas SI, Fichman Y, Mittler R. Plant Journal; 105(2):459-476.
Date published:
January 1, 2021
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Ron Mittler.
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Coronavirus helicases: attractive and unique targets of antiviral drug-development and therapeutic patents. Spratt AN, Gallazzi F, Quinn TP, Lorson CL, Sönnerborg A, Singh K. Expert Opinion on Therapeutic Patents; 31(4):339-350.
Date published:
January 1, 2021
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Christian Lorson,
Kamlendra Singh.
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Evolution, correlation, structural impact and dynamics of emerging SARS-CoV-2 variants. Spratt AN, Kannan SR, Woods LT, Weisman GA, Quinn TP, Lorson CL, Sönnerborg A, Byrareddy SN, Singh K. Computational and Structural Biotechnology Journal; 19:3799-3809.
Date published:
January 1, 2021
Featured in this article:
Gary Weisman,
Christian Lorson,
Kamlendra Singh.
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Multi-Cloud Performance and Security Driven Federated Workflow Management. Dickinson M, Debroy S, Calyam P, Valluripally S, Zhang Y, Antequera RB, Joshi T, White T, Xu D. IEEE Transactions on Cloud Computing; 9(1):240-257.
Date published:
January 1, 2021
Featured in this article:
Trupti Joshi,
Dong Xu.
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Application of SNPViz v2.0 using next-generation sequencing data sets in the discovery of potential causative mutations in candidate genes associated with phenotypes. Zeng S, Škrabišová M, Lyu Z, Chan YO, Dietz N, Bilyeu K, Joshi T. International Journal of Data Mining and Bioinformatics; 25(1-2):65-85.
Date published:
January 1, 2021
Featured in this article:
Trupti Joshi.
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Transcriptomic changes of murine visceral fat exposed to intermittent hypoxia at single cell resolution. Khalyfa A, Warren W, Andrade J, Bottoms CA, Rice ES, Cortese R, Kheirandish-Gozal L, Gozal D. International Journal of Molecular Sciences; 22(1):1-24.
Date published:
January 1, 2021
Featured in this article:
Wes Warren.
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Fixation of allelic gene expression landscapes and expression bias pattern shape the transcriptome of the clonal Amazon molly. Lu Y, Bierbach D, Ormanns J, Warren WC, Walter RB, Schartl M. Genome Research; 31(3):372-379.
Date published:
January 1, 2021
Featured in this article:
Wes Warren.
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Epigenetic Regulation of Cancer Immune Cells. Avella Patino DM, Radhakrishnan V, Suvilesh KN, Manjunath Y, Li G, Kimchi ET, Staveley-O'Carroll KF, Warren WC, Kaifi JT, Mitchem JB. Seminars in Cancer Biology; 1-7.
Date published:
January 1, 2021
Featured in this article:
Wes Warren.
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MusiteDeep: A deep-learning based webserver for protein post-translational modification site prediction and visualization. Wang D, Liu D, Yuchi J, He F, Jiang Y, Cai S, Li J, Xu D. Nucleic Acids Research; 48(W1):W140-W146.
Date published:
January 1, 2021
Featured in this article:
Dong Xu.
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Overlapping community detection based on membership degree propagation. Gao R, Li S, Shi X, Liang Y, Xu D. Entropy; 23(1):1-35.
Date published:
January 1, 2021
Featured in this article:
Dong Xu.
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[Deep Neural Architecture Search: A Survey] [深度神经架构搜索综述]. Meng Z, Gu X, Liang Y, Xu D, Wu C. Jisuanji Yanjiu yu Fazhan/Computer Research and Development; 58(1):22-33.
Date published:
January 1, 2021
Featured in this article:
Dong Xu.
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MULocDeep: A deep-learning framework for protein subcellular and suborganellar localization prediction with residue-level interpretation. Jiang Y, Wang D, Yao Y, Eubel H, Künzler P, Møller IM, Xu D. Computational and Structural Biotechnology Journal; 19:4825-4839.
Date published:
January 1, 2021
Featured in this article:
Dong Xu.
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Computational methods for protein localization prediction. Jiang Y, Wang D, Wang W, Xu D. Computational and Structural Biotechnology Journal; 19:5834-5844.
Date published:
January 1, 2021
Featured in this article:
Dong Xu.
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Potential applications of the CRISPR/Cas technology for genetic improvement of yam (Dioscorea spp.). Syombua ED, Tripathi JN, Obiero GO, Nguu EK, Yang B, Wang K, Tripathi L. Food and Energy Security; 1-18.
Date published:
January 1, 2021
Featured in this article:
Bing Yang.
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Unaltered influenza disease outcomes in swine prophylactically treated with α-galactosylceramide. Gu W, Madrid DMD, Yang G, Artiaga BL, Loeb JC, Castleman WL, Richt JA, Lednicky JA, Driver JP. Developmental and Comparative Immunology; 114:103843.
Date published:
January 1, 2021
Featured in this article:
John Driver.
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GmKIX8-1 regulates organ size in soybean and is the causative gene for the major seed weight QTL qSw17-1. Nguyen CX, Paddock KJ, Zhang Z, Stacey MG. New Phytologist; 229(2):920-934.
Date published:
January 1, 2021
Featured in this article:
Minviluz (Bing) Stacey.
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Preformulation Characterization and the Effect of Ionic Excipients on the Stability of a Novel DB Fusion Protein. Jain, A., Hu, G., Kumar Ratnakaram, S.S., . Picking, W.L., Middaugh, C.R.. Journal of Pharmaceutical Sciences ; 110(1), pp. 108–123.
Date published:
January 1, 2021
Featured in this article:
William Picking,
Wendy Picking.
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2020
Sequence diversity analyses of an improved rhesus macaque genome enhance its biomedical utility. Warren WC, Harris RA, Haukness M, Fiddes IT, Murali SC, Fernandes J, Dishuck PC, Storer JM, Raveendran M, Hillier LW, Porubsky D, Mao Y, Gordon D, Vollger MR, Lewis AP, Munson KM, Devogelaere E, Armstrong J, Diekhans M, Walker JA, Tomlinson C, Graves-Lindsay TA, Kremitzki M, Salama SR, Audano PA, Escalona M, Maurer NW, Antonacci F, Mercuri L, Maggiolini FAM, Catacchio CR, Underwood JG, O'Connor DH, Sanders AD, Korbel JO, Ferguson B, Kubisch HM, Picker L, Kalin NH, Rosene D, Levine J, Abbott DH, Gray SB, Sanchez MM, Kovacs-Balint ZA, Kemnitz JW, Thomasy SM, Roberts JA, Kinnally EL, Capitanio JP, Skene JHP, Platt M, Cole SA, Green RE, Ventura M, Wiseman RW, Paten B, Batzer MA, Rogers J, Eichler EE. Science; 370(6523):eabc6617.
Date published:
December 18, 2020
Featured in this article:
Wes Warren.
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CRISPR/Cas9-Mediated Knockout of Galactinol Synthase-Encoding Genes Reduces Raffinose Family Oligosaccharide Levels in Soybean Seeds. Le H, Nguyen NH, Ta DT, Le TNT, Bui TP, Le NT, Nguyen CX, Rolletschek H, Stacey G, Stacey MG, Pham NB, Do PT, Chu HH. Frontiers in Plant Science; 11:612942.
Date published:
December 17, 2020
Featured in this article:
Gary Stacey,
Minviluz (Bing) Stacey.
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A multiomics discriminatory analysis approach to identify drought-related signatures in maize nodal roots. Sen S, McCubbin T, King SK, Greeley LA, Zeng S, Baker C, Mertz R, Niehues ND, Stemmle JT, Fristchi FB, Braun D, Peck SC, Oliver MJ, Sharp RE, Joshi T. Proceedings - 2020 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2020; 1856-1861.
Date published:
December 16, 2020
Featured in this article:
Scott Peck,
Trupti Joshi.
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SNPViz v2.0: A web-based tool for enhanced haplotype analysis using large scale resequencing datasets and discovery of phenotypes causative gene using allelic variations. Zeng S, Skrabisova M, Lyu Z, Chan YO, Bilyeu K, Joshi T. Proceedings - 2020 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2020; 1408-1415.
Date published:
December 16, 2020
Featured in this article:
Trupti Joshi.
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A Formative Usability Study to Improve Prescriptive Systems for Bioinformatics Big Data. Singh K, Li S, Jahnke I, Pandey A, Lyu Z, Joshi T, Calyam P. Proceedings - 2020 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2020; 735-742.
Date published:
December 16, 2020
Featured in this article:
Kamlendra Singh,
Zhen Lyu,
Trupti Joshi.
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Author Correction: Elephant shark genome provides unique insights into gnathostome evolution (Nature, (2014), 505, 7482, (174-179), 10.1038/nature12826). Venkatesh B, Lee AP, Ravi V, Maurya AK, Lian MM, Swann JB, Ohta Y, Flajnik MF, Sutoh Y, Kasahara M, Hoon S, Gangu V, Roy SW, Irimia M, Korzh V, Kondrychyn I, Lim ZW, Tay B-H, Tohari S, Kong KW, Ho S, Lorente-Galdos B, Quilez J, Marques-Bonet T, Raney BJ, Ingham PW, Tay A, Hillier LW, Minx P, Boehm T, Wilson RK, Brenner S, Warren WC. Nature; 588(7837):E15.
Date published:
December 10, 2020
Featured in this article:
Wes Warren.
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Cell Sheets Restore Secretory Function in Wounded Mouse Submandibular Glands. Dos Santos HT, Kim K, Okano T, Camden JM, Weisman GA, Baker OJ, Nam K. Cells; 9(12).
Date published:
December 9, 2020
Featured in this article:
Gary Weisman,
Olga Baker.
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Genome-wide identification of the expansin gene family and its potential association with drought stress in moso bamboo. Jin K-M, Zhuo R-Y, Xu D, Wang Y-J, Fan H-J, Huang B-Y, Qiao G-R. International Journal of Molecular Sciences; 21(24):1-21.
Date published:
December 2, 2020
Featured in this article:
Dong Xu.
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Leaping into the unknown world of sporisorium scitamineum candidate effectors. Teixeira-Silva NS, Schaker PDC, Rody HVS, Maia T, Garner CM, Gassmann W, Monteiro-Vitorello CB. Journal of Fungi; 6(4):1-26.
Date published:
December 1, 2020
Featured in this article:
Walter Gassmann.
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Infectivity of SARS-CoV-2: there Is Something More than D614G?. Kannan SR, Spratt AN, Quinn TP, Heng X, Lorson CL, Sönnerborg A, Byrareddy SN, Singh K. Journal of Neuroimmune Pharmacology; 15(4):574-577.
Date published:
December 1, 2020
Featured in this article:
Christian Lorson,
Kamlendra Singh.
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Metallothioneins regulate ATP7A trafficking and control cell viability during copper deficiency and excess. Gudekar N, Shanbhag V, Wang Y, Ralle M, Weisman GA, Petris MJ. Scientific Reports; 10(1):7856.
Date published:
December 1, 2020
Featured in this article:
Gary Weisman,
Michael Petris.
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Developmental exposure of California mice to endocrine disrupting chemicals and potential effects on the microbiome-gut-brain axis at adulthood. Kaur S, Sarma SJ, Marshall BL, Liu Y, Kinkade JA, Bellamy MM, Mao J, Helferich WG, Schenk AK, Bivens NJ, Lei Z, Sumner LW, Bowden JA, Koelmel JP, Joshi T, Rosenfeld CS. Scientific Reports; 10(1):10902.
Date published:
December 1, 2020
Featured in this article:
Lloyd Sumner,
Trupti Joshi.
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Author Correction: Developmental exposure of California mice to endocrine disrupting chemicals and potential effects on the microbiome-gut-brain axis at adulthood (Scientific Reports, (2020), 10, 1, (10902), 10.1038/s41598-020-67709-9). Kaur S, Sarma SJ, Marshall BL, Liu Y, Kinkade JA, Bellamy MM, Mao J, Helferich WG, Schenk AK, Bivens NJ, Lei Z, Sumner LW, Bowden JA, Koelmel JP, Joshi T, Rosenfeld CS. Scientific Reports; 10(1):12524.
Date published:
December 1, 2020
Featured in this article:
Lloyd Sumner,
Trupti Joshi.
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Increased HIV in Greater Kinshasa Urban Health Zones: Democratic Republic of Congo (2017–2018). Pour M, James L, Singh K, Mampunza S, Baer F, Scott JA, Berg MG, Rodgers MA, Cloherty GA, Hackett J Jr, McArthur CP. AIDS Research and Therapy; 17(1):67.
Date published:
December 1, 2020
Featured in this article:
Kamlendra Singh.
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Selective Enrichment Coupled with Proteomics to Identify S-Acylated Plasma Membrane Proteins in Arabidopsis. Zhou L, Zhou M, Gritsenko MA, Stacey G. Current Protocols In Plant Biology; 5(4):e20119.
Date published:
December 1, 2020
Featured in this article:
Gary Stacey.
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Genome-wide association analysis of the strength of the MAMP-elicited defense response and resistance to target leaf spot in sorghum. Samira R, Kimball JA, Samayoa LF, Holland JB, Jamann TM, Brown PJ, Stacey G, Balint-Kurti PJ. Scientific Reports; 10(1):20817.
Date published:
December 1, 2020
Featured in this article:
Gary Stacey.
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Light spectra affect the in vitro shoot development of Cedrela fissilis Vell. (Meliaceae) by changing the protein profile and polyamine contents. Oliveira TDR, Aragão VPM, Moharana KC, Fedosejevs E, do Amaral FP, Sousa KR, Thelen JJ, Venâncio TM, Silveira V, Santa-Catarina C. Biochimica et Biophysica Acta - Proteins and Proteomics; 1868(12):140529.
Date published:
December 1, 2020
Featured in this article:
Jay Thelen.
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Docking of acetyl-CoA carboxylase to the plastid envelope membrane attenuates fatty acid production in plants. Ye Y, Nikovics K, To A, Lepiniec L, Fedosejevs ET, Van Doren SR, Baud S, Thelen JJ. Nature Communications; 11(1):6191.
Date published:
December 1, 2020
Featured in this article:
Jay Thelen.
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Antibody responses to sars-cov-2 antigens in humans and animals. Kim H, Seiler P, Jones JC, Ridout G, Camp KP, Fabrizio TP, Jeevan T, Miller LA, Throm RE, Ferrara F, Fredrickson RL, Lowe JF, Wang L, Odemuyiwa SO, Wan X-F, Webby RJ. Vaccines; 8(4):1-15.
Date published:
December 1, 2020
Featured in this article:
XiuFeng “Henry” Wan.
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Cross-Protection by Inactivated H5 Prepandemic Vaccine Seed Strains against Diverse Goose/Guangdong Lineage H5N1 Highly Pathogenic Avian Influenza Viruses. Criado MF, Sá e Silva M, Lee D-H, de Lima Salge CA, Spackman E, Donis R, Wan X-F, Swayne DE. Journal of Virology; 94(24):e00720-20.
Date published:
December 1, 2020
Featured in this article:
XiuFeng “Henry” Wan.
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Tissue Tropisms of Avian Influenza A Viruses Affect Their Spillovers from Wild Birds to Pigs. Zhang X, Cunningham FL, Li L, Hanson-Dorr K, Liu L, Waters K, Guan M, Olivier AK, Schmit BS, Nolting JM, Bowman AS, Torchetti MK, DeLiberto TJ, Wan X-F. Journal of Virology; 94(24):e00847-20.
Date published:
December 1, 2020
Featured in this article:
XiuFeng “Henry” Wan.
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Global assessment of organ specific basal gene expression over a diurnal cycle with analyses of gene copies exhibiting cyclic expression patterns. Lu Y, Boswell M, Boswell W, Salinas R, Savage M, Reyes J, Walter S, Marks R, Gonzalez T, Medrano G, Warren WC, Schartl M, Walter RB. BMC Genomics; 21(1):787.
Date published:
December 1, 2020
Featured in this article:
Wes Warren.
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Radiation-induced salivary gland dysfunction: Mechanisms, therapeutics and future directions. Jasmer KJ, Gilman KE, Forti KM, Weisman GA, Limesand KH. Journal of Clinical Medicine; 9(12):1-37.
Date published:
December 1, 2020
Featured in this article:
Gary Weisman.
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Single-Cell Techniques and Deep Learning in Predicting Drug Response. Wu Z, Lawrence PJ, Ma A, Zhu J, Xu D, Ma Q. Trends in Pharmacological Sciences; 41(12):1050-1065.
Date published:
December 1, 2020
Featured in this article:
Dong Xu.
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Deep Learning Detection of Inaccurate Smart Electricity Meters: A Case Study. Liu M, Liu D, Sun G, Zhao Y, Wang D, Liu F, Fang X, He Q, Xu D. IEEE Industrial Electronics Magazine; 14(4):79-90.
Date published:
December 1, 2020
Featured in this article:
Dong Xu.
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Differential activities of maize plant elicitor peptides as mediators of immune signaling and herbivore resistance. Poretsky E, Dressano K, Weckwerth P, Ruiz M, Char SN, Shi D, Abagyan R, Yang B, Huffaker A. Plant Journal; 104(6):1582-1602.
Date published:
December 1, 2020
Featured in this article:
Bing Yang.
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Increasing serotonin bioavailability alters gene expression in peripheral leukocytes and lymphoid tissues of dairy calves. Marrero MG, Field SL, Skibiel AL, Dado-Senn B, Driver JP, Laporta J. Scientific Reports; 10(1):9712.
Date published:
December 1, 2020
Featured in this article:
John Driver.
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Oncogenic allelic interaction in Xiphophorus highlights hybrid incompatibility. Lu Y, Sandoval A, Voss S, Lai Z, Kneitz S, Boswell W, Boswell M, Savage M, Walter C, Warren W, Schartl M, Walter R. Proceedings of the National Academy of Sciences of the United States of America; 117(47):29786-29794.
Date published:
November 24, 2020
Featured in this article:
Wes Warren.
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Sequence analysis in Bos taurus reveals pervasiveness of X–Y arms races in mammalian lineages. Hughes JF, Skaletsky H, Pyntikova T, Koutseva N, Raudsepp T, Brown LG, Bellott DW, Cho T-J, Dugan-Rocha S, Khan Z, Kremitzki C, Fronick C, Graves-Lindsay TA, Fulton L, Warren WC, Wilson RK, Owens E, Womack JE, Murphy WJ, Muzny DM, Worley KC, Chowdhary BP, Gibbs RA, Page DC. Genome Research; 31(12):1716-1726.
Date published:
November 18, 2020
Featured in this article:
Wes Warren.
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Recommender-as-a-service with chatbot guided domain-science knowledge discovery in a science gateway. Vekaria K, Calyam P, Sivarathri SS, Wang S, Zhang Y, Pandey A, Chen C, Xu D, Joshi T, Nair S. Concurrency Computation; 33:e6080.
Date published:
November 11, 2020
Featured in this article:
Dong Xu,
Trupti Joshi.
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Utility of Proteomics in Emerging and Re-Emerging Infectious Diseases Caused by RNA Viruses. Sperk M, Van Domselaar R, Rodriguez JE, Mikaeloff F, Sá Vinhas B, Saccon E, Sönnerborg A, Singh K, Gupta S, Végvári Á, Neogi U. Journal of Proteome Research; 19(11):4259-4274.
Date published:
November 6, 2020
Featured in this article:
Kamlendra Singh.
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Phytochrome B is required for systemic stomatal responses and reactive oxygen species signaling during light stress. Devireddy AR, Liscum E, Mittler R. Plant Physiology; 184(3):1563-1572.
Date published:
November 3, 2020
Featured in this article:
Ron Mittler.
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Genomic prediction informed by biological processes expands our understanding of the genetic architecture underlying free amino acid traits in dry arabidopsis seeds. Turner-Hissong SD, Bird KA, Lipka AE, King EG, Beissinger TM, Angelovici R. G3: Genes, Genomes, Genetics; 10(11):4227-4239.
Date published:
November 1, 2020
Featured in this article:
Ruthie Angelovici.
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2′-fluoro-modified pyrimidines enhance affinity of RNA oligonucleotides to HIV-1 reverse transcriptase. Gruenke, PR, Alam, KK, Singh K, Burke DH. RNA; 26(11):1667-1679.
Date published:
November 1, 2020
Featured in this article:
Kamlendra Singh,
Donald Burke-Agüero.
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Heme oxygenase promotes B-Raf-dependent melanosphere formation. Jasmer KJ, Hou J, Mannino P, Cheng J, Hannink M. Pigment Cell and Melanoma Research; 33(6):850-868.
Date published:
November 1, 2020
Featured in this article:
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The balancing act of NEET proteins: Iron, ROS, calcium and metabolism. Nechushtai R, Karmi O, Zuo K, Marjault H-B, Darash-Yahana M, Sohn Y-S, King SD, Zandalinas SI, Carloni P, Mittler R. Biochimica et Biophysica Acta - Molecular Cell Research; 1867(11):118805.
Date published:
November 1, 2020
Featured in this article:
Ron Mittler.
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High temperatures modify plant responses to abiotic stress conditions. Balfagón D, Zandalinas SI, Mittler R, Gómez-Cadenas A. Physiologia Plantarum; 170(3):335-344.
Date published:
November 1, 2020
Featured in this article:
Ron Mittler.
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Vascular bundles mediate systemic reactive oxygen signaling during light stress. Zandalinas SI, Fichman Y, Mittler R. Plant Cell; 32(11):3425-3435.
Date published:
November 1, 2020
Featured in this article:
Ron Mittler.
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Correction: Stuckel, et al.; Enhanced CXCR4 expression associates with increased gene body 5-hydroxymethylcytosine modification but not decreased promoter methylation in colorectal cancer. (Cancers 2020, 12, 539). Stuckel AJ, Zhang W, Zhang X, Zeng S, Dougherty U, Mustafi, Zhang Q, Perreand E, Khare T, Joshi T, West-Szymanski DC, Bissonnette M, Khare S. Cancers; 12(11):1-3.
Date published:
November 1, 2020
Featured in this article:
Trupti Joshi.
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Genetic elucidation of interconnected antibiotic pathways mediating maize innate immunity. Ding Y, Weckwerth PR, Poretsky E, Murphy KM, Sims J, Saldivar E, Christensen SA, Char SN, Yang B, Tong A-D, Shen Z, Kremling KA, Buckler ES, Kono T, Nelson DR, Bohlmann J, Bakker MG, Vaughan MM, Khalil AS, Betsiashvili M, Dressano K, Köllner TG, Briggs SP, Zerbe P, Schmelz EA, Huffaker A. Nature Plants; 6(11):1375-1388.
Date published:
November 1, 2020
Featured in this article:
Bing Yang.
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A new domestic cat genome assembly based on long sequence reads empowers feline genomic medicine and identifies a novel gene for dwarfism. Buckley RM, Davis BW, Brashear WA, Farias FHG, Kuroki K, Graves T, Hillier LW, Kremitzki M, Li G, Middleton RP, Minx P, Tomlinson C, Lyons LA, Murphy WJ, Warren WC. PLoS Genetics; 16(10):e1008926.
Date published:
October 22, 2020
Featured in this article:
Wes Warren.
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Modulation of Immune Responses to Influenza A Virus Vaccines by Natural Killer T Cells. Driver JP, de Carvalho Madrid DM, Gu W, Artiaga BL, Richt JA. Frontiers in Immunology; 11:2172.
Date published:
October 20, 2020
Featured in this article:
John Driver.
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The NS1 protein of the parvovirus MVM Aids in the localization of the viral genome to cellular sites of DNA damage. Majumder K, Boftsi M, Whittle FB, Wang J, Fuller MS, Joshi T, Pintel DJ. PLoS Pathogens; 16(10):e1009002.
Date published:
October 16, 2020
Featured in this article:
Trupti Joshi.
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Optimized Pseudotyping Conditions for the SARS-COV-2 Spike Glycoprotein. Johnson MC, Lyddon TD, Suarez R, Salcedo B, LePique M, Graham M, Ricana C, Robinson C, Ritter DG. Journal of Virology; 94(21):e01062-20.
Date published:
October 14, 2020
Featured in this article:
Marc Johnson.
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Aptamers with Tunable Affinity Enable Single-Molecule Tracking and Localization of Membrane Receptors on Living Cancer Cells. Delcanale P, Porciani D, Pujals S, Jurkevich A, Chetrusca A, Tawiah KD, Burke DH, Albertazzi L. Angewandte Chemie - International Edition; 59(42):18546-18555.
Date published:
October 12, 2020
Featured in this article:
Donald Burke-Agüero.
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Deletion of maize RDM4 suggests a role in endosperm maturation as well as vegetative and stress-responsive growth. Jia S, Yobi A, Naldrett MJ, Alvarez S, Angelovici R, Zhang C, Holding DR. Journal of Experimental Botany; 71(19):5880-5895.
Date published:
October 7, 2020
Featured in this article:
Ruthie Angelovici.
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Intra-Strain Genetic Variation of Platyfish (Xiphophorus maculatus) Strains Determines Tumorigenic Trajectory. Lu Y, Olivas T, Boswell M, Boswell W, Warren WC, Schartl M, Walter RB. Frontiers in Genetics; 11:562594.
Date published:
October 6, 2020
Featured in this article:
Wes Warren.
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Label-Free Quantitative Phosphoproteomics Reveals Signaling Dynamics Involved in Embryogenic Competence Acquisition in Sugarcane. Almeida FA, Passamani LZ, Santa-Catarina C, Mooney BP, Thelen JJ, Silveira V. Journal of Proteome Research; 19(10):4145-4157.
Date published:
October 2, 2020
Featured in this article:
Jay Thelen.
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MYB30 orchestrates systemic reactive oxygen signaling and plant acclimation. Fichman Y, Zandalinas SI, Sengupta S, Burks D, Myers RJ Jr, Azad RK, Mittler R. Plant Physiology; 184(2):666-675.
Date published:
October 1, 2020
Featured in this article:
Ron Mittler.
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Noninvasive Live ROS Imaging of Whole Plants Grown in Soil. Fichman Y, Mittler R. Trends in Plant Science; 25(10):1052-1053.
Date published:
October 1, 2020
Featured in this article:
Ron Mittler.
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P2Y2 receptors mediate nucleotide-induced EGFR phosphorylation and stimulate proliferation and tumorigenesis of head and neck squamous cell carcinoma cell lines. Woods LT, Jasmer KJ, Muñoz Forti K, Shanbhag VC, Camden JM, Erb L, Petris MJ, Weisman GA. Oral Oncology; 109:104808.
Date published:
October 1, 2020
Featured in this article:
Michael Petris,
Gary Weisman.
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Leveraging systematic functional analysis to benchmark an in silico framework distinguishes driver from passenger MEK mutants in cancer. Hanrahan AJ, Sylvester BE, Chang MT, Elzein A, Gao J, Han W, Liu Y, Xu D, Gao SP, Gorelick AN, Jones AM, Kiliti AJ, Nissan MH, Nimura CA, Poteshman AN, Yao Z, Gao Y, Hu W, Wise HC, Gavrila EI, Shoushtari AN, Tiwari S, Viale A, Abdel-Wahab O, Merghoub T, Berger MF, Rosen N, Taylor BS, Solit DB. Cancer Research; 80(19):4233-4243.
Date published:
October 1, 2020
Featured in this article:
Dong Xu.
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CD70 inversely regulates regulatory T cells and invariant NKT cells and modulates type 1 diabetes in NOD mice. Ye C, Low BE, Wiles MV, Brusko TM, Serreze DV, Driver JP. Journal of Immunology; 205(7):1763-1777.
Date published:
October 1, 2020
Featured in this article:
John Driver.
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Intraoperative visualisation and treatment of salivary glands in Sjögren’s syndrome by contrast-enhanced ultrasound sialendoscopy (CEUSS): protocol for a phase I single-centre, single-arm, exploratory study. Karagozoglu KH, Helder M, Bot J, Kamp O, Forouzanfar T, Brand HS, Cha S, Weisman G, Bartelink I, Vissink A, Jager DHJ. BMJ open; 10(9):e033542.
Date published:
September 30, 2020
Featured in this article:
Gary Weisman.
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FMO1 Is Involved in Excess Light Stress-Induced Signal Transduction and Cell Death Signaling. Czarnocka W, Fichman Y, Bernacki M, Różańska E, Sańko-Sawczenko I, Mittler R, Karpiński S. Cells; 9(10).
Date published:
September 24, 2020
Featured in this article:
Ron Mittler.
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Functional Analysis of the teosinte branched 1 Gene in the Tetraploid Switchgrass (Panicum virgatum L.) by CRISPR/Cas9-Directed Mutagenesis. Liu Y, Wang W, Yang B, Currey C, Fei S-Z. Frontiers in Plant Science; 11:572193.
Date published:
September 23, 2020
Featured in this article:
Bing Yang.
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AAV9-DOK7 gene therapy reduces disease severity in Smn2B/- SMA model mice. Kaifer KA, Villalón E, Smith CE, Simon ME, Marquez J, Hopkins AE, Morcos TI, Lorson CL. Biochemical and Biophysical Research Communications; 530(1):107-114.
Date published:
September 10, 2020
Featured in this article:
Christian Lorson.
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HAPPI GWAS: Holistic analysis with pre- And post-integration GWAS. Slaten ML, Chan YO, Shrestha V, Lipka AE, Angelovici R. Bioinformatics; 36(17):4655-4657.
Date published:
September 1, 2020
Featured in this article:
Ruthie Angelovici.
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Limited cross-protection provided by prior infection contributes to high prevalence of influenza D viruses in cattle. Wan X-F, Ferguson L, Oliva J, Rubrum A, Eckard L, Zhang X, Woolums AR, Lion A, Meyer G, Murakami S, Ma W, Horimoto T, Webby R, Ducatez MF, Epperson W. Journal of Virology; 94(18):e00240-20.
Date published:
September 1, 2020
Featured in this article:
XiuFeng “Henry” Wan.
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Measuring Site-specific Glycosylation Similarity between Influenza a Virus Variants with Statistical Certainty. Chang D, Hackett WE, Zhong L, Wan X-F, Zaia J. Molecular and Cellular Proteomics; 19(9):1533-1545.
Date published:
September 1, 2020
Featured in this article:
XiuFeng “Henry” Wan.
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How oncogenic mutations activate human MAP kinase 1 (MEK1): a molecular dynamics simulation study. Liu Y, Zhu J, Guo X, Huang T, Han J, Gao J, Xu D, Han W. Journal of Biomolecular Structure and Dynamics; 38(13):3942-3958.
Date published:
September 1, 2020
Featured in this article:
Dong Xu.
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Primate lentiviruses require Inositol hexakisphosphate (IP6) or inositol pentakisphosphate (IP5) for the production of viral particles. Ricana CL, Johnson MC, Lyddon TD, Dick RA. PLoS Pathogens; 16(8):e1008646.
Date published:
August 1, 2020
Featured in this article:
Marc Johnson.
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Coordinated systemic stomatal responses in soybean. Zandalinas SI, Cohen IH, Fritschi FB, Mittler R. Plant Physiology; 183(4):1428-1431.
Date published:
August 1, 2020
Featured in this article:
Ron Mittler.
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Phylogeny and multiple independent whole-genome duplication events in the Brassicales. Mabry ME, Brose JM, Blischak PD, Sutherland B, Dismukes WT, Bottoms CA, Edger PP, Washburn JD, An H, Hall JC, McKain MR, Al-Shehbaz I, Barker MS, Schranz ME, Conant GC, Pires JC. American Journal of Botany; 107(8):1148-1164.
Date published:
August 1, 2020
Featured in this article:
.
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Evolution of Lomandroideae: Multiple origins of polyploidy and biome occupancy in Australia. Gunn BF, Murphy DJ, Walsh NG, Conran JG, Pires JC, Macfarlane TD, Birch JL. Molecular Phylogenetics and Evolution; 149:106836.
Date published:
August 1, 2020
Featured in this article:
.
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Upregulated proteoglycan-related signaling pathways in fluid flow shear stress-treated podocytes. Srivastava T, Joshi T, Jiang Y, Heruth DP, Rezaiekhaligh MH, Novak J, Staggs VS, Alon US, Garola RE, El-Meanawy A, McCarthy ET, Zhou J, Boinpelly VS, Sharma R, Savin VJ, Sharma M. American Journal of Physiology - Renal Physiology; 319(2):F312-F322.
Date published:
August 1, 2020
Featured in this article:
Trupti Joshi.
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Metabolomic profiling of wild-type and mutant soybean root nodules using laser-ablation electrospray ionization mass spectrometry reveals altered metabolism. Agtuca BJ, Stopka SA, Evans S, Samarah L, Liu Y, Xu D, Stacey MG, Koppenaal DW, Paša-Tolić L, Anderton CR, Vertes A, Stacey G. Plant Journal; 103(5):1937-1958.
Date published:
August 1, 2020
Featured in this article:
Dong Xu,
Minviluz (Bing) Stacey,
Gary Stacey.
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Proteomic and bioinformatic profiling of transporters in higher plant mitochondria. Møller IM, Shyama Prasad Rao R, Jiang Y, Thelen JJ, Xu D. Biomolecules; 10(8):1-13.
Date published:
August 1, 2020
Featured in this article:
Jay Thelen,
Dong Xu.
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Comprehensive N- and O-glycosylation mapping of human coagulation factor V. Ma C, Liu D, Li D, Zhang J, Xu X-Q, Zhu H, Wan X-F, Miao CH, Konkle BA, Onigman P, Xiao W, Li L. Journal of Thrombosis and Haemostasis; 18(8):1884-1892.
Date published:
August 1, 2020
Featured in this article:
XiuFeng “Henry” Wan.
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Transport and fate of human expiratory droplets – A modeling approach. Wang B, Wu H, Wan X-F. Physics of Fluids; 32(8):083307.
Date published:
August 1, 2020
Featured in this article:
XiuFeng “Henry” Wan.
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A novel swine sex-linked marker and its application across different mammalian species. Lucas CG, Spate AM, Samuel MS, Spate LA, Warren WC, Prather RS, Wells KD. Transgenic Research; 29(4):395-407.
Date published:
August 1, 2020
Featured in this article:
Wes Warren.
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Neuronal ceroid lipofuscinosis in a domestic cat associated with a DNA sequence variant that creates a premature stop codon in CLN6. Katz ML, Buckley RM, Biegen V, O'Brien DP, Johnson GC, Warren WC, Lyons LA. G3: Genes, Genomes, Genetics; 10(8):2741-2751.
Date published:
August 1, 2020
Featured in this article:
Wes Warren.
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The BADC and BCCP subunits of chloroplast acetyl-CoA carboxylase sense the pH changes of the light-dark cycle. Ye Y, Fulcher YG, Sliman DJ, Day MT, Schroeder MJ, Koppisetti RK, Bates PD, Thelen JJ, van Doren SR. Journal of Biological Chemistry; 295(29):9901-9916.
Date published:
July 17, 2020
Featured in this article:
Jay Thelen.
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Untangling the ties that bind different systemic signals in plants. Fichman Y, Zandalinas SI, Mittler R. Science Signaling; 13(640):eabb9505.
Date published:
July 14, 2020
Featured in this article:
Ron Mittler.
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Xa1 Allelic R Genes Activate Rice Blight Resistance Suppressed by Interfering TAL Effectors. Ji C, Ji Z, Liu B, Cheng H, Liu H, Liu S, Yang B, Chen G. Plant Communications; 1(4):100087.
Date published:
July 13, 2020
Featured in this article:
Bing Yang.
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Current status of the multinational Arabidopsis community. Parry G, Provart NJ, Brady SM, Uzilday B, Adams K, Araújo W, Aubourg S, Baginsky S, Bakker E, Bärenfaller K, Batley J, Beale M, Beilstein M, Belkhadir Y, Mendel G, Berardini T, Bergelson J, Blanco-Herrera F, Brady S, Braun H-P, Briggs S, Brownfield L, Cardarelli M, Castellanos-Uribe M, Coruzzi G, Dassanayake M, De Jaeger G, Dilkes B, Doherty C, Ecker J, Edger P, Edwards D, El Kasmi F, Eriksson M, Exposito-Alonso M, Falter-Braun P, Fernie A, Ferro M, Fiehn O, Friesner J, Greenham K, Guo Y, Hamann T, Hancock A, Hauser M-T, Heazlewood J, Ho C-H, Hõrak H, Huala E, Hwang I, Iuchi S, Jaiswal P, Jakobson L, Jiang Y, Jiao Y, Jones A, Kadota Y, Khurana J, Kliebenstein D, Knee E, Kobayashi M, Koch M, Krouk G, Larson T, Last R, Lepiniec L, Li S, Lurin C, Lysak M, Maere S, Malinowski R, Maumus F, May S, Mayer K, Mendoza-Cozatl D, Mendoza-Poudereux I, Micol JL, Millar H, Mock H-P, Mukhtar K, Mukhtar S, Murcha M, Nakagami H, Nakamura Y, Nicolov L, Nikolau B, Nowack M, Nunes-Nesi A, Palmgren M, Parry G, Patron N, Peck S, Pedmale U, Perrot-Rechenmann C, Pieruschka R, Pío-Beltrán J, Pires JC, Provart N, Rajjou L, Reiser L, Rhee S, Rigas S, Rolland N, Romanowski A, Savaldi-Goldstein S, Schmitz R, Schulze W, Seki M, Shimizu KK, Slotkin K, Small I, Somers D, Sozzani R, Spillane C, Srinivasan R, Taylor N, Tello-Ruiz M-K, Thelen J, Tohge T, Town C, Toyoda T, Uzilday B, Walley J, Ware D, Weckwerth W, Whitelegge J, Wienkoop S, Wright C, Wrzaczek M, Yamazaki M, Yanovsky M, Žárský V, Zhong X, Van De Peer Y, Van Wijk K, Von Gillhaussen P, The Multinational Arabidopsis Steering Committee. Plant Direct; 4(7):e00248.
Date published:
July 1, 2020
Featured in this article:
David Mendoza-Cózatl,
Scott Peck,
,
Jay Thelen.
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Arabidopsis lectin receptor kinase P2K2 is a second plant receptor for extracellular atp and contributes to innate immunity. Pham AQ, Cho S-H, Nguyen CT, Stacey G. Plant Physiology; 183(3):1364-1375.
Date published:
July 1, 2020
Featured in this article:
Gary Stacey.
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Protein Precipitation to Remove Carbohydrates that Interfere in Protein-Bound Tryptophan Quantification in Soybean Seeds. Lei Z, Kumar S, Sarma SJ, Kumar R, Sumner BW, Stacey MG, Sumner LW. Journal of Analysis and Testing; 4(3):238-247.
Date published:
July 1, 2020
Featured in this article:
Minviluz (Bing) Stacey,
Lloyd Sumner.
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Two New Heuristic Methods for Protein Model Quality Assessment. Wang W, Wang J, Xu D, Shang Y. IEEE/ACM Transactions on Computational Biology and Bioinformatics; 17(4):1430-1439.
Date published:
July 1, 2020
Featured in this article:
Dong Xu.
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Disruption of miRNA sequences by TALENs and CRISPR/Cas9 induces varied lengths of miRNA production. Bi H, Fei Q, Li R, Liu B, Xia R, Char SN, Meyers BC, Yang B. Plant Biotechnology Journal; 18(7):1526-1536.
Date published:
July 1, 2020
Featured in this article:
Bing Yang.
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Integration of genomics, metagenomics, and metabolomics to identify interplay between susceptibility alleles and microbiota in adenoma initiation. Moskowitz JE, Doran AG, Lei Z, Busi SB, Hart ML, Franklin CL, Sumner LW, Keane TM, Amos-Landgraf JM. BMC Cancer; 20(1):600.
Date published:
June 29, 2020
Featured in this article:
Lloyd Sumner.
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Production and Selection of Quality Protein Popcorn Hybrids Using a Novel Ranking System and Combining Ability Estimates. Parsons L, Ren Y, Yobi A, Hurst P, Angelovici R, Rodriguez O, Holding DR. Frontiers in Plant Science; 11:698.
Date published:
June 23, 2020
Featured in this article:
Ruthie Angelovici.
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Minor snRNA gene delivery improves the loss of proprioceptive synapses on SMA motor neurons. Osman EY, van Alstyne M, Yen P-F, Lotti F, Feng Z, Ling KKY, Ko C-P, Pellizzoni L, Lorson CL. JCI Insight; 5(12):e130574.
Date published:
June 18, 2020
Featured in this article:
Christian Lorson.
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CRISPR/Cas9-Based Gene Editing Using Egg Cell-Specific Promoters in Arabidopsis and Soybean. Zheng N, Li T, Dittman JD, Su J, Li R, Gassmann W, Peng D, Whitham SA, Liu S, Yang B. Frontiers in Plant Science; 11:800.
Date published:
June 16, 2020
Featured in this article:
Walter Gassmann,
Bing Yang.
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Systemic signaling during abiotic stress combination in plants. Zandalinas SI, Fichman Y, Devireddy AR, Sengupta S, Azad RK, Mittler R. Proceedings of the National Academy of Sciences of the United States of America; 117(24):13810-13820.
Date published:
June 16, 2020
Featured in this article:
Ron Mittler.
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Genomic Origin and Diversification of the Glucosinolate MAM Locus. Abrahams RS, Pires JC, Schranz ME. Frontiers in Plant Science; 11:711.
Date published:
June 4, 2020
Featured in this article:
.
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Mutations in the Kinesin-2 Motor KIF3B Cause an Autosomal-Dominant Ciliopathy. Cogné B, Latypova X, Senaratne LDS, Martin L, Koboldt DC, Kellaris G, Fievet L, Le Meur G, Caldari D, Debray D, Nizon M, Frengen E, Bowne SJ, Buckley RM, Aberdein D, Alves PC, Barsh GS, Bellone RR, Bergström TF, Boyko AR, Brockman JA, Casal ML, Castelhano MG, Distl O, Dodman NH, Ellinwood NM, Fogle JE, Forman OP, Garrick DJ, Ginns EI, Häggström J, Harvey RJ, Hasegawa D, Haase B, Helps CR, Hernandez I, Hytönen MK, Kaukonen M, Kaelin CB, Kosho T, Leclerc E, Lear TL, Leeb T, Li RHL, Lohi H, Longeri M, Magnuson MA, Malik R, Mane SP, Munday JS, Murphy WJ, Pedersen NC, Rothschild MF, Rusbridge C, Shapiro B, Stern JA, Swanson WF, Terio KA, Todhunter RJ, Warren WC, Wilcox EA, Wildschutte JH, Yu Y, Cadena EL, Daiger SP, Bujakowska KM, Pierce EA, Gorin M, Katsanis N, Bézieau S, Petersen-Jones SM, Occelli LM, Lyons LA, Legeai-Mallet L, Sullivan LS, Davis EE, Isidor B. American Journal of Human Genetics; 106(6):893-904.
Date published:
June 4, 2020
Featured in this article:
Wes Warren.
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MGWAS uncovers Gln-glucosinolate seed-specific interaction and its role in metabolic homeostasis. Slaten ML, Yobi A, Bagaza C, Chan YO, Shrestha V, Holden S, Katz E, Kanstrup C, Lipka AE, Kliebenstein DJ, Nour-Eldin HH, Angelovici R. Plant Physiology; 183(2):483-500.
Date published:
June 1, 2020
Featured in this article:
Ruthie Angelovici.
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Sex-mediated elevation of the specialized pro-resolving lipid mediator levels in a Sjögren’s syndrome mouse model. Parashar K, Schulte F, Hardt M, Baker OJ. FASEB Journal; 34(6):7733-7744.
Date published:
June 1, 2020
Featured in this article:
Olga Baker.
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Rapid systemic signaling during abiotic and biotic stresses: is the ROS wave master of all trades?. Fichman Y, Mittler R. Plant Journal; 102(5):887-896.
Date published:
June 1, 2020
Featured in this article:
Ron Mittler.
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Environmental factor(s) and animal vector(s) associated with atypical Aeromonas hydrophila abundance and dissemination among channel catfish ponds. Cunningham FL, Hanson-Dorr KC, Ford L, Middleton DR, Crain A, Durst L, Ware C, Griffin MJ, Mischke CC, Wan X-F, Hanson LA. Journal of the World Aquaculture Society; 51(3):750-762.
Date published:
June 1, 2020
Featured in this article:
XiuFeng “Henry” Wan.
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HA stabilization promotes replication and transmission of swine H1N1 gamma influenza viruses in ferrets. Hu M, Yang G, De Beauchamp J, Crumpton JC, Kim H, Li L, Wan X-F, Kercher L, Bowman AS, Webster RG, Webby RJ, Russell CJ. eLife; 9:1-23.
Date published:
June 1, 2020
Featured in this article:
XiuFeng “Henry” Wan.
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The sterlet sturgeon genome sequence and the mechanisms of segmental rediploidization. Du K, Stöck M, Kneitz S, Klopp C, Woltering JM, Adolfi MC, Feron R, Prokopov D, Makunin A, Kichigin I, Schmidt C, Fischer P, Kuhl H, Wuertz S, Gessner J, Kloas W, Cabau C, Iampietro C, Parrinello H, Tomlinson C, Journot L, Postlethwait JH, Braasch I, Trifonov V, Warren WC, Meyer A, Guiguen Y, Schartl M. Nature Ecology and Evolution; 4(6):841-852.
Date published:
June 1, 2020
Featured in this article:
Wes Warren.
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Werewolf, there wolf: Variants in hairless associated with hypotrichia and roaning in the lykoi cat breed. Buckley RM, Gandolfi B, Creighton EK, Pyne CA, Bouhan DM, Leroy ML, Senter DA, Gobble JR, Abitbol M, Lyons LA, Lyons LA, Buckley RM, Aberdein D, Garrick DJ, Munday JS, Alves PC, Barsh GS, Kaelin CB, Bellone RR, Bergström TF, Boyko AR, Brockman JA, Casal ML, Castelhano MG, Todhunter RJ, Wilcox EA, Distl O, Dodman NH, Ellinwood NM, Rothschild MF, Fogle JE, Forman OP, Ginns EI, Häggström J, Harvey RJ, Hasegawa D, Yu Y, Haase B, Helps CR, Hernandez I, Hytönen MK, Kaukonen M, Lohi H, Kosho T, Leclerc E, Lear TL, Leeb T, Li RHL, Longeri M, Magnuson MA, Malik R, Mane SP, Murphy WJ, Pedersen NC, Stern JA, Peterson-Jones SM, Rusbridge C, Shapiro B, Swanson WF, Terio KA, Warren WC, Wildschutte JH. Genes; 11(6):1-15.
Date published:
June 1, 2020
Featured in this article:
Wes Warren.
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A deletion in GDF7 is associated with a heritable forebrain commissural malformation concurrent with ventriculomegaly and interhemispheric cysts in cats. Yu Y, Creighton EK, Buckley RM, Lyons LA, Buckley RM, Aberdein D, Alves PC, Barsh GS, Bellone RR, Bergström TF, Boyko AR, Brockman JA, Casal ML, Castelhano MG, Distl O, Dodman NH, Ellinwood NM, Fogle JE, Forman OP, Garrick DJ, Ginns EI, Häggström J, Harvey RJ, Hasegawa D, Haase B, Helps CR, Hernandez I, Hytönen MK, Kaukonen M, Kaelin CB, Kosho T, Leclerc E, Lear TL, Leeb T, Li RHL, Lohi H, Longeri M, Magnuson MA, Malik R, Mane SP, Munday JS, Murphy WJ, Pedersen NC, Peterson-Jones SM, Rothschild MF, Rusbridge C, Shapiro B, Stern JA, Swanson WF, Terio KA, Todhunter RJ, Warren WC, Wilcox EA, Wildschutte JH, Yu Y, Lyons LA. Genes; 11(6):1-15.
Date published:
June 1, 2020
Featured in this article:
Wes Warren.
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Overcoming Wnt–β-catenin dependent anticancer therapy resistance in leukaemia stem cells. Perry JM, Tao F, Roy A, Lin T, He XC, Chen S, Lu X, Nemechek J, Ruan L, Yu X, Dukes D, Moran A, Pace J, Schroeder K, Zhao M, Venkatraman A, Qian P, Li Z, Hembree M, Paulson A, He Z, Xu D, Tran T-H, Deshmukh P, Nguyen CT, Kasi RM, Ryan R, Broward M, Ding S, Guest E, August K, Gamis AS, Godwin A, Sittampalam GS, Weir SJ, Li L. Nature Cell Biology; 22(6):689-700.
Date published:
June 1, 2020
Featured in this article:
Dong Xu.
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Use of CRISPR/Cas9 for Targeted Mutagenesis in Sorghum. Char SN, Lee H, Yang B. Current protocols in plant biology; 5(2):e20112.
Date published:
June 1, 2020
Featured in this article:
Bing Yang.
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Single-Cell Metabolic Profiling: Metabolite Formulas from Isotopic Fine Structures in Heterogeneous Plant Cell Populations. Samarah LZ, Khattar R, Tran TH, Stopka SA, Brantner CA, Parlanti P, Veličković D, Shaw JB, Agtuca BJ, Stacey G, Paša-Tolić L, Tolić N, Anderton CR, Vertes A. Analytical Chemistry; 92(10):7289-7298.
Date published:
May 19, 2020
Featured in this article:
Gary Stacey.
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In Vivo Chemical Analysis of Plant Sap from the Xylem and Single Parenchymal Cells by Capillary Microsampling Electrospray Ionization Mass Spectrometry. Samarah LZ, Tran TH, Stacey G, Vertes A. Analytical Chemistry; 92(10):7299-7306.
Date published:
May 19, 2020
Featured in this article:
Gary Stacey.
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Endoplasmic reticulum retention and degradation of a mutation in SLC6A1 associated with epilepsy and autism. Wang J, Poliquin S, Mermer F, Eissman J, Delpire E, Wang J, Shen W, Cai K, Li B-M, Li Z-Y, Xu D, Nwosu G, Flamm C, Liao W-P, Shi Y-W, Kang J-Q. Molecular Brain; 13(1):76.
Date published:
May 12, 2020
Featured in this article:
Dong Xu.
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Multi-task learning sparse group lasso: A method for quantifying antigenicity of influenza A(H1N1) virus using mutations and variations in glycosylation of Hemagglutinin. Li L, Chang D, Han L, Zhang X, Zaia J, Wan X-F. BMC Bioinformatics; 21(1):1DUMM.
Date published:
May 11, 2020
Featured in this article:
XiuFeng “Henry” Wan.
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Elesclomol alleviates Menkes pathology and mortality by escorting Cu to cuproenzymes in mice. Guthrie LM, Soma S, Yuan S, Silva A, Zulkifli M, Snavely TC, Greene HF, Nunez E, Lynch B, de Ville C, Shanbhag V, Lopez FR, Acharya A, Petris MJ, Kim B-E, Gohil VM, Sacchettini JC. Science; 368(6491):620-625.
Date published:
May 8, 2020
Featured in this article:
Michael Petris.
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The complex response of free and bound amino acids to water stress during the seed setting stage in Arabidopsis. Yobi A, Bagaza C, Batushansky A, Shrestha V, Emery ML, Holden S, Turner-Hissong S, Miller ND, Mawhinney TP, Angelovici R. Plant Journal; 102(4):838-855.
Date published:
May 1, 2020
Featured in this article:
Ruthie Angelovici.
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Adaptive responses of amino acid metabolism to the combination of desiccation and low nitrogen availability in Sporobolus stapfianus. Yobi A, Batushansky A, Oliver MJ, Angelovici R. Planta; 249(5):1535-1549.
Date published:
May 1, 2020
Featured in this article:
Ruthie Angelovici.
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Sex-dependent Regeneration Patterns in Mouse Submandibular Glands. Brown CT, Nam K, Zhang Y, Qiu Y, Dean SM, Dos Santos HT, Lei P, Andreadis ST, Baker OJ. Journal of Histochemistry and Cytochemistry; 68(5):305-318.
Date published:
May 1, 2020
Featured in this article:
Olga Baker.
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Mapping the metal-catalytic site of a zinc-activated phytochelatin synthase. García-García JD, Sánchez-Thomas R, Saavedra E, Fernández-Velasco DA, Romero-Romero S, Casanova-Figueroa KI, Mendoza-Cózatl DG, Moreno-Sánchez R. Algal Research; 47:101890.
Date published:
May 1, 2020
Featured in this article:
David Mendoza-Cózatl.
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Feasibility of known rna polymerase inhibitors as anti-sars-cov-2 drugs. Neogi U, Hill KJ, Ambikan AT, Heng X, Quinn TP, Byrareddy SN, Sönnerborg A, Sarafianos SG, Singh K. Pathogens; 9(5):320.
Date published:
May 1, 2020
Featured in this article:
Kamlendra Singh.
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Role of cytosolic, tyrosine-insensitive prephenate dehydrogenase in Medicago truncatula. Schenck CA, Westphal J, Jayaraman D, Garcia K, Wen J, Mysore KS, Ané J-M, Sumner LW, Maeda HA. Plant Direct; 4(5):e00218.
Date published:
May 1, 2020
Featured in this article:
Lloyd Sumner.
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Multi-targeted trehalose-6-phosphate phosphatase I harbors a novel peroxisomal targeting signal 1 and is essential for flowering and development. Kataya ARA, Elshobaky A, Heidari B, Dugassa N-F, Thelen JJ, Lillo C. Planta; 251(5):98.
Date published:
May 1, 2020
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Jay Thelen.
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Are pangolins the intermediate host of the 2019 novel coronavirus (SARS-CoV-2)?. Liu P, Jiang J-Z, Wan X-F, Hua Y, Li L, Zhou J, Wang X, Hou F, Chen J, Zou J, Chen J. PLoS Pathogens; 16(5):e1008421.
Date published:
May 1, 2020
Featured in this article:
XiuFeng “Henry” Wan.
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Achieving Plant Genome Editing While Bypassing Tissue Culture. Ji X, Yang B, Wang D. Trends in Plant Science; 25(5):427-429.
Date published:
May 1, 2020
Featured in this article:
Bing Yang.
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Detecting Cancer Survival Related Gene Markers Based on Rectified Factor Network. Su L, Liu G, Wang J, Gao J, Xu D. Frontiers in Bioengineering and Biotechnology; 8:349.
Date published:
April 23, 2020
Featured in this article:
Dong Xu.
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Can metabolic tightening and expansion of co-expression network play a role in stress response and tolerance?. Fait A, Batushansky A, Shrestha V, Yobi A, Angelovici R. Plant Science; 293:110409.
Date published:
April 1, 2020
Featured in this article:
Ruthie Angelovici.
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Predictive modeling of aspirin-triggered resolvin D1 pharmacokinetics for the study of Sjögren’s syndrome. Yellepeddi VK, Baker OJ. Clinical and Experimental Dental Research; 6(2):225-235.
Date published:
April 1, 2020
Featured in this article:
Olga Baker.
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EPSIN1 modulates the plasma membrane abundance of FLAGELLIN SENSING2 for effective immune responses. Collins CA, LaMontagne ED, Anderson JC, Ekanayake G, Clarke AS, Bond LN, Salamango DJ, Cornish PV, Peck SC, Heese A. Plant Physiology; 182(4):1762-1775.
Date published:
April 1, 2020
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Scott Peck.
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Independent evolution of ancestral and novel defenses in a genus of toxic plants (Erysimum, brassicaceae). Züst T, Strickler SR, Powell AF, Mabry ME, An H, Mirzaei M, York T, Holland CK, Kumar P, Erb M, Petschenka G, Gómez J-M, Perfectti F, Müller C, Pires JC, Mueller LA, Jander G. eLife; 9:e51712.
Date published:
April 1, 2020
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.
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Evolutionary insights into plant breeding. Turner-Hissong SD, Mabry ME, Beissinger TM, Ross-Ibarra J, Pires JC. Current Opinion in Plant Biology; 54:93-100.
Date published:
April 1, 2020
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.
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Epha7 promotes myogenic differentiation via cell-cell contact. Arnold LL, Cecchini A, Stark DA, Ihnat J, Craigg RN, Carter A, Zino S, Cornelison DDW. eLife; 9:e53689.
Date published:
April 1, 2020
Featured in this article:
D Cornelison.
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Identification of health-promoting bioactive phenolics in black walnut using cloud-based metabolomics platform. Vu DC, Park J, Ho K-V, Sumner LW, Lei Z, Greenlief CM, Mooney B, Coggeshall MV, Lin C-H. Journal of Food Measurement and Characterization; 14(2):770-777.
Date published:
April 1, 2020
Featured in this article:
Lloyd Sumner.
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Use of a human embryonic stem cell model to discover GABRP, WFDC2, VTCN1 and ACTC1 as markers of early first trimester human trophoblast. Karvas RM, McInturf S, Zhou J, Ezashi T, Schust DJ, Roberts RM, Schulz LC. Human Molecular Reproduction; 26(6):425-440.
Date published:
April 1, 2020
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.
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Drug Resistance Mutations Against Protease, Reverse Transcriptase and Integrase Inhibitors in People Living With HIV-1 Receiving Boosted Protease Inhibitors in South Africa. Obasa AE, Mikasi SG, Brado D, Cloete R, Singh K, Neogi U, Jacobs GB. Frontiers in Microbiology; 11:438.
Date published:
March 20, 2020
Featured in this article:
Kamlendra Singh.
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Binding interface and impact on protease cleavage for an RNA aptamer to HIV-1 reverse transcriptase. Nguyen PDM, Zheng J, Gremminger TJ, Qiu L, Zhang D, Tuske S, Lange MJ, Griffin PR, Arnold E, Chen S-J, Zou X, Heng X, Burke DH. Nucleic Acids Research; 48(5):2709-2722.
Date published:
March 18, 2020
Featured in this article:
Donald Burke-Agüero.
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Engineering the mode of morphogenetic signal presentation to promote branching from salivary gland spheroids in 3D hydrogels. Samuel RZ, Lei P, Nam K, Baker OJ, Andreadis ST. Acta Biomaterialia; 105:121-130.
Date published:
March 15, 2020
Featured in this article:
Olga Baker.
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P2 Receptors as Therapeutic Targets in the Salivary Gland: From Physiology to Dysfunction. Khalafalla MG, Woods LT, Jasmer KJ, Forti KM, Camden JM, Jensen JL, Limesand KH, Galtung HK, Weisman GA. Frontiers in Pharmacology; 11:222.
Date published:
March 13, 2020
Featured in this article:
Gary Weisman.
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From element to development: The power of the essential micronutrient boron to shape morphological processes in plants. Matthes MS, Robil JM, McSteen P. Journal of Experimental Botany; 71(5):1681-1693.
Date published:
March 12, 2020
Featured in this article:
Paula McSteen.
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Signal transduction networks during stress combination. Zandalinas SI, Fritschi FB, Mittler R. Journal of Experimental Botany; 71(5):1734-1741.
Date published:
March 12, 2020
Featured in this article:
Ron Mittler.
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Plant signaling in biotic and abiotic stress. Peck S, Mittler R. Journal of Experimental Botany; 71(5):1649-1651.
Date published:
March 12, 2020
Featured in this article:
Scott Peck,
Ron Mittler.
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The role of microRNAs in the legume-Rhizobium nitrogen-fixing symbiosis. Hoang NT, Tóth K, Stacey G. Journal of Experimental Botany; 71(5):1668-1680.
Date published:
March 12, 2020
Featured in this article:
Gary Stacey.
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Correction: Evidence for plant-derived xenomiRs based on a large-scale analysis of public small RNA sequencing data from human samples (PLOS ONE (2019) 14:10 (e0224537) DOI: 10.1371/journal.pone.0224537). Zhao Q, Liu Y, Zhang N, Hu M, Zhang H, Joshi T, Xu D. PLoS ONE; 15(3):e0230146.
Date published:
March 11, 2020
Featured in this article:
Trupti Joshi,
Dong Xu.
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Identification and Quantification of Bioactive Molecules Inhibiting Pro-inflammatory Cytokine Production in Spent Coffee Grounds Using Metabolomics Analyses. Ho K-V, Schreiber KL, Park J, Vo PH, Lei Z, Sumner LW, Brown CR, Lin C-H. Frontiers in Pharmacology; 11:229.
Date published:
March 6, 2020
Featured in this article:
Lloyd Sumner.
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Bisphenol A and bisphenol S disruptions of the mouse placenta and potential effects on the placenta-brain axis. Mao J, Jain A, Denslow ND, Nouri M-Z, Chen S, Wang T, Zhu N, Koh J, Sarma SJ, Sumner BW, Lei Z, Sumner LW, Bivens NJ, Michael Roberts R, Tuteja G, Rosenfeld CS. Proceedings of the National Academy of Sciences of the United States of America; 117(9):4642-4652.
Date published:
March 3, 2020
Featured in this article:
Lloyd Sumner,
.
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Tumor-cell–macrophage fusion cells as liquid biomarkers and tumor enhancers in cancer. Manjunath Y, Porciani D, Mitchem JB, Suvilesh KN, Avella DM, Kimchi ET, Staveley-o’carroll KF, Burke DH, Li G, Kaifi JT. International Journal of Molecular Sciences; 21(5):1872.
Date published:
March 1, 2020
Featured in this article:
Donald Burke-Agüero.
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Changes in mammalian copper homeostasis during microbial infection. Culbertson EM, Khan AA, Muchenditsi A, Lutsenko S, Sullivan DJ, Petris MJ, Cormack BP, Culotta VC. Metallomics; 12(3):416-426.
Date published:
March 1, 2020
Featured in this article:
Michael Petris.
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Expression of a dominant-negative AtNEET-H89C protein disrupts iron–sulfur metabolism and iron homeostasis in Arabidopsis. Zandalinas SI, Song L, Sengupta S, McInturf SA, Grant DG, Marjault H-B, Castro-Guerrero NA, Burks D, Azad RK, Mendoza-Cozatl DG, Nechushtai R, Mittler R. Plant Journal; 101(5):1152-169.
Date published:
March 1, 2020
Featured in this article:
David Mendoza-Cózatl,
Ron Mittler.
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Enhanced CXCR4 expression associates with increased gene body 5-hydroxymethylcytosine modification but not decreased promoter methylation in colorectal cancer. Stuckel AJ, Zhang W, Zhang X, Zeng S, Dougherty U, Mustafi, Zhang Q, Perreand E, Khare T, Joshi T, West-Szymanski DC, Bissonnette M, Khare S. Cancers; 12(3):539.
Date published:
March 1, 2020
Featured in this article:
Trupti Joshi.
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Nontargeted fecal metabolomics: An emerging tool to probe the role of the gut microbiome in host health. Sarma SJ, Lei Z, Rosenfeld CS, Ericsson A, Sumner LW. Bioanalysis; 12(6):351-353.
Date published:
March 1, 2020
Featured in this article:
Lloyd Sumner.
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Global warming and shifts in cropping systems together reduce China’s rice production. Chen C, van Groenigen KJ, Yang H, Hungate BA, Yang B, Tian Y, Chen J, Dong W, Huang S, Deng A, Jiang Y, Zhang W. Global Food Security; 24:100359.
Date published:
March 1, 2020
Featured in this article:
Bing Yang.
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Effect of prepartum energy intake and supplementation with ruminally protected choline on innate and adaptive immunity of multiparous Holstein cows. Zenobi MG, Gardinal R, Zuniga JE, Mamedova LK, Driver JP, Barton BA, Santos JEP, Staples CR, Nelson CD. Journal of Dairy Science; 103(3):2200-2216.
Date published:
March 1, 2020
Featured in this article:
John Driver.
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A self-attention based message passing neural network for predicting molecular lipophilicity and aqueous solubility. Tang B, Kramer ST, Fang M, Qiu Y, Wu Z, Xu D. Journal of Cheminformatics; 12(1):15.
Date published:
February 21, 2020
Featured in this article:
Dong Xu.
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IMPRes-Pro: A high dimensional multiomics integration method for in silico hypothesis generation. Jiang Y, Wang D, Xu D, Joshi T. Methods; 173:16-23.
Date published:
February 15, 2020
Featured in this article:
Dong Xu,
Trupti Joshi.
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MUFold-SSW: A new web server for predicting protein secondary structures, torsion angles and turns. Fang C, Li Z, Xu D, Shang Y. Bioinformatics; 36(4):1293-1295.
Date published:
February 15, 2020
Featured in this article:
Dong Xu.
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Corrigendum: Characterization of the Spatial and Temporal Expression of Two Soybean miRNAs Identifies SCL6 as a Novel Regulator of Soybean Nodulation (Frontiers in Plant Science, (2019), 10, 10.3389/fpls.2019.00475). Hossain MS, Hoang NT, Yan Z, Tóth K, Meyers BC, Stacey G. Frontiers in Plant Science; 10:1692.
Date published:
February 12, 2020
Featured in this article:
Gary Stacey.
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The quail genome: Insights into social behaviour, seasonal biology and infectious disease response. Morris KM, Hindle MM, Boitard S, Burt DW, Danner AF, Eory L, Forrest HL, Gourichon D, Gros J, Hillier LW, Jaffredo T, Khoury H, Lansford R, Leterrier C, Loudon A, Mason AS, Meddle SL, Minvielle F, Minx P, Pitel F, Seiler JP, Shimmura T, Tomlinson C, Vignal A, Webster RG, Yoshimura T, Warren WC, Smith J. BMC Biology; 18(1):14.
Date published:
February 12, 2020
Featured in this article:
Wes Warren.
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Assessment of a18f-phenylboronic acid radiotracer for imaging boron in maize. Housh AB, Matthes MS, Gerheart A, Wilder SL, Kil K-E, Schueller M, Guthrie JM, McSteen P, Ferrieri R. International Journal of Molecular Sciences; 21(3):976.
Date published:
February 1, 2020
Featured in this article:
Paula McSteen.
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A 50K SNP array reveals genetic structure for bald eagles (Haliaeetus leucocephalus). Judkins ME, Couger BM, Warren WC, Van Den Bussche RA. Conservation Genetics; 21(1):65-76.
Date published:
February 1, 2020
Featured in this article:
Wes Warren.
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An Agrobacterium-delivered CRISPR/Cas9 system for targeted mutagenesis in sorghum. Char SN, Wei J, Mu Q, Li X, Zhang ZJ, Yu J, Yang B. Plant Biotechnology Journal; 18(2):319-321.
Date published:
February 1, 2020
Featured in this article:
Bing Yang.
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Genome-wide association study identifies QTLs conferring salt tolerance in rice. An H, Liu K, Wang B, Tian Y, Ge Y, Zhang Y, Tang W, Chen G, Yu J, Wu W, Liu X, Zhao Y, Li J, Zhang H, Yang B, Jiang X, Peng C, Zhou C, Zhu C, Wang C, Wan J. Plant Breeding; 139(1):73-82.
Date published:
February 1, 2020
Featured in this article:
Bing Yang.
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Structures of immature EIAV Gag lattices reveal a conserved role for IP6 in lentivirus assembly. Dick RA, Xu C, Morado DR, Kravchuk V, Ricana CL, Lyddon TD, Broad AM, Feathers JR, Johnson MC, Vogt VM, Perilla JR, Briggs JAG, Schur FKM. PLoS Pathogens; 16(1):e1008277.
Date published:
January 27, 2020
Featured in this article:
Marc Johnson.
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The maize heterotrimeric G protein β subunit controls shoot meristem development and immune responses. Wu Q, Xu F, Liu L, Char SN, Ding Y, Je BI, Schmelz E, Yang B, Jackson D. Proceedings of the National Academy of Sciences of the United States of America; 117(3):1799-1805.
Date published:
January 21, 2020
Featured in this article:
Bing Yang.
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Using Tomato Recombinant Lines to Improve Plant Tolerance to Stress Combination Through a More Efficient Nitrogen Metabolism. Lopez-Delacalle M, Camejo DM, García-Martí M, Nortes PA, Nieves-Cordones M, Martínez V, Rubio F, Mittler R, Rivero RM. Frontiers in Plant Science; 10:1702.
Date published:
January 17, 2020
Featured in this article:
Ron Mittler.
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Security-aware Resource Brokering for Bioinformatics Workflows across Federated Multi-cloud Infrastructures. Nguyen M, Debroy S, Calyam P, Lyu Z, Joshi T. ACM International Conference Proceeding Series; F165625:3369791.
Date published:
January 4, 2020
Featured in this article:
Zhen Lyu,
Trupti Joshi.
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Proteomic and Metabolomic Analysis of Azospirillum brasilense ntrC Mutant under High and Low Nitrogen Conditions. Kukolj C, Pedrosa FO, De Souza GA, Sumner LW, Lei Z, Sumner B, Do Amaral FP, Juexin W, Trupti J, Huergo LF, Monteiro RA, Valdameri G, Stacey G, De Souza EM. Journal of Proteome Research; 19(1):92-105.
Date published:
January 3, 2020
Featured in this article:
Lloyd Sumner,
Trupti Joshi,
Gary Stacey.
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Therapeutic peptide delivery: Via aptamer-displaying, disulfide-linked peptide amphiphile micelles. Smith JD, Cardwell LN, Porciani D, Nolla A, Cornelison BT, Schulte MC, Gallazzi F, Burke DH, Daniels MA, Ulery BD. Molecular Systems Design and Engineering; 5(1):269-283.
Date published:
January 1, 2020
Featured in this article:
Donald Burke-Agüero.
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Coordinated and rapid whole-plant systemic stomatal responses. Devireddy AR, Arbogast J, Mittler R. New Phytologist; 225(1):21-25.
Date published:
January 1, 2020
Featured in this article:
Ron Mittler.
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A revised model for the role of GacS/GacA in regulating type III secretion by Pseudomonas syringae pv. tomato DC3000. O’Malley MR, Chien C-F, Peck SC, Lin N-C, Anderson JC. Molecular Plant Pathology; 21(1):139-144.
Date published:
January 1, 2020
Featured in this article:
Scott Peck.
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A dynamic programing approach to integrate gene expression data and network information for pathway model generation. Jiang Y, Liang Y, Wang D, Xu D, Joshi T. Bioinformatics; 36(1):169-176.
Date published:
January 1, 2020
Featured in this article:
Dong Xu,
Trupti Joshi.
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Hypothalamic transcriptome of tame and aggressive silver foxes (Vulpes vulpes) identifies gene expression differences shared across brain regions. Rosenfeld CS, Hekman JP, Johnson JL, Lyu Z, Ortega MT, Joshi T, Mao J, Vladimirova AV, Gulevich RG, Kharlamova AV, Acland GM, Hecht EE, Wang X, Clark AG, Trut LN, Behura SK, Kukekova AV. Genes, Brain and Behavior; 19(1):e12614.
Date published:
January 1, 2020
Featured in this article:
Trupti Joshi.
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Mice lacking uterine enhancer of zeste homolog 2 have transcriptomic changes associated with uterine epithelial proliferation. Mesa AM, Mao J, Nanjappa MK, Medrano TI, Tevosian S, Yu F, Kinkade J, Lyu Z, Liu Y, Joshi T, Wang D, Rosenfeld CS, Cooke PS. Physiological Genomics; 52(2):81-95.
Date published:
January 1, 2020
Featured in this article:
Trupti Joshi.
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Inductive inference of gene regulatory network using supervised and semi-supervised graph neural networks. Wang J, Ma A, Ma Q, Xu D, Joshi T. Computational and Structural Biotechnology Journal; 18:3335-3343.
Date published:
January 1, 2020
Featured in this article:
Dong Xu,
Trupti Joshi.
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Dysregulation in Akt/mTOR/HIF-1 signaling identified by proteo-transcriptomics of SARS-CoV-2 infected cells. Appelberg S, Gupta S, Akusjärvi SS, Ambikan AT, Mikaeloff F, Saccon E, Végvári Á, Benfeitas R, Sperk M, Ståhlberg M, Krishnan S, Singh K, Penninger JM, Mirazimi A, Neogi U. Emerging Microbes and Infections; 1748-1760.
Date published:
January 1, 2020
Featured in this article:
Kamlendra Singh.
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In-situ metabolomic analysis of Setaria viridis roots colonized by beneficial endophytic bacteria. Agtuca BJ, Stopka SA, Tuleski TR, Do Amaral FP, Evan S, Liu Y, Xu D, Monteiro RA, Koppenaal DW, Paša-Tolić L, Anderton CR, Vertes A, Stacey G. Molecular Plant-Microbe Interactions; 33(2):272-283.
Date published:
January 1, 2020
Featured in this article:
Dong Xu,
Gary Stacey.
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Herbaspirillum rubrisubalbicans as a phytopathogenic model to study the immune system of Sorghum bicolor. Tuleski TR, Kimball J, Do Amaral FP, Pereira TP, Tadra-Sfeir MZ, De Oliveira Pedrosa F, De Souza EM, Balint-Kurti P, Monteiro RA, Stacey G. Molecular Plant-Microbe Interactions; 33(2):235-246.
Date published:
January 1, 2020
Featured in this article:
Gary Stacey.
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Generation of a collision cross section library for multi-dimensional plant metabolomics using UHPLC-trapped ion mobility-MS/MS. Schroeder M, Meyer SW, Heyman HM, Barsch A, Sumner LW. Metabolites; 10(1):13.
Date published:
January 1, 2020
Featured in this article:
Lloyd Sumner.
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Allelopathic potential of rice and identification of published allelochemicals by cloud-based metabolomics platform. Ho TL, Nguyen TTC, Vu DC, Nguyen NY, Nguyen TTT, Phong TNH, Nguyen CT, Lin C-H, Lei Z, Sumner LW, Le VV. Metabolites; 10(6):1-20.
Date published:
January 1, 2020
Featured in this article:
Lloyd Sumner.
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Inferring seasonal infection risk at population and regional scales from serology samples. Wilber MQ, Webb CT, Cunningham FL, Pedersen K, Wan X-F, Pepin KM. Ecology; 101(1):e02882.
Date published:
January 1, 2020
Featured in this article:
XiuFeng “Henry” Wan.
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A deep dense inception network for protein beta-turn prediction. Fang C, Shang Y, Xu D. Proteins: Structure, Function and Bioinformatics; 88(1):143-151.
Date published:
January 1, 2020
Featured in this article:
Dong Xu.
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Fuzzified Image Enhancement for Deep Learning in Iris Recognition. Liu M, Zhou Z, Shang P, Xu D. IEEE Transactions on Fuzzy Systems; 28(1):92-99.
Date published:
January 1, 2020
Featured in this article:
Dong Xu.
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Artificial intelligence-driven structurization of diagnostic information in free-text pathology reports. Giannaris P, Al-Taie Z, Kovalenko M, Thanintorn N, Kholod O, Innokenteva Y, Coberly E, Frazier S, Laziuk K, Popescu M, Shyu C-R, Xu D, Hammer R, Shin D. Journal of Pathology Informatics; 11(1):4.
Date published:
January 1, 2020
Featured in this article:
Dong Xu.
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An Improved Topology Prediction of Alpha-Helical Transmembrane Protein Based on Deep Multi-Scale Convolutional Neural Network. Yang Y, Yu J, Liu Z, Wang X, Wang H, Ma Z, Xu D. IEEE/ACM Transactions on Computational Biology and Bioinformatics; 1-10.
Date published:
January 1, 2020
Featured in this article:
Dong Xu.
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Transporters and ascorbate–glutathione metabolism for differential cadmium accumulation and tolerance in two contrasting willow genotypes. Han X, Zhang Y, Yu M, Zhang J, Xu D, Lu Z, Qiao G, Qiu W, Zhuo R. Tree Physiology; 40(8):1126-1142.
Date published:
January 1, 2020
Featured in this article:
Dong Xu.
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MU-PseUDeep: A deep learning method for prediction of pseudouridine sites. Khan SM, He F, Wang D, Chen Y, Xu D. Computational and Structural Biotechnology Journal; 18:1877-1883.
Date published:
January 1, 2020
Featured in this article:
Dong Xu.
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Considerations in adapting CRISPR/Cas9 in nongenetic model plant systems. Shan S, Soltis PS, Soltis DE, Yang B. Applications in Plant Sciences; 8(1):e11314.
Date published:
January 1, 2020
Featured in this article:
Bing Yang.
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2019
Knowledge Base Commons (KBCommons) v1.1: A universal framework for multi-omics data integration and biological discoveries. Zeng S, Lyu Z, Narisetti SRK, Xu D, Joshi T. BMC Genomics; 20:947.
Date published:
December 20, 2019
Featured in this article:
Dong Xu,
Trupti Joshi.
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Development of a novel severe mouse model of spinal muscular atrophy with respiratory distress type 1: FVB-nmd. Shababi M, Smith CE, Kacher M, Alrawi Z, Villalón E, Davis D, Bryda EC, Lorson CL. Biochemical and Biophysical Research Communications; 520(2):341-346.
Date published:
December 3, 2019
Featured in this article:
Christian Lorson.
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Using cell sheets to regenerate mouse submandibular glands. Nam K, Kim K, Dean SM, Brown CT, Davis RS, Okano T, Baker OJ. npj Regenerative Medicine; 4(1):16.
Date published:
December 1, 2019
Featured in this article:
Olga Baker.
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Diphtheria Toxin A-Resistant Cell Lines Enable Robust Production and Evaluation of DTA-Encoding Lentiviruses. Lange MJ, Lyddon TD, Johnson MC. Scientific Reports; 9(1):8985.
Date published:
December 1, 2019
Featured in this article:
Marc Johnson.
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Functional characterization of SMN evolution in mouse models of SMA. Osman EY, Bolding MR, Villalón E, Kaifer KA, Lorson ZC, Tisdale S, Hao Y, Conant GC, Pires JC, Pellizzoni L, Lorson CL. Scientific Reports; 9(1):9472.
Date published:
December 1, 2019
Featured in this article:
,
Christian Lorson.
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Intraperitoneal delivery of a novel drug‐like compound improves disease severity in severe and intermediate mouse models of Spinal Muscular Atrophy. Osman EY, Rietz A, Kline RA, Cherry JJ, Hodgetts KJ, Lorson CL, Androphy EJ. Scientific Reports; 9(1):1633.
Date published:
December 1, 2019
Featured in this article:
Christian Lorson.
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4-Coumarate 3-hydroxylase in the lignin biosynthesis pathway is a cytosolic ascorbate peroxidase. Barros J, Escamilla-Trevino L, Song L, Rao X, Serrani-Yarce JC, Palacios MD, Engle N, Choudhury FK, Tschaplinski TJ, Venables BJ, Mittler R, Dixon RA. Nature Communications; 10(1):1994.
Date published:
December 1, 2019
Featured in this article:
Ron Mittler.
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Comparative Phosphoproteomic Analysis Reveals a Decay of ABA Signaling in Barley Embryos during After-Ripening. Ishikawa S, Barrero JM, Takahashi F, Nakagami H, Peck SC, Gubler F, Shinozaki K, Umezawa T. Plant and Cell Physiology; 60(12):2758-2768.
Date published:
December 1, 2019
Featured in this article:
Scott Peck.
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Adipocyte-specific disruption of ATPase copper transporting α in mice accelerates lipoatrophy. Tao C, Wang Y, Zhao Y, Pan J, Fan Y, Liang X, Cao C, Zhao J, Petris MJ, Li K, Wang Y. Diabetologia; 62(12):2340-2353.
Date published:
December 1, 2019
Featured in this article:
Michael Petris.
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Transcriptome and organellar sequencing highlights the complex origin and diversification of allotetraploid Brassica napus. An H, Qi X, Gaynor ML, Hao Y, Gebken SC, Mabry ME, McAlvay AC, Teakle GR, Conant GC, Barker MS, Fu T, Yi B, Pires JC. Nature Communications; 10(1):2878.
Date published:
December 1, 2019
Featured in this article:
.
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Transcriptomics Analysis Reveals New Insights into the Roles of Notch1 Signaling on Macrophage Polarization. Hans CP, Sharma N, Sen S, Zeng S, Dev R, Jiang Y, Mahajan A, Joshi T. Scientific Reports; 9(1):7999.
Date published:
December 1, 2019
Featured in this article:
Trupti Joshi.
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Construction and comparison of three reference-quality genome assemblies for soybean. Valliyodan B, Cannon SB, Bayer PE, Shu S, Brown AV, Ren L, Jenkins J, Chung CYL, Chan T-E, Daum CG, Plott C, Hastie A, Baruch K, Barry KW, Huang W, Patil G, Varshney RK, Hu H, Batley J, Yuan Y, Song Q, Stupar RM, Goodstein DM, Stacey G, Lam H-M, Jackson SA, Schmutz J, Grimwood J, Edwards D, Nguyen HT. Plant Journal; 100(5):1066-1082.
Date published:
December 1, 2019
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Gary Stacey.
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Identification of QTL for Target Leaf Spot resistance in Sorghum bicolor and investigation of relationships between disease resistance and variation in the MAMP response. Kimball J, Cui Y, Chen D, Brown P, Rooney WL, Stacey G, Balint-Kurti PJ. Scientific Reports; 9(1):18285.
Date published:
December 1, 2019
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Gary Stacey.
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The neuraminidase of A(H3N2) influenza viruses circulating since 2016 is antigenically distinct from the A/Hong Kong/4801/2014 vaccine strain. Wan H, Gao J, Yang H, Yang S, Harvey R, Chen Y-Q, Zheng N-Y, Chang J, Carney PJ, Li X, Plant E, Jiang L, Couzens L, Wang C, Strohmeier S, Wu WW, Shen R-F, Krammer F, Cipollo JF, Wilson PC, Stevens J, Wan X-F, Eichelberger MC, Ye Z. Nature Microbiology; 4(12):2216-2225.
Date published:
December 1, 2019
Featured in this article:
XiuFeng “Henry” Wan.
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Application of the Transcriptional Disease Signature (TDSs) to Screen Melanoma-Effective Compounds in a Small Fish Model. Lu Y, Boswell W, Boswell M, Klotz B, Kneitz S, Regneri J, Savage M, Mendoza C, Postlethwait J, Warren WC, Schartl M, Walter RB. Scientific Reports; 9(1):530.
Date published:
December 1, 2019
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Wes Warren.
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Author Correction: Applications and efficiencies of the first cat 63K DNA array (Scientific Reports, (2018), 8, 1, (7024), 10.1038/s41598-018-25438-0). Gandolfi B, Alhaddad H, Abdi M, Bach LH, Creighton EK, Davis BW, Decker JE, Dodman NH, Grahn JC, Grahn RA, Haase B, Haggstrom J, Hamilton MJ, Helps CR, Kurushima JD, Lohi H, Longeri M, Malik R, Meurs KM, Montague MJ, Mullikin JC, Murphy WJ, Nilson SM, Pedersen NC, Peterson CB, Rusbridge C, Saif R, Shelton DG, Warren WC, Wasim M, Lyons LA. Scientific Reports; 9(1):4664.
Date published:
December 1, 2019
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Wes Warren.
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Can Designer Indels Be Tailored by Gene Editing?: Can Indels Be Customized?. Trimidal SG, Benjamin R, Bae JE, Han MV, Kong E, Singer A, Williams TS, Yang B, Schiller MR. BioEssays; 41(12):1900126.
Date published:
December 1, 2019
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Bing Yang.
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Genome-wide associated study identifies NAC42-activated nitrate transporter conferring high nitrogen use efficiency in rice. Tang W, Ye J, Yao X, Zhao P, Xuan W, Tian Y, Zhang Y, Xu S, An H, Chen G, Yu J, Wu W, Ge Y, Liu X, Li J, Zhang H, Zhao Y, Yang B, Jiang X, Peng C, Zhou C, Terzaghi W, Wang C, Wan J. Nature Communications; 10(1):5279.
Date published:
December 1, 2019
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Bing Yang.
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A six-inhibitor culture medium for improving naïve-type pluripotency of porcine pluripotent stem cells. Yuan Y, Park J, Tian Y, Choi J, Pasquariello R, Alexenko AP, Dai A, Behura SK, Roberts RM, Ezashi T. Cell Death Discovery; 5(1):104.
Date published:
December 1, 2019
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Phenotype Prediction and Genome-Wide Association Study Using Deep Convolutional Neural Network of Soybean. Liu Y, Wang D, He F, Wang J, Joshi T, Xu D. Frontiers in Genetics; 10:1091.
Date published:
November 22, 2019
Featured in this article:
Trupti Joshi,
Dong Xu.
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ESAE: Evolutionary Strategy-Based Architecture Evolution. Gu X, Meng Z, Liang Y, Xu D, Huang H, Han X, Wu C. Communications in Computer and Information Science; 1159 CCIS:193-208.
Date published:
November 22, 2019
Featured in this article:
Dong Xu.
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OnTimeURB: Multi-Cloud Resource Brokering for Bioinformatics Workflows. Pandey A, Lyu Z, Joshi T, Calyam P. Proceedings - 2019 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2019; 466-473.
Date published:
November 18, 2019
Featured in this article:
Zhen Lyu,
Trupti Joshi.
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Mutational Forks: Inferring Deregulated Flow of Signal Transduction Based on Patient-Specific Mutations. Kholod O, Lyu Z, Mitchem J, Tonellato P, Joshi T, Shin D. Proceedings - 2019 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2019; 2063-2068.
Date published:
November 18, 2019
Featured in this article:
Zhen Lyu,
Trupti Joshi.
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DMCTOP: Topology Prediction of Alpha-Helical Transmembrane Protein Based on Deep Multi-Scale Convolutional Neural Network. Wang H, Yang Y, Yu J, Wang X, Zhao D, Xu D, Sun P. Proceedings - 2019 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2019; 36-43.
Date published:
November 18, 2019
Featured in this article:
Dong Xu.
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Capsule Network for Predicting Zinc Binding Sites in Metalloproteins. Essien C, Wang D, Xu D. Proceedings - 2019 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2019; 2337-2341.
Date published:
November 18, 2019
Featured in this article:
Dong Xu.
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Extracting Molecular Entities and Their Interactions from Pathway Figures Based on Deep Learning. He F, Wang D, Innokenteva Y, Kholod O, Shin D, Xu D. Proceedings - 2019 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2019; 1191-1193.
Date published:
November 18, 2019
Featured in this article:
Dong Xu.
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AAV9-Stathmin1 gene delivery improves disease phenotype in an intermediate mouse model of spinal muscular atrophy. Villalón E, Kline RA, Smith CE, Lorson ZC, Osman EY, O'day S, Murray LM, Lorson CL. Human Molecular Genetics; 28(22):3742-3754.
Date published:
November 15, 2019
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Christian Lorson.
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Human-specific tandem repeat expansion and differential gene expression during primate evolution. Sulovari A, Li R, Audano PA, Porubsky D, Vollger MR, Logsdon GA, Warren WC, Pollen AA, Chaisson MJP, Eichler EE. Proceedings of the National Academy of Sciences of the United States of America; 116(46):23243-23253.
Date published:
November 12, 2019
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Wes Warren.
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Barium chloride injures myofibers through calcium-induced proteolysis with fragmentation of motor nerves and microvessels. Morton AB, Norton CE, Jacobsen NL, Fernando CA, Cornelison DDW, Segal SS. Skeletal Muscle; 9(1):27.
Date published:
November 6, 2019
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D Cornelison.
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Dynamics of trophoblast differentiation in peri-implantation–stage human embryos. West RC, Ming H, Logsdon DM, Sun J, Rajput SK, Kile RA, Schoolcraft WB, Michael Roberts R, Krisher RL, Jiang Z, Yuan Y. Proceedings of the National Academy of Sciences of the United States of America; 116(45):22635-22644.
Date published:
November 5, 2019
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Genome Editing in Plants: Exploration of Technological Advancements and Challenges. Vats S, Kumawat S, Kumar V, Patil GB, Joshi T, Sonah H, Sharma TR, Deshmukh R. Cells; 8(11).
Date published:
November 4, 2019
Featured in this article:
Trupti Joshi.
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DORN1/P2K1 and purino-calcium signalling in plants: Making waves with extracellular ATP. Matthus E, Sun J, Wang L, Bhat MG, Mohammad-Sidik AB, Wilkins KA, Leblanc-Fournier N, Legué V, Moulia B, Stacey G, Davies JM. Annals of Botany; 124(7):1227-1242.
Date published:
November 1, 2019
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Gary Stacey.
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Individual-Level Antibody Dynamics Reveal Potential Drivers of Influenza A Seasonality in Wild Pig Populations. Pepin KM, Pedersen K, Wan X-F, Cunningham FL, Webb CT, Wilber MQ. Integrative and Comparative Biology; 59(5):1231-1242.
Date published:
November 1, 2019
Featured in this article:
XiuFeng “Henry” Wan.
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Protein Ubiquitylation and Sumoylation Site Prediction Based on Ensemble and Transfer Learning. He F, Wang R, Gao Y, Wang D, Yu Y, Xu D, Zhao X. Proceedings - 2019 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2019; 117-123.
Date published:
November 1, 2019
Featured in this article:
Dong Xu.
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Broad-spectrum resistance to bacterial blight in rice using genome editing. Oliva R, Ji C, Atienza-Grande G, Huguet-Tapia JC, Perez-Quintero A, Li T, Eom J-S, Li C, Nguyen H, Liu B, Auguy F, Sciallano C, Luu VT, Dossa GS, Cunnac S, Schmidt SM, Slamet-Loedin IH, Vera Cruz C, Szurek B, Frommer WB, White FF, Yang B. Nature Biotechnology; 37(11):1344-1350.
Date published:
November 1, 2019
Featured in this article:
Bing Yang.
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Diagnostic kit for rice blight resistance. Eom J-S, Luo D, Atienza-Grande G, Yang J, Ji C, Thi Luu V, Huguet-Tapia JC, Char SN, Liu B, Nguyen H, Schmidt SM, Szurek B, Vera Cruz C, White FF, Oliva R, Yang B, Frommer WB. Nature Biotechnology; 37(11):1372-1379.
Date published:
November 1, 2019
Featured in this article:
Bing Yang.
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One thousand plant transcriptomes and the phylogenomics of green plants. Leebens-Mack JH, Barker MS, Carpenter EJ, Deyholos MK, Gitzendanner MA, Graham SW, Grosse I, Li Z, Melkonian M, Mirarab S, Porsch M, Quint M, Rensing SA, Soltis DE, Soltis PS, Stevenson DW, Ullrich KK, Wickett NJ, DeGironimo L, Edger PP, Jordon-Thaden IE, Joya S, Liu T, Melkonian B, Miles NW, Pokorny L, Quigley C, Thomas P, Villarreal JC, Augustin MM, Barrett MD, Baucom RS, Beerling DJ, Benstein RM, Biffin E, Brockington SF, Burge DO, Burris JN, Burris KP, Burtet-Sarramegna V, Caicedo AL, Cannon SB, Çebi Z, Chang Y, Chater C, Cheeseman JM, Chen T, Clarke ND, Clayton H, Covshoff S, Crandall-Stotler BJ, Cross H, dePamphilis CW, Der JP, Determann R, Dickson RC, Di Stilio VS, Ellis S, Fast E, Feja N, Field KJ, Filatov DA, Finnegan PM, Floyd SK, Fogliani B, García N, Gâteblé G, Godden GT, Goh FQY, Greiner S, Harkess A, Heaney JM, Helliwell KE, Heyduk K, Hibberd JM, Hodel RGJ, Hollingsworth PM, Johnson MTJ, Jost R, Joyce B, Kapralov MV, Kazamia E, Kellogg EA, Koch MA, Von Konrat M, Könyves K, Kutchan TM, Lam V, Larsson A, Leitch AR, Lentz R, Li F-W, Lowe AJ, Ludwig M, Manos PS, Mavrodiev E, McCormick MK, McKain M, McLellan T, McNeal JR, Miller RE, Nelson MN, Peng Y, Ralph P, Real D, Riggins CW, Ruhsam M, Sage RF, Sakai AK, Scascitella M, Schilling EE, Schlösser E-M, Sederoff H, Servick S, Sessa EB, Shaw AJ, Shaw SW, Sigel EM, Skema C, Smith AG, Smithson A, Stewart CN Jr, Stinchcombe JR, Szövényi P, Tate JA, Tiebel H, Trapnell D, Villegente M, Wang C-N, Weller SG, Wenzel M, Weststrand S, Westwood JH, Whigham DF, Wu S, Wulff AS, Yang Y, Zhu D, Zhuang C, Zuidof J, Chase MW, Pires JC, Rothfels CJ, Yu J, Chen C, Chen L, Cheng S, Li J, Li R, Li X, Lu H, Ou Y, Sun X, Tan X, Tang J, Tian Z, Wang F, Wang J, Wei X, Xu X, Yan Z, Yang F, Zhong X, Zhou F, Zhu Y, Zhang Y, Ayyampalayam S, Barkman TJ, Nguyen N-P, Matasci N, Nelson DR, Sayyari E, Wafula EK, Walls RL, Warnow T, An H, Arrigo N, Baniaga AE, Galuska S, Jorgensen SA, Kidder TI, Kong H, Lu-Irving P, Marx HE, Qi X, Reardon CR, Sutherland BL, Tiley GP, Welles SR, Yu R, Zhan S, Gramzow L, Theißen G, Wong GK-S, One Thousand Plant Transcriptomes Initiative. Nature; 574(7780):679-685.
Date published:
October 31, 2019
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Modeling of contextual information in knowledge graphs of diagnostic reports. Giannaris P, Tang C, Kholod O, Hanson S, Shyu C-R, Hammer R, Xu D, Shin D. CEUR Workshop Proceedings; 2515:20-29.
Date published:
October 26, 2019
Featured in this article:
Dong Xu.
Jasmonic acid is required for plant acclimation to a combination of high light and heat stress. Balfagón D, Sengupta S, Gómez-Cadenas A, Fritschi FB, Azad RK, Mittler R, Zandalinasc SI. Plant Physiology; 181(4):1668-1682.
Date published:
October 8, 2019
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Ron Mittler.
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Multi-cloud performance and security-driven brokering for bioinformatics workflows. Nguyen M, Debroy S, Calyam P, Lyu Z, Joshi T. Proceedings - International Conference on Network Protocols, ICNP; 2019-October:8888071.
Date published:
October 7, 2019
Featured in this article:
Zhen Lyu,
Trupti Joshi.
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AAV9-mediated delivery of miR-23a reduces disease severity in Smn2B/-SMA model mice. Kaifer KA, Villalón E, O'Brien BS, Sison SL, Smith CE, Simon ME, Marquez J, O'Day S, Hopkins AE, Neff R, Rindt H, Ebert AD, Lorson CL. Human Molecular Genetics; 28(19):3199-3210.
Date published:
October 1, 2019
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Christian Lorson.
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Redox-dependent gating of VDAC by mitoNEET. Lipper CH, Stofleth JT, Bai F, Sohn Y-S, Roy S, Mittler R, Nechushtai R, Onuchic JN, Jennings PA. Proceedings of the National Academy of Sciences of the United States of America; 116(40):19924-19929.
Date published:
October 1, 2019
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Ron Mittler.
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12-Hydroxy-Jasmonoyl-l-Isoleucine Is an Active Jasmonate That Signals through CORONATINE INSENSITIVE 1 and Contributes to the Wound Response in Arabidopsis. Poudel AN, Holtsclaw RE, Kimberlin A, Sen S, Zeng S, Joshi T, Lei Z, Sumner LW, Singh K, Matsuura H, Koo AJ. Plant and Cell Physiology; 60(10):2152-2166.
Date published:
October 1, 2019
Featured in this article:
Trupti Joshi,
Lloyd Sumner,
Kamlendra Singh.
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Correction: Evidence for plant-derived xenomiRs based on a large-scale analysis of public small RNA sequencing data from human samples (PLoS ONE (2019) 13:6 (e0187519) DOI: 10.1371/journal.pone.0187519). Zhao Q, Liu Y, Zhang N, Hu M, Zhang H, Joshi T, Xu D. PLoS ONE; 14(10):e0224537.
Date published:
October 1, 2019
Featured in this article:
Trupti Joshi,
Dong Xu.
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Serologic evidence for influenza a virus exposure in three loon species breeding in Alaska, USA. Uher-Koch BD, Spivey TJ, Van Hemert CR, Schmutz JA, Jiang K, Wan X-F, Ramey AM. Journal of Wildlife Diseases; 55(4):862-867.
Date published:
October 1, 2019
Featured in this article:
XiuFeng “Henry” Wan.
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A missense mutation in SLC6A1 associated with Lennox-Gastaut syndrome impairs GABA transporter 1 protein trafficking and function. Cai K, Wang J, Eissman J, Wang J, Nwosu G, Shen W, Liang H-C, Li X-J, Zhu H-X, Yi Y-H, Song J, Xu D, Delpire E, Liao W-P, Shi Y-W, Kang J-Q. Experimental Neurology; 320:112973.
Date published:
October 1, 2019
Featured in this article:
Dong Xu.
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An efficient method to clone TAL effector genes from Xanthomonas oryzae using Gibson assembly. Li C, Ji C, Huguet-Tapia JC, White FF, Dong H, Yang B. Molecular Plant Pathology; 20(10):1453-1462.
Date published:
October 1, 2019
Featured in this article:
Bing Yang.
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Multiple genes recruited from hormone pathways partition maize diterpenoid defences. Ding Y, Murphy KM, Poretsky E, Mafu S, Yang B, Char SN, Christensen SA, Saldivar E, Wu M, Wang Q, Ji L, Schmitz RJ, Kremling KA, Buckler ES, Shen Z, Briggs SP, Bohlmann J, Sher A, Castro-Falcon G, Hughes CC, Huffaker A, Zerbe P, Schmelz EA. Nature Plants; 5(10):1043-1056.
Date published:
October 1, 2019
Featured in this article:
Bing Yang.
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Extracting molecular entities and their interactions from pathway figures based on deep learning. He F, Wang D, Innokenteva Y, Kholod O, Shin D, Xu D. ACM-BCB 2019 - Proceedings of the 10th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics; 397-404.
Date published:
September 7, 2019
Featured in this article:
Dong Xu.
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Machine Learning Classifiers for Endometriosis Using Transcriptomics and Methylomics Data. Akter S, Xu D, Nagel SC, Bromfield JJ, Pelch K, Wilshire GB, Joshi T. Frontiers in Genetics; 10:766.
Date published:
September 4, 2019
Featured in this article:
Dong Xu,
Trupti Joshi.
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Early Extracellular ATP Signaling in Arabidopsis Root Epidermis: A Multi-Conductance Process. Wang L, Stacey G, Leblanc-Fournier N, Legué V, Moulia B, Davies JM. Frontiers in Plant Science; 10:1064.
Date published:
September 4, 2019
Featured in this article:
Gary Stacey.
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Whole-Plant Live Imaging of Reactive Oxygen Species. Fichman Y, Miller G, Mittler R. Molecular Plant; 12(9):1203-1210.
Date published:
September 2, 2019
Featured in this article:
Ron Mittler.
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Comparative genomic analysis of six Glossina genomes, vectors of African trypanosomes. Attardo GM, Abd-Alla AMM, Acosta-Serrano A, Allen JE, Bateta R, Benoit JB, Bourtzis K, Caers J, Caljon G, Christensen MB, Farrow DW, Friedrich M, Hua-Van A, Jennings EC, Larkin DM, Lawson D, Lehane MJ, Lenis VP, Lowy-Gallego E, Macharia RW, Malacrida AR, Marco HG, Masiga D, Maslen GL, Matetovici I, Meisel RP, Meki I, Michalkova V, Miller WJ, Minx P, Mireji PO, Ometto L, Parker AG, Rio R, Rose C, Rosendale AJ, Rota-Stabelli O, Savini G, Schoofs L, Scolari F, Schoofs L, Scolari F, Swain MT, Takáč P, Tomlinson C, Tsiamis G, Van Den Abbeele J, Vigneron A, Wang J, Warren WC, Waterhouse RM, Weirauch MT, Weiss BL, Wilson RK, Zhao X, Aksoy S. Genome Biology; 20(1):187.
Date published:
September 2, 2019
Featured in this article:
Wes Warren.
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Nrf2-inducing and HMG-CoA reductase inhibitory activities of a polyphenol-rich fraction of Guazuma ulmifolia leaves. Sulistiyani S, Falah S, Wahyuni W, Andrianto D, Lelono A, Nurcholis W, Mossine V, Hannink M. Asian Pacific Journal of Tropical Biomedicine; 9(9):389-396.
Date published:
September 1, 2019
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SoyCSN: Soybean context-specific network analysis and prediction based on tissue-specific transcriptome data. Wang J, Hossain MS, Lyu Z, Schmutz J, Stacey G, Xu D, Joshi T. Plant Direct; 3(9):e00167.
Date published:
September 1, 2019
Featured in this article:
Gary Stacey,
Dong Xu,
Trupti Joshi.
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Ectopic defense gene expression is associated with growth defects in medicago truncatula lignin pathway mutants. Ha CM, Fine D, Bhatia A, Rao X, Martin MZ, Engle NL, Wherritt DJ, Tschaplinski TJ, Sumner LW, Dixon RA. Plant Physiology; 181(1):63-84.
Date published:
September 1, 2019
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Lloyd Sumner.
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Purinergic signaling in Alzheimer’s disease. Erb L, Woods LT, Khalafalla MG, Weisman GA. Brain Research Bulletin; 151:25-37.
Date published:
September 1, 2019
Featured in this article:
Gary Weisman.
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A Fast Projection-Based Algorithm for Clustering Big Data. Wu Y, He Z, Lin H, Zheng Y, Zhang J, Xu D. Interdisciplinary Sciences: Computational Life Sciences; 11(3):360-366.
Date published:
September 1, 2019
Featured in this article:
Dong Xu.
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Keep talking: Crosstalk between iron and sulfur networks fine-tunes growth and development to promote survival under iron limitation. Mendoza-Cózatl DG, Gokul A, Carelse MF, Jobe TO, Long TA, Keyster M. Journal of Experimental Botany; 70(16):4197-4210.
Date published:
August 19, 2019
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David Mendoza-Cózatl.
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A seed germination transcriptomic study contrasting two soybean genotypes that differ in terms of their tolerance to the deleterious impacts of elevated temperatures during seed fill. Gillman JD, Biever JJ, Ye S, Spollen WG, Givan SA, Lyu Z, Joshi T, Smith JR, Fritschi FB. BMC Research Notes; 12(1):522.
Date published:
August 19, 2019
Featured in this article:
Bill Spollen,
Scott Givan,
Zhen Lyu,
Trupti Joshi.
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A rectified factor network based biclustering method for detecting cancer-related coding genes and miRNAs, and their interactions. Su L, Liu G, Wang J, Xu D. Methods; 166:22-30.
Date published:
August 15, 2019
Featured in this article:
Dong Xu.
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Muscle fiber-type selective propensity to pathology in the nmd mouse model of SMARD1. Villalón E, Lee NN, Marquez J, Lorson CL. Biochemical and Biophysical Research Communications; 516(1):313-319.
Date published:
August 13, 2019
Featured in this article:
Christian Lorson.
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Affordable remote monitoring of plant growth in facilities using Raspberry Pi computers. Grindstaff B, Mabry ME, Blischak PD, Quinn M, Chris Pires J. Applications in Plant Sciences; 7(8):e11280.
Date published:
August 12, 2019
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Biotechnological potential of LSD1, EDS1, and PAD4 in the improvement of crops and industrial plants. Bernacki MJ, Czarnocka W, Szechyńska-Hebda M, Mittler R, Karpiński S. Plants; 8(8):290.
Date published:
August 1, 2019
Featured in this article:
Ron Mittler.
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Silencing AXL by covalent siRNA-gelatin-antibody nanoconjugate inactivates mTOR/EMT pathway and stimulates p53 for TKI sensitization in NSCLC. Suresh D, Zambre A, Mukherjee S, Ghoshdastidar S, Jiang Y, Joshi T, Upendran A, Kannan R. Nanomedicine: Nanotechnology, Biology, and Medicine; 20:102007.
Date published:
August 1, 2019
Featured in this article:
Trupti Joshi.
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Early genistein exposure of California mice and effects on the gut microbiota-brain axis. Marshall BL, Liu Y, Farrington MJ, Mao J, Helferich WG, Schenk AK, Bivens NJ, Sarma SJ, Lei Z, Sumner LW, Joshi T, Rosenfeld CS. Journal of Endocrinology; 242(2):139-157.
Date published:
August 1, 2019
Featured in this article:
Lloyd Sumner,
Trupti Joshi.
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Development of an Agrobacterium-delivered CRISPR/Cas9 system for wheat genome editing. Zhang Z, Hua L, Gupta A, Tricoli D, Edwards KJ, Yang B, Li W. Plant Biotechnology Journal; 17(8):1623-1635.
Date published:
August 1, 2019
Featured in this article:
Bing Yang.
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Virion-associated, host-derived DHX9/RNA helicase A enhances the processivity of HIV-1 reverse transcriptase on genomic RNA. Brady S, Singh G, Bolinger C, Song Z, Boeras I, Weng K, Trent B, Brown WC, Singh K, Boris-Lawrie K, Heng X. Journal of Biological Chemistry; 294(30):11473-11485.
Date published:
July 26, 2019
Featured in this article:
Kamlendra Singh.
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Increasing protected data accessibility for age-related cataract research using a semi-automated honest broker. Valluripally S, Raju M, Calyam P, Lemus M, Purohit S, Mosa A, Joshi T. Modeling and Artificial Intelligence in Ophthalmology; 2(3):115-132.
Date published:
July 25, 2019
Featured in this article:
Trupti Joshi.
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Demonstration of highly efficient dual gRNA CRISPR/Cas9 editing of the homeologous GmFAD2-1A and GmFAD2-1B genes to yield a high oleic, low linoleic and α-linolenic acid phenotype in soybean. Do PT, Nguyen CX, Bui HT, Tran LTN, Stacey G, Gillman JD, Zhang ZJ, Stacey MG. BMC Plant Biology; 19(1):311.
Date published:
July 15, 2019
Featured in this article:
Gary Stacey,
Minviluz (Bing) Stacey.
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Capsule network for protein post-translational modification site prediction. Wang D, Liang Y, Xu D. Bioinformatics; 35(14):2386-2394.
Date published:
July 15, 2019
Featured in this article:
Dong Xu.
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The Piranha Genome Provides Molecular Insight Associated to Its Unique Feeding Behavior. Schartl M, Kneitz S, Volkoff H, Adolfi M, Schmidt C, Fischer P, Minx P, Tomlinson C, Meyer A, Warren WC. Genome Biology and Evolution; 11(8):2099-2106.
Date published:
July 8, 2019
Featured in this article:
Wes Warren.
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Aspirin Triggered Resolvin D1 reduces inflammation and restores saliva secretion in a Sjögren’s syndrome mouse model. Dean S, Wang C-S, Nam K, Maruyama CL, Trump BG, Baker OJ. Rheumatology (United Kingdom); 58(7):1285-1292.
Date published:
July 1, 2019
Featured in this article:
Olga Baker.
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Effects of moloney leukemia virus 10 protein on hepatitis B virus infection and viral replication. Puray-Chavez MN, Farghali MH, Yapo V, Huber AD, Liu D, Ndongwe TP, Casey MC, Laughlin T, Hannink M, Tedbury PR, Sarafianos SG. Viruses; 11(7):651.
Date published:
July 1, 2019
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Exploring the molecular genetic foundations of cancer biology and how biomedical advances are made in an advanced undergraduate course. Alexander S, Hannink M. Biochemistry and Molecular Biology Education; 47(4):408-416.
Date published:
July 1, 2019
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A guinea fowl genome assembly provides new evidence on evolution following domestication and selection in galliformes. Vignal A, Boitard S, Thébault N, Dayo G-K, Yapi-Gnaore V, Youssao Abdou Karim I, Berthouly-Salazar C, Pálinkás-Bodzsár N, Guémené D, Thibaud-Nissen F, Warren WC, Tixier-Boichard M, Rognon X. Molecular Ecology Resources; 19(4):997-1014.
Date published:
July 1, 2019
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Wes Warren.
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Expression signatures of cisplatin- And trametinib-treated early-stage medaka melanomas. Klotz B, Kneitz S, Lu Y, Boswell W, Postlethwait J, Warren W, Walter RB, Schartl M. G3: Genes, Genomes, Genetics; 9(7):2267-2276.
Date published:
July 1, 2019
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Wes Warren.
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Dramatic changes in gene expression in different forms of Crithidia fasciculata reveal potential mechanisms for insect-specific adhesion in kinetoplastid parasites. Filosa JN, Berry CT, Ruthel G, Beverley SM, Warren WC, Tomlinson C, Myler PJ, Dudkin EA, Povelones ML, Povelones M. PLoS Neglected Tropical Diseases; 13(7):e0007570.
Date published:
July 1, 2019
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Wes Warren.
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Transcriptome sequencing of active buds from Populus deltoides CL. and Populus × zhaiguanheibaiyang reveals phytohormones involved in branching. Wang J, Tian Y, Li J, Yang K, Xing S, Han X, Xu D, Wang Y. Genomics; 111(4):700-709.
Date published:
July 1, 2019
Featured in this article:
Dong Xu.
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PSICA: a fast and accurate web service for protein model quality analysis. Wang W, Li Z, Wang J, Xu D, Shang Y. Nucleic Acids Research; 47(W1):W443-W450.
Date published:
July 1, 2019
Featured in this article:
Dong Xu.
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GS-CA compounds: First-in-class HIV-1 capsid inhibitors covering multiple grounds. Singh K, Gallazzi F, Hill KJ, Burke DH, Lange MJ, Quinn TP, Neogi U, Sönnerborg A. Frontiers in Microbiology; 10(JUN):1227.
Date published:
June 20, 2019
Featured in this article:
Kamlendra Singh,
Donald Burke-Agüero.
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Synergistic effects of laminin-1 peptides, VEGF and FGF9 on salivary gland regeneration. Nam K, Dean SM, Brown CT, Smith RJ Jr, Lei P, Andreadis ST, Baker OJ. Acta Biomaterialia; 91:186-194.
Date published:
June 1, 2019
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Olga Baker.
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Long-acting Anti-HIV drugs targeting HIV-1 reverse transcriptase and integrase. Singh K, Sarafianos SG, Sönnerborg A. Pharmaceuticals; 12(2):62.
Date published:
June 1, 2019
Featured in this article:
Kamlendra Singh.
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Integrated metabolomics identifies CYP72A67 and CYP72A68 oxidases in the biosynthesis of Medicago truncatula oleanate sapogenins. Tzin V, Snyder JH, Yang DS, Huhman DV, Watson BS, Allen SN, Tang Y, Miettinen K, Arendt P, Pollier J, Goossens A, Sumner LW. Metabolomics; 15(6):85.
Date published:
June 1, 2019
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Lloyd Sumner.
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Influenza Neuraminidase: Underrated Role in Receptor Binding. Wen F, Wan X-F. Trends in Microbiology; 27(6):447-479.
Date published:
June 1, 2019
Featured in this article:
XiuFeng “Henry” Wan.
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Large-scale profiling of saponins in different ecotypes of Medicago truncatula. Lei Z, Watson BS, Huhman D, Yang DS, Sumner LW. Frontiers in Plant Science; 10:850.
Date published:
May 31, 2019
Featured in this article:
Lloyd Sumner.
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HDAC5 catalytic activity suppresses cardiomyocyte oxidative stress and NRF2 target gene expression. Hu T, Schreiter FC, Bagchi RA, Tatman PD, Hannink M, McKinsey TA. Journal of Biological Chemistry; 294(21):8640-8652.
Date published:
May 24, 2019
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Sequence determinants in gammaretroviral Env cytoplasmic tails dictate virus-specific pseudotyping compatibility. Song YE, Olinger GY, Janaka SK, Johnson MC. Journal of Virology; 93(11):e0217218.
Date published:
May 15, 2019
Featured in this article:
Marc Johnson.
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Novel Hepatitis B Virus Capsid-Targeting Antiviral That Aggregates Core Particles and Inhibits Nuclear Entry of Viral Cores. Huber AD, Pineda DL, Liu D, Boschert KN, Gres AT, Wolf JJ, Coonrod MN, Tang J, Laughlin TG, Yang Q, Puray-Chavez MN, Ji J, Singh K, Kirby KA, Wang Z, Sarafianos SG. ACS Infectious Diseases; 5(5):750-758.
Date published:
May 10, 2019
Featured in this article:
Kamlendra Singh.
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A method for investigating the pseudomonas syringae-arabidopsis thaliana pathosystem under various light environments. Leuchtman DL, Shumate AD, Gassmann W, Liscum E. Methods in Molecular Biology; 1991:107-113.
Date published:
May 1, 2019
Featured in this article:
Walter Gassmann.
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Generating transgenic arabidopsis plants for functional analysis of pathogen effectors and corresponding R proteins. Pike S, Gassmann W, Su J. Methods in Molecular Biology; 1991:199-206.
Date published:
May 1, 2019
Featured in this article:
Walter Gassmann.
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Direct regulation of the EFR-dependent immune response by arabidopsis TCP transcription factors. Spears BJ, Howton TC, Gao F, Garner CM, Shahid Mukhtar M, Gassmann W. Molecular Plant-Microbe Interactions; 32(5):540-549.
Date published:
May 1, 2019
Featured in this article:
Walter Gassmann.
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Author Correction: A lipid-based partitioning mechanism for selective incorporation of proteins into membranes of HIV particles (Nature Cell Biology, (2019), 21, 4, (452-461), 10.1038/s41556-019-0300-Y). Sengupta P, Seo AY, Pasolli HA, Song YE, Johnson MC, Lippincott-Schwartz J. Nature Cell Biology; 21(5):662.
Date published:
May 1, 2019
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Marc Johnson.
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HIV-1 subtype C with PYxE insertion has enhanced binding of Gag-p6 to host cell protein ALIX and increased replication fitness. van Domselaar R, Njenda DT, Rao R, Sönnerborg A, Singh K, Neogi U. Journal of Virology; 93(9):e00077-19.
Date published:
May 1, 2019
Featured in this article:
Kamlendra Singh.
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P2X7 receptor deletion suppresses γ-radiation-induced hyposalivation. Gilman KE, Camden JM, Klein RR, Zhang Q, Weisman GA, Limesand KH. American Journal of Physiology - Regulatory Integrative and Comparative Physiology; 316(5):R687-R696.
Date published:
May 1, 2019
Featured in this article:
Gary Weisman.
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Prediction of Protein Backbone Torsion Angles Using Deep Residual Inception Neural Networks. Fang C, Shang Y, Xu D. IEEE/ACM Transactions on Computational Biology and Bioinformatics; 16(3):1020-1028.
Date published:
May 1, 2019
Featured in this article:
Dong Xu.
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The deep learning-based recommender system “pubmender” for choosing a biomedical publication venue: Development and validation study. Feng X, Zhang H, Ren Y, Shang P, Zhu Y, Liang Y, Guan R, Xu D. Journal of Medical Internet Research; 21(5):e12957.
Date published:
May 1, 2019
Featured in this article:
Dong Xu.
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Identification of new loci for salt tolerance in soybean by high-resolution genome-wide association mapping. Do TD, Vuong TD, Dunn D, Clubb M, Valliyodan B, Patil G, Chen P, Xu D, Nguyen HT, Shannon JG. BMC Genomics; 20(1):318.
Date published:
April 25, 2019
Featured in this article:
Dong Xu.
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Ambient Metabolic Profiling and Imaging of Biological Samples with Ultrahigh Molecular Resolution Using Laser Ablation Electrospray Ionization 21 Tesla FTICR Mass Spectrometry. Stopka SA, Samarah LZ, Shaw JB, Liyu AV, Veličković D, Agtuca BJ, Kukolj C, Koppenaal DW, Stacey G, Paša-Tolić L, Anderton CR, Vertes A. Analytical Chemistry; 91(8):5028-5035.
Date published:
April 16, 2019
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Gary Stacey.
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Characterization of the spatial and temporal expression of two soybean mirnas identifies SCL6 as a novel regulator of soybean nodulation. Hossain MS, Hoang NT, Yan Z, Tóth K, Meyers BC, Stacey G. Frontiers in Plant Science; 10:475.
Date published:
April 16, 2019
Featured in this article:
Gary Stacey.
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ATP7A delivers copper to the lysyl oxidase family of enzymes and promotes tumorigenesis and metastasis. Shanbhag V, Jasmer-McDonald K, Zhu S, Martin AL, Gudekar N, Khan A, Ladomersky E, Singh K, Weisman GA, Petris MJ. Proceedings of the National Academy of Sciences of the United States of America; 116(14):6836-6841.
Date published:
April 2, 2019
Featured in this article:
Kamlendra Singh,
Gary Weisman,
Michael Petris.
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A lipid-based partitioning mechanism for selective incorporation of proteins into membranes of HIV particles. Sengupta P, Seo AY, Pasolli HA, Song YE, Johnson MC, Lippincott-Schwartz J. Nature Cell Biology; 21(4):452-461.
Date published:
April 1, 2019
Featured in this article:
Marc Johnson.
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Identification and characterization of a core set of ROS wave-associated transcripts involved in the systemic acquired acclimation response of Arabidopsis to excess light. Zandalinas SI, Sengupta S, Burks D, Azad RK, Mittler R. Plant Journal; 98(1):126-141.
Date published:
April 1, 2019
Featured in this article:
Ron Mittler.
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Directions for research and training in plant omics: Big Questions and Big Data. Argueso CT, Assmann SM, Birnbaum KD, Chen S, Dinneny JR, Doherty CJ, Eveland AL, Friesner J, Greenlee VR, Law JA, Marshall-Colón A, Mason GA, O'Lexy R, Peck SC, Schmitz RJ, Song L, Stern D, Varagona MJ, Walley JW, Williams CM. Plant Direct; 3(4):e00133.
Date published:
April 1, 2019
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Scott Peck.
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CMCDG, a novel nucleoside analog with favorable safety features, exerts potent activity against wild-type and entecavir-resistant hepatitis B virus. Higashi-Kuwata N, Hayashi S, Das D, Kohgo S, Murakami S, Hattori S-I, Imoto S, Venzon DJ, Singh K, Sarafianos SG, Tanaka Y, Mitsuya H. Antimicrobial Agents and Chemotherapy; 63(4):e02143-18.
Date published:
April 1, 2019
Featured in this article:
Kamlendra Singh.
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The lipid biochemistry of eukaryotic algae. Li-Beisson Y, Thelen JJ, Fedosejevs E, Harwood JL. Progress in Lipid Research; 74:31-68.
Date published:
April 1, 2019
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Jay Thelen.
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Pathogenesis of co-infections of influenza D virus and Mannheimia haemolytica in cattle. Zhang X, Outlaw C, Olivier A, Woolums A, Epperson W, Wan X-F. Veterinary Microbiology; 231:246-253.
Date published:
April 1, 2019
Featured in this article:
XiuFeng “Henry” Wan.
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Survey of arctic alaskan wildlife for influenza a antibodies: Limited evidence for exposure of mammals. Van Hemert C, Spivey TJ, Uher-Koch BD, Atwood TC, Sinnett DR, Meixell BW, Hupp JW, Jiang K, Adams LG, Gustine DD, Ramey AM, Wan X-F. Journal of Wildlife Diseases; 55(2):387-398.
Date published:
April 1, 2019
Featured in this article:
XiuFeng “Henry” Wan.
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Evolution of gene regulation in ruminants differs between evolutionary breakpoint regions and homologous synteny blocks. Farré M, Kim J, Proskuryakova AA, Zhang Y, Kulemzina AI, Li Q, Zhou Y, Xiong Y, Johnson JL, Perelman PL, Johnson WE, Warren WC, Kukekova AV, Zhang G, O'Brien SJ, Ryder OA, Graphodatsky AS, Ma J, Lewin HA, Larkin DM. Genome Research; 29(4):576-589.
Date published:
April 1, 2019
Featured in this article:
Wes Warren.
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Use of a fluorescent analog of glucose (2-NBDG) To identify uncultured rumen bacteria that take up glucose. Tao J, McCourt C, Sultana H, Nelson C, Driver J, Hackmanna TJ. Applied and Environmental Microbiology; 85(7):e03018-18.
Date published:
April 1, 2019
Featured in this article:
John Driver.
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Science at Sundance. Krauss RS, Shapiro MD, Koch PL, Kardon G, Cornelison DDW. Science; 363(6433):1270.
Date published:
March 22, 2019
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D Cornelison.
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Relationship Between Carbon Mobilization and Root Growth Measured by Carbon-11 Tracer in Arabidopsis Starch Mutants. Song L, Agtuca B, Schueller MJ, Jurisson SS, Stacey G, Ferrieri RA. Journal of Plant Growth Regulation; 38(1):164-179.
Date published:
March 15, 2019
Featured in this article:
Gary Stacey.
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Terpenoid esters are the major constituents from leaf lipid droplets of Camellia sinensis. Zhou X, Chen X, Du Z, Zhang Y, Zhang W, Kong X, Thelen JJ, Chen C, Chen M. Frontiers in Plant Science; 10:179.
Date published:
March 7, 2019
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Jay Thelen.
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The barren stalk2 Gene Is Required for Axillary Meristem Development in Maize. Yao H, Skirpan A, Wardell B, Matthes MS, Best NB, McCubbin T, Durbak A, Smith T, Malcomber S, McSteen P. Molecular Plant; 12(3):374-389.
Date published:
March 4, 2019
Featured in this article:
Paula McSteen.
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Auxin EvoDevo: Conservation and Diversification of Genes Regulating Auxin Biosynthesis, Transport, and Signaling. Matthes MS, Best NB, Robil JM, Malcomber S, Gallavotti A, McSteen P. Molecular Plant; 12(3):298-320.
Date published:
March 4, 2019
Featured in this article:
Paula McSteen.
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Comparing human and mouse salivary glands: A practice guide for salivary researchers. Maruyama CL, Monroe MM, Hunt JP, Buchmann L, Baker OJ. Oral Diseases; 25(2):403-415.
Date published:
March 1, 2019
Featured in this article:
Olga Baker.
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Strain-specific effect on biphasic DNA binding by HIV-1 integrase. Hill KJ, Rogers LC, Njenda DT, Burke DH, Sarafianos SG, Sonnerborg A, Neogi U, Singh K. AIDS; 33(3):588-592.
Date published:
March 1, 2019
Featured in this article:
Donald Burke-Agüero,
Kamlendra Singh.
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Recovery of blood flow regulation in microvascular resistance networks during regeneration of mouse gluteus maximus muscle. Fernando CA, Pangan AM, Cornelison DDW, Segal SS. Journal of Physiology; 597(5):1401-1417.
Date published:
March 1, 2019
Featured in this article:
D Cornelison.
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Using Xenopus laevis Oocytes to Functionally Characterize Plant Transporters. Pike S, Matthes MS, McSteen P, Gassmann W. Current protocols in plant biology; 4(1):e20087.
Date published:
March 1, 2019
Featured in this article:
Paula McSteen,
Walter Gassmann.
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Plant-derived phosphocholine facilitates cellular uptake of anti-pulmonary fibrotic HJT-sRNA-m7. Du J, Liang Z, Xu J, Zhao Y, Li X, Zhang Y, Zhao D, Chen R, Liu Y, Joshi T, Chang J, Wang Z, Zhang Y, Zhu J, Liu Q, Xu D, Jiang C. Science China Life Sciences; 62(3):309-320.
Date published:
March 1, 2019
Featured in this article:
Trupti Joshi,
Dong Xu.
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Importance of poly- 3-hydroxybutyrate metabolism to the ability of Herbaspirillum seropedicae to promote plant growth. Alves LPS, do Amaral FP, Kim D, Bom MT, Gavídia MP, Teixeira CS, Holthman F, Pedrosa FO, de Souza EM, Chubatsu LS, Müller-Santos M, Stacey G. Applied and Environmental Microbiology; 85(6):e02586-18.
Date published:
March 1, 2019
Featured in this article:
Gary Stacey.
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UHPLC-MS Analyses of Plant Flavonoids. Lei Z, Sumner BW, Bhatia A, Sarma SJ, Sumner LW. Current protocols in plant biology; 4(1):e20085.
Date published:
March 1, 2019
Featured in this article:
Lloyd Sumner.
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Antarctic blackfin icefish genome reveals adaptations to extreme environments. Kim B-M, Amores A, Kang S, Ahn D-H, Kim J-H, Kim I-C, Lee JH, Lee SG, Lee H, Lee J, Kim H-W, Desvignes T, Batzel P, Sydes J, Titus T, Wilson CA, Catchen JM, Warren WC, Schartl M, Detrich HW III, Postlethwait JH, Park H. Nature Ecology and Evolution; 3(3):469-478.
Date published:
March 1, 2019
Featured in this article:
Wes Warren.
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New deep learning methods for protein loop modeling. Nguyen SP, Li Z, Xu D, Shang Y. IEEE/ACM Transactions on Computational Biology and Bioinformatics; 16(2):596-606.
Date published:
March 1, 2019
Featured in this article:
Dong Xu.
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An extracellular histidine-containing motif in the zinc transporter ZIP4 plays a role in zinc sensing and zinc-induced endocytosis in mammalian cells. Chun H, Korolnek T, Lee C-J, Coyne HJ III, Winge DR, Kim B-E, Petris MJ. Journal of Biological Chemistry; 294(8):2815-2826.
Date published:
February 22, 2019
Featured in this article:
Michael Petris.
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Activation of Innate Immune Responses by a CpG Oligonucleotide Sequence Composed Entirely of Threose Nucleic Acid. Lange MJ, Burke DH, Chaput JC. Nucleic Acid Therapeutics; 29(1):51-59.
Date published:
February 1, 2019
Featured in this article:
Donald Burke-Agüero.
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NEET Proteins: A new link between iron metabolism, reactive oxygen species, and cancer. Mittler R, Darash-Yahana M, Sohn YS, Bai F, Song L, Cabantchik IZ, Jennings PA, Onuchic JN, Nechushtai R. Antioxidants and Redox Signaling; 30(8):1083-1095.
Date published:
February 1, 2019
Featured in this article:
Ron Mittler.
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Editorial. Rivero RM, Oliver MJ, Mittler R. Physiologia Plantarum; 165(2):125-127.
Date published:
February 1, 2019
Featured in this article:
Ron Mittler.
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Molecular tools for detecting Pdh1 can improve soybean breeding efficiency by reducing yield losses due to pod shatter. Miranda C, Culp C, Škrabišová M, Joshi T, Belzile F, Grant DM, Bilyeu K. Molecular Breeding; 39(2):27.
Date published:
February 1, 2019
Featured in this article:
Trupti Joshi.
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Usability of reference-free transcriptome assemblies for detection of differential expression: A case study on Aethionema arabicum dimorphic seeds. Wilhelmsson PKI, Chandler JO, Fernandez-Pozo N, Graeber K, Ullrich KK, Arshad W, Khan S, Hofberger JA, Buchta K, Edger PP, Pires JC, Schranz ME, Leubner-Metzger G, Rensing SA. BMC Genomics; 20(1):95.
Date published:
January 30, 2019
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Characterizing the Major Structural Variant Alleles of the Human Genome. Audano PA, Sulovari A, Graves-Lindsay TA, Cansilieris S, Sorensen M, Welch AE, Dougherty ML, Nelson BJ, Shah A, Dutcher SK, Warren WC, Magrini V, McGrath SD, Li YI, Wilson RK, Eichler EE. Cell; 176(3):663-675.e19.
Date published:
January 24, 2019
Featured in this article:
Wes Warren.
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Domain-specific Topic Model for Knowledge Discovery through Conversational Agents in Data Intensive Scientific Communities. Zhang Y, Calyam P, Joshi T, Nair S, Xu D. Proceedings - 2018 IEEE International Conference on Big Data, Big Data 2018; 4886-4895.
Date published:
January 22, 2019
Featured in this article:
Trupti Joshi,
Dong Xu.
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Knowledge Base Commons (KBCommons) v1.0: A multi OMICS’ web-based data integration framework for biological discoveries. Zeng S, Lyu Z, Narisetti SRK, Xu D, Joshi T. Proceedings - 2018 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018; 589-594.
Date published:
January 21, 2019
Featured in this article:
Dong Xu,
Trupti Joshi.
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Integrating Gene Expression Data and Pathway Knowledge for in Silico Hypothesis Generation with IMPRes. Jiang Y, Wang D, Xu D, Joshi T. Proceedings - 2018 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018; 102-107.
Date published:
January 21, 2019
Featured in this article:
Dong Xu,
Trupti Joshi.
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A Data Mining Approach for Biomarker Discovery Using Transcriptomics in Endometriosis. Akter S, Xu D, Nagel SC, Joshi T. Proceedings - 2018 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018; 969-972.
Date published:
January 21, 2019
Featured in this article:
Dong Xu,
Trupti Joshi.
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Bi-Allelic mutations of LONP1 encoding the mitochondrial LonP1 protease cause pyruvate dehydrogenase deficiency and profound neurodegeneration with progressive cerebellar atrophy. Nimmo GAM, Venkatesh S, Pandey AK, Marshall CR, Hazrati L-N, Blaser S, Ahmed S, Cameron J, Singh K, Ray PN, Suzuki CK, Yoon G. Human Molecular Genetics; 28(2):290-306.
Date published:
January 15, 2019
Featured in this article:
Kamlendra Singh.
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Community cloud architecture to improve use accessibility with security compliance in health big data applications. Valluripally S, Raju M, Calyam P, Chrisholm M, Sivarathri SS, Mosa A, Joshi T. ACM International Conference Proceeding Series; 377-380.
Date published:
January 4, 2019
Featured in this article:
Trupti Joshi.
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Copper uptake mechanism of Arabidopsis thaliana high-affinity COPT transporters. Sanz A, Pike S, Khan MA, Carrió-Seguí À, Mendoza-Cózatl DG, Peñarrubia L, Gassmann W. Protoplasma; 256(1):161-170.
Date published:
January 3, 2019
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David Mendoza-Cózatl,
Walter Gassmann.
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DeepDom: Predicting protein domain boundary from sequence alone using stacked bidirectional LSTM. Jiang Y, Wang D, Xu D. Pacific Symposium on Biocomputing; 24(2019):66-75.
Date published:
January 3, 2019
Featured in this article:
Dong Xu.
A male-expressed rice embryogenic trigger redirected for asexual propagation through seeds. Khanday I, Skinner D, Yang B, Mercier R, Sundaresan V. Nature; 565(7737):91-95.
Date published:
January 3, 2019
Featured in this article:
Bing Yang.
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Comparative phosphoproteomic analysis of Barley Embryos with different dormancy during imbibition. Ishikawa S, Barrero J, Takahashi F, Peck S, Gubler F, Shinozaki K, Umezawa T. International Journal of Molecular Sciences; 20(2):451.
Date published:
January 2, 2019
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Scott Peck.
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The renaissance of comparative biochemistry. Smith SD, Angelovici R, Heyduk K, Maeda HA, Moghe GD, Pires JC, Widhalm JR, Wisecaver JH. American Journal of Botany; 106(1):3-13.
Date published:
January 1, 2019
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Ruthie Angelovici,
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Zinc uptake in the Basidiomycota: Characterization of zinc transporters in Ustilago maydis. Martha-Paz AM, Eide D, Mendoza-Cózatl D, Castro-Guerrero NA, Aréchiga-Carvajal ET. Molecular Membrane Biology; 35(1):39-50.
Date published:
January 1, 2019
Featured in this article:
David Mendoza-Cózatl.
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The cisd gene family regulates physiological germline apoptosis through ced-13 and the canonical cell death pathway in Caenorhabditis elegans. King SD, Gray CF, Song L, Nechushtai R, Gumienny TL, Mittler R, Padilla PA. Cell Death and Differentiation; 26(1):162-178.
Date published:
January 1, 2019
Featured in this article:
Ron Mittler.
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Rapid Responses to Abiotic Stress: Priming the Landscape for the Signal Transduction Network. Kollist H, Zandalinas SI, Sengupta S, Nuhkat M, Kangasjärvi J, Mittler R. Trends in Plant Science; 24(1):25-37.
Date published:
January 1, 2019
Featured in this article:
Ron Mittler.
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Understanding genetic control of root system architecture in soybean: Insights into the genetic basis of lateral root number. Prince SJ, Valliyodan B, Ye H, Yang M, Tai S, Hu W, Murphy M, Durnell LA, Song L, Joshi T, Liu Y, Van de Velde J, Vandepoele K, Grover Shannon J, Nguyen HT. Plant Cell and Environment; 42(1):212-229.
Date published:
January 1, 2019
Featured in this article:
Trupti Joshi.
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Identification and quantification of phytosterols in black walnut kernels. Vu DC, Lei Z, Sumner LW, Coggeshall MV, Lin C-H. Journal of Food Composition and Analysis; 75:61-69.
Date published:
January 1, 2019
Featured in this article:
Lloyd Sumner.
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UHPLC-QTOF-MS/MS-SPE-NMR: A Solution to the Metabolomics Grand Challenge of Higher-Throughput, Confident Metabolite Identifications. Bhatia A, Sarma SJ, Lei Z, Sumner LW. Methods in Molecular Biology; 2037:113-133.
Date published:
January 1, 2019
Featured in this article:
Lloyd Sumner.
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Black Walnut (Juglans nigra) Extracts Inhibit Proinflammatory Cytokine Production from Lipopolysaccharide-Stimulated Human Promonocytic Cell Line U-937. Ho K-V, Schreiber KL, Vu DC, Rottinghaus SM, Jackson DE, Brown CR, Lei Z, Sumner LW, Coggeshall MV, Lin C-H. Frontiers in Pharmacology; 10(SEP):1059.
Date published:
January 1, 2019
Featured in this article:
Lloyd Sumner.
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Prediction of DNA-binding proteins by interaction fusion feature representation and selective ensemble. You W, Yang Z, Guo G, Wan X-F, Ji G. Knowledge-Based Systems; 163:598-610.
Date published:
January 1, 2019
Featured in this article:
XiuFeng “Henry” Wan.
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Graph-guided multi-task sparse learning model: A method for identifying antigenic variants of influenza A(H3N2) virus. Han L, Li L, Wen F, Zhong L, Zhang T, Wan X-F. Bioinformatics; 35(1):77-87.
Date published:
January 1, 2019
Featured in this article:
XiuFeng “Henry” Wan.
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Aerosol transmission of gull-origin Iceland subtype H10N7 influenza A virus in ferrets. Guan M, Hall JS, Zhang X, Dusek RJ, Olivier AK, Liu L, Li L, Krauss S, Danner A, Li T, Rutvisuttinunt W, Lin X, Hallgrimsson GT, Ragnarsdottir SB, Vignisson SR, TeSlaa J, Nashold SW, Jarman R, Wan X-F. Journal of Virology; 93(13):e00282-19.
Date published:
January 1, 2019
Featured in this article:
XiuFeng “Henry” Wan.
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Characterization of select wild soybean accessions in the USDA germplasm collection for seed composition and agronomic traits. La T, Large E, Taliercio E, Song Q, Gillman JD, Xu D, Nguyen HT, Shannon G, Scaboo A. Crop Science; 59(1):233-251.
Date published:
January 1, 2019
Featured in this article:
Dong Xu.
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Trends in Alzheimer’s disease research based upon machine learning analysis of pubmed abstracts. Guan R, Wen X, Liang Y, Xu D, He B, Feng X. International Journal of Biological Sciences; 15(10):2065-2074.
Date published:
January 1, 2019
Featured in this article:
Dong Xu.
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Identification and expression analysis of the GDSL esterase/lipase family genes, and the characterization of SaGLIP8 in Sedum alfredii Hance under cadmium Stress. Li H, Han X, Qiu W, Xu D, Wang Y, Yu M, Hu X, Zhuo R. PeerJ; 2019(4):e6741.
Date published:
January 1, 2019
Featured in this article:
Dong Xu.
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Computational prediction of ubiquitination proteins using evolutionary profiles and functional domain annotation. Qiu W, Xu C, Xiao X, Xu D. Current Genomics; 20(5):389-399.
Date published:
January 1, 2019
Featured in this article:
Dong Xu.
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Large expert-curated database for benchmarking document similarity detection in biomedical literature search. 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Database; 2019:1-67.
Date published:
January 1, 2019
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Dong Xu.
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CRISPR/Cas9 for mutagenesis in rice. Char SN, Li R, Yang B. Methods in Molecular Biology; 1864:279-293.
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January 1, 2019
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Bing Yang.
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An agrobacterium-mediated CRISPR/Cas9 platform for genome editing in maize. Lee K, Zhu H, Yang B, Wang K. Methods in Molecular Biology; 1917:121-143.
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January 1, 2019
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Bing Yang.
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Creating large chromosomal deletions in rice using CRISPR/Cas9. Li R, Char SN, Yang B. Methods in Molecular Biology; 1917:47-61.
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January 1, 2019
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Bing Yang.
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Next generation sequencing of the pig αβ TCR repertoire identifies the porcine invariant NKT cell receptor. Yang G, Artiaga BL, Lomelino CL, Jayaprakash AD, Sachidanandam R, McKenna R, Driver JP. Journal of Immunology; 202(7):1981-1991.
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January 1, 2019
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John Driver.
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Early onset preeclampsia in a model for human placental trophoblast. Sheridan MA, Yang Y, Jain A, Lyons AS, Yang P, Brahmasani SR, Dai A, Tian Y, Ellersieck MR, Tuteja G, Schust DJ, Schulz LC, Ezashi T, Michael Roberts R. Proceedings of the National Academy of Sciences of the United States of America; 116(10):4336-4345.
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January 1, 2019
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2018
MetExpert: An expert system to enhance gas chromatography‒mass spectrometry-based metabolite identifications. Qiu F, Lei Z, Sumner LW. Analytical Chimica Acta; 1037:316-326.
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December 11, 2018
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Lloyd Sumner.
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First genome-wide CNV mapping in FELIS CATUS using next generation sequencing data. Genova F, Longeri M, Lyons LA, Bagnato A, Gandolfi B, Aberdein D, Alves PC, Barsh GS, Beale HC, Bergström TF, Boyko AR, Brockman JA, Castelhano MG, Chan PP, Davis BW, Distl O, Dodman NH, Matthew Ellinwood N, Fogle JE, Forman OP, Garrick DJ, Häggström J, Helps CR, Hytönen MK, Ibrahim DM, Kaukonen M, Kaelin CB, Leclerc E, Lear TL, Leeb T, Lohi H, Lupiáñez DG, Magnuson MA, Malik R, Montague MJ, Munday JS, Murphy WJ, Ostrander EA, Pedersen NC, Petersen-Jones SM, Rothschild MF, Shapiro B, Stern JA, Swanson WF, Terio KA, Todhunter RJ, Ueda Y, Warren WC, Wilcox EA, Wildschutte JH, Ginns EI, Strillacci MG. BMC Genomics; 19(1):895.
Date published:
December 10, 2018
Featured in this article:
Wes Warren.
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Poly-Target Selection Identifies Broad-Spectrum RNA Aptamers. Alam KK, Chang JL, Lange MJ, Nguyen PDM, Sawyer AW, Burke DH. Molecular Therapy - Nucleic Acids; 13:605-619.
Date published:
December 7, 2018
Featured in this article:
Donald Burke-Agüero.
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Generation and evaluation of modified opaque-2 popcorn suggests a route to quality protein popcorn. Ren Y, Yobi A, Marshall L, Angelovici R, Rodriguez O, Holding DR. Frontiers in Plant Science; 871:1803.
Date published:
December 6, 2018
Featured in this article:
Ruthie Angelovici.
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A High-Throughput Absolute-Level Quantification of Protein-Bound Amino Acids in Seeds. Yobi A, Angelovici R. Current protocols in plant biology; 3(4):e20084.
Date published:
December 1, 2018
Featured in this article:
Ruthie Angelovici.
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Erratum to: AT-RvD1 Promotes Resolution of Inflammation in NOD/ShiLtJ mice (Scientific Reports, (2017), 7, 1, (45525), 10.1038/srep45525). Wang C-S, Maruyama CL, Easley JT, Trump BG, Baker OJ. Scientific Reports; 8(1):15220.
Date published:
December 1, 2018
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Olga Baker.
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Modular cell-internalizing aptamer nanostructure enables targeted delivery of large functional RNAs in cancer cell lines. Porciani D, Cardwell LN, Tawiah KD, Alam KK, Lange MJ, Daniels MA, Burke DH. Nature Communications; 9(1):2283.
Date published:
December 1, 2018
Featured in this article:
Donald Burke-Agüero.
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Phylogenetic analysis of the CDGSH iron-sulfur binding domain reveals its ancient origin. Sengupta S, Nechushtai R, Jennings PA, Onuchic JN, Padilla PA, Azad RK, Mittler R. Scientific Reports; 8(1):4840.
Date published:
December 1, 2018
Featured in this article:
Ron Mittler.
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Local and systemic metabolic responses during light-induced rapid systemic signaling. Choudhury FK, Devireddy AR, Azad RK, Shulaev V, Mittler R. Plant Physiology; 178(4):1461-1472.
Date published:
December 1, 2018
Featured in this article:
Ron Mittler.
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The DNA binding landscape of the maize AUXIN RESPONSE FACTOR family. Galli M, Khakhar A, Lu Z, Chen Z, Sen S, Joshi T, Nemhauser JL, Schmitz RJ, Gallavotti A. Nature Communications; 9(1):4526.
Date published:
December 1, 2018
Featured in this article:
Trupti Joshi.
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Analyses of HIV-1 integrase sequences prior to South African national HIV-Treatment program and available of integrase inhibitors in Cape Town, South Africa. Brado D, Obasa AE, Ikomey GM, Cloete R, Singh K, Engelbrecht S, Neogi U, Jacobs GB. Scientific Reports; 8(1):4709.
Date published:
December 1, 2018
Featured in this article:
Kamlendra Singh.
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Metabolomics of two pecan varieties provides insights into scab resistance. Lei Z, Kranawetter C, Sumner BW, Huhman D, Wherritt DJ, Thomas AL, Rohla C, Sumner LW. Metabolites; 8(4):56.
Date published:
December 1, 2018
Featured in this article:
Lloyd Sumner.
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Identifying antibacterial compounds in black walnuts (Juglans nigra) using a metabolomics approach. Ho K-V, Lei Z, Sumner LW, Coggeshall MV, Hsieh H-Y, Stewart GC, Lin C-H. Metabolites; 8(4):58.
Date published:
December 1, 2018
Featured in this article:
Lloyd Sumner.
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Soy-Induced Fecal Metabolome Changes in Ovariectomized and Intact Female Rats: Relationship with Cardiometabolic Health. Veira-Potter VJ, Cross T-WL, Swanson KS, Sarma SJ, Lei Z, Sumner LW, Rosenfeld CS. Scientific Reports; 8(1):16896.
Date published:
December 1, 2018
Featured in this article:
Lloyd Sumner.
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Proteomic characterization of bradyrhizobium diazoefficiens bacteroids reveals a post-symbiotic, hemibiotrophic-like lifestyle of the bacteria within senescing soybean nodules. Strodtman KN, Frank S, Stevenson S, Thelen JJ, Emerich DW. International Journal of Molecular Sciences; 19(12):3947.
Date published:
December 1, 2018
Featured in this article:
Jay Thelen.
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Evolutionary pathway for the 2017 emergence of a novel highly pathogenic avian influenza A(H7N9) virus among domestic poultry in Tennessee, United States. Li L, DeLiberto TJ, Killian ML, Torchetti MK, Wan X-F. Virology; 525:32-39.
Date published:
December 1, 2018
Featured in this article:
XiuFeng “Henry” Wan.
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Tissue tropisms opt for transmissible reassortants during avian and swine influenza A virus co-infection in swine. Zhang X, Sun H, Cunningham FL, Li L, Hanson-Dorr K, Hopken MW, Cooley J, Long L-P, Baroch JA, Li T, Schmit BS, Lin X, Olivier AK, Jarman RG, DeLiberto TJ, Wan X-F. PLoS Pathogens; 14(12):e1007417.
Date published:
December 1, 2018
Featured in this article:
XiuFeng “Henry” Wan.
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Author Correction: Applications and efficiencies of the first cat 63K DNA array (Scientific Reports DOI: 10.1038/s41598-018-25438-0). Gandolfi B, Alhaddad H, Abdi M, Bach LH, Creighton EK, Davis BW, Decker JE, Dodman NH, Grahn JC, Grahn RA, Haase B, Haggstrom J, Hamilton MJ, Helps CR, Kurushima JD, Lohi H, Longeri M, Malik R, Meurs KM, Montague MJ, Mullikin JC, Murphy WJ, Nilson SM, Pedersen NC, Peterson CB, Rusbridge C, Saif R, Shelton DG, Warren WC, Wasim M, Lyons LA. Scientific Reports; 8(1):8746.
Date published:
December 1, 2018
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Wes Warren.
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Long-term experimental hybridisation results in the evolution of a new sex chromosome in swordtail fish. Franchini P, Jones JC, Xiong P, Kneitz S, Gompert Z, Warren WC, Walter RB, Meyer A, Schartl M. Nature Communications; 9(1):5136.
Date published:
December 1, 2018
Featured in this article:
Wes Warren.
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Gene expression variation and parental allele inheritance in a Xiphophorus interspecies hybridization model. Lu Y, Boswell M, Boswell W, Kneitz S, Klotz B, Savage M, Salinas R, Marks R, Regneri J, Postlethwait J, Warren WC, Schartl M, Walter R. PLoS Genetics; 14(12):e1007875.
Date published:
December 1, 2018
Featured in this article:
Wes Warren.
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An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12. Keasar C, McGuffin LJ, Wallner B, Chopra G, Adhikari B, Bhattacharya D, Blake L, Bortot LO, Cao R, Dhanasekaran BK, Dimas I, Faccioli RA, Faraggi E, Ganzynkowicz R, Ghosh S, Ghosh S, Giełdoń A, Golon L, He Y, Heo L, Hou J, Khan M, Khatib F, Khoury GA, Kieslich C, Kim DE, Krupa P, Lee GR, Li H, Li J, Lipska A, Liwo A, Maghrabi AHA, Mirdita M, Mirzaei S, Mozolewska MA, Onel M, Ovchinnikov S, Shah A, Shah U, Sidi T, Sieradzan AK, Ślusarz M, Ślusarz R, Smadbeck J, Tamamis P, Trieber N, Wirecki T, Yin Y, Zhang Y, Bacardit J, Baranowski M, Chapman N, Cooper S, Defelicibus A, Flatten J, Koepnick B, Popović Z, Zaborowski B, Baker D, Cheng J, Czaplewski C, Delbem ACB, Floudas C, Kloczkowski A, Ołdziej S, Levitt M, Scheraga H, Seok C, Söding J, Vishveshwara S, Xu D, Caglar A, Coral A, MacMillan A, Lubow A, Failer B, Kestemont B, Landers CR, Painter CR, Garnier C, Sellin C, Janz D, Wheeler DC, Simon V, Flear DM, Croze E, McIlvaine GV, Beecher G, Lawrie G, Ykman G, Feldmann H, Fuentes HK, Terumasa H, Kovanecz I, Longino JA III, Nijland JH, Diderich JA, Canfield JM, Eriksson J, Slone JD, Appel JG, Mitchell J, Mitch J, Loots-Boiy J, Brownlee JM, Wilson K, Clayton KT, Deford KE, Abbey KJ, Withers L, Wei L, Ives L, Miller LA, Carpenter L, Sharma MG, Ricci M, Binfield MS, Davids MJ, Gaebel M, Cassidy MD, Fagiola M, Pfützenreuter M, Barlow N, Triggiani PJ IV, Innes RBM, Leduc R, Dos Santos Gomes RLC, Morneau RLR, Zaccanelli SJ, Kleinfelter SC, Van Der Laan TJA, Bausewein T, George TJ, Mikhail V, Barmettler W, Crivelli SN. Scientific Reports; 8(1):9939.
Date published:
December 1, 2018
Featured in this article:
Dong Xu.
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Improving Protein Gamma-Turn Prediction Using Inception Capsule Networks. Fang C, Shang Y, Xu D. Scientific Reports; 8(1):15741.
Date published:
December 1, 2018
Featured in this article:
Dong Xu.
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Large-scale prediction of protein ubiquitination sites using a multimodal deep architecture. He F, Wang R, Li J, Bao L, Xu D, Zhao X. BMC Systems Biology; 12:109.
Date published:
November 22, 2018
Featured in this article:
Dong Xu.
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The anti-apoptotic proteins NAF-1 and iASPP interact to drive apoptosis in cancer cells. Iosub-Amir A, Bai F, Sohn Y-S, Song L, Tamir S, Marjault H-B, Mayer G, Karmi O, Jennings PA, Mittler R, Onuchic JN, Friedler A, Nechushtai R. Chemical Science; 10(3):665-673.
Date published:
November 20, 2018
Featured in this article:
Ron Mittler.
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Central roles and regulatory mechanisms of dual-specificity MAPK phosphatases in developmental and stress signaling. Jiang L, Chen Y, Luo L, Peck SC. Frontiers in Plant Science; 871:1697.
Date published:
November 20, 2018
Featured in this article:
Scott Peck.
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Genomic analyses based on pulmonary adenocarcinoma in situ reveal early lung cancer signature 11 Medical and Health Sciences 1112 Oncology and Carcinogenesis. Li D, Yang W, Zhang Y, Yang JY, Guan R, Xu D, Yang MQ. BMC Medical Genomics; 11:106.
Date published:
November 20, 2018
Featured in this article:
Dong Xu.
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Erratum to: Inositol phosphates are assembly co-factors for HIV-1 (Nature, (2018), 560, 7719, (509-512), 10.1038/s41586-018-0396-4). Dick RA, Zadrozny KK, Xu C, Schur FKM, Lyddon TD, Ricana CL, Wagner JM, Perilla JR, Ganser-Pornillos BK, Johnson MC, Pornillos O, Vogt VM. Nature; 563(7731):E22.
Date published:
November 15, 2018
Featured in this article:
Marc Johnson.
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The role of autophagy in iNKT cell development. Yang G, Driver DP, Van Kaer L. Frontiers in Immunology; 9(NOV):2653.
Date published:
November 14, 2018
Featured in this article:
John Driver.
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Integrating networks, Phylogenomics, and population genomics for the study of polyploidy. Blischak PD, Mabry ME, Conant GC, Pires JC. Annual Review of Ecology, Evolution, and Systematics; 49(2):253-278.
Date published:
November 2, 2018
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.
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Monocot plastid phylogenomics, timeline, net rates of species diversification, the power of multi-gene analyses, and a functional model for the origin of monocots. Givnish TJ, Zuluaga A, Spalink D, Soto Gomez M, Lam VKY, Saarela JM, Sass C, Iles WJD, de Sousa DJL, Leebens-Mack J, Chris Pires J, Zomlefer WB, Gandolfo MA, Davis JI, Stevenson DW, dePamphilis C, Specht CD, Graham SW, Barrett CF, Ané C. American Journal of Botany; 105(11):1888-1910.
Date published:
November 1, 2018
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.
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Abatement of 2,4-D by H₂O₂ solar photolysis and solar photo-Fenton-like process with minute Fe(III) concentrations. Serra-Clusellas A, De Angelis L, Lin C-H, Vo P, Bayati M, Sumner L, Lei Z, Amaral NB, Bertini LM, Mazza J, Pizzio LR, Stripeikis JD, Rengifo-Herrera JA, Fidalgo de Cortalezzi MM. Water Research; 144:572-580.
Date published:
November 1, 2018
Featured in this article:
Lloyd Sumner.
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The role of gene flow in rapid and repeated evolution of cave-related traits in Mexican tetra, Astyanax mexicanus. Herman A, Brandvain Y, Weagley J, Jeffery WR, Keene AC, Kono TJY, Bilandžija H, Borowsky R, Espinasa L, O'Quin K, Ornelas-García CP, Yoshizawa M, Carlson B, Maldonado E, Gross JB, Cartwright RA, Rohner N, Warren WC, McGaugh SE. Molecular Ecology; 27(22):4397-4416.
Date published:
November 1, 2018
Featured in this article:
Wes Warren.
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Erratum to: Ancient hybridization and strong adaptation to viruses across African vervet monkey populations (Nature Genetics, (2017), 49, 12, (1705-1713), 10.1038/ng.3980). Svardal H, Jasinska AJ, Apetrei C, Coppola G, Huang Y, Schmitt CA, Jacquelin B, Ramensky V, Müller-Trutwin M, Antonio M, Weinstock G, Grobler JP, Dewar K, Wilson RK, Turner TR, Warren WC, Freimer NB, Nordborg M. Nature Genetics; 50(11):1617.
Date published:
November 1, 2018
Featured in this article:
Wes Warren.
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Application of CRISPR/Cas9 to Tragopogon (Asteraceae), an evolutionary model for the study of polyploidy. Shan S, Mavrodiev EV, Li R, Zhang Z, Hauser BA, Soltis PS, Soltis DE, Yang B. Molecular Ecology Resources; 18(6):1427-1443.
Date published:
November 1, 2018
Featured in this article:
Bing Yang.
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Imprinting of repeated influenza A/H3 exposures on antibody quantity and antibody quality: Implications for seasonal vaccine strain selection and vaccine performance. Kosikova M, Li L, Radvak P, Ye Z, Wan X-F, Xie H. Clinical Infectious Diseases; 67(10):1523-1532.
Date published:
October 30, 2018
Featured in this article:
XiuFeng “Henry” Wan.
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Aptamer-displaying peptide amphiphile micelles as a cell-targeted delivery vehicle of peptide cargoes. Smith JD, Cardwell LN, Porciani D, Nguyen JA, Zhang R, Gallazzi F, Tata RR, Burke DH, Daniels MA, Ulery BD. Physical Biology; 15(6):065006.
Date published:
October 22, 2018
Featured in this article:
Donald Burke-Agüero.
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βTrCP is Required for HIV-1 Vpu Modulation of CD4, GaLV Env, and BST-2/Tetherin. Song YE, Cyburt D, Lucas TM, Gregory DA, Lyddon TD, Johnson MC. Viruses; 10(10):573.
Date published:
October 19, 2018
Featured in this article:
Marc Johnson.
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Phosphate deficiency negatively affects early steps of the symbiosis between common bean and Rhizobia. Isidra-Arellano MC, Reyero-Saavedra MR, Sánchez-Correa MS, Pingault L, Sen S, Joshi T, Girard L, Castro-Guerrero NA, Mendoza-Cozatl DG, Libault M, Valdés-López O. Genes; 9(10):498.
Date published:
October 15, 2018
Featured in this article:
Trupti Joshi,
David Mendoza-Cózatl.
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Changes in iron availability in Arabidopsis are rapidly sensed in the leaf vasculature and impaired sensing leads to opposite transcriptional programs in leaves and roots. Khan MA, Castro-Guerrero NA, McInturf SA, Nguyen NT, Dame AN, Wang J, Bindbeutel RK, Joshi T, Jurisson SS, Nusinow DA, Mendoza-Cozatl DG. Plant Cell and Enviroment; 41(10):2263-2276.
Date published:
October 1, 2018
Featured in this article:
Trupti Joshi,
David Mendoza-Cózatl.
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Contribution of a multifunctional polymerase region of footand-mouth disease virus to lethal mutagenesis. De La Higuera I, Ferrer-Octa C, Moreno E, De Ávila AI, Soria ME, Singh K, Caridi F, Sobrino F, Sarafianos SG, Perales C, Verdaguer N, Domingo E. Journal of Virology; 92(20):e01119.
Date published:
October 1, 2018
Featured in this article:
Kamlendra Singh.
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Antiretroviral potency of 4⁰-ethnyl-2⁰-fluoro-2⁰-deoxyadenosine, tenofovir alafenamide and second-generation NNRTIs across diverse HIV-1 subtypes. Njenda DT, Aralaguppe SG, Singh K, Rao R, Sönnerborg A, Sarafianos SG, Neogi U. Journal of Antimicrobial Chemotherapy; 73(10):2721-2728.
Date published:
October 1, 2018
Featured in this article:
Kamlendra Singh.
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Genetic evidence supports sporadic and independent introductions of subtype H5 low-pathogenic avian influenza A viruses from wild birds to domestic poultry in North America. Li L, Bowman AS, DeLiberto TJ, Killian ML, Krauss S, Nolting JM, Torchetti MK, Ramey AM, Reeves AB, Stallknecht DE, Webby RJ, Wan X-F. Journal of Virology; 92(19):e00913.
Date published:
October 1, 2018
Featured in this article:
XiuFeng “Henry” Wan.
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A content-based recommender system for computer science publications. Wang D, Liang Y, Xu D, Feng X, Guan R. Knowledge-Based Systems; 157:1-9.
Date published:
October 1, 2018
Featured in this article:
Dong Xu.
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A Direct Comparison of IV and ICV Delivery Methods for Gene Replacement Therapy in a Mouse Model of SMARD1. Shababi M, Villalón E, Kaifer KA, DeMarco V, Lorson CL. Molecular Therapy - Methods and Clinical Development; 10:348-360.
Date published:
September 21, 2018
Featured in this article:
Christian Lorson.
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Docosahexaenoic acid (DHA): An essential nutrient and a nutraceutical for brain health and diseases. Sun GY, Simonyi A, Fritsche KL, Chuang DY, Hannink M, Gu Z, Greenlief CM, Yao JK, Lee JC, Beversdorf DQ. Prostaglandins Leukotrienes and Essential Fatty Acids; 136:3-13.
Date published:
September 1, 2018
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.
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Rapid Accumulation of Glutathione During Light Stress in Arabidopsis. Choudhury FK, Devireddy AR, Azad RK, Shulaev V, Mittler R. Plant and Cell Physiology; 59(9):1817-1826.
Date published:
September 1, 2018
Featured in this article:
Ron Mittler.
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Transcriptome-wide comparison of selenium hyperaccumulator and nonaccumulator Stanleya species provides new insight into key processes mediating the hyperaccumulation syndrome. Wang J, Cappa JJ, Harris JP, Edger PP, Zhou W, Pires JC, Adair M, Unruh SA, Simmons MP, Schiavon M, Pilon-Smits EAH. Plant Biotechnology Journal; 16(9):1582-1594.
Date published:
September 1, 2018
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.
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Observed metabolic asymmetry within soybean root nodules reflects unexpected complexity in rhizobacteria-legume metabolite exchange. Veličković D, Agtuca BJ, Stopka SA, Vertes A, Koppenaal DW, Paša-Tolić L, Stacey G, Anderton CR. ISME Journal; 12(9):2335-2338.
Date published:
September 1, 2018
Featured in this article:
Gary Stacey.
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Mutation W222L at the receptor binding site of hemagglutinin could facilitate viral adaption from equine Influenza A(H3N8) virus to dogs. Wen F, Blackmon S, Olivier AK, Li L, Guan M, Sun H, Wang PG, Wan X-F. Journal of Virology; 92(18):e01115.
Date published:
September 1, 2018
Featured in this article:
XiuFeng “Henry” Wan.
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Inositol phosphates are assembly co-factors for HIV-1. Dick RA, Zadrozny KK, Xu C, Schur FKM, Lyddon TD, Ricana CL, Wagner JM, Perilla JR, Ganser-Pornillos BK, Johnson MC, Pornillos O, Vogt VM. Nature; 560(7719):509-512.
Date published:
August 23, 2018
Featured in this article:
Marc Johnson.
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Targeted mutation of GA20ox-2 gene using CRISPR/Cas9 system generated semi-dwarf phenotype in rice. Santoso TJ, Trijatmiko KR, Char SN, Yang B, Wang K. IOP Conference Series: Earth and Environmental Science; 482(1):012027.
Date published:
August 20, 2018
Featured in this article:
Bing Yang.
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Tcp transcription factors interact with npr1 and contribute redundantly to systemic acquired resistance. Li M, Chen H, Chen J, Chang M, Palmer IA, Gassmann W, Liu F, Fu ZQ. Frontiers in Plant Science; 9:1153.
Date published:
August 14, 2018
Featured in this article:
Walter Gassmann.
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Embryogenic Competence Acquisition in Sugar Cane Callus Is Associated with Differential H ⁺ -Pump Abundance and Activity. Passamani LZ, Bertolazi AA, Ramos AC, Santa-Catarina C, Thelen JJ, Silveira V. Journal of Proteome Research; 17(8):2767-2779.
Date published:
August 3, 2018
Featured in this article:
Jay Thelen.
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Structural implications of genotypic variations in HIV-1 integrase from diverse subtypes. Rogers L, Obasa AE, Jacobs GB, Sarafianos SG, Sönnerborg A, Neogi U, Singh K. Frontiers in Microbiology; 9(AUG):1754.
Date published:
August 2, 2018
Featured in this article:
Kamlendra Singh.
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Editing of an alpha-kafirin gene family increases digestibility and protein quality in sorghum. Li A, Jia S, Yobi A, Ge Z, Sato SJ, Zhang C, Angelovici R, Clemente TE, Holding DR. Plant Physiology; 177(4):1425-1438.
Date published:
August 1, 2018
Featured in this article:
Ruthie Angelovici.
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Molecular adaptations for sensing and securing prey and insight into amniote genome diversity from the garter snake genome. Perry BW, Card DC, Mcglothlin JW, Pasquesi GIM, Adams RH, Schield DR, Hales NR, Corbin AB, Demuth JP, Horrmann FG, Vandewege MW, Schott RK, Bhattacharyya N, Chang BSW, Casewell NR, Whiteley G, Reyes-Velasco J, Mackessy SP, Gamble T, Storey KB, Biggar KK, Passow CN, Kuo C-H, Mcgaugh SE, Bronikowski AM, De Koning APJ, Edwards SV, Pfrender ME, Minx P, Brodie ED, Brodie ED, Warren WC, Castoe TA. Genome Biology and Evolution; 10(8):2110-2129.
Date published:
August 1, 2018
Featured in this article:
Wes Warren.
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ITGA1 is upregulated in response to oxygen over time in a BMP4 model of trophoblast. Karvas RM, Yang Y, Ezashi T, Schust DJ, Roberts RM, Schulz LC. Molecular Reproduction and Development; 85(8-9):738-739.
Date published:
August 1, 2018
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.
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Variation in seed allergen content from three varieties of soybean cultivated in nine different locations in Iowa, Illinois, and Indiana. McClain S, Stevenson SE, Brownie C, Herouet-Guicheney C, Herman RA, Ladics GS, Privalle L, Ward JM, Doerrer N, Thelen JJ. Frontiers in Plant Science; 9:1025.
Date published:
July 23, 2018
Featured in this article:
Jay Thelen.
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Parvovirus minute virus of mice interacts with sites of cellular DNA damage to establish and amplify its lytic infection. Majumder K, Wang J, Boftsi M, Fuller MS, Rede JE, Joshi T, Pintel DJ. eLife; 7:e37750.
Date published:
July 20, 2018
Featured in this article:
Trupti Joshi.
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CarbonylDB: A curated data-resource of protein carbonylation sites. Prasad Rao RS, Zhang N, Xu D, MaxMoøller I. Bioinformatics; 34(14):2518-2520.
Date published:
July 15, 2018
Featured in this article:
Dong Xu.
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The G-Protein–Coupled Receptor ALX/Fpr2 Regulates Adaptive Immune Responses in Mouse Submandibular Glands. Wang C-S, Baker OJ. American Journal of Pathology; 188(7):1555-1562.
Date published:
July 1, 2018
Featured in this article:
Olga Baker.
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Pathogen-induced AdDjSKI of the wild peanut, Arachis diogoi, potentiates tolerance of multiple stresses in E. coli and tobacco. Rampuria S, Bag P, Rogan CJ, Sharma A, Gassmann W, Kirti PB. Plant Science; 272:62-74.
Date published:
July 1, 2018
Featured in this article:
Walter Gassmann.
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Increased transpiration is correlated with reduced boron deficiency symptoms in the maize tassel-less1 mutant. Matthes MS, Robil JM, Tran T, Kimble A, McSteen P. Physiologia Plantarum; 163(3):344-355.
Date published:
July 1, 2018
Featured in this article:
Paula McSteen.
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ROS-induced ROS release in plant and animal cells. Zandalinas SI, Mittler R. Free Radical Biology and Medicine; 122:21-27.
Date published:
July 1, 2018
Featured in this article:
Ron Mittler.
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P2Y2R deletion ameliorates sialadenitis in IL-14α-transgenic mice. Woods LT, Camden JM, Khalafalla MG, Petris MJ, Erb L, Ambrus JL Jr, Weisman GA. Oral Diseases; 24(5):761-771.
Date published:
July 1, 2018
Featured in this article:
Michael Petris,
Gary Weisman.
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Homoeologous exchange is a major cause of gene presence/absence variation in the amphidiploid Brassica napus. Hurgobin B, Golicz AA, Bayer PE, Chan C-KK, Tirnaz S, Dolatabadian A, Schiessl SV, Samans B, Montenegro JD, Parkin IAP, Pires JC, Chalhoub B, King GJ, Snowdon R, Batley J, Edwards D. Plant Biotechnology Journal; 16(7):1265-1274.
Date published:
July 1, 2018
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.
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The Physcomitrella patens gene atlas project: large-scale RNA-seq based expression data. Perroud P-F, Haas FB, Hiss M, Ullrich KK, Alboresi A, Amirebrahimi M, Barry K, Bassi R, Bonhomme S, Chen H, Coates JC, Fujita T, Guyon-Debast A, Lang D, Lin J, Lipzen A, Nogué F, Oliver MJ, Ponce de León I, Quatrano RS, Rameau C, Reiss B, Reski R, Ricca M, Saidi Y, Sun N, Szövényi P, Sreedasyam A, Grimwood J, Stacey G, Schmutz J, Rensing SA. Plant Journal; 95(1):168-182.
Date published:
July 1, 2018
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Gary Stacey.
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AtOPT6 protein functions in long-distance transport of glutathione in arabidopsis thaliana. Wongkaew A, Asayama K, Kitaiwa T, Nakamura S-I, Kojima K, Stacey G, Sekimoto H, Yokoyama T, Ohkama-Ohtsu N. Plant and Cell Physiology; 59(7):1443-1451.
Date published:
July 1, 2018
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Gary Stacey.
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Comparison of Xiphophorus and human melanoma transcriptomes reveals conserved pathway interactions. Lu Y, Boswell M, Boswell W, Kneitz S, Hausmann M, Klotz B, Regneri J, Savage M, Amores A, Postlethwait J, Warren W, Schartl M, Walter R. Pigment Cell and Melanoma Research; 31(4):496-508.
Date published:
July 1, 2018
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Wes Warren.
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Effects of treatment of preweaning dairy calves with recombinant bovine somatotropin on immune responses and somatotropic axis. Belli AL, Reis RB, Veronese A, Moreira R, Flanagan K, Driver J, Nelson CD, Clapper JA, Ballou MA, Jeong KC, Chebel RC. Journal of Dairy Science; 101(7):6602-6615.
Date published:
July 1, 2018
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John Driver.
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Specification of trophoblast from embryonic stem cells exposed to BMP4. Roberts RM, Ezashi T, Sheridan MA, Yang Y. Biology of Reproduction; 99(1):212-224.
Date published:
July 1, 2018
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African and Asian strains of Zika virus differ in their ability to infect and lyse primitive human placental trophoblast. Sheridan MA, Balaraman V, Schust DJ, Ezashi T, Michael Roberts R, Franz AWE. PLoS ONE; 13(7):e0200086.
Date published:
July 1, 2018
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High-resolution comparative analysis of great ape genomes. Kronenberg ZN, Fiddes IT, Gordon D, Murali S, Cantsilieris S, Meyerson OS, Underwood JG, Nelson BJ, Chaisson MJP, Dougherty ML, Munson KM, Hastie AR, Diekhans M, Hormozdiari F, Lorusso N, Hoekzema K, Qiu R, Clark K, Raja A, Welch AE, Sorensen M, Baker C, Fulton RS, Armstrong J, Graves-Lindsay TA, Denli AM, Hoppe ER, Hsieh P, Hill CM, Pang AWC, Lee J, Lam ET, Dutcher SK, Gage FH, Warren WC, Shendure J, Haussler D, Schneider VA, Cao H, Ventura M, Wilson RK, Paten B, Pollen A, Eichler EE. Science; 360(6393):eaar6343.
Date published:
June 8, 2018
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Wes Warren.
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Controlled chemical modification of biomolecules by femtosecond laser in polar liquids. Gruzdev V, Korkin D, Mooney BP, Havelund JF, Møller IM, Thelen JJ. Proceedings - International Conference Laser Optics 2018, ICLO 2018; 595.
Date published:
June 4, 2018
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Jay Thelen.
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The unique fold and lability of the [2Fe-2S] clusters of NEET proteins mediate their key functions in health and disease. Karmi O, Marjault H-B, Pesce L, Carloni P, Onuchic JN, Jennings PA, Mittler R, Nechushtai R. Journal of Biological Inorganic Chemistry; 23(4):599-612.
Date published:
June 1, 2018
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Ron Mittler.
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Evidence for plant-derived xenomiRs based on a large-scale analysis of public small RNA sequencing data from human samples. Zhao Q, Liu Y, Zhang N, Hu M, Zhang H, Joshi T, Xu D. PLoS ONE; 13(6):e0187519.
Date published:
June 1, 2018
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Trupti Joshi,
Dong Xu.
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Influenza D virus infection in feral swine populations, United States. Ferguson L, Luo K, Olivier AK, Cunningham FL, Blackmon S, Hanson-Dorr K, Sun H, Baroch J, Lutman MW, Quade B, Epperson W, Webby R, DeLiberto TJ, Wan X-F. Emerging Infectious Diseases; 24(6):1020-1028.
Date published:
June 1, 2018
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XiuFeng “Henry” Wan.
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Expression signatures of early-stage and advanced medaka melanomas. Klotz B, Kneitz S, Regensburger M, Hahn L, Dannemann M, Kelso J, Nickel B, Lu Y, Boswell W, Postlethwait J, Warren W, Kunz M, Walter RB, Schartl M. Comparative Biochemistry and Physiology Part - C: Toxicology and Pharmacology; 208:20-28.
Date published:
June 1, 2018
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Wes Warren.
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G2S: A web-service for annotating genomic variants on 3D protein structures. Wang J, Sheridan R, Sumer SO, Schultz N, Xu D, Gao J. Bioinformatics; 34(11):1949-1950.
Date published:
June 1, 2018
Featured in this article:
Dong Xu.
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Diversity of immunoglobulin light chain genes in non-teleost ray-finned fish uncovers IgL subdivision into five ancient isotypes. Guselnikov SV, Baranov KO, Najaskshin AM, Mechetina LV, Chikaev NA, Makunin AI, Kulemzin SV, Andreyushkova DA, Stöck M, Wuertz S, Gessner J, Warren WC, Schartl M, Trifonov VA, Taranin AV. Frontiers in Immunology; 9(MAY):1079.
Date published:
May 28, 2018
Featured in this article:
Wes Warren.
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MU-LOC: A machine-learning method for predicting mitochondrially localized proteins in plants. Zhang N, Rao RSP, Salvato F, Havelund JF, Møller IM, Thelen JJ, Xu D. Frontiers in Plant Science; 9:634.
Date published:
May 23, 2018
Featured in this article:
Jay Thelen,
Dong Xu.
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Controlled laser biochemistry in room-temperature polar liquids by ultrashort laser pulses. Gruzdev V, Korkin D, Mooney BP, Havelund JF, Møller IM, Thelen JJ. Optics InfoBase Conference Papers; Part F92-CLEO_AT 2018:Code 139958.
Date published:
May 13, 2018
Featured in this article:
Jay Thelen.
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Controlled laser biochemistry in room-temperature polar liquids by ultrashort laser pulses. Gruzdev V, Korkin D, Mooney BP, Havelund JF, Møller IM, Thelen JJ. 2018 Conference on Lasers and Electro-Optics, CLEO 2018 - Proceedings; 8426282.
Date published:
May 13, 2018
Featured in this article:
Jay Thelen.
In Vivo Quantitative Monitoring of Subunit Stoichiometry for Metabolic Complexes. Wilson RS, Thelen JJ. Journal of Proteome Research; 17(5):1773-1783.
Date published:
May 4, 2018
Featured in this article:
Jay Thelen.
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Erratum: Author Correction: Genome-Guided Phylo-Transcriptomic Methods and the Nuclear Phylogenetic Tree of the Paniceae Grasses (Scientific reports (2017) 7 1 (13528)). Washburn JD, Schnable JC, Conant GC, Brutnell TP, Shao Y, Zhang Y, Ludwig M, Davidse G, Pires JC. Scientific Reports; 8(1):7120.
Date published:
May 2, 2018
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Genome-wide nucleotide diversity and associations with geography, ploidy level and glucosinolate profiles in Aethionema arabicum (Brassicaceae). Mohammadin S, Wang W, Liu T, Moazzeni H, Ertugrul K, Uysal T, Christodoulou CS, Edger PP, Pires JC, Wright SI, Schranz ME. Plant Systematics and Evolution; 304(5):619-630.
Date published:
May 1, 2018
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Gene expression profiles of ion channels and receptors in mouse resistance arteries: Effects of cell type, vascular bed, and age. Boerman EM, Sen S, Shaw RL, Joshi T, Segal SS. Microcirculation; 25(4):e12452.
Date published:
May 1, 2018
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Trupti Joshi.
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Pathway-specific metabolome analysis with ¹⁸ O ₂ -labeled Medicago truncatula via a mass spectrometry-based approach. Kera K, Find DD, Wherritt DJ, Nagashima Y, Shimada N, Ara T, Ogata Y, Sumner LW, Suzuki H. Metabolomics; 14(5):71.
Date published:
May 1, 2018
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Lloyd Sumner.
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Improved genome assembly and annotation for the Rock Pigeon (Columba livia). Holt C, Campbell M, Keays DA, Edelman N, Kapusta A, Maclary E, Domyan ET, Suh A, Warren WC, Yandell M, Thomas P Gilbert M, Shapiro MD. G3: Genes, Genomes, Genetics; 8(5):1391-1398.
Date published:
May 1, 2018
Featured in this article:
Wes Warren.
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MUFOLD-SS: New deep inception-inside-inception networks for protein secondary structure prediction. Fang C, Shang Y, Xu D. Proteins: Structure, Function and Bioinformatics; 86(5):592-598.
Date published:
May 1, 2018
Featured in this article:
Dong Xu.
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Inferring roles in defense from metabolic allocation of rice diterpenoids. Lu X, Zhang J, Brown B, Li R, Rodríguez-Romero J, Berasategui A, Liu B, Xu M, Luo D, Pan Z, Baerson SR, Gershenzon J, Li Z, Sesma A, Yang B, Peters RJ. Plant Cell; 30(5):1119-1131.
Date published:
May 1, 2018
Featured in this article:
Bing Yang.
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Topological data analysis as a morphometric method: Using persistent homology to demarcate a leaf morphospace. Li M, An H, Angelovici R, Bagaza C, Batushansky A, Clark L, Coneva V, Donoghue MJ, Edwards E, Fajardo D, Fang H, Frank MH, Gallaher T, Gebken S, Hill T, Jansky S, Kaur B, Klahs PC, Klein LL, Kuraparthy V, Londo J, Migicovsky Z, Miller A, Mohn R, Myles S, Otoni WC, Pires JC, Rieffer E, Schmerler S, Spriggs E, Topp CN, Van Deynze A, Zhang K, Zhu L, Zink BM, Chitwood DH. Frontiers in Plant Science; 9:553.
Date published:
April 25, 2018
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Ruthie Angelovici,
.
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Acetylation and phosphorylation of human TFAM regulate TFAM-DNA interactions via contrasting mechanisms. King GA, Hashemi Shabestari M, Taris KK-H, Pandey AK, Venkatesh S, Thilagavathi J, Singh K, Krishna Koppisetti R, Temiakov D, Roos WH, Suzuki CK, Wuite GJL. Nucleic Acids Research; 46(7):3633-3642.
Date published:
April 20, 2018
Featured in this article:
Kamlendra Singh.
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Erratum: Author Correction: Analyses of HIV-1 integrase sequences prior to South African national HIV-treatment program and availability of integrase inhibitors in Cape Town, South Africa (Scientific reports (2018) 8 1 (4709)). Brado D, Obasa AE, Ikomey GM, Cloete R, Singh K, Engelbrecht S, Neogi U, Jacobs GB. Scientific Reports; 8(1):6262.
Date published:
April 16, 2018
Featured in this article:
Kamlendra Singh.
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Highly Efficient A·T to G·C Base Editing by Cas9n-Guided tRNA Adenosine Deaminase in Rice. Yan F, Kuang Y, Ren B, Wang J, Zhang D, Lin H, Yang B, Zhou X, Zhou H. Molecular Plant; 11(4):631-634.
Date published:
April 2, 2018
Featured in this article:
Bing Yang.
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The pioneer bridge: A long-term, non-invasive, esthetic composite bonded bridge for the replacement of anterior teeth. Wang FS, Cera CV, Baker OJ, Janis JN. International Journal of Dentistry and Oral Science; 5(4):630-634.
Date published:
April 1, 2018
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Olga Baker.
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Phylotranscriptomic analysis and genome evolution of the Cypripedioideae (Orchidaceae). Unruh SA, McKain MR, Lee Y-I, Yukawa T, McCormick MK, Shefferson RP, Smithson A, Leebens-Mack JH, Pires JC. American Journal of Botany; 105(4):631-640.
Date published:
April 1, 2018
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Editorial overview: Genome studies and molecular genetics: Treasure troves of evolution. Van de Peer Y, Pires JC. Current Opinion in Plant Biology; 42:iii-v.
Date published:
April 1, 2018
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Erratum: Zoonotic risk, pathogenesis, and transmission of avian-origin H3N2 canine influenza virus. [J Virol, 91, 21, (2017) (e00637-17)] DOI: 10.1128/JVI.00637-17. Sun H, Blackmon S, Yang G, Waters K, Li T, Tangwangvivat R, Xu Y, Shyu D, Wen F, Cooley J, Senter L, Lin X, Jarman R, Hanson L, Webby R, Wan X-F. Journal of Virology; 92(8):e02227-17.
Date published:
April 1, 2018
Featured in this article:
XiuFeng “Henry” Wan.
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Clonal polymorphism and high heterozygosity in the celibate genome of the Amazon molly. Warren WC, García-Pérez R, Xu S, Lampert KP, Chalopin D, Stöck M, Loewe L, Lu Y, Kuderna L, Minx P, Montague MJ, Tomlinson C, Hillier LW, Murphy DN, Wang J, Wang Z, Garcia CM, Thomas GCW, Volff J-N, Farias F, Aken B, Walter RB, Pruitt KD, Marques-Bonet T, Hahn MW, Kneitz S, Lynch M, Schartl M. Nature Ecology and Evolution; 2(4):669-679.
Date published:
April 1, 2018
Featured in this article:
Wes Warren.
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SWEET11 and 15 as key players in seed filling in rice. Yang J, Luo D, Yang B, Frommer WB, Eom J-S. New Phytologist; 218(2):604-615.
Date published:
April 1, 2018
Featured in this article:
Bing Yang.
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Impaired phloem loading in zmsweet13a,b,c sucrose transporter triple knock-out mutants in Zea mays. Bezrutczyk M, Hartwig T, Horschman M, Char SN, Yang J, Yang B, Frommer WB, Sosso D. New Phytologist; 218(2):594-603.
Date published:
April 1, 2018
Featured in this article:
Bing Yang.
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Effect of adding clay with or without a Saccharomyces cerevisiae fermentation product on the health and performance of lactating dairy cows challenged with dietary aflatoxin B₁. Jiang Y, Ogunade IM, Kim DH, Li X, Pech-Cervantes AA, Arriola KG, Oliveira AS, Driver JP, Ferraretto LF, Staples CR, Vyas D, Adesogan AT. Journal of Dairy Science; 101(4):3008-3020.
Date published:
April 1, 2018
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John Driver.
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Rare Disease Mechanisms Identified by Genealogical Proteomics of Copper Homeostasis Mutant Pedigrees. Zlatic SA, Vrailas-Mortimer A, Gokhale A, Carey LJ, Scott E, Burch R, McCall MM, Rudin-Rush S, Davis JB, Hartwig C, Werner E, Li L, Petris M, Faundez V. Cell Systems; 6(3):368-380.e6.
Date published:
March 28, 2018
Featured in this article:
Michael Petris.
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Interaction of rice and xanthomonas TAL effectors. Char SN, Park S, Yang B. Rice Genomics, Genetics and Breeding; 375-391.
Date published:
March 15, 2018
Featured in this article:
Bing Yang.
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The bacterial type III-secreted protein AvrRps4 is a bipartite effector. Halane MK, Kim SH, Spears BJ, Garner CM, Rogan CJ, Okafor EC, Su J, Bhattacharjee S, Gassmann W. PLoS Pathogens; 14(3):e1006984.
Date published:
March 1, 2018
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Walter Gassmann.
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Family A and B DNA polymerases in cancer: Opportunities for therapeutic interventions. Shanbhag V, Sachdev S, Flores JA, Modak MJ, Singh K. Biology; 7(1):5.
Date published:
March 1, 2018
Featured in this article:
Kamlendra Singh.
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Brassicales phylogeny inferred from 72 plastid genes: A reanalysis of the phylogenetic localization of two paleopolyploid events and origin of novel chemical defenses. Edger PP, Hall JC, Harkess A, Tang M, Coombs J, Mohammadin S, Schranz ME, Xiong Z, Leebens-Mack J, Meyers BC, Sytsma KJ, Koch MA, Al-Shehbaz IA, Pires JC. American Journal of Botany; 105(3):463-469.
Date published:
March 1, 2018
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Preferential retention of genes from one parental genome after polyploidy illustrates the nature and scope of the genomic conflicts induced by hybridization. Emery M, Willis MMS, Hao Y, Barry K, Oakgrove K, Peng Y, Schmutz J, Lyons E, Pires JC, Edger PP, Conant GC. PLoS Genetics; 14(3):e1007267.
Date published:
March 1, 2018
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Patterns of population variation in two paleopolyploid eudicot lineages suggest that dosage-based selection on homeologs is long-lived. Hao Y, Washburn JD, Rosenthal J, Nielsen B, Lyons E, Edger PP, Pires JC, Conant GC. Genome Biology and Evolution; 10(3):999-1011.
Date published:
March 1, 2018
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Lipopolysaccharides trigger two successive bursts of reactive oxygen species at distinct cellular locations. Shang-guan K, Wang M, Htwe NMPS, Li P, Li Y, Qi F, Zhang D, Cao M, Kim C, Weng H, Cen H, Black IM, Azadi P, Carlson RW, Stacey G, Liang Y. Plant Physiology; 176(3):2543-2556.
Date published:
March 1, 2018
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Gary Stacey.
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Absolute Quantitation of Plant Proteins. Ahsan N, Wilson RS, Thelen JJ. Current protocols in plant biology; 3(1):1-13.
Date published:
March 1, 2018
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Jay Thelen.
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Mapping and confirmation of loci for salt tolerance in a novel soybean germplasm, Fiskeby III. Do TD, Vuong TD, Dunn D, Smothers S, Patil G, Yungbluth DC, Chen P, Scaboo A, Xu D, Carter TE, Nguyen HT, Grover Shannon J. Theoretical and Applied Genetics; 131(3):513-524.
Date published:
March 1, 2018
Featured in this article:
Dong Xu.
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Whole-exome sequencing and microRNA profiling reveal PI3K/AKT pathway’s involvement in juvenile myelomonocytic leukemia. Khan SM, Denney JE, Wang MX, Xu D. Quantitative Biology; 6(1):85-97.
Date published:
March 1, 2018
Featured in this article:
Dong Xu.
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Tolerance to stress combination in tomato plants: New insights in the protective role of melatonin. Martinez V, Nieves-Cordones M, Lopez-Delacalle M, Rodenas R, Mestre TC, Garcia-Sanchez F, Rubio F, Nortes PA, Mittler R, Rivero RM. Molecules; 23(3):535.
Date published:
February 28, 2018
Featured in this article:
Ron Mittler.
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The role of NOD mice in type 1 diabetes research: Lessons from the past and recommendations for the future. Chen Y-G, Mathews CE, Driver JP. Frontiers in Endocrinology; 9(FEB):51.
Date published:
February 23, 2018
Featured in this article:
John Driver.
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Coordinating the overall stomatal response of plants: Rapid leaf-to-leaf communication during light stress. Devireddy AR, Zandalinas SI, Gómez-Cadenas A, Blumwald E, Mittler R. Science Signaling; 11(518):eaam9514.
Date published:
February 20, 2018
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Ron Mittler.
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Ex-vivo antiretroviral potency of newer integrase strand transfer inhibitors cabotegravir and bictegravir in HIV type 1 non-B subtypes. Neogi U, Singh K, Aralaguppe SG, Rogers LC, Njenda DT, Sarafianos SG, Hejdeman B, Sönnerborg A. AIDS; 32(4):469-476.
Date published:
February 20, 2018
Featured in this article:
Kamlendra Singh.
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The genome of Austrofundulus limnaeus offers insights into extreme vertebrate stress tolerance and embryonic development. Wagner JT, Singh PP, Romney AL, Riggs CL, Minx P, Woll SC, Roush J, Warren WC, Brunet A, Podrabsky JE. BMC Genomics; 19(1):155.
Date published:
February 20, 2018
Featured in this article:
Wes Warren.
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Selective vulnerability in neuronal populations in nmd/SMARD1 mice. Villalón E, Shababi M, Kline R, Lorson ZC, Florea KM, Lorson CL. Human Molecular Genetics; 27(4):679-690.
Date published:
February 15, 2018
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Christian Lorson.
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Constant vigilance: plant functions guarded by resistance proteins. Su J, Spears BJ, Kim SH, Gassmann W. Plant Journal; 93(4):637-650.
Date published:
February 1, 2018
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Walter Gassmann.
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Targeted mutagenesis in tetraploid switchgrass (Panicum virgatum L.) using CRISPR/Cas9. Liu Y, Merrick P, Zhang Z, Ji C, Yang B, Fei S-Z. Plant Biotechnology Journal; 16(2):381-393.
Date published:
February 1, 2018
Featured in this article:
Bing Yang.
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Sugar flux and signaling in plant–microbe interactions. Bezrutczyk M, Yang J, Eom J-S, Prior M, Sosso D, Hartwig T, Szurek B, Oliva R, Vera-Cruz C, White FF, Yang B, Frommer WB. Plant Journal; 93(4):675-685.
Date published:
February 1, 2018
Featured in this article:
Bing Yang.
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Effects of supplementation with ruminally protected choline on performance of multiparous Holstein cows did not depend upon prepartum caloric intake. Zenobi MG, Gardinal R, Zuniga JE, Dias ALG, Nelson CD, Driver JP, Barton BA, Santos JEP, Staples CR. Journal of Dairy Science; 101(2):1088-1110.
Date published:
February 1, 2018
Featured in this article:
John Driver.
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Self-oligomerization regulates stability of survival motor neuron protein isoforms by sequestering an SCFSlmb degron. Gray KM, Kaifer KA, Baillat D, Wen Y, Bonacci TR, Ebert AD, Raimer AC, Spring AM, Have ST, Glascock JJ, Gupta K, Van Duyne GD, Emanuele MJ, Lamond AI, Wagner EJ, Lorson CL, Gregory Matera A. Molecular Biology of the Cell; 29(2):96-110.
Date published:
January 15, 2018
Featured in this article:
Christian Lorson.
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“Known Unknowns”: Current Questions in Muscle Satellite Cell Biology. Cornelison DDW. Current Topics in Developmental Biology; 126:205-233.
Date published:
January 1, 2018
Featured in this article:
D Cornelison.
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Assembly of PGAM5 into Multimeric Complexes Provides a Mechanism for Allosteric Regulation of Phosphatase Activity. Tipton P, Su T, Hannink M. Methods in Enzymology; 607:353-372.
Date published:
January 1, 2018
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.
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Cancer as a mutation-driven evolutionary process. Hannink M, Temin HM. Growth Regulation and Carcinogenesis: Volume I; 95-97.
Date published:
January 1, 2018
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.
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Mutation-driven evolution of rev-T. Hannink M, Temin HM. Growth Regulation and Carcinogenesis: Volume I; 99-109.
Date published:
January 1, 2018
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Plant adaptations to the combination of drought and high temperatures. Zandalinas SI, Mittler R, Balfagón D, Arbona V, Gómez-Cadenas A. Physiologia Plantarum; 162(1):2-12.
Date published:
January 1, 2018
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Ron Mittler.
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Extracellular ATP acts on jasmonate signaling to reinforce plant defense. Tripathi D, Zhang T, Koo AJ, Stacey G, Tanaka K. Plant Physiology; 176(1):511-523.
Date published:
January 1, 2018
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Gary Stacey.
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Metabolic noise and distinct subpopulations observed by single cell LAESI mass spectrometry of plant cells in situ. Stopka SA, Khattar R, Agtuca BJ, Anderton CR, Paša-Tolić L, Stacey G, Vertes A. Frontiers in Plant Science; 871:1646.
Date published:
January 1, 2018
Featured in this article:
Gary Stacey.
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Seminal fluid metabolome and epididymal changes after antibiotic treatment in mice. Rosenfeld CS, Javurek AB, Johnson SA, Lei Z, Sumner LW, Hess RA. Reproduction; 156(1):1-10.
Date published:
January 1, 2018
Featured in this article:
Lloyd Sumner.
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A Y161F hemagglutinin substitution increases thermostability and improves yields of 2009 H1N1 influenza A virus in cells. Wen F, Li L, Zhao N, Chiang M-J, Xie-H, Cooley J, Webby R, Wang PG, Wan X-F. Journal of Virology; 92(2):e01621-17.
Date published:
January 1, 2018
Featured in this article:
XiuFeng “Henry” Wan.
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Applications and efficiencies of the first cat 63K DNA array. Gandolfi B, Alhaddad H, Abdi M, Bach LH, Creighton EK, Davis BW, Decker JE, Dodman NH, Grahn JC, Grahn RA, Haase B, Haggstrom J, Hamilton MJ, Helps CR, Kurushima JD, Lohi H, Longeri M, Malik R, Meurs KM, Montague MJ, Mullikin JC, Murphy WJ, Nilson SM, Pedersen NC, Peterson CB, Rusbridge C, Saif R, Shelton DG, Warren WC, Wasim M, Lyons LA. Scientific Reports; 8(1):7024.
Date published:
January 1, 2018
Featured in this article:
Wes Warren.
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Why is a high temperature needed by Thermus thermophilus argonaute during mRNA silencing: A theoretical study. Liu Y, Yu Z, Zhu J, Wang S, Xu D, Han W. Frontiers in Chemistry; 6(JUN):223.
Date published:
January 1, 2018
Featured in this article:
Dong Xu.
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Non-TAL effectors from xanthomonas oryzae pv. Oryzae suppress peptidoglycan-triggered MAPK activation in rice. Long J, Song C, Yan F, Zhou J, Zhou H, Yang B. Frontiers in Plant Science; 871:1857.
Date published:
January 1, 2018
Featured in this article:
Bing Yang.
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Harnessing invariant NKT cells to improve influenza vaccines: A pig perspective. Yang G, Richt JA, Driver JP. International Journal of Molecular Sciences; 19(1):A68.
Date published:
January 1, 2018
Featured in this article:
John Driver.
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Chromosome 19 microRNAs exert antiviral activity independent from type III interferon signaling. Bayer A, Lennemann NJ, Ouyang Y, Sadovsky E, Sheridan MA, Roberts RM, Coyne CB, Sadovsky Y. Placenta; 61:33-38.
Date published:
January 1, 2018
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Pregnancy recognition signals with an emphasis on ruminants. Michael Roberts R, Ezashi T. Encyclopedia of Reproduction; 383-387.
Date published:
January 1, 2018
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2017
Tsetse fly (Glossina pallidipes) midgut responses to Trypanosoma brucei challenge. Bateta R, Wang J, Wu Y, Weiss BL, Warren WC, Murilla GA, Aksoy S, Mireji PO. Parasites and Vectors; 10(1):614.
Date published:
December 19, 2017
Featured in this article:
Wes Warren.
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An endogenous retroviral envelope syncytin and its cognate receptor identified in the viviparous placental Mabuya lizard. Cornelis G, Funk M, Vernochet C, Leal F, Tarazona OA, Meurice G, Heidmann O, Dupressoir A, Miralles A, Ramirez-Pinilla MP, Heidmann T, Roberts RM. Proceedings of the National Academy of Sciences of the United States of America; 114(51):E10991-E11000.
Date published:
December 19, 2017
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MusiteDeep: A deep-learning framework for general and kinase-specific phosphorylation site prediction. Wang D, Zeng S, Xu C, Qiu W, Liang Y, Joshi T, Xu D. Bioinformatics; 33(24):3909-3916.
Date published:
December 15, 2017
Featured in this article:
Trupti Joshi,
Dong Xu.
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Development of ‘KBCommons’ – Universal informatics framework for multi-omics translational research. Narisetti SRK, Zeng S, Lyu Z, Joshi T. Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017; 2017-January:2285-2286.
Date published:
December 15, 2017
Featured in this article:
Trupti Joshi.
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A multi-omics informatics approach for identifying molecular mechanisms and biomarkers in clinical patients with endometriosis. Akter S, Wilshire G, Davis JW, Bromfield J, Crowder S, Joshi T, Pelch K, Schust DJ, Meng A, Barrier B, Nagel SC. Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017; 2017-January:2221-2223.
Date published:
December 15, 2017
Featured in this article:
Trupti Joshi.
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Development of an informatics analytics workflow for DAP-seq data exploration and validation for auxin response factors in maize. Sen, S, Galli M, Gallavotti A, Joshi T. Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017; 2017-January:2300-2301.
Date published:
December 15, 2017
Featured in this article:
Trupti Joshi.
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Leaf shedding as an anti-bacterial defense in Arabidopsis cauline leaves. Patharkar OR, Gassmann W, Walker JC. PLoS Genetics; 13(12):e1007132.
Date published:
December 1, 2017
Featured in this article:
Walter Gassmann.
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Optimization of a series of heterocycles as survival motor neuron gene transcription enhancers. Choi S, Calder AN, Miller EH, Anderson KP, Fiejtek DK, Rietz A, Li H, Cherry JJ, Quist KM, Xing X, Glicksman MA, Cuny GD, Lorson CL, Androphy EA, Hodgetts KJ. Bioorganic and Medicinal Chemistry Letters; 27(23):5144-5148.
Date published:
December 1, 2017
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Christian Lorson.
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Phosphorylation of arabidopsis MAP kinase phosphatase 1 (MKP1) is required for PAMP responses and resistance against bacteria. Jiang L, Anderson JC, González Besteiro MA, Peck SC. Plant Physiology; 175(4):1839-1852.
Date published:
December 1, 2017
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Scott Peck.
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The mitochondrial metallochaperone SCO1 maintains CTR1 at the plasma membrane to preserve copper homeostasis in the murine heart. Baker ZN, Jett K, Boulet A, Hossain A, Cobine PA, Kim B-E, El Zawily AM, Lee L, Tibbits GF, Petris MJ, Leary SC. Human Molecular Genetics; 26(23):4617-4628.
Date published:
December 1, 2017
Featured in this article:
Michael Petris.
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The asparagus genome sheds light on the origin and evolution of a young y chromosome. Harkess A, Zhou J, Xu C, Bowers JE, Van Der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y, Luo S, Chen H, Gao J, Mao Z, Pires JC, Luo M, Kudrna D, Wing RA, Meyers BC, Yi K, Kong H, Lavrijsen P, Sunseri F, Falavigna A, Ye Y, Leebens-Mack JH, Chen G. Nature Communications; 8(1):1279.
Date published:
December 1, 2017
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Genome-Guided Phylo-Transcriptomic Methods and the Nuclear Phylogentic Tree of the Paniceae Grasses. Washburn JD, Schnable JC, Conant GC, Brutnell TP, Shao Y, Zhang Y, Ludwig M, Davidse G, Pires JC. Scientific Reports; 7(1):13528.
Date published:
December 1, 2017
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Extracellular ATP elicits DORN1-mediated RBOHD phosphorylation to regulate stomatal aperture. Chen D, Cao Y, Li H, Kim D, Ahsan N, Thelen J, Stacey G. Nature Communications; 8(1):2265.
Date published:
December 1, 2017
Featured in this article:
Jay Thelen,
Gary Stacey.
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Controlled modification of biomolecules by ultrashort laser pulses in polar liquids. Gruzdev V, Korkin D, Mooney BP, Havelund JF, Møller IM, Thelen JJ. Scientific Reports; 7(1):5550.
Date published:
December 1, 2017
Featured in this article:
Jay Thelen.
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The bacteroid periplasm in soybean nodules is an interkingdom symbiotic space. Strodtman KN, Stevenson SE, Waters JK, Mawhinney TP, Thelen JJ, Polacco JC, Emerich DW. Molecular Plant-Microbe Interactions; 30(12):997-1008.
Date published:
December 1, 2017
Featured in this article:
Jay Thelen.
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Genetic variation and gene expression across multiple tissues and developmental stages in a nonhuman primate. Jasinska AJ, Zelaya I, Service SK, Peterson CB, Cantor RM, Choi O-W, DeYoung J, Eskin E, Fairbanks LA, Fears S, Furterer AE, Huang YS, Ramensky V, Scmitt CA, Svardal H, Jorgensen MJ, Kaplan JR, Villar D, Aken BL, Flicek P, Nag R, Wong ES, Blangero J, Dyer TD, Bogomolov M, Benjamini Y, Weinstock GM, Dewar K, Sabatti C, Wilson RK, Jentsch DJ, Warren W, Coppola G, Woods RP, Freimer NB. Nature Genetics; 49(12):1714-1721.
Date published:
December 1, 2017
Featured in this article:
Wes Warren.
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Ancient hybridization and strong adaptation to viruses across African vervet monkey populations. Svardal H, Jasinska AJ, Apetrei C, Coppola G, Huang Y, Schmitt CA, Jacquelin B, Ramensky V, Müller-Trutwin M, Antonio M, Weinstock G, Grobler JP, Dewar K, Wilson RK, Turner TR, Warren WC, Freimer NB, Nordborg M. Nature Genetics; 49(12):1705-1713.
Date published:
December 1, 2017
Featured in this article:
Wes Warren.
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The Novel Evolution of the Sperm Whale Genome. Warren WC, Kuderna L, Alexander A, Catchen J, Pérez-Silva JG, López-Otín C, Quesada V, Minx P, Tomlinson C, Montague MJ, Farias FHG, Walter RB, Marques-Bonet T, Glenn T, Kieran TJ, Wise SS, Wise JP, Waterhouse RM. Genome Biology and Evolution; 9(12):3260-3264.
Date published:
December 1, 2017
Featured in this article:
Wes Warren.
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The genome and adult somatic transcriptome of the mormyrid electric fish paramormyrops kingsleyae. Gallant JR, Losilla M, Tomlinson C, Warren WC. Genome Biology and Evolution; 9(12):3525-3530.
Date published:
December 1, 2017
Featured in this article:
Wes Warren.
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Understanding the differences of the ligand binding/unbinding pathways between phosphorylated and non-phosphorylated ARH1 using molecular dynamics simulations. Zhu J, Lv Y, Han X, Xu D, Han W. Scientific Reports; 7(1):12439.
Date published:
December 1, 2017
Featured in this article:
Dong Xu.
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Deciphering transcriptional regulation in human embryonic stem cells specified towards a trophoblast fate. Jain A, Ezashi T, Roberts RM, Tuteja G. Scientific Reports; 7(1):17257.
Date published:
December 1, 2017
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Arabidopsis TCP transcription factors interact with the SUMO conjugating machinery in nuclear foci. Mazur MJ, Spears BJ, Djajasaputra A, Van Der Gragt M, Vlachakis G, Beerens B, Gassmann W, Van Den Burg HA. Frontiers in Plant Science; 8:2043.
Date published:
November 30, 2017
Featured in this article:
Walter Gassmann.
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Molecular Dynamics Simulations of the [2Fe-2S] Cluster-Binding Domain of NEET Proteins Reveal Key Molecular Determinants That Induce Their Cluster Transfer/Release. Pesce L, Calandrini V, Marjault H-B, Lipper CH, Rossetti G, Mittler R, Jennings PA, Bauer A, Nechushtai R, Carloni P. Journal of Physical Chemistry B; 121(47):10648-10656.
Date published:
November 30, 2017
Featured in this article:
Ron Mittler.
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Activation of the lrr receptor-like kinase psy1r requires transphosphorylation of residues in the activation loop. Oehlenschlæger CB, Gersby LBA, Ahsan N, Pedersen JT, Kristensen A, Solakova TV, Thelen JJ, Fuglsang AT. Frontiers in Plant Science; 8:2005.
Date published:
November 27, 2017
Featured in this article:
Jay Thelen.
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Effects of evolutionary pressure on histone modifications. Khan SM, Conant G, Xu D. Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017; 2017-January:2267.
Date published:
November 13, 2017
Featured in this article:
Dong Xu.
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A multimodal deep architecture for large-scale protein ubiquitylation site prediction. He F, Bao L, Wang R, Li J, Xu D, Zhao X. Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017; 2017-January:108-113.
Date published:
November 13, 2017
Featured in this article:
Dong Xu.
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Protein loop modeling using deep generative adversarial network. Li Z, Nguyen SP, Xu D, Shang Y. Proceedings - International Conference on Tools with Artificial Intelligence, ICTAI; 2017-November:1085-1091.
Date published:
November 6, 2017
Featured in this article:
Dong Xu.
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A new deep neighbor residual network for protein secondary structure prediction. Fang C, Shang Y, Xu D. Proceedings - International Conference on Tools with Artificial Intelligence, ICTAI; 2017-November:66-71.
Date published:
November 6, 2017
Featured in this article:
Dong Xu.
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Laminin-111-derived peptide conjugated fibrin hydrogel restores salivary gland function. Nam K, Maruyama CL, Wang C-S, Trump BG, Lei P, Andreadis ST, Baker OJ. PLoS ONE; 12(11):e0187069.
Date published:
November 1, 2017
Featured in this article:
Olga Baker.
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A 37-year-old Menkes disease patient—Residual ATP7A activity and early copper administration as key factors in beneficial treatment. Tümer Z, Petris M, Zhu S, Mercer J, Bukrinski J, Bilz S, Baerlocher K, Horn N, Møller LB. Clinical Genetics; 92(5):548-553.
Date published:
November 1, 2017
Featured in this article:
Michael Petris.
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Zoonotic risk, pathogenesis, and transmission of avian-origin H3N2 canine influenza virus. Sun H, Blackmon S, Yang G, Waters K, Li T, Tangwangvivat R, Xu Y, Shyu D, Wen F, Cooley J, Senter L, Lin X, Jarman R, Hanson L, Webby R, Wan X-F. Journal of Virology; 91(21):e00637-17.
Date published:
November 1, 2017
Featured in this article:
XiuFeng “Henry” Wan.
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The roles of plasticity and evolutionary change in shaping gene expression variation in natural populations of extremophile fish. Passow CN, Henpita C, Shaw JH, Quackenbush CR, Warren WC, Schartl M, Arias-Rodriguez L, Kelley JL, Tobler M. Molecular Ecology; 26(22):6384-6399.
Date published:
November 1, 2017
Featured in this article:
Wes Warren.
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A 3-way hybrid approach to generate a new high-quality chimpanzee reference genome (Pan tro 3.0). Kuderna LFK, Tomlinson C, Hillier LW, Tran A, Fiddes IT, Armstrong J, Laayouni H, Gordon D, Huddleston J, Perez RG, Povolotskaya I, Armero AS, Garrido JG, Ho D, Ribeca P, Alioto T, Green RE, Paten B, Navarro A, Betranpetit J, Herrero J, Eichler EE, Sharp AJ, Feuk L, Warren WC, Marques-Bonet T. GigaScience; 6(11):gix098.
Date published:
November 1, 2017
Featured in this article:
Wes Warren.
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Characterizing porcine invariant natural killer T cells: A comparative study with NK cells and T cells. Yang G, Artiaga BL, Lewis ST, Driver JP. Developmental and Comparative Immunology; 76:343-351.
Date published:
November 1, 2017
Featured in this article:
John Driver.
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30 years on from the molecular cloning of interferon-tau. Roberts RM. Reproduction (Cambridge, England); 154(5):E1-E2.
Date published:
November 1, 2017
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.
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Optimization of trans-splicing for Huntington’s disease RNA therapy. Rindt H, Tom CM, Lorson CL, Mattis VB. Frontiers in Neuroscience; 11(OCT):544.
Date published:
October 10, 2017
Featured in this article:
Christian Lorson.
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P2X7 receptor antagonism prevents IL-1 release from salivary epithelial cells and reduces inflammation in a mouse model of autoimmune exocrinopathy. Khalafalla MG, Woods LT, Camden JM, Khan AA, Limesand KH, Petris MJ, Erb L, Weisman GA. Journal of Biological Chemistry; 292(40):16626-16637.
Date published:
October 6, 2017
Featured in this article:
Michael Petris,
Gary Weisman.
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Luxurious nitrogen fertilization of two sugar cane genotypes contrasting for lignin composition causes changes in the stem proteome related to carbon, nitrogen, and oxidant metabolism but does not alter lignin content. Salvato F, Wilson R, Llerena JPP, Kiyota E, Reis KL, Boaretto LF, Balbuena TS, Azevedo RA, Thelen JJ, Mazzafera P. Journal of Proteome Research; 16(10):3688-3703.
Date published:
October 6, 2017
Featured in this article:
Jay Thelen.
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Gα and regulator of G-protein signaling (RGS) protein pairs maintain functional compatibility and conserved interaction interfaces throughout evolution despite frequent loss of RGS proteins in plants. Hackenberg D, McKain MR, Lee SG, Roy Choudhury S, McCann T, Schreier S, Harkess A, Pires JC, Wong GK-S, Jez JM, Kellogg EA, Pandey S. New Phytologist; 216(2):562-575.
Date published:
October 1, 2017
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.
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Effect of recombinant bovine somatotropin on leukocyte mRNA expression for genes related to cell energy metabolism, cytokine production, phagocytosis, oxidative burst, and adaptive immunity. Silva PRB, Nelson CD, Driver JP, Thatcher WW, Chebel RC. Journal of Dairy Science; 100(10):8471-8483.
Date published:
October 1, 2017
Featured in this article:
John Driver.
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A Fluorescent Split Aptamer for Visualizing RNA-RNA Assembly in Vivo. Alam KK, Tawiah KD, Lichte MF, Porciani D, Burke DH. ACS Synthetic Biology; 6(9):1710-1721.
Date published:
September 15, 2017
Featured in this article:
Donald Burke-Agüero.
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Toward the selection of cell targeting aptamers with extended biological functionalities to facilitate endosomal escape of cargoes. Tawiah KD, Porciani D, Burke DH. Biomedicines; 5(3):51.
Date published:
September 1, 2017
Featured in this article:
Donald Burke-Agüero.
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Astrocyte-produced miR-146a as a mediator of motor neuron loss in spinal muscular atrophy. Sison SL, Patitucci TN, Seminary ER, Villalon E, Lorson CL, Ebert AD. Human Molecular Genetics; 26(17):3409-3420.
Date published:
September 1, 2017
Featured in this article:
Christian Lorson.
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Host and pathogen copper-transporting P-type ATPases function antagonistically during Salmonella infection. Ladomersky E, Khan A, Shanbhag V, Cavet JS, Chan J, Weisman GA, Petris MJ. Infection and Immunity; 85(9):e00351-17.
Date published:
September 1, 2017
Featured in this article:
Gary Weisman,
Michael Petris.
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Subgenome dominance in an interspecific hybrid, synthetic allopolyploid, and a 140-year-old naturally established neo-allopolyploid monkeyflower. Edger PP, Smith R, McKain MR, Cooley AM, Vallejo-Marin M, Yuan Y, Bewick AJ, Ji L, Platts AE, Bowman MJ, Childs KL, Washburn JD, Schmitz RJ, Smith GD, Pires JC, Puzey JR. Plant Cell; 29(9):2150-2167.
Date published:
September 1, 2017
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A Resource of Genome-Wide Single Nucleotide Polymorphisms (Snps) for the Conservation and Management of Golden Eagles. Van Den Bussche RA, Judkins ME, Montague MJ, Warren WC. Journal of Raptor Research; 51(3):368-377.
Date published:
September 1, 2017
Featured in this article:
Wes Warren.
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Gene expression in Leishmania is regulated predominantly by gene dosage. Iantorno SA, Durrant C, Khan A, Sanders MJ, Beverley SM, Warren WC, Berriman M, Sacks DL, Cotton JA, Grigg ME. mBio; 8(5):e01393-17.
Date published:
September 1, 2017
Featured in this article:
Wes Warren.
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PzTAC and PzLAZY from a narrow-crown poplar contribute to regulation of branch angles. Xu D, Qi X, Li J, Han X, Wang J, Jiang Y, Tian Y, Wang Y. Plant Physiology and Biochemistry; 118:571.
Date published:
September 1, 2017
Featured in this article:
Dong Xu.
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Translational genomics of grain size regulation in wheat. Li W, Yang B. Theoretical and Applied Genetics; 130(9):1765-1771.
Date published:
September 1, 2017
Featured in this article:
Bing Yang.
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Analysis of Azithromycin Monohydrate as a Single or a Combinatorial Therapy in a Mouse Model of Severe Spinal Muscular Atrophy. Osman EY, Washington CW, Simon ME, Megiddo D, Greif H, Lorson CL. Journal of Neuromuscular Diseases; 4(3):237-249.
Date published:
August 29, 2017
Featured in this article:
Christian Lorson.
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Molecular resources from transcriptomes in the brassicaceae family. Lopez L, Wolf EM, Pires JC, Edger PP, Koch MA. Frontiers in Plant Science; 8:1488.
Date published:
August 29, 2017
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Corrigendum: Whole genome analysis of a schistosomiasis-transmitting freshwater snail. Adema CM, Hillier LW, Jones CS, Loker ES, Knight M, Minx P, Oliveira G, Raghavan N, Shedlock A, Do Amaral LR, Arican-Goktas HD, Assis JG, Baba EH, Baron OL, Bayne CJ, Bickham-Wright U, Biggar KK, Blouin M, Bonning BC, Botka C, Bridger JM, Buckley KM, Buddenborg SK, Lima Caldeira R, Carleton J, Carvalho OS, Castillo MG, Chalmers IW, Christensens M, Clifton S, Cosseau C, Coustau C, Cripps RM, Cuesta-Astroz Y, Cummins SF, DI Stephano L, DInguirard N, Duval D, Emrich S, Feschotte C, Feyereisen R, Fitzgerald P, Fronick C, Fulton L, Galinier R, Gava SG, Geusz M, Geyer KK, Giraldo-Calderón GI, De Souza Gomes M, Gordy MA, Gourbal B, Grunau C, Hanington PC, Hoffmann KF, Hughes D, Humphries J, Jackson DJ, Jannotti-Passos LK, De Jesus Jeremias W, Jobling S, Kamel B, Kapusta A, Kaur S, Koene JM, Kohn AB, Lawson D, Lawton SP, Liang D, Limpanont Y, Liu S, Lockyer AE, Lovato TL, Ludolf F, Magrini V, McManus DP, Medina M, Misra M, Mitta G, Mkoji GM, Montague MJ, Montelongo C, Moroz LL, Munoz-Torres MC, Niazi U, Noble LR, Oliveira FS, Pais FS, Papenfuss AT, Peace R, Pena JJ, Pila EA, Quelais T, Raney BJ, Rast JP, Rollinson D, Rosse IC, Rotgans B, Routledge EJ, Ryan KM, Scholte LLS, Storey KB, Swain M, Tennessen JA, Tomlinson C, Trujillo DL, Volpi EV, Walker AJ, Wang T, Wannaporn I, Warren WC, Wu X-J, Yoshino TP, Yusuf M, Zhang S-M, Zhao M, Wilson RK. Nature Communications; 8:16153.
Date published:
August 23, 2017
Featured in this article:
Wes Warren.
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Genetic dissection of Arabidopsis MAP kinase phosphatase 1-dependent PAMP-induced transcriptional responses. Jiang L, Wan Y, Anderson JC, Hou J, Islam SM, Cheng J, Peck SC. Journal of Experimental Botany; 68(18):5207-5220.
Date published:
August 15, 2017
Featured in this article:
Scott Peck.
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Comparative proteomic analysis provides insight into the biological role of protein phosphatase inhibitor-2 from Arabidopsis. Ahsan N, Chen M, Salvato F, Wilson RS, Shyama Prasad Rao R, Thelen JJ. Journal of Proteomics; 165:51-60.
Date published:
August 8, 2017
Featured in this article:
Jay Thelen.
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The GmFWL1 (FW2-2-like) nodulation gene encodes a plasma membrane microdomain-associated protein. Qiao Z, Brechenmacher L, Smith B, Strout GW, Mangin W, Taylor C, Russell SD, Stacey G, Libault M. Plant Cell and Environment; 40(8):1442-1455.
Date published:
August 1, 2017
Featured in this article:
Gary Stacey.
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Molecular genetic analysis of the melanoma regulatory locus in Xiphophorus interspecies hybrids. Lu Y, Boswell M, Boswell W, Kneitz S, Hausmann M, Klotz B, Regneri J, Savage M, Amores A, Postlethwait J, Warren W, Schartl M, Walter R. Molecular Carcinogenesis; 56(8):1935-1944.
Date published:
August 1, 2017
Featured in this article:
Wes Warren.
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Complexities of gene expression patterns in natural populations of an extremophile fish (Poecilia mexicana, Poeciliidae). Passow CN, Brown AP, Arias-Rodriguez L, Yee M-C, Sockell A, Schartl M, Warren WC, Bustamante C, Kelley JL, Tobler M. Molecular Ecology; 26(16):4211-4225.
Date published:
August 1, 2017
Featured in this article:
Wes Warren.
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New variants of CRISPR RNA-guided genome editing enzymes. Myrovec J, Pirc Ž, Yang B. Plant Biotechnology Journal; 15(8):917-926.
Date published:
August 1, 2017
Featured in this article:
Bing Yang.
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The practical use of genome sequencing data in the management of a feline colony pedigree. Farias FHG, Tomlinson C, Labuda J, Perez-Camargo G, Middleton R, Warren WC. BMC Veterinary Research; 13(1):225.
Date published:
July 27, 2017
Featured in this article:
Wes Warren.
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Anatolian origins and diversification of aethionema, the sister lineage of the core brassicaceae. Mohammadin S, Peterse K, van de Kerke SJ, Chatrou LW, Dönmez AA, Mummenhoff K, Pires JC, Edger PP, Al-Shehbaz IA, Schranz ME. American Journal of Botany; 104(7):1042-1054.
Date published:
July 25, 2017
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Quadrupling efficiency in production of genetically modified pigs through improved oocyte maturation. Yuan Y, Spate LD, Redel BK, Tian Y, Zhou J, Prather RS, Roberts RM. Proceedings of the National Academy of Sciences of the United States of America; 114(29):E5796-E5804.
Date published:
July 18, 2017
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.
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Sphingosine 1-phosphate lyase enhances the activation of IKK to promote type i IFN-mediated innate immune responses to influenza a virus infection. Vijayan M, Xia C, Song YE, Ngo H, Studstill CJ, Drews K, Fox TE, Johnson MC, Hiscott J, Kester M, Alexander S, Hahm B. Journal of Immunology; 199(2):677-687.
Date published:
July 15, 2017
Featured in this article:
Marc Johnson.
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Differential Effects of Prior Influenza Exposures on H3N2 Cross-reactivity of Human Postvaccination Sera. Xie H, Li L, Ye Z, Li X, Plant EP, Zoueva O, Zhao Y, Jing X, Lin Z, Kawano T, Chiang M-J, Finch CL, Kosikova M, Zhang A, Zhu Y, Wan X-F. Clinical Infectious Diseases; 65(2):259-267.
Date published:
July 15, 2017
Featured in this article:
XiuFeng “Henry” Wan.
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A role for the ATP7A copper transporter in tumorigenesis and cisplatin resistance. Zhu S, Shanbhag V, Wang Y, Lee J, Petris M. Journal of Cancer; 8(11):1952-1958.
Date published:
July 5, 2017
Featured in this article:
Michael Petris.
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Regulation of inflammation by lipid mediators in oral diseases. Sommakia S, Baker OJ. Oral Diseases; 23(5):576-597.
Date published:
July 1, 2017
Featured in this article:
Olga Baker.
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L1 Peptide-Conjugated Fibrin Hydrogels Promote Salivary Gland Regeneration. Nam K, Wang C-S, Maruyama CLM, Lei P, Andreadis ST, Baker OJ. Journal of Dental Research; 96(7):798-806.
Date published:
July 1, 2017
Featured in this article:
Olga Baker.
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Foundational and translational research opportunities to improve plant health. Michelmore R, Coaker G, Bart R, Beattie G, Bent A, Bruce T, Cameron D, Dangl J, Dinesh-Kumar S, Edwards R, Eves-Van Den Akker S, Gassmann W, Greenberg JT, Hanley-Bowdoin L, Harrison RJ, He P, Harvey J, Huffaker A, Hulbert S, Innes R, Jones JDG, Kaloshian I, Kamoun S, Katagiri F, Leach J, Ma W, McDowell J, Medford J, Meyers B, Nelson R, Oliver R, Qi Y, Saunders D, Shaw M, Smart C, Subudhi P, Torrance L, Tyler B, Valent B, Walsh J. Molecular Plant-Microbe Interactions; 30(7):515-516.
Date published:
July 1, 2017
Featured in this article:
Walter Gassmann.
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Genomic inferences of domestication events are corroborated by written records in Brassica rapa. Qi X, An H, Ragsdale AP, Hall TE, Gutenkunst RN, Chris Pires J, Barker MS. Molecular Ecology; 26(13):3373-3388.
Date published:
July 1, 2017
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Laser-ablation electrospray ionization mass spectrometry with ion mobility separation reveals metabolites in the symbiotic interactions of soybean roots and rhizobia. Stopka SA, Agtuca BJ, Koppenaal DW, Paša-Tolić L, Stacey G, Vertes A, Anderton CR. Plant Journal; 91(2):340-354.
Date published:
July 1, 2017
Featured in this article:
Gary Stacey.
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Medicago truncatula Oleanolic-Derived Saponins Are Correlated with Caterpillar Deterrence. Cai F, Watson BS, Meek D, Huhman DV, Wherritt DJ, Ben C, Gentzbittel L, Driscoll BT, Sumner LW, Bede JC. Journal of Chemical Ecology; 43(7):712-724.
Date published:
July 1, 2017
Featured in this article:
Lloyd Sumner.
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BioJava-ModFinder: Identification of protein modifications in 3D structures from the Protein Data Bank. Gao J, Prlić A, Bi C, Bluhm WF, Dlmitropoulos D, Xu D, Bourne PE, Rose PW. Bioinformatics; 33(13):2047-2049.
Date published:
July 1, 2017
Featured in this article:
Dong Xu.
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Overfitting reduction of text classification based on AdaBELM. Feng X, Liang Y, Shi X, Xu D, Wang X, Guan R. Entropy; 19(7):330.
Date published:
July 1, 2017
Featured in this article:
Dong Xu.
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Diurnal cycling of rhizosphere bacterial communities is associated with shifts in carbon metabolism. Staley C, Ferrieri AP, Tfaily MM, Cui Y, Chu RK, Wang P, Shaw JB, Ansong CK, Brewer H, Norbeck AD, Markillie M, do Amaral F, Tuleski T, Pellizzaro T, Agtuca B, Ferrieri R, Tringe SG, Paša-Tolić L, Stacey G, Sadowsky MJ. Microbiome; 5(1):65.
Date published:
June 24, 2017
Featured in this article:
Gary Stacey.
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Corrigendum: A proteinaceous organic matrix regulates carbonate mineral production in the marine teleost intestine. Schauer KL, Lemoine CMR, Pelin A, Corradi N, Warren WC, Grosell M. Scientific Reports; 7:46844.
Date published:
June 19, 2017
Featured in this article:
Wes Warren.
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In-situ, real-time monitoring of nutrient uptake on plant chip integrated with nutrient sensor. Jiang H, Ali MA, Jiao Y, Yang B, Dong L. TRANSDUCERS 2017 - 19th International Conference on Solid-State Sensors, Actuators and Microsystems; 289-292.
Date published:
June 18, 2017
Featured in this article:
Bing Yang.
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Discovery of a Small Molecule Probe That Post-Translationally Stabilizes the Survival Motor Neuron Protein for the Treatment of Spinal Muscular Atrophy. Rietz A, Li H, Quist KM, Cherry JJ, Lorson CL, Burnett BG, Kern NL, Calder AN, Fritsche M, Lusic H, Boaler PJ, Choi S, Xing X, Glicksman MA, Cuny GD, Androphy EJ, Hodgetts KJ. Journal of Medicinal Chemistry; 60(11):4594-4610.
Date published:
June 8, 2017
Featured in this article:
Christian Lorson.
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RNA-protein interactions govern antiviral specificity and encapsidation of broad spectrum anti-HIV reverse transcriptase aptamers. Lange MJ, Nguyen PDM, Callaway MK, Johnson MC, Burke DH. Nucleic Acids Research; 45(10):6087-6097.
Date published:
June 2, 2017
Featured in this article:
Marc Johnson,
Donald Burke-Agüero.
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Reactive oxygen species, abiotic stress and stress combination. Choudhury FK, Rivero RM, Blumwald E, Mittler R. Plant Journal; 90(5):856-867.
Date published:
June 1, 2017
Featured in this article:
Ron Mittler.
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Insights into the evolution of hydroxyproline-rich glycoproteins from 1000 plant transcriptomes. Johnson KL, Cassin AM, Lonsdale A, Wong GK-S, Soltis DE, Miles NW, Melkonian M, Melkonian B, Deyholos MK, Leebens-Mack J, Rothfels CJ, Stevenson DW, Graham SW, Wang X, Wu S, Pires JC, Edger PP, Carpenter EJ, Bacic A, Doblin MS, Schultz CJ. Plant Physiology; 174(2):904-921.
Date published:
June 1, 2017
Featured in this article:
.
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3-hydroxypyrimidine-2,4-diones as novel hepatitis b virus antivirals targeting the viral ribonuclease H. Huber AD, Michailidis E, Tang J, Puray-Chavez MN, Boftsi M, Wolf JJ, Boschert KN, Sheridan MA, Leslie MD, Kirby KA, Singh K, Mitsuya H, Parniak MA, Wang Z, Sarafianos SG. Antimicrobial Agents and Chemotherapy; 61(6):e00245-17.
Date published:
June 1, 2017
Featured in this article:
Kamlendra Singh.
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The oil-contaminated soil diazotroph Azoarcus olearius DQS-4ᵀ is genetically and phenotypically similar to the model grass endophyte Azoarcus sp. BH72. Faoro H, Rene Menegazzo R, Battistoni F, Gyaneshwar, do Amaral FP, Taulé C, Rausch S, Gonçalves Galvão P, de los Santos C, Mitra S, Heijo G, Sheu S-Y, Chen W-M, Marwque C, Zibetti Tadra-Sfeir M, Ivo Baldani J, Maluk M, Paula Guimarães A, Stacey G, de Souza EM, Pedrosa FO, Magalhães Cruz L, James EK. Environmental Microbiology Reports; 9(3):223-238.
Date published:
June 1, 2017
Featured in this article:
Gary Stacey.
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Arabidopsis E3 ubiquitin ligase PLANT U-BOX13 (PUB13) regulates chitin receptor LYSIN MOTIF RECEPTOR KINASE5 (LYK5) protein abundance. Liao D, Cao Y, Sun X, Espinoza C, Nguyen CT, Liang Y, Stacey G. New Phytologist; 214(4):1646-1656.
Date published:
June 1, 2017
Featured in this article:
Gary Stacey.
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Genetic dissection of the maize (Zea mays L.) MAMP response. Zhang X, Valdés-López O, Arellano, Stacey G, Balint-Kurti P. Theoretical and Applied Genetics; 130(6):1155-1168.
Date published:
June 1, 2017
Featured in this article:
Gary Stacey.
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The Cyprinodon variegatus genome reveals gene expression changes underlying differences in skull morphology among closely related species. Lencer ES, Warren WC, Harrison R, McCune AR. BMC Genomics; 18(1):424.
Date published:
May 30, 2017
Featured in this article:
Wes Warren.
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Whole genome analysis of a schistosomiasis-transmitting freshwater snail. Adema CM, Hillier LW, Jones CS, Loker ES, Knight M, Minx P, Oliveira G, Raghavan N, Shedlock A, Do Amaral LR, Arican-Goktas HD, Assis JG, Baba EH, Baron OL, Bayne CJ, Bickham-Wright U, Biggar KK, Blouin M, Bonning BC, Botka C, Bridger JM, Buckley KM, Buddenborg SK, Lima Caldeira R, Carleton J, Carvalho OS, Castillo MG, Chalmers IW, Christensens M, Clifton S, Cosseau C, Coustau C, Cripps RM, Cuesta-Astroz Y, Cummins SF, DI Stephano L, DInguirard N, Duval D, Emrich S, Feschotte C, Feyereisen R, Fitzgerald P, Fronick C, Fulton L, Galinier R, Gava SG, Geusz M, Geyer KK, Giraldo-Calderón GI, De Souza Gomes M, Gordy MA, Gourbal B, Grunau C, Hanington PC, Hoffmann KF, Hughes D, Humphries J, Jackson DJ, Jannotti-Passos LK, De Jesus Jeremias W, Jobling S, Kamel B, Kapusta A, Kaur S, Koene JM, Kohn AB, Lawson D, Lawton SP, Liang D, Limpanont Y, Liu S, Lockyer AE, Lovato TL, Ludolf F, Magrini V, McManus DP, Medina M, Misra M, Mitta G, Mkoji GM, Montague MJ, Montelongo C, Moroz LL, Munoz-Torres MC, Niazi U, Noble LR, Oliveira FS, Pais FS, Papenfuss AT, Peace R, Pena JJ, Pila EA, Quelais T, Raney BJ, Rast JP, Rollinson D, Rosse IC, Rotgans B, Routledge EJ, Ryan KM, Scholte LLS, Storey KB, Swain M, Tennessen JA, Tomlinson C, Trujillo DL, Volpi EV, Walker AJ, Wang T, Wannaporn I, Warren WC, Wu X-J, Yoshino TP, Yusuf M, Zhang S-M, Zhao M, Wilson RK. Nature Communications; 8:15451.
Date published:
May 16, 2017
Featured in this article:
Wes Warren.
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Quantitative proteomics analysis of leaves from two Sedum alfredii (Crassulaceae) populations that differ in cadmium accumulation. Zhang Z, Zhou H, Yu Q, Li Y, Mendoza-Cózatl DG, Qiu B, Liu P, Chen Q. Proteomics; 17(10):1600456.
Date published:
May 1, 2017
Featured in this article:
David Mendoza-Cózatl.
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Orchestrating rapid long-distance signaling in plants with Ca2+, ROS and electrical signals. Choi W-G, Miller G, Wallace I, Harper J, Mittler R, Gilroy S. Plant Journal; 90(4):698-707.
Date published:
May 1, 2017
Featured in this article:
Ron Mittler.
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Water-deficit-induced changes in transcription factor expression in maize seedlings. Seeve CM, Cho I-J, Hearne LB, Srivastava GP, Joshi T, Smith DO, Sharp RE, Oliver MJ. Plant Cell and Environment; 40(5):686-701.
Date published:
May 1, 2017
Featured in this article:
Trupti Joshi.
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Molecular and functional bases of selection against a mutation bias in an RNA virus. De La Higuera I, Ferrer-Octa C, De Ávila AI, Perales C, Sierra M, Singh K, Sarafianos SG, Dehouck Y, Bastolla U, Verdaguer N, Domingo E. Genome Biology and Evolution; 9(5):1212-1228.
Date published:
May 1, 2017
Featured in this article:
Kamlendra Singh.
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Low-pathogenic influenza A viruses in North American diving ducks contribute to the emergence of a novel highly pathogenic influenza A(H7N8) virus. Xu Y, Ramey AM, Bowman AS, DeLiberto TJ, Killian ML, Krauss S, Nolting JM, Torchetti MK, Reeves AB, Webby RJ, Stallknecht DE, Wan X-F. Journal of Virology; 91(9):e02208-16.
Date published:
May 1, 2017
Featured in this article:
XiuFeng “Henry” Wan.
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Discovery and genotyping of structural variation from long-read haploid genome sequence data. Huddleston J, Chaisson MJP, Steinberg KM, Warren W, Hoekzema K, Gordon D, Graves-Lindsay TA, Munson KM, Kronenberg ZN, Vives L, Peluso P, Boitano M, Chin C-S, Korlach J, Wilson RK, Eichler EE. Genome Research; 27(5):677-685.
Date published:
May 1, 2017
Featured in this article:
Wes Warren.
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iPhos-PseEvo: Identifying Human Phosphorylated Proteins by Incorporating Evolutionary Information into General PseAAC via Grey System Theory. Qiu W-R, Sun B-Q, Xiao X, Xu D, Chou K-C. Molecular Informatics; 36(5):1600010.
Date published:
May 1, 2017
Featured in this article:
Dong Xu.
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The Role of Plant Innate Immunity in the Legume-Rhizobium Symbiosis. Cao Y, Halane MK, Gassmann W, Stacey G. Annual Review of Plant Biology; 68:535-561.
Date published:
April 28, 2017
Featured in this article:
Walter Gassmann,
Gary Stacey.
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Understanding the Phosphorylation Mechanism by Using Quantum Chemical Calculations and Molecular Dynamics Simulations. Han W, Zhu J, Wang S, Xu D. Journal of Physical Chemistry B; 121(15):3565-3573.
Date published:
April 20, 2017
Featured in this article:
Dong Xu.
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Pathogenicity and transmission of a swine influenza A(H6N6) virus. Sun H, Kaplan BS, Guan M, Zhang G, Ye J, Long L-P, Blackmon S, Yang C-K, Chiang M-J, Xie H, Zhao N, Cooley J, Smith DF, Liao M, Cardona C, Li L, Wang GP, Webby R, Wan X-F. Emerging Microbes and Infections; 6(4):e17.
Date published:
April 12, 2017
Featured in this article:
XiuFeng “Henry” Wan.
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Interactions between mito NEET and NAF-1 in cells. Karmi O, Holt SH, Song L, Tamir S, Luo Y, Bai F, Adenwalla A, Darash-Yahana M, Sohn Y-S, Jennings PA, Azad RK, Onuchic JN, Morcos F, Nechushtai R, Mittler R. PLoS ONE; 12(4):e0175796.
Date published:
April 1, 2017
Featured in this article:
Ron Mittler.
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Divergent cytosine DNA methylation patterns in single-cell, soybean root hairs. Hossain MS, Kawakatsu T, Kim KD, Zhang N, Nguyen CT, Khan SM, Batek JM, Joshi T, Schmutz J, Grimwood J, Schmitz RJ, Xu D, Jackson SA, Ecker JR, Stacey G. New Phytologist; 214(2):808-819.
Date published:
April 1, 2017
Featured in this article:
Trupti Joshi,
Dong Xu,
Gary Stacey.
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Detection of antigenic variants of subtype H3 swine influenza A viruses from clinical samples. Martin BE, Bowman AS, Li L, Nolting JM, Smith DR, Hanson LA, Wan X-F. Journal of Clinical Microbiology; 55(4):1037-1045.
Date published:
April 1, 2017
Featured in this article:
XiuFeng “Henry” Wan.
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AT-RvD1 Promotes Resolution of Inflammation in NOD/ShiLtJ mice. Wang C-S, Maruyama CL, Easley JT, Trump BG, Baker OJ. Scientific Reports; 7:45525.
Date published:
March 31, 2017
Featured in this article:
Olga Baker.
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The interactome of the copper transporter ATP7A belongs to a network of neurodevelopmental and neurodegeneration factors. Comstra HS, McArthy J, Rudin-Rush S, Hartwig C, Gokhale A, Zlatic SA, Blackburn JB, Werner E, Petris M, D’Souza P, Panuwet P, Barr DB, Lupashin V, Vrailas-Mortimer A, Faundez V. eLife; 6:e24722.
Date published:
March 29, 2017
Featured in this article:
Michael Petris.
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Early-Onset Progressive Retinal Atrophy Associated with an IQCB1 Variant in African Black-Footed Cats (Felis nigripes). Oh A, Pearce JW, Gandolfi B, Creighton EK, Suedmeyer WK, Selig M, Bosiack AP, Castaner LJ, Whiting REH, Belknap EB, Lyons LA, Aderdein D, Alves PC, Barsh GS, Beale HC, Boyko AR, Castelhano MG, Chan P, Ellinwood NM, Garrick DJ, Helps CR, Kaelin CB, Leeb T, Lohi H, Longeri M, Malik R, Montague MJ, Munday JS, Murphy WJ, Pedersen NC, Rothschild MF, Swanson WF, Terio KA, Todhunter RJ, Warren WC. Scientific Reports; 7:43918.
Date published:
March 21, 2017
Featured in this article:
Wes Warren.
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Selective Inactivation of Functional RNAs by Ribozyme-Catalyzed Covalent Modification. Poudyal RR, Benslimane M, Lokugamage MP, Callaway MK, Staller S, Burke DH. ACS Synthetic Biology; 6(3):528-534.
Date published:
March 17, 2017
Featured in this article:
Donald Burke-Agüero.
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Corrigendum: HIPSTR and thousands of lncRNAs are heterogeneously expressed in human embryos, primordial germ cells and stable cell lines. Yunusov D, Anderson L, DaSilva LF, Wysocka J, Ezashi T, Roberts RM, Verjovski-Almeida S. Scientific Reports; 7:44632.
Date published:
March 16, 2017
Featured in this article:
.
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Population structure and phylogenetic relationships in a diverse panel of Brassica rapa L. Bird KA, An H, Gazave E, Gore MA, Pires JC, Robertson LD, Labate JA. Frontiers in Plant Science; 8:321.
Date published:
March 13, 2017
Featured in this article:
.
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Small molecule inhibitors block Gas6-inducible TAM activation and tumorigenicity. Kimani SG, Kumar S, Bansal N, Singh K, Kholodovych V, Comollo T, Peng Y, Kotenko SV, Sarafianos SG, Bertino JR, Welsh WJ, Birge RB. Scientific Reports; 7:43908.
Date published:
March 8, 2017
Featured in this article:
Kamlendra Singh.
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Three-dimensional cultures of mouse submandibular and parotid glands: a comparative study. Leigh, N.J.a, Nelson, J.W.a, Mellas, R.E.a, McCall, A.D.b, Baker, O.J. Journal of Tissue Engineering and Regenerative Medicine; 11(3):618-626.
Date published:
March 1, 2017
Featured in this article:
Olga Baker.
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Methods for observing and quantifying muscle satellite cell motility and invasion in vitro. Lund DK, McAnulty P, Siegel AL, Cornelison D. Methods in Molecular Biology; 1556:303-315.
Date published:
March 1, 2017
Featured in this article:
D Cornelison.
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Muscle stem cells: A model system for adult stem cell biology. Cornelison DDW, Perdiguero E. Methods in Molecular Biology; 1556:3-19.
Date published:
March 1, 2017
Featured in this article:
D Cornelison.
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Comparison of independent screens on differentially vulnerable motor neurons reveals alpha-synuclein as a common modifier in motor neuron diseases. Kline RA, Kaifer KA, Osman EY, Carella F, Tiberi A, Ross J, Pennetta G, Lorson CL, Murray LM. PLoS Genetics; 13(3):e1006680.
Date published:
March 1, 2017
Featured in this article:
Christian Lorson.
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SMN deficiency negatively impacts red pulp macrophages and spleen development in mouse models of spinal muscular atrophy. Khairallah M-T, Astroski J, Custer SK, Androphy EJ, Franklin CL, Lorson CL. Human Molecular Genetics; 26(5):932-941.
Date published:
March 1, 2017
Featured in this article:
Christian Lorson.
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Chitin receptor CERK1 links salt stress and chitin-triggered innate immunity in Arabidopsis. Espinoza C, Liang Y, Stacey G. Plant Journal; 89(5):984-995.
Date published:
March 1, 2017
Featured in this article:
Gary Stacey.
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Fluorescence In Situ Hybridization for Glycine max Metaphase Chromosomes. Findley SD, Birchler JA, Stacey G. Current protocols in plant biology; 2(1):89-107.
Date published:
March 1, 2017
Featured in this article:
Gary Stacey.
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Metaphase Chromosome Preparation from Soybean (Glycine max) Root Tips. Findley SD, Birchler JA, Stacey G. Current protocols in plant biology; 2(1):78-88.
Date published:
March 1, 2017
Featured in this article:
Gary Stacey.
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The proteome of higher plant mitochondria. Rao RSP, Salvato F, Thal B, Eubel H, Thelen JJ, Møller IM. Mitochondrion; 33:22-37.
Date published:
March 1, 2017
Featured in this article:
Jay Thelen.
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Editorial. Møller IM, Thelen JJ. Mitochondrion; 33:1.
Date published:
March 1, 2017
Featured in this article:
Jay Thelen.
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Avian W and mammalian y chromosomes convergently retained dosage-sensitive regulators. Bellott DW, Skaletsky H, Cho T-J, Brown L, Locke D, Chen N, Galkina S, Pyntikova T, Koutseva N, Graves T, Kremitzki C, Warren WC, Clark AG, Gaginskaya E, Wilson RK, Page DC. Nature Genetics; 49(3):387-394.
Date published:
March 1, 2017
Featured in this article:
Wes Warren.
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Building and Improving Reference Genome Assemblies: This paper reviews the problems and algorithms of assembling a complete genome from millions of short DNA sequencing reads. Meltz Steinberg K, Schneider VA, Alkan C, Montague MJ, Warren WC, Church DM, Wilson RK. Proceedings of the IEEE; 105(3):422-435.
Date published:
March 1, 2017
Featured in this article:
Wes Warren.
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Precision Medicine in Cats: Novel Niemann-Pick Type C1 Diagnosed by Whole-Genome Sequencing. Mauler DA, Gandolfi B, Reinero CR, O'Brien DP, Spooner JL, Lyons LA, Aberdein D, Alves PC, Barsh GS, Beale HC, Boyko AR, Brockman JA, Castelhano MG, Chan PP, Matthew Ellinwood N, Fogle JE, Garrick DJ, Helps CR, Hytönen MK, Kaukonen M, Kaelin CB, Leclerc E, Leeb T, Lohi H, Longeri M, Malik R, Montague MJ, Munday JS, Murphy WJ, Pedersen NC, Rothschild MF, Stern JA, Swanson WF, Terio KA, Todhunter RJ, Ueda Y, Warren WC, Wilcox EA, Wildschutte JH. Journal of Veterinary Internal Medicine; 31(2):539-544.
Date published:
March 1, 2017
Featured in this article:
Wes Warren.
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The landscape of extreme genomic variation in the highly adaptable Atlantic killifish. Reid NM, Jackson CE, Gilbert D, Minx P, Montague MJ, Hampton TH, Helfrich LW, King BL, Nacci DE, Aluru N, Karchner SI, Colbourne JK, Hahn ME, Shaw JR, Oleksiak MF, Crawford DL, Warren WC, Whitehead A. Genome Biology and Evolution; 9(3):659-676.
Date published:
March 1, 2017
Featured in this article:
Wes Warren.
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OMPcontact: An Outer Membrane Protein Inter-Barrel Residue Contact Prediction Method. Zhang L, Wang H, Yan L, Su L, Xu D. Journal of Computational Biology; 24(3):217-228.
Date published:
March 1, 2017
Featured in this article:
Dong Xu.
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Interferon-γ limits diabetogenic CD8⁺ T-cell effector responses in type 1 diabetes. Driver JP, Racine JJ, Ye C, Lamont DJ, Newby BN, Leeth CM, Chapman HD, Brusko TM, Chen Y-G, Mathews CE, Serreze DV. Diabetes; 66(3):710-721.
Date published:
March 1, 2017
Featured in this article:
John Driver.
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Vulnerability of primitive human placental trophoblast to Zika virus. Sheridan MA, Yunusov D, Balaraman V, Alexenko AP, Yabe S, Verjovski-Almeida S, Schust DJ, Franz AW, Sadovsky Y, Ezashi T, Roberts RM. Proceedings of the National Academy of Sciences of the United States of America; 114(9):E1587-E1596.
Date published:
February 28, 2017
Featured in this article:
.
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Current cell models for bioengineering salivary glands. Baker, OJ. Salivary Gland Development and Regeneration: Advances in Research and Clinical Approaches to Functional Restoration; 133-144.
Date published:
February 20, 2017
Featured in this article:
Olga Baker.
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Nucleobase modification by an RNA enzyme. Poudyal RR, Nguyen PDM, Lokugamage MP, Callaway MK, Gavette JV, Krishnamurthy R, Burke DH. Nucleic Acids Research; 45(3):1345-1354.
Date published:
February 17, 2017
Featured in this article:
Donald Burke-Agüero.
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Phylogenetic analysis of eukaryotic NEET proteins uncovers a link between a key gene duplication event and the evolution of vertebrates. Inupakutika MA, Sengupta S, Nechushtai R, Jennings PA, Onuchic JN, Azad RK, Padilla P, Mittler R. Scientific Reports; 7:42571.
Date published:
February 16, 2017
Featured in this article:
Ron Mittler.
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HA triggers the switch from MEK1 SUMOylation to phosphorylation of the ERK pathway in influenza A virus-infected cells and facilitates its infection. Wang C, Liu H, Luo J, Chen L, Li M, Su W, Zhao N, Liu S, Xie L, Jia Y, Ding H, Wan X, He H. Frontiers in Cellular and Infection Microbiology; 7(FEB):27.
Date published:
February 7, 2017
Featured in this article:
XiuFeng “Henry” Wan.
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Enhanced Development of Skeletal Myotubes from Porcine Induced Pluripotent Stem Cells. Genovese NJ, Domeier TL, Telugu BPVL, Roberts RM. Scientific Reports; 7:41833.
Date published:
February 6, 2017
Featured in this article:
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BFDCA: A Comprehensive Tool of Using Bayes Factor for Differential Co-Expression Analysis. Wang D, Wang J, Jiang Y, Liang Y, Xu D. Journal of Molecular Biology; 429(3):446-453.
Date published:
February 3, 2017
Featured in this article:
Dong Xu.
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Muscle spindle alterations precede onset of sensorimotor deficits in Charcot–Marie–Tooth type 2E. Villalón E, Jones MR, Sibigtroth C, Zino SJ, Dale JM, Landayan DS, Shen H, Cornelison DDW, Garcia ML. Genes, Brain and Behavior; 16(2):260-270.
Date published:
February 1, 2017
Featured in this article:
D Cornelison.
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Evidence for the involvement of electrical, calcium and ROS signaling in the systemic regulation of non-photochemical quenching and photosynthesis. Białasek M, Górecka M, Mittler R, Karpiński S. Plant and Cell Physiology; 58(2):207-215.
Date published:
February 1, 2017
Featured in this article:
Ron Mittler.
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A FAS-ligand variant associated with autoimmune lymphoproliferative syndrome in cats. Aberdein D, Munday JS, Gandolfi B, Dittmer KE, Malik R, Garrick DJ, Lyons LA, 99 Lives Consortium, Alves PC, Barsh GS, Beale HC, Boyko AR, Castelhano MG, Chan P, Ellinwood NM, Helps CR, Kaelin CB, Leeb T, Lohi H, Longeri M, Montague MJ, Murphy WJ, Pedersen NC, Rothschild MF, Swanson WF, Terio KA, Todhunter RJ, Warren WC. Mammalian Genome; 28(1-2):47-55.
Date published:
February 1, 2017
Featured in this article:
Wes Warren.
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P2Y₂ receptor modulates shear stress-induced cell alignment and actin stress fibers in human umbilical vein endothelial cells. Sathanoori R, Bryl-Gorecka P, Müller CE, Erb L, Weisman GA, Olde B, Erlinge D. Cellular and Molecular Life Sciences; 74(4):731-746.
Date published:
February 1, 2017
Featured in this article:
Gary Weisman.
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An Agrobacterium-delivered CRISPR/Cas9 system for high-frequency targeted mutagenesis in maize. Char SN, Neelakandan AK, Nahampun H, Frame B, Main M, Spalding MH, Becraft PW, Meyers BC, Walbot V, Wang K, Yang B. Plant Biotechnology Journal; 15(2):257-268.
Date published:
February 1, 2017
Featured in this article:
Bing Yang.
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Simplified enrichment of plasma membrane proteins from Arabidopsis thaliana seedlings using differential centrifugation and Brij-58 treatment. Collins CA, Leslie ME, Peck SC, Heese A. Methods in Molecular Biology; 1564:155-168.
Date published:
January 26, 2017
Featured in this article:
Scott Peck.
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Gene Therapy for Spinal Muscular Atrophy. Miller MR, Osman EY, Lorson CL. Molecular and Cellular Therapies for Motor Neuron Diseases; 233-250.
Date published:
January 19, 2017
Featured in this article:
Christian Lorson.
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End-to-end security formalization and alignment for federated workflow management. Dickinson M, Debroy S, Calyam P, Valluripally S, Zhang Y, Joshi T, Xu D. IEEE International Conference on Cloud Computing, CLOUD; 59-67.
Date published:
January 17, 2017
Featured in this article:
Trupti Joshi,
Dong Xu.
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Serological evidence for high prevalence of Influenza D Viruses in Cattle, Nebraska, United States, 2003–2004. Luo J, Ferguson L, Smith DR, Woolums AR, Epperson WB, Wan X-F. Virology; 501:88-91.
Date published:
January 15, 2017
Featured in this article:
XiuFeng “Henry” Wan.
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Physiological Mg2+ conditions significantly alter the inhibition of HIV-1 and HIV-2 Reverse transcriptases by nucleoside and non-nucleoside inhibitors in vitro. Achuthan V, Singh K, Destefano JJ. Biochemistry; 56(1):33-46.
Date published:
January 10, 2017
Featured in this article:
Kamlendra Singh.
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Structure of the human monomeric NEET protein MiNT and its role in regulating iron and reactive oxygen species in cancer cells. Lipper CH, Karmi O, Sohn YS, Darash-Yahana M, Lammert H, Song L, Liu A, Mittler R, Nechushtai R, Onuchic JN, Jennings PA. Proceedings of the National Academy of Sciences of the United States of America; 115(2):272-277.
Date published:
January 9, 2017
Featured in this article:
Ron Mittler.
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Network-guided GWAS improves identification of genes affecting free amino acids. Angelovici R, Batushansky A, Deason N, Gonzalez-Jorge S, Gore MA, Fait A, Dellapenna D. Plant Physiology; 173(1):872-886.
Date published:
January 1, 2017
Featured in this article:
Ruthie Angelovici.
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Contributions of Different Cell Types to Spinal Muscular Atrophy Pathogenesis. Deguise MO, Patitucci TN, Ebert AD, Lorson CL, Kothary R. Spinal Muscular Atrophy: Disease Mechanisms and Therapy; 167-181.
Date published:
January 1, 2017
Featured in this article:
Christian Lorson.
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Moderate to severe water limitation differentially affects the phenome and ionome of Arabidopsis. Acosta-Gamboa LM, Liu S, Langley E, Campbell Z, Castro-Guerrero N, Mendoza-Cozatl D, Lorence A. Functional Plant Biology; 44(1):94-106.
Date published:
January 1, 2017
Featured in this article:
David Mendoza-Cózatl.
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ROS Are Good. Mittler R. Trends in Plant Science; 22(1):11-19.
Date published:
January 1, 2017
Featured in this article:
Ron Mittler.
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The evolution of soybean knowledge base (SoyKB). Joshi T, Wang J, Zhang H, Chen S, Zeng S, Xu B, Xu D. Methods in Molecular Biology; 1533:149-159.
Date published:
January 1, 2017
Featured in this article:
Trupti Joshi,
Dong Xu.
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Increased replication capacity following evolution of PYxE insertion in Gag-p6 is associated with enhanced virulence in HIV-1 subtype C from East Africa. Aralaguppe SG, Winner D, Singh K, Sarafianos SG, Quiñones-Mateu ME, Sönnerborg A, Neogi U. Journal of Medical Virology; 89(1):106-111.
Date published:
January 1, 2017
Featured in this article:
Kamlendra Singh.
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A 2-hydroxyisoquinoline-1,3-dione active-site RNase H inhibitor binds in multiple modes to HIV-1 reverse transcriptase. Kirby KA, Myshakina NA, Christen MT, Chen Y-L, Schmidt HA, Huber AD, Xi Z, Kim S, Rao RK, Kramer ST, Yang Q, Singh K, Parniak MA, Wang Z, Ishima R, Sarafianos SG. Antimicrobial Agents and Chemotherapy; 61(10).
Date published:
January 1, 2017
Featured in this article:
Kamlendra Singh.
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Molecular mechanism of plant recognition of extracellular ATP. Cho S-H, Nguyen CT, Choi J, Stacey G. Advances in Experimental Medicine and Biology; 1051:233-253.
Date published:
January 1, 2017
Featured in this article:
Gary Stacey.
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Two SERK receptor-like kinases interact with EMS1 to control anther cell fate determination. Li Z, Wang Y, Huang J, Ahsan N, Biener G, Paprocki J, Thelen JJ, Raicu V, Zhao D. Plant Physiology; 173(1):326-337.
Date published:
January 1, 2017
Featured in this article:
Jay Thelen.
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Feral swine in the United States have been exposed to both avian and swine influenza A viruses. Martin BE, Sun H, Carrel M, Cunningham FL, Baroch JA, Hanson-Dorr KC, Young SG, Schmit B, Nolting JM, Yoon K-J, Lutman MW, Pedersen K, Lager K, Bowman AS, Slemons RD, Smith DR, DeLiberto T, Wan X-F. Applied and Environmental Microbiology; 83(19):e01346-17.
Date published:
January 1, 2017
Featured in this article:
XiuFeng “Henry” Wan.
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Decoding glycan protein interactions by a new class of asymmetric N-glycans. Wu Z, Liu Y, Li L, Wan X-F, Zhu H, Guo Y, Wei M, Guan W, Wang PG. Organic and Biomolecular Chemistry; 15(42):8946-8951.
Date published:
January 1, 2017
Featured in this article:
XiuFeng “Henry” Wan.
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A new chicken genome assembly provides insight into avian genome structure. Warren WC, Hillier LW, Tomlinson C, Minx P, Kremitzki M, Graves T, Markovic C, Bouk N, Pruitt KD, Thibaud-Nissen F, Schneider V, Mansour TA, Brown CT, Zimin A, Hawken R, Abrahamsen M, Pyrkosz AB, Morisson M, Fillon V, Vignal A, Chow W, Howe K, Fulton JE, Miller MM, Lovell P, Mello CV, Wirthlin M, Mason AS, Kuo R, Burt DW, Dodgson JB, Cheng HH. G3: Genes, Genomes, Genetics; 7(1):109-117.
Date published:
January 1, 2017
Featured in this article:
Wes Warren.
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Bioinformatics analysis of protein phosphorylation in plant systems biology using P3DB. Yao Q, Xu D. Methods in Molecular Biology; 1558:127-138.
Date published:
January 1, 2017
Featured in this article:
Dong Xu.
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Tongue Images Classification Based on Constrained High Dispersal Network. Meng D, Cao G, Duan Y, Zhu M, Tu L, Xu D, Xu J. Evidence-based Complementary and Alternative Medicine; 2017:7452427.
Date published:
January 1, 2017
Featured in this article:
Dong Xu.
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Tongue image analysis and its mobile app development for health diagnosis. Kanawong R, Obafemi-Ajayi T, Liu D, Zhang M, Xu D, Duan Y. Advances in Experimental Medicine and Biology; 1005:99-121.
Date published:
January 1, 2017
Featured in this article:
Dong Xu.
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Gene Editing With TALEN and CRISPR/Cas in Rice. Bi H, Yang B. Progress in Molecular Biology and Translational Science; 149:81-98.
Date published:
January 1, 2017
Featured in this article:
Bing Yang.
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Preface. Weeks DP, Yang B. Progress in Molecular Biology and Translational Science; 149:xiii-xiv.
Date published:
January 1, 2017
Featured in this article:
Bing Yang.
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Exploring early differentiation and pluripotency in domestic animals. Roberts RM, Yuan Y, Ezashi T. Reproduction, Fertility and Development; 29(1):101-107.
Date published:
January 1, 2017
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.
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2016
Malonylation of glucosylated N-lauroylethanolamine: A new pathway that determines N-acylethanolamine metabolic fate in plants. Khan BR, Wherritt DJ, Huhman D, Sumner LW, Chapman KD, Blancaflor EB. Journal of Biological Chemistry; 291(53):27112-27121.
Date published:
December 30, 2016
Featured in this article:
Lloyd Sumner.
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A Human Stem Cell Model for Creating Placental Syncytiotrophoblast, the Major Cellular Barrier that Limits Fetal Exposure to Xenobiotics. Michael Roberts R, Yabe S, Yang Y, Ezashi T. Stem Cells in Toxicology and Medicine; 179-195.
Date published:
December 28, 2016
Featured in this article:
.
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Retraction: The SMN structure reveals its crucial role in snRNP assembly [Human Molecular Genetics, 24, 8, 2138-46]doi: 10.1093/hmg/ddu734. Seng CO, Magee C, Young PJ, Lorson CL, Allen JP. Human Molecular Genetics; 25(24):5516.
Date published:
December 15, 2016
Featured in this article:
Christian Lorson.
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Imbalanced multi-label learning for identifying antimicrobial peptides and their functional types. Lin W, Xu D. Bioinformatics; 32(24):3745-3752.
Date published:
December 15, 2016
Featured in this article:
Dong Xu.
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A deep tongue image features analysis model for medical application. Meng D, Cao G, Duan Y, Zhu M, Tu L, Xu J, Xu D. Proceedings - 2016 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2016; 1918-1922.
Date published:
December 15, 2016
Featured in this article:
Dong Xu.
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Classification of tongue images based on doublet and color space dictionary. Cao G, Ding J, Duan Y, Tu L, Xu J, Xu D. Proceedings - 2016 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2016; 1170-1175.
Date published:
December 15, 2016
Featured in this article:
Dong Xu.
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Planar cell polarity signaling in the uterus directs appropriate positioning of the Crypt for Embryo implantation. Yuan J, Cha J, Deng W, Bartos A, Sun X, Ho H-YH, Borg J-P, Yamaguchi TP, Yang Y, Dey SK, Roberts RM. Proceedings of the National Academy of Sciences of the United States of America; 113(50):E8079-E8088.
Date published:
December 13, 2016
Featured in this article:
.
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The genomic landscape of rapid repeated evolutionary adaptation to toxic pollution in wild fish. Reid NM, Proestou DA, Clark BW, Warren WC, Colbourne JK, Shaw JR, Karchner SI, Hahn ME, Nacci D, Oleksiak MF, Crawford DL, Whitehead A. Science; 354(6317):1305-1308.
Date published:
December 9, 2016
Featured in this article:
Wes Warren.
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PlantMAT: A metabolomics tool for predicting the specialized metabolic potential of a system and for large-scale metabolite identifications. Qiu F, Fine DD, Wherritt DJ, Lei Z, Sumner LW. Analytical Chemistry; 88(23):11373-11383.
Date published:
December 6, 2016
Featured in this article:
Lloyd Sumner.
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The Evolution of HD2 Proteins in Green Plants. Bourque S, Jeandroz S, Grandperret V, Lehotai N, Aimé S, Soltis DE, Miles NW, Melkonian M, Deyholos MK, Leebens-Mack JH, Chase MW, Rothfels CJ, Stevenson DW, Graham SW, Wang X, Wu S, Pires JC, Edger PP, Yan Z, Xie Y, Carpenter EJ, Wong GKS, Wendehenne D, Nicolas-Francès V. Trends in Plant Science; 21(12):1008-1016.
Date published:
December 1, 2016
Featured in this article:
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Jasmonate-mediated stomatal closure under elevated CO₂ revealed by time-resolved metabolomics. Geng S, Misra BB, de Armas E, Huhman DV, Alborn HT, Sumner LW, Chen S. Plant Journal; 88(6):947-962.
Date published:
December 1, 2016
Featured in this article:
Lloyd Sumner.
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Rapid control of pandemic H1N1 influenza by targeting NKT-cells. Artiaga BL, Yang G, Hutchinson TE, Loeb JC, Richt JA, Lednicky JA, Salek-Ardakani S, Driver JP. Scientific Reports; 6:37999.
Date published:
November 29, 2016
Featured in this article:
John Driver.
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Robust Yet Fragile: Expression Noise, Protein Misfolding, and Gene Dosage in the Evolution of Genomes. Pires JC, Conant GC. Annual Review of Genetics; 50:113-131.
Date published:
November 23, 2016
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.
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The pangenome of an agronomically important crop plant Brassica oleracea. Golicz AA, Bayer PE, Barker GC, Edger PP, Kim H, Martinez PA, Chan CKK, Severn-Ellis A, McCombie WR, Parkin IAP, Paterson AH, Pires JC, Sharpe AG, Tang H, Teakle GR, Town CD, Batley J, Edwards D. Nature Communications; 7:13390.
Date published:
November 11, 2016
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Interfering TAL effectors of Xanthomonas oryzae neutralize R-gene-mediated plant disease resistance. Ji Z, Ji C, Liu B, Zou L, Chen G, Yang B. Nature Communications; 7:13435.
Date published:
November 4, 2016
Featured in this article:
Bing Yang.
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The evolution of reactive oxygen species metabolism. Inupakutika MA, Sengupta S, Devireddy AR, Azad RK, Mittler R. Journal of Experimental Botany; 67(21):5933-5943.
Date published:
November 1, 2016
Featured in this article:
Ron Mittler.
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Identification of homogentisate dioxygenase as a target for vitamin E biofortification in oilseeds. Stacey MG, Cahoon RE, Nguyen HT, Cui Y, Sato S, Nguyen CT, Phoka N, Clark KM, Liang Y, Forrester J, Batek J, Do PT, Sleper DA, Clemente TE, Cahoon EB, Stacey G. Plant Physiology; 172(3):1506-1518.
Date published:
November 1, 2016
Featured in this article:
Minviluz (Bing) Stacey,
Gary Stacey.
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Sunflower HaGPAT9-1 is the predominant GPAT during seed development. Payá-Milans M, Aznar-Moreno JA, Balbuena TS, Haslam RP, Gidda SK, Pérez-Hormaeche J, Mullen RT, Thelen JJ, Napier JA, Salas JJ, Garcés R, Martínez-Force E, Venegas-Calerón M. Plant Science; 252:42-52.
Date published:
November 1, 2016
Featured in this article:
Jay Thelen.
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Exploring human diseases and biological mechanisms by protein structure prediction and modeling. Wang J, Luttrell J IV, Zhang N, Khan S, Shi N, Wang MX, Kang J-Q, Wang Z, Xu D. Advances in Experimental Medicine and Biology; 939:39-61.
Date published:
November 1, 2016
Featured in this article:
Dong Xu.
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Soybean tip gene family analysis and characterization of GmTIP1;5 and GmTIP2;5 water transport activity. Song L, Nguyen N, Deshmukh RK, Patil GB, Prince SJ, Valliyodan B, Mutava R, Pike SM, Gassmann W, Nguyen HT. Frontiers in Plant Science; 7(OCTOBER2016):1564.
Date published:
October 21, 2016
Featured in this article:
Walter Gassmann.
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Differential protein structural disturbances and suppression of assembly partners produced by nonsense GABRG2 epilepsy mutations: Implications for disease phenotypic heterogeneity. Wang J, Shen D, Xia G, Shen W, MacDonald RL, Xu D, Kang J-Q. Scientific Reports; 6:35294.
Date published:
October 20, 2016
Featured in this article:
Dong Xu.
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PGen: Large-scale genomic variations analysis workflow and browser in SoyKB. Liu Y, Khan SM, Wang J, Rynge M, Zhnag Y, Zeng S, Chen S, Maldonado dos Santos JV, Valliyodan B, Calyam PP, Merchant N, Nguyen HT, Xu D, Joshi T. BMC Bioinformatics; 17:337.
Date published:
October 6, 2016
Featured in this article:
Dong Xu,
Trupti Joshi.
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Genome sequence of the basal haplorrhine primate Tarsius syrichta reveals unusual insertions. Schmitz J, Noll A, Raabe CA, Churakov G, Voss R, Kiefmann M, Rozhdestvensky T, Brosius J, Baertsch R, Clawson H, Roos C, Zimin A, Minx P, Montague MJ, Wilson RK, Warren WC. Nature Communications; 7:12997.
Date published:
October 6, 2016
Featured in this article:
Wes Warren.
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A proteinaceous organic matrix regulates carbonate mineral production in the marine teleost intestine. Schauer KL, Lemoine CMR, Pelin A, Corradi N, Warren WC, Grosell M. Scientific Reports; 6:34494.
Date published:
October 3, 2016
Featured in this article:
Wes Warren.
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Efficient long-term cryopreservation of pluripotent stem cells at -80 °c. Yuan Y, Yang Y, Tian Y, Park J, Dai A, Roberts RM, Liu Y, Han X. Scientific Reports; 6:34476.
Date published:
October 3, 2016
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.
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AT-RvD1 combined with DEX is highly effective in treating TNF-α-mediated disruption of the salivary gland epithelium. Easley JT, Maruyama CLM, Wang C-S, Baker OJ. Physiological Reports; 4(19):e12990.
Date published:
October 1, 2016
Featured in this article:
Olga Baker.
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GLP-1-RA corrects mitochondrial labile iron accumulation and improves β-cell function in type 2 wolfram syndrome. Danielpur L, Sohn Y-S, Karmi O, Fogel C, Zinger A, Abu-Libdeh A, Israeli T, Riahi Y, Pappo O, Birk R, Zangen DH, Mittler R, Cabantchik Z-I, Cerasi E, Nechushtai R, Leibowitz G. Journal of Clinical Endocrinology and Metabolism; 101(10):3592-3599.
Date published:
October 1, 2016
Featured in this article:
Ron Mittler.
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ABA is required for the accumulation of APX1 and MBF1c during a combination of water deficit and heat stress. Zandalinas SI, Balfagón D, Arbona V, Gómez-Cadenas A, Inupakutika MA, Mittler R. Journal of Experimental Botany; 67(18):5381-5390.
Date published:
October 1, 2016
Featured in this article:
Ron Mittler.
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Timing of rapid diversification and convergent origins of active pollination within agavoideae (Asparagaceae). McKain MR, McNeal JR, Kellar PR, Eguiarte LE, Pires JC, Leebens-Mack J. American Journal of Botany; 103(10):1717-1729.
Date published:
October 1, 2016
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.
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A quantitative RT-PCR assay for rapid detection of Eurasian-lineage H10 subtype influenza A virus. Sun H, Xue J-L, Bailey E, Xu Y, Hu G, Baroch J, Zhang Y, Pace L, DeLiberto TJ, Wan X-F. Virologica Sinica; 31(5):444-447.
Date published:
October 1, 2016
Featured in this article:
XiuFeng “Henry” Wan.
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Pangolin genomes and the evolution of mammalian scales and immunity. Choo SW, Rayko M, Tan TK, Hari R, Komissarov A, Wee WY, Yurchenko AA, Kliver S, Tamazian G, Antunes A, Wilson RK, Warren WC, Koepfli K-P, Minx P, Krasheninnikova K, Kotze A, Dalton DL, Vermaak E, Paterson IC, Dobrynin P, Sitam FT, Rovie-Ryan JJ, Johnson WE, Yusoff AM, Luo S-J, Karuppannan KV, Fang G, Zheng D, Gerstein MB, Lipovich L, O'Brien SJ, Wong GJ. Genome Research; 26(10):1312-1322.
Date published:
October 1, 2016
Featured in this article:
Wes Warren.
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Breast cancer tumorigenicity is dependent on high expression levels of NAF-1 and the lability of its Fe-S clusters. Darash-Yahana M, Pozniak Y, Lu M, Sohn Y-S, Karmi O, Tamir S, Bai F, Song L, Jennings PA, Pikarsky E, Geiger T, Onuchic JN, Mittler R, Nechushtai R. Proceedings of the National Academy of Sciences of the United States of America; 113(39):10890-10895.
Date published:
September 27, 2016
Featured in this article:
Ron Mittler.
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New murine model of early onset autoimmune thyroid disease/hypothyroidism and autoimmune exocrinopathy of the salivary gland. Kayes TD, Weisman GA, Camden JM, Woods LT, Bredehoeft C, Downey EF, Cole J, Braley-Mullen H. Journal of Immunology; 197(6):2119-2130.
Date published:
September 15, 2016
Featured in this article:
Gary Weisman.
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De novo sequencing, assembly and analysis of eight different transcriptomes from the Malayan pangolin. Mohamed Yusoff A, Tan TK, Hari R, Koepfli K-P, Wee WY, Antunes A, Sitam FT, Rovie-Ryan JJ, Karuppannan KV, Wong GJ, Lipovich L, Warren WC, O'Brien SJ, Choo SW. Scientific Reports; 6:28199.
Date published:
September 13, 2016
Featured in this article:
Wes Warren.
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HIPSTR and thousands of lncRNAs are heterogeneously expressed in human embryos, primordial germ cells and stable cell lines. Yunusov D, Anderson L, Dasilva LF, Wysocka J, Ezashi T, Roberts RM, Verjovski-Almeida S. Scientific Reports; 6:32753.
Date published:
September 8, 2016
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Withania somnifera and Its Withanolides Attenuate Oxidative and Inflammatory Responses and Up-Regulate Antioxidant Responses in BV-2 Microglial Cells. Sun GY, Li R, Cui J, Hannink M, Gu Z, Fritsche KL, Lubahn DB, Simonyi A. NeuroMolecular Medicine; 18(3):241-252.
Date published:
September 1, 2016
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.
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Optimization of morpholino antisense oligonucleotides targeting the intronic repressor element1 in spinal muscular atrophy. Osman EY, Washington CW, Kaifer KA, Mazzasette C, Patitucci TN, Florea KM, Simon ME, Ko C-P, Ebert AD, Lorson CL. Molecular Therapy; 24(9):1592-1601.
Date published:
September 1, 2016
Featured in this article:
Christian Lorson.
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Plasma membrane proteomics in the maize primary root growth zone: novel insights into root growth adaptation to water stress. Voothuluru P, Anderson JC, Sharp RE, Peck SC. Plant Cell and Enviroment; 39(9):2043-2054.
Date published:
September 1, 2016
Featured in this article:
Scott Peck.
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Multiple di-leucines in the ATP7A copper transporter are required for retrograde trafficking to the trans-Golgi network. Zhu S, Shanbhag V, Hodgkinson VL, Petris MJ. Metallomics; 8(9):993-1001.
Date published:
September 1, 2016
Featured in this article:
Michael Petris.
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Retrotransposon proliferation coincident with the evolution of dioecy in asparagus. Harkess A, Mercati F, Abbate L, McKain M, Pires JC, Sala T, Sunseri F, Falavigna A, Leebens-Mack J. G3: Genes, Genomes, Genetics; 6(9):2679-2685.
Date published:
September 1, 2016
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.
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Computational analysis of the ligand binding site of the extracellular ATP receptor, DORN1. Nguyen CT, Tanaka K, Cao Y, Cho S-H, Xu D, Stacey G. PLoS ONE; 11(9):e0161894.
Date published:
September 1, 2016
Featured in this article:
Dong Xu,
Gary Stacey.
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Regulation and structure of the heteromeric acetyl-CoA carboxylase. Salie MJ, Thelen JJ. Biochimica et Biophysica Acta - Molecular and Cell Biology of Lipids; 1861(9):1207-1213.
Date published:
September 1, 2016
Featured in this article:
Jay Thelen.
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Acyl-lipid desaturase 1 primes cold acclimation response in Arabidopsis. Chen M, Thelen JJ. Physiologia plantarum; 158(1):11-22.
Date published:
September 1, 2016
Featured in this article:
Jay Thelen.
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A family of negative regulators targets the committed step of de novo fatty acid biosynthesisopen. Salie MJ, Zhang N, Lancikova V, Xu D, Thelen JJ. Plant Cell; 28(9):2312-2325.
Date published:
September 1, 2016
Featured in this article:
Dong Xu,
Jay Thelen.
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The P2Y₂ receptor mediates uptake of matrix-retained and aggregated low density lipoprotein in primary vascular smooth muscle cells. Dissmore T, Seye CI, Medeiros DM, Weisman GA, Bardford B, Mamedova L. Atherosclerosis; 252:128-135.
Date published:
September 1, 2016
Featured in this article:
Gary Weisman.
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Transcriptome Analysis of Active Axillary Buds from Narrow-crown and Broad-crown Poplars Provides Insight into the Phytohormone Regulatory Network for Branching Angle. Tian Y, Wang J, Guo H, Qu K, Xu D, Hou L, Li J. Plant Molecular Biology Reporter; 39(3):595-606.
Date published:
September 1, 2016
Featured in this article:
Dong Xu.
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Regulatory aspects of genome-edited crops. Wolt JD, Yang B, Wang K, Spalding MH. In Vitro Cellular and Developmental Biology - Plant; 52(4):349-353.
Date published:
September 1, 2016
Featured in this article:
Bing Yang.
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Structural basis of HIV inhibition by translocationdefective RT inhibitor 4′-ethynyl-2-fluoro-2′- deoxyadenosine (EFdA). Salie ZL, Kirby KA, Michailidis E, Marchand B, Singh K, Rohan LC, Kodama EN, Mitsuya H, Parniak MA, Sarafianos SG. Proceedings of the National Academy of Sciences of the United States of America; 113(33):9274-9279.
Date published:
August 16, 2016
Featured in this article:
Kamlendra Singh.
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Generalized hierarchical sparse model for arbitrary-order interactive antigenic sites identification in flu virus data. Han L, Zhang Y, Wan X-F, Zhang T. Proceedings of the ACM SIGKDD International Conference on Knowledge Discovery and Data Mining; 13-17-August-2016:865-874.
Date published:
August 13, 2016
Featured in this article:
XiuFeng “Henry” Wan.
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Role of plant MicroRNA in cross-species regulatory networks of humans. Zhang H, Li Y, Liu Y, Liu H, Wang H, Jin W, Zhang Y, Zhang C, Xu D. BMC Systems Biology; 10(1):60.
Date published:
August 8, 2016
Featured in this article:
Dong Xu.
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Preparation of ribosomes for smFRET studies: A simplified approach. Shebl B, Menke DE, Pennella M, Poudyal RR, Burke DH, Cornish PV. Archives of Biochemistry and Biophysics; 603:118-130.
Date published:
August 1, 2016
Featured in this article:
Donald Burke-Agüero.
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Express yourself: Transcriptional regulation of plant innate immunity. Garner CM, Kim SH, Spears BJ, Gassmann W. Seminars in Cell and Developmental Biology; 56:150-162.
Date published:
August 1, 2016
Featured in this article:
Walter Gassmann.
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Genomic analysis reveals hidden biodiversity within colugos, the sister group to primates. Mason VC, Li G, Minx P, Schmitz J, Churakov G, Doronina L, Melin AD, Dominy NJ, Lim NT-L, Springer MS, Wilson RK, Warren WC, Helgen KM, Murphy WJ. Science Advances; 2(8):e1600633.
Date published:
August 1, 2016
Featured in this article:
Wes Warren.
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Characteristics of staminate catkin development and pollen germination in Populus×liaoningensis. Xu D, Li J, Xie L, Qi X, Wang J, Xing S. Linye Kexue/Scientia Silvae Sinicae; 52(8):38-45.
Date published:
August 1, 2016
Featured in this article:
Dong Xu.
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Effects of 3 sequestering agents on milk aflatoxin M₁ concentration and the performance and immune status of dairy cows fed diets artificially contaminated with aflatoxin B₁. Ogunade IM, Arriola KG, Jiang Y, Driver JP, Staples CR, Adesogan AT. Journal of Dairy Science; 99(8):6263-6273.
Date published:
August 1, 2016
Featured in this article:
John Driver.
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Spreading winge and flying high: The evolutionary importance of polyploidy after a century of study. Barker MS, Husband BC, Chris Pires J. American Journal of Botany; 103(7):1139-1145.
Date published:
July 28, 2016
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.
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Identification and comparative analysis of differential gene expression in soybean leaf tissue under drought and flooding stress revealed by RNA-Seq. Chen W, Yao Q, Patil GB, Agarwal G, Deshmukh RK, Lin L, Wang B, Wang Y, Prince SJ, Song L, Xu D, An YC, Valliyodan B, Varshney RK, Nguyen HT. Frontiers in Plant Science; 7(JULY2016):1044.
Date published:
July 19, 2016
Featured in this article:
Dong Xu.
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Hydroponics: A versatile system to study nutrient allocation and plant responses to nutrient availability and exposure to toxic elements. Nguyen NT, McInturf SA, Mendoza-Cózatl DG. Journal of Visualized Experiments; 2016(113):e54317.
Date published:
July 13, 2016
Featured in this article:
David Mendoza-Cózatl.
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Current trends in salivary gland tight junctions. Baker, OJ. Tissue Barriers; 4(3):e1162348.
Date published:
July 2, 2016
Featured in this article:
Olga Baker.
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ZEAXANTHIN EPOXIDASE activity potentiates carotenoid degradation in maturing seed. Gonzalez-Jorge S, Mehrshahi P, Magallanes-Lundback M, Lipka AE, Angelovici R, Gore MA, DellaPenna, D. Plant Physiology; 171(3):1837-1851.
Date published:
July 1, 2016
Featured in this article:
Ruthie Angelovici.
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Phytochemicals and botanical extracts regulate NF-κB and Nrf2/ARE reporter activities in di TNC1 astrocytes. Ajit D, Simonyi A, Li R, Chen Z, Hannink M, Fritsche KL, Mossine VV, Smith RE, Dobbs TK, Luo R, Folk WR, Gu Z, Lubahn DB, Weisman GA, Sun GY. Neurochemistry International; 97:49-56.
Date published:
July 1, 2016
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Gary Weisman.
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ROS, calcium, and electric signals: Key mediators of rapid systemic signaling in plants. Gilroy S, Białasek M, Suzuki N, Górecka M, Devireddy AR, Karpiński S, Mittler R. Plant Physiology; 171(3):1606-1615.
Date published:
July 1, 2016
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Ron Mittler.
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Recent progress in understanding the role of reactive oxygen species in plant cell signaling. Dietz K-J, Mittler R, Noctor G. Plant Physiology; 171(3):1535-1539.
Date published:
July 1, 2016
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Ron Mittler.
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Evolutionary relationships in Panicoid grasses based on plastome phylogenomics (Panicoideae; Poaceae). Burke SV, Wysocki WP, Zuloaga FO, Craine JM, Pires JC, Edger PP, Mayfield-Jones D, Clark LG, Kelchner SA, Duvall MR. BMC Plant Biology; 16(1):140.
Date published:
June 18, 2016
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Accumulation of flavonols over hydroxycinnamic acids favors oxidative damage protection under abiotic stress. Martinez V, Mestre TC, Rubio F, Girones-Vilaplana A, Moreno DA, Mittler R, Rivero RM. Frontiers in Plant Science; 7(JUNE2016):838.
Date published:
June 15, 2016
Featured in this article:
Ron Mittler.
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Laminin-111 Peptides Conjugated to Fibrin Hydrogels Promote Formation of Lumen Containing Parotid Gland Cell Clusters. Nam K, Jones JP, Lei P, Andreadis ST, Baker OJ. Biomacromolecules; 17(6):2293-2301.
Date published:
June 13, 2016
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Olga Baker.
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DHX9/RHA Binding to the PBS-Segment of the Genomic RNA during HIV-1 Assembly Bolsters Virion Infectivity. Boeras I, Song Z, Moran A, Franklin J, Brown WC, Johnson M, Boris-Lawrie K, Heng X. Journal of Molecular Biology; 428(11):2418-2429.
Date published:
June 5, 2016
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Marc Johnson.
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Enhanced cadmium efflux and root-to-shoot translocation are conserved in the hyperaccumulator Sedum alfredii (Crassulaceae family). Zhang Z, Yu Q, Du H, Ai W, Yao X, Mendoza-Cózatl DG, Qiu B. FEBS Letters; 1757-1764.
Date published:
June 1, 2016
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David Mendoza-Cózatl.
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The Raf-like kinase ILK1 and the high affinity K⁺ transporter HAK5 are required for innate immunity and abiotic stress response. Brauer EK, Ahsan N, Dale R, Kato N, Coluccio AE, Piñeros MA, Kochian LV, Thelen JJ, Popescu SC. Plant Physiology; 171(2):1470-1484.
Date published:
June 1, 2016
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Jay Thelen.
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Metabolite variation in hybrid corn grain from a large-scale multisite study. Chen M, Rao RSP, Zhang Y, Zhong C, Thelen JJ. Crop Journal; 4(3):177-187.
Date published:
June 1, 2016
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Jay Thelen.
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Pathogenesis of influenza D virus in cattle. Ferguson L, Olivier AK, Genova S, Epperson WB, Smith DR, Schneider L, Barton K, McCuan K, Webby RJ, Wan X-F. Journal of Virology; 90(12):5636-5642.
Date published:
June 1, 2016
Featured in this article:
XiuFeng “Henry” Wan.
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Diversity of ABC transporter genes across the plant kingdom and their potential utility in biotechnology. Lane TS, Rempe CS, Davitt J, Staton ME, Peng Y, Soltis DE, Melkonian M, Deyholos M, Leebens-Mack JH, Chase M, Rothfels CJ, Stevenson D, Graham SW, Yu J, Liu T, Pires JC, Edger PP, Zhang Y, Xie Y, Zhu Y, Carpenter E, Wong GK-S, Stewart CN Jr. BMC Biotechnology; 16(1):47.
Date published:
May 31, 2016
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TALEN-Mediated Homologous Recombination Produces Site-Directed DNA Base Change and Herbicide-Resistant Rice. Li T, Liu B, Chen CY, Yang B. Journal of Genetics and Genomics; 43(5):297-305.
Date published:
May 20, 2016
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Bing Yang.
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Germ cell and tumor associated piRNAs in the medaka and Xiphophorus melanoma models. Kneitz S, Mishra RR, Chalopin D, Postlethwait J, Warren WC, Walter RB, Schartl M. BMC Genomics; 17(1):357.
Date published:
May 17, 2016
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Wes Warren.
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Comparison of syncytiotrophoblast generated from human embryonic stem cells and from term placentas. Yabe S, Alexenko AP, Amita M, Yang Y, Schust DJ, Sadovsky Y, Ezashi T, Roberts RM. Proceedings of the National Academy of Sciences of the United States of America; 113(19):E2598-E2607.
Date published:
May 10, 2016
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In vivo analysis of infectivity, fusogenicity, and incorporation of a mutagenic viral glycoprotein library reveals determinants for virus incorporation. Salamango DJ, Alam KK, Burke DH, Johnson MC. Journal of Virology; 90(14):6502-6514.
Date published:
May 4, 2016
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Donald Burke-Agüero,
Marc Johnson.
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Common bean: A legume model on the rise for unraveling responses and adaptations to iron, zinc, and phosphate deficiencies. Castro-Guerrero NA, Isidra-Arellano MC, Mendoza-Cozat DG, Valdés-López O. Frontiers in Plant Science; 7(May 2016):600.
Date published:
May 3, 2016
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David Mendoza-Cózatl.
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The Arabidopsis immune regulator SRFR1 dampens defences against herbivory by Spodoptera exigua and parasitism by Heterodera schachtii. Nguyen PDT, Pike S, Wang J, Nepal Poudel A, Heinz R, Schultz JC, Koo AJ, Mitchum MG, Appel HM, Gassmann W. Molecular Plant Pathology; 17(4):588-600.
Date published:
May 1, 2016
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Walter Gassmann.
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Rescue of a mouse model of spinal muscular atrophy with respiratory distress type 1 by AAV9-IGHMBP2 is dose dependent. Shababi M, Feng Z, Villalon E, Sibigtroth CM, Osman EY, Miller MR, Williams-Simon PA, Lombardi A, Sass TH, Atkinson AK, Garcia ML, Ko C-P, Lorson CL. Molecular Therapy; 24(5):855-866.
Date published:
May 1, 2016
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Christian Lorson.
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Convergent evolution and the origin of complex phenotypes in the age of systems biology. Washburn JD, Bird KA, Conant GC, Pires JC. International Journal of Plant Sciences; 177(4):305-318.
Date published:
May 1, 2016
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.
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Antigenic characterization of H3 subtypes of avian influenza a viruses from North America. Bailey E, Long L-P, Zhao N, Hall JS, Baroch JA, Nolting J, Senter L, Cunningham FL, Pharr GT, Hanson L, Slemons R, Deliberto TJ, Wan X-F. Avian Diseases; 60(1):346-353.
Date published:
May 1, 2016
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XiuFeng “Henry” Wan.
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Detection of avian H7N9 influenza a viruses in the yangtze delta region of China during early H7N9 outbreaks. Li Y, Huang X-M, Zhao D-M, Liu Y-Z, He K-W, Liu Y-X, Chen C-H, Long L-P, Xu Y, Xie X-X, Han K-K, Liu X-Y, Yang J, Zhang Y-F, Fan F, Webby R, Wan X-F. Avian Diseases; 60(1):118-125.
Date published:
May 1, 2016
Featured in this article:
XiuFeng “Henry” Wan.
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Opsin repertoire and expression patterns in horseshoe crabs: Evidence from the genome of limulus polyphemus (arthropoda: Chelicerata). Battelle B-A, Ryan JF, Kempler KE, Saraf SR, Marten CE, Warren WC, Minx PJ, Montague MJ, Green PJ, Schmidt SA, Fulton L, Patel NH, Protas ME, Wilson RK, Porter ML. Genome Biology and Evolution; 8(5):1571-1589.
Date published:
May 1, 2016
Featured in this article:
Wes Warren.
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Purinergic receptors as potential therapeutic targets in Alzheimer’s disease. Woods LT, Ajit D, Camden JM, Erb L, Weisman GA. Neuropharmacology; 104:169-179.
Date published:
May 1, 2016
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Gary Weisman.
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Post-irradiated human submandibular glands display high collagen deposition, disorganized cell junctions, and an increased number of adipocytes. Nam K, Maruyama CL, Trump BG, Buchmann L, Hunt JP, Monroe MM, Baker OJ. Journal of Histochemistry and Cytochemistry; 64(6):343-352.
Date published:
April 28, 2016
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Olga Baker.
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Soybean roots grown under heat stress show global changes in their transcriptional and proteomic profiles. Valdés-López O, Batek J, Gomez-Hernandez N, Nguyen CT, Isidra-Arellano MC, Zhang N, Joshi T, Xu D, Hixson KK, Weitz KK, Alrich JT, Paša-Tolić L, Stacey G. Frontiers in Plant Science; 7(APR2016):517.
Date published:
April 25, 2016
Featured in this article:
Trupti Joshi,
Dong Xu,
Gary Stacey.
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ALX/FPR2 modulates anti-inflammatory responses in mouse submandibular gland. Wang C-S, Wee Y, Yang C-H, Melvin JE, Baker OJ. Scientific Reports; 6:24244.
Date published:
April 11, 2016
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Olga Baker.
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Evaluation of a custom single Peltier-cooled ablation cell for elemental imaging of biological samples in laser ablation-inductively coupled plasma-mass spectrometry (LA-ICP-MS). Hamilton JS, Gorishek EL, Mach PM, Sturtevant D, Ladage ML, Suzuki N, Padilla PA, Mittler R, Chapman KD, Verbeck GF. Journal of Analytical Atomic Spectrometry; 31(4):1030-1033.
Date published:
April 1, 2016
Featured in this article:
Ron Mittler.
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Editorial overview: Genome studies and molecular genetics: Of plant genes, genomes, and genomics. Van de Peer Y, Pires JC. Current Opinion in Plant Biology; 30:iv-vi.
Date published:
April 1, 2016
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Virological failure in patients with HIV-1 subtype C receiving antiretroviral therapy: an analysis of a prospective national cohort in Sweden. Häggblom A, Svedhem V, Singh K, Sönnerborg A, Neogi U. The Lancet HIV; 3(4):e166-e174.
Date published:
April 1, 2016
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Kamlendra Singh.
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Differential growth responses of Brachypodium distachyon genotypes to inoculation with plant growth promoting rhizobacteria. do Amaral FP, Pankievicz VCS, Arisi ACM, de Souza EM, Pedrosa F, Stacey G. Plant Molecular Biology; 90(6):689-697.
Date published:
April 1, 2016
Featured in this article:
Gary Stacey.
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Improving degree-based variable ordering heuristics for solving constraint satisfaction problems. Li H, Liang Y, Zhang N, Guo J, Xu D, Li Z. Journal of Heuristics; 22(2):125-145.
Date published:
April 1, 2016
Featured in this article:
Dong Xu.
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The broadly effective recessive resistance gene xa5 of rice is a virulence effector-dependent quantitative trait for bacterial blight. Huang S, Antony G, Li T, Liu B, Obasa K, Yang B, White FF. Plant Journal; 86(2):186-194.
Date published:
April 1, 2016
Featured in this article:
Bing Yang.
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Landscape of genomic diversity and trait discovery in soybean. Valliyodan B, Dan Qiu, Patil G, Zeng P, Huang J, Dai L, Chen C, Li Y, Joshi T, Song L, Vuong TD, Musket TA, Xu D, Shannon JG, Shifeng C, Liu X, Nguyen HT. Scientific Reports; 6:23598.
Date published:
March 31, 2016
Featured in this article:
Trupti Joshi,
Dong Xu.
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α-Galactosylceramide protects swine against influenza infection when administered as a vaccine adjuvant. Artiaga BL, Yang G, Hackmann TJ, Liu Q, Richt JA, Salek-Ardakani S, Castleman WL, Lednicky JA, Driver JP. Scientific Reports; 6:23593.
Date published:
March 23, 2016
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John Driver.
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A phylogenomic assessment of ancient polyploidy and genome evolution across the poales. McKain MR, Tang H, McNeal JR, Ayyampalayam S, Davis JI, Depamphilis CW, Givnish TJ, Chris Pires J, Stevenson DW, Leebens-Mack JH. Genome Biology and Evolution; 8(4):1150-1164.
Date published:
March 17, 2016
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.
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Erratum: Genome of Rhodnius prolixus, an insect vector of Chagas disease, reveals unique adaptations to hematophagy and parasite infection (Proceedings of the National Academy of Sciences of the United States of America (2015) 112 (14936-14941) DOI 10.1073/pnas.1506226112). Mesquita RD, Vionette-Amaral RJ, Lowenberger C, Rivera-Pomar R, Monteiro FA, Minx P, Spieth J, Carvalho AB, Panzera F, Lawson D, Torres AQ, Ribeiro JMC, Sorgine MHF, Waterhouse RM, Montague MJ, Abad-Franch F, Alves-Bezerra M, Amaral LR, Araujo HM, Araujo RN, Aravind L, Atella GC, Azambuja P, Berni M, Bittencourt-Cunha PR, Braz GRC, Calderón-Fernández G, A Carareto CM, Christensen MB, Costa IR, Costa SG, Dansa M, Daumas-Filho CRO, De-Paula IF, Dias FA, Dimopoulos G, Emrich SJ, Esponda-Behrens N, Fampa P, Fernandez-Medina RD, Da Fonseca RN, Fontenele M, Fronick C, Fulton LA, Gandara AC, Garcia ES, Genta FA, Giraldo-Calderón GI, Gomes B, Gondim KC, Granzotto A, Guarneri AA, Guigó R, Harry M, Hughes DST, Jablonka W, Jacquin-Joly E, Juárez MP, Koerich LB, Latorre-Estivalis JM, Lavore A, Lazoski C, Lazzari CR, Lorenzo MG, Majerowicz D, Mariotti M, Masuda H, Megy K, Melo ACA, Missirlis F, Mota T, Noriega FG, Nunes RD, Oliveira RLL, Oliverira-Silva GO, Pascual A, Pavan MG, Peixoto AA, Pereira MH, Pike A, Polycarpo C, Prosdocimi F, Ribeiro-Rodrigues R, Robertson HM, Salerno AP, Salmon D, Santesmasses D, Schama R, Seabra-Junior ES, Silva-Cardoso L, Silva-Neto MAC, Souza-Gomes M, Sterkel M, Taracena ML, Tojo M, Tu ZJ, Tubio JMC, Ursic-Bedoya R, Venancio TM, Walter-Nuno AB, Wilson D, Warren WC, Wilson RK, Huebner E, Dotson EM, Oliveira PL. Proceedings of the National Academy of Sciences of the United States of America; 113(10):E1415-E1416.
Date published:
March 8, 2016
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Wes Warren.
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Identification of AtOPT4 as a Plant Glutathione Transporter. Zhang Z, Xie Q, Jobe TO, Kau AR, Wang C, Li Y, Qiu B, Wang Q, Mendoza-Cózatl DG, Schroeder JI. Molecular Plant; 9(3):481-484.
Date published:
March 7, 2016
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David Mendoza-Cózatl.
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Preface. Gassmann W, Appel HM, Oliver MJ. Journal of Experimental Botany; 67(7):2023-2024.
Date published:
March 1, 2016
Featured in this article:
Walter Gassmann.
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An Improved Transient Expression System Using Arabidopsis Protoplasts. Cao Y, Li H, Pham AQ, Stacey G. Current Protocols In Plant Biology; 1(2):285-291.
Date published:
March 1, 2016
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Gary Stacey.
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Pluripotent stem cells from domesticated mammals. Ezashi T, Yuan Y, Roberts RM. Annual Review of Animal Biosciences; 4:223-253.
Date published:
February 15, 2016
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Evaluation of genetic variation among Brazilian soybean cultivars through genome resequencing. dos Santos JVM, Valliyodan B, Joshi T, Khan SM, Liu Y, Wang J, Vuong TD, de Oliveira MF, Marcelino-Guimarães FC, Xu D, Nguyen HT, Abdelnoor RV. BMC Genomics; 17(1):110.
Date published:
February 13, 2016
Featured in this article:
Trupti Joshi,
Dong Xu.
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Limited Antigenic Diversity in Contemporary H7 Avian-Origin Influenza A Viruses from North America. Xu Y, Bailey E, Spackman E, Li T, Wang H, Long L-P, Baroch JA, Cunningham FL, Lin X, Jarman RG, DeLiberto TJ, Wan X-F. Scientific Reports; 6:20688.
Date published:
February 9, 2016
Featured in this article:
XiuFeng “Henry” Wan.
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Divergence and functional degradation of a sex chromosome-like supergene. Tuttle EM, Bergland AO, Korody ML, Brewer MS, Newhouse DJ, Minx P, Stager M, Betuel A, Cheviron ZA, Warren WC, Gonser RA, Balakrishnan CN. Current Biology; 26(3):344-350.
Date published:
February 8, 2016
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Wes Warren.
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Resolution of brassicaceae phylogeny using nuclear genes uncovers nested radiations and supports convergent morphological evolution. Huang C-H, Sun R, Hu Y, Zeng L, Zhang N, Cai L, Zhang Q, Koch MA, Al-Shehbaz I, Edger PP, Pires JC, Tan D-Y, Zhong Y, Ma H. Molecular Biology and Evolution; 33(2):394-412.
Date published:
February 1, 2016
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Factors influencing the efficacy of rilpivirine in HIV-1 subtype C in low- and middle-income countries. Neogi U, Häggblom A, Singh K, Rogers LC, Rao SD, Amogne W, Schülter E, Zazzi M, Arnold E, Sarafianos SG, Sönnerborg A. Journal of Antimicrobial Chemotherapy; 71(2):367-371.
Date published:
February 1, 2016
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Kamlendra Singh.
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FALCON@home: A high-throughput protein structure prediction server based on remote homologue recognition. Wang C, Zhang H, Zheng W-M, Xu D, Zhu J, Wang B, Ning K, Sun S, Li SC, Bu D. Bioinformatics; 32(3):462-464.
Date published:
February 1, 2016
Featured in this article:
Dong Xu.
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The Regulatory Status of Genome-edited Crops. Wolt JD, Wang K, Yang B. Plant Biotechnology Journal; 14(2):510-518.
Date published:
February 1, 2016
Featured in this article:
Bing Yang.
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Use of designer nucleases for targeted gene and genome editing in plants. Weeks DP, Spalding MH, Yang B. Plant Biotechnology Journal; 14(2):483-495.
Date published:
February 1, 2016
Featured in this article:
Bing Yang.
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Placental development in a mouse model of spinal muscular atrophy. Van Gronigen Caesar G, Dale JM, Osman EY, Garcia ML, Lorson CL, Schulz LC. Biochemical and Biophysical Research Communications; 470(1):82-87.
Date published:
January 29, 2016
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Christian Lorson.
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An NF-κB – EphrinA5-Dependent Communication between NG2+ Interstitial Cells and Myoblasts Promotes Muscle Growth in Neonates. Gu J-M, Wang DJ, Peterson JM, Shintaku J, Liyanarachchi S, Coppola V, Frakes AE, Kaspar BK, Cornelison DD, Guttridge DC. Developmental Cell; 36(2):215-224.
Date published:
January 25, 2016
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D Cornelison.
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Evolutionary signals of selection on cognition from the great tit genome and methylome. Laine VN, Gossmann TI, Schachtschneider KM, Garroway CJ, Madsen O, Verhoeven KJF, De Jager V, Megens H-J, Warren WC, Minx P, Crooijmans RPMA, Corcoran P, Adriaensen F, Belda E, Bushuev A, Cichon M, Charmantier A, Dingemanse N, Doligez B, Eeva T, Erikstad KE, Fedorov S, Hau M, Hille S, Hinde C, Kempenaers B, Kerimov A, Krist M, Mand R, Matthysen E, Nager R, Norte C, Orell M, Richner H, Slagsvold T, Tilgar V, Tinbergen J, Torok J, Tschirren B, Yuta T, Sheldon BC, Slate J, Zeng K, Van Oers K, Visser ME, Groenen MAM. Nature Communications; 7:10474.
Date published:
January 25, 2016
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Wes Warren.
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Predicting DNA Methylation State of CpG Dinucleotide Using Genome Topological Features and Deep Networks. Wang Y, Liu T, Xu D, Shi H, Zhang C, Mo Y-Y, Wang Z. Scientific Reports; 6:19598.
Date published:
January 22, 2016
Featured in this article:
Dong Xu.
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Genome-wide transcriptome analysis of soybean primary root under varying water-deficit conditions. Song L, Prince S, Valliyodan B, Joshi T, Maldonado dos Santos JV, Wang J, Lin L, Wan J, Wang Y, Xu D, Nugyen HT. BMC Genomics; 17(1):57.
Date published:
January 15, 2016
Featured in this article:
Trupti Joshi,
Dong Xu.
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A full Bayesian partition model for identifying hypo- and hyper-methylated loci from single nucleotide resolution sequencing data. Wang H, He C, Kushwaha G, Xu D, Qiu J. BMC Bioinformatics; 17(1):S7.
Date published:
January 11, 2016
Featured in this article:
Dong Xu.
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X. couchianus and X. hellerii genome models provide genomic variation insight among Xiphophorus species. Shen Y, Chalopin D, Garcia T, Boswell M, Boswell W, Shiryev SA, Agarwala R, Volff J-N, Postlethwait JH, Schartl M, Minx P, Warren WC, Walter RB. BMC Genomics; 17(1):37.
Date published:
January 7, 2016
Featured in this article:
Wes Warren.
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Selecting superior de novo transcriptome assemblies: Lessons learned by leveraging the best plant genome. Honaas LA, Wafula EK, Wickett NJ, Der JP, Zhang Y, Edger PP, Altman NS, Chris Pires J, Leebens-Mack JH, DePamphilis CW. PLoS ONE; 11(1):e0146062.
Date published:
January 5, 2016
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RDF Sketch Maps – Knowledge complexity reduction for precision medicine analytics. Thanintorn N, Wang J, Ersoy I, Al-Taie Z, Jiang Y, Wang D, Verma M, Joshi T, Hammer R, Xu D, Shin D. Pacific Symposium on Biocomputing; 417-428.
Date published:
January 4, 2016
Featured in this article:
Trupti Joshi,
Dong Xu.
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Activation of apoptosis in NAF-1-deficient human epithelial breast cancer cells. Holt SH, Darash-Yahana M, Sohn YS, Song L, Karmi O, Tamir S, Michaeli D, Luo Y, Paddock ML, Jennings PA, Onuchic JN, Azad RK, Pikarsky E, Cabantchik IZ, Nechushtai R, Mittler R. Journal of Cell Science; 129(1):155-165.
Date published:
January 1, 2016
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Ron Mittler.
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ABA is required for plant acclimation to a combination of salt and heat stress. Suzuki N, Bassil E, Hamilton JS, Inupakutika MA, Zandalinas SI, Tripathy D, Luo Y, Dion E, Fukui G, Kumazaki A, Nakano R, Rivero RM, Verbeck GF, Azad RK, Blumwald E, Mittler R. PLoS ONE; 11(1):0147625.
Date published:
January 1, 2016
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Ron Mittler.
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The Menkes and Wilson disease genes counteract in copper toxicosis in Labrador retrievers: A new canine model for copper-metabolism disorders. Fieten H, Gill Y, Martin AJ, Concilli M, Dirksen K, Van Steenbeek FG, Spee B, Van Den Ingh TSGAM, Martens ECCP, Festa P, Chesi G, Van De Sluis B, Houwen RHJH, Watson AL, Aulchenko YS, Hodgkinson VL, Zhu S, Petris MJ, Polishchuk RS, Leegwater PAJ, Rothuizen J. DMM Disease Models and Mechanisms; 9(1):25-38.
Date published:
January 1, 2016
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Michael Petris.
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Plastid genomes reveal support for deep phylogenetic relationships and extensive rate variation among palms and other commelinid monocots. Barrett CF, Baker WJ, Comer JR, Conran JG, Lahmeyer SC, Leebens-Mack JH, Li J, Lim GS, Mayfield-Jones DR, Perez L, Medina J, Pires JC, Santos C, Wm Stevenson D, Zomlefer WB, Davis JI. New Phytologist; 209(2):855-870.
Date published:
January 1, 2016
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Identification and functional characterization of soybean root hair microRNAs expressed in response to Bradyrhizobium japonicum infection. Yan Z, Hossain MS, Valdés-López O, Hoang NT, Zhai J, Wang J, Liabault M, Brechenmacher L, Findley S, Joshi T, Qiu L, Sherrier DJ, Ji T, Meyers BC, Xu D, Stacey G. Plant Biotechnology Journal; 14(1):332-341.
Date published:
January 1, 2016
Featured in this article:
Trupti Joshi,
Dong Xu,
Gary Stacey.
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The time is right to focus on model organism metabolomes. Edison AS, Hall RD, Junot C, Karp PD, Kurland IJ, Mistrik R, Reed LK, Saito K, Salek RM, Steinbeck C, Sumner LW, Viant MR. Metabolites; 6(1):8.
Date published:
January 1, 2016
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Lloyd Sumner.
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INTEGRATE: Gene fusion discovery using whole genome and transcriptome data. Zhang J, White NM, Schmidt HK, Fulton RS, Tomlinson C, Warren WC, Wilson RK, Maher CA. Genome Research; 26(1):108-118.
Date published:
January 1, 2016
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Wes Warren.
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Patterns of genome-wide variation in Glossina fuscipes fuscipes tsetse flies from Uganda. Gloria-Soria A, Dunn WA, Telleria EL, Evans BR, Okedi L, Echodu R, Warren WC, Montague MJ, Aksoy S, Caccone A. G3: Genes, Genomes, Genetics; 6(6):1573-1584.
Date published:
January 1, 2016
Featured in this article:
Wes Warren.
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A high-resolution SNP array-based linkage map anchors a new domestic cat draft genome assembly and provides detailed patterns of recombination. Li G, Hillier LW, Grahn RA, Zimin AV, David VA, Menotti-Raymond M, Middleton R, Hannah S, Hendrickson S, Makunin A, O'Brien SJ, Minx P, Wilson RK, Lyons LA, Warren WC, Murphy WJ. G3: Genes, Genomes, Genetics; 6(6):1607-1616.
Date published:
January 1, 2016
Featured in this article:
Wes Warren.
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The physarum polycephalum genome reveals extensive use of prokaryotic two-component and metazoan-type tyrosine kinase signaling. Schaap P, Barrantes I, Minx P, Sasaki N, Anderson RW, Bénard M, Biggar KK, Buchler NE, Bundschuh R, Chen X, Fronick C, Fulton L, Golderer G, Jahn N, Knoop V, Landerweber LF, Maric C, Miller D, Noegel AA, Peace R, Pierron G, Sasaki T, Schallenberg-Rüdinger M, Schleicher M, Singh R, Spaller T, Storey KB, Suzuki T, Tomlinson C, Tyson JJ, Warren WC, Werner ER, Werner-Felmayer G, Wilson RK, Winckler T, Gott JM, Glöckner G, Marwan W. Genome Biology and Evolution; 8(1):109-125.
Date published:
January 1, 2016
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Wes Warren.
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PGD: a pangolin genome hub for the research community. Tan TK, Tan KY, Hari R, Mohamed Yusoff A, Wong GJ, Siow CC, Mutha NV, Rayko M, Komissarov A, Dobrynin P, Krasheninnikova K, Tamazian G, Paterson IC, Warren WC, Johnson WE, O'Brien SJ, Choo SW. Database : the journal of biological databases and curation; 2016.
Date published:
January 1, 2016
Featured in this article:
Wes Warren.
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Network stratification analysis for identifying function-specific network layers. Zhang C, Wang J, Zhang C, Liu J, Xu D, Chen L. Molecular BioSystems; 12(4):1232-1240.
Date published:
January 1, 2016
Featured in this article:
Dong Xu.
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Hypomethylation coordinates antagonistically with hypermethylation in cancer development: A case study of leukemia. Kushwaha G, Dozmorov M, Wren JD, Qiu J, Shi H, Xu D. Human Genomics; 10:18.
Date published:
January 1, 2016
Featured in this article:
Dong Xu.
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Complete genome sequence of the African strain AXO1947 of Xanthomonas oryzae pv. oryzae. Huguet-Tapoa JC, Peng Z, Yang B, Yin Z, Liu S, White FF. Genome Announcements; 4(1):e01730-15.
Date published:
January 1, 2016
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Bing Yang.
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Natural killer cells and innate interferon gamma participate in the host defense against respiratory vaccinia virus infection. Abboud G, Tahiliani V, Desai P, Varkoly K, Driver J, Huntchinson TE, Salek-Ardakani S. Journal of Virology; 90(1):129-141.
Date published:
January 1, 2016
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John Driver.
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Suppressors of cytokine signaling in sickness and in health of pancreatic β-cells. Ye C, Driver JP. Frontiers in Immunology; 7(MAY):169.
Date published:
January 1, 2016
Featured in this article:
John Driver.
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The effects of 2,4-dinitrophenol and d-glucose concentration on the development, sex ratio, and interferon-tau (IFNT) production of bovine blastocysts. Green MP, Harvey AJ, Spate LD, Kimura K, Thompson JG, Roberts RM. Molecular Reproduction and Development; 83(1):50-60.
Date published:
January 1, 2016
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.
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The evolution of the placenta. Roberts RM, Green JA, Schilz LC. Reproduction; 152(5):R179-R189.
Date published:
January 1, 2016
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.
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2015
Loss of function of folylpolyglutamate synthetase 1 reduces lignin content and improves cell wall digestibility in Arabidopsis. Srivastava AC, Chen F, Ray T, Pattathil S, Peña MJ, Avci U, Li H, Huhman DV, Backe J, Urbanowicz B, Miller JS, Bedair M, Wyman CE, Sumner LW, York WS, Hahn MG, Dixon RA, Blancaflor EB, Tang Y. Biotechnology for Biofuels; 8(1):403.
Date published:
December 21, 2015
Featured in this article:
Lloyd Sumner.
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Polymorphism of the glucosyltransferase gene (ycjM) in Escherichia coli and its use for tracking human fecal pollution in water. Deng D, Zhang N, Xu D, Reed M, Liu F, Zheng G. Science of the Total Environment; 537:260-267.
Date published:
December 15, 2015
Featured in this article:
Dong Xu.
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Whole-genome gene expression profiling revealed genes and pathways potentially involved in regulating interactions of soybean with cyst nematode (Heterodera glycines Ichinohe). Wan J, Vuong T, Jiao Y, Joshi T, Zhang H, Xu D, Nguyen HT. BMC Genomics; 16(1):148.
Date published:
December 12, 2015
Featured in this article:
Trupti Joshi,
Dong Xu.
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Ephrin-A3 promotes and maintains slow muscle fiber identity during postnatal development and reinnervation. Stark DA, Coffey NJ, Pancoast HR, Arnold LL, Walker JPD, Vallée J, Robitaille R, Garcia ML, Cornelison DDW. Journal of Cell Biology; 211(5):1077-1091.
Date published:
December 7, 2015
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D Cornelison.
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Neural activation patterns underlying basolateral amygdala influence on intra-accumbens opioid-driven consummatory versus appetitive high-fat feeding behaviors in the rat. Parker KE, McCabe MP, Johns HW, Lund DK, Odu F, Sharma R, Thakkar MM, Cornelison DDW, Will MJ. Behavioral Neuroscience; 129(6):812-821.
Date published:
December 1, 2015
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D Cornelison.
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Meeting report: Fungal genomics meets social media: Highlights of the 28th fungal genetics conference at asilomar. Momany M, Di Pietro A, Alexander WG, Barker BM, Harb OS, Kamoun S, Martin F, Chris Pires J, Stajich JE, Thomma BPHJ, Unruh S. G3: Genes, Genomes, Genetics; 5(12):2523-2525.
Date published:
December 1, 2015
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.
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Core clock, SUB1, and ABAR genes mediate flooding and drought responses via alternative splicing in soybean. Syed NH, Prince SJ, Mutava RN, Patil G, Li S, Chen W, Babu V, Joshi T, Khan S, Nguyen HT. Journal of Experimental Botany; 66(22):7129-7149.
Date published:
December 1, 2015
Featured in this article:
Trupti Joshi.
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Exploring soybean metabolic pathways based on probabilistic graphical model and knowledge-based methods. Hou J, Stacey G, Cheng J. Eurasip Journal on Bioinformatics and Systems Biology; 2015(1):5.
Date published:
December 1, 2015
Featured in this article:
Gary Stacey.
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Influenza D virus infection in Mississippi beef cattle. Ferguson L, Eckard L, Epperson WB, Long L-P, Smith D, Huston C, Genova S, Webby R, Wan X-F. Virology; 486:28-34.
Date published:
December 1, 2015
Featured in this article:
XiuFeng “Henry” Wan.
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Genome of Rhodnius prolixus, an insect vector of Chagas disease, reveals unique adaptations to hematophagy and parasite infection. Mesquita RD, Vionette-Amaral RJ, Lowenberger C, Rivera-Pomar R, Monteiro FA, Minx P, Spieth J, Carvalho AB, Panzera F, Lawson D, Torres AQ, Ribeiro JMC, Sorgine MHF, Waterhouse RM, Montague MJ, Abad-Franch F, Alves-Bezerra M, Amaral LR, Araujo HM, Araujo RN, Aravind L, Atella GC, Azambuja P, Berni M, Bittencourt-Cunha PR, Braz GRC, Calderón-Fernández G, A Carareto CM, Christensen MB, Costa IR, Costa SG, Dansa M, Daumas-Filho CRO, De-Paula IF, Dias FA, Dimopoulos G, Emrich SJ, Esponda-Behrens N, Fampa P, Fernandez-Medina RD, Da Fonseca RN, Fontenele M, Fronick C, Fulton LA, Gandara AC, Garcia ES, Genta FA, Giraldo-Calderón GI, Gomes B, Gondim KC, Granzotto A, Guarneri AA, Guigó R, Harry M, Hughes DST, Jablonka W, Jacquin-Joly E, Juárez MP, Koerich LB, Latorre-Estivalis JM, Lavore A, Lazoski C, Lazzari CR, Lorenzo MG, Majerowicz D, Mariotti M, Masuda H, Megy K, Melo ACA, Missirlis F, Mota T, Noriega FG, Nunes RD, Oliveira RLL, Oliverira-Silva GO, Pascual A, Pavan MG, Peixoto AA, Pereira MH, Pike A, Polycarpo C, Prosdocimi F, Ribeiro-Rodrigues R, Robertson HM, Salerno AP, Salmon D, Santesmasses D, Schama R, Seabra-Junior ES, Silva-Cardoso L, Silva-Neto MAC, Souza-Gomes M, Sterkel M, Taracena ML, Tojo M, Tu ZJ, Tubio JMC, Ursic-Bedoya R, Venancio TM, Walter-Nuno AB, Wilson D, Warren WC, Wilson RK, Huebner E, Dotson EM, Oliveira PL. Proceedings of the National Academy of Sciences of the United States of America; 112(48):14936-14941.
Date published:
December 1, 2015
Featured in this article:
Wes Warren.
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The genome of the vervet (Chlorocebus æthiops sabæus). Warren WC, Jasinska AJ, García-Pérez R, Svardal H, Tomlinson C, Rocchi M, Archidiacono N, Capozzi O, Minx P, Montague MJ, Kyung K, Hillier LW, Kremitzki M, Graves T, Chiang C, Hughes J, Tran N, Huang Y, Ramensky V, Choi O-W, Jung YJ, Schmitt CA, Juretic N, Wasserscheid J, Turner TR, Wiseman RW, Tuscher JJ, Karl JA, Schmitz JE, Zahn R, O'Connor DH, Redmond E, Nisbett A, Jacquelin B, Müller-Trutwin MC, Brenchley JM, Dione M, Antonio M, Schroth GP, Kaplan JR, Jorgensen MJ, Thomas GWC, Hahn MW, Raney BJ, Aken B, Nag R, Schmitz J, Churakov G, Noll A, Stanyon R, Webb D, Thibaud-Nissen F, Nordborg M, Marques-Bonet T, Dewar K, Weinstock GM, Wilson RK, Freimer NB. Genome Research; 25(12):1921-1933.
Date published:
December 1, 2015
Featured in this article:
Wes Warren.
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Whole Body Melanoma Transcriptome Response in Medaka. Schartl M, Shen Y, Maurus K, Walter R, Tomlinson C, Wilson RK, Postlethwait J, Warren WC. PLoS ONE; 10(12):0143057.
Date published:
December 1, 2015
Featured in this article:
Wes Warren.
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Seed filling in domesticated maize and rice depends on SWEET-mediated hexose transport. Sosso D, Luo D, Li Q-B, Sasse J, Yang J, Gendrot G, Suzuki M, Koch KE, McCarty DR, Chourey PS, Rogowsky PM, Ross-Ibarra J, Yang B, Frommer WB. Nature Genetics; 47(12):1489-1493.
Date published:
December 1, 2015
Featured in this article:
Bing Yang.
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Identification and analysis of divergent immune gene families within the Tasmanian devil genome. Morris KM, Cheng Y, Warren W, Papenfuss AT, Belov K. BMC Genomics; 16(1):1017.
Date published:
November 26, 2015
Featured in this article:
Wes Warren.
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A Bayesian model for detection of high-order interactions among genetic variants in genome-wide association studies. Wang J, Joshi T, Valliyodan B, Shi H, Liang Y, Nguyen HT, Zhang J, Xu D. BMC Genomics; 16(1):1011.
Date published:
November 25, 2015
Featured in this article:
Trupti Joshi,
Dong Xu.
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Xyloglucan, galactomannan, glucuronoxylan, and rhamnogalacturonan I do not have identical structures in soybean root and root hair cell walls. Muszyński A, O'Neill MA, Ramasamy E, Pattathil S, Avci U, Peña MJ, Libault M, Hossain MS, Brechenmacher L, York WS, Barbosa RM, Hahn MG, Stacey G, Carlson RW. Planta; 242(5):1123-1138.
Date published:
November 22, 2015
Featured in this article:
Gary Stacey.
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Characterizing the murine leukemia virus envelope glycoprotein membrane-spanning domain for its roles in interface alignment and fusogenicity. Salamango DJ, Johnson MC. Journal of Virology; 89(24):12492-12500.
Date published:
November 17, 2015
Featured in this article:
Marc Johnson.
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Autonomous requirements of the Menkes disease protein in the nervous system. Hodgkinson VL, Zhu S, Wang Y, Ladomersky E, Nickelson K, Weisman GA, Lee J, Gitlin JD, Petris MJ. American Journal of Physiology - Cell Physiology; 309(10):660-668.
Date published:
November 15, 2015
Featured in this article:
Gary Weisman,
Michael Petris.
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Erratum to Testing the Effect of Internal Genes Derived from a Wild-Bird-Origin H9N2 Influenza A Virus on the Pathogenicity of an A/H7N9 Virus, [Cell Reports, 12, (2015) 1831-1841]. Su W, Wang C, Luo J, Zhao Y, Wu Y, Chen L, Zhao N, Li M, Xing C, Liu H, Zhang H, Chang Y-F, Li T, Ding H, Wan X, He H. Cell Reports; 13(6):1283.
Date published:
November 10, 2015
Featured in this article:
XiuFeng “Henry” Wan.
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Stem cell-soluble signals enhance multilumen formation in SMG cell clusters. Maruyama CLM, Leigh NJ, Nelson JW, McCall AD, Mellas RE, Lei P, Andreadis ST, Baker OJ. Journal of Dental Research; 94(11):1610-1617.
Date published:
November 1, 2015
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Olga Baker.
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Ultra-fast alterations in mRNA levels uncover multiple players in light stress acclimation in plants. Suzuki N, Devireddy AR, Inupakutika MA, Baxter A, Miller G, Song L, Shulaev E, Azad RK, Shulaev V, Mittler R. Plant Journal; 84(4):760-772.
Date published:
November 1, 2015
Featured in this article:
Ron Mittler.
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Evolution of Asparagus L. (Asparagaceae): Out-of-South-Africa and multiple origins of sexual dimorphism. Norup MF, Petersen G, Burrows S, Bouchenak-Khelladi Y, Leebens-Mack J, Pires JC, Linder HP, Seberg O. Molecular Phylogenetics and Evolution; 92:25-44.
Date published:
November 1, 2015
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.
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Comparative analysis of the drought-responsive transcriptome in soybean lines contrasting for canopy wilting. Prince SJ, Joshi T, Mutava RN, Syed N, Joao Vitor MDS, Patil G, Song L, Wang J, Lin L, Chen W, Shannon JG, Valliyodan B, Xu D, Nguyen HT. Plant Science; 240:65-78.
Date published:
November 1, 2015
Featured in this article:
Trupti Joshi,
Dong Xu.
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Association analyses of large-scale glycan microarray data reveal novel host-specific substructures in influenza A virus binding glycans. Zhao N, Martin BE, Yang C-K, Luo F, Wan X-F. Scientific Reports; 5:15778.
Date published:
October 28, 2015
Featured in this article:
XiuFeng “Henry” Wan.
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Quercetin attenuates inflammatory responses in BV-2 microglial cells: Role of MAPKs on the Nrf2 pathway and induction of heme oxygenase-1. Sun GY, Chen Z, Jasmer KJ, Chuang DY, Gu Z, Hannink M, Simonyi A. PLoS ONE; 10(10):e0141509.
Date published:
October 27, 2015
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H3N2 Mismatch of 2014-15 Northern Hemisphere Influenza Vaccines and Head-to-head Comparison between Human and Ferret Antisera derived Antigenic Maps. Xie H, Wan X-F, Ye Z, Plant EP, Zhao Y, Xu Y, Li X, Finch C, Zhao N, Kawano T, Zoueva O, Chiang M-J, Jing X, Lin Z, Zhang A, Zhu Y. Scientific Reports; 5:15279.
Date published:
October 16, 2015
Featured in this article:
XiuFeng “Henry” Wan.
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Erratum: Carbonic anhydrases, EPF2 and a novel protease mediate CO2 control of stomatal development (Nature (2014) 513 (246-250) DOI: 10.1038/nature13452). Engineer CB, Ghassemian M, Anderson JC, Peck SC, Hu H, Schroeder JI. Nature; 526(7573):458.
Date published:
October 15, 2015
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Scott Peck.
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Cancer-related NEET proteins transfer 2Fe-2S clusters to anamorsin, a protein required for cytosolic iron-sulfur cluster biogenesis. Lipper CH, Paddock ML, Onuchic JN, Mittler R, Nechushtai R, Jennings PA. PLoS ONE; 10(10):e0139699.
Date published:
October 8, 2015
Featured in this article:
Ron Mittler.
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Identification of Soybean Proteins and Genes Differentially Regulated in Near Isogenic Lines Differing in Resistance to Aphid Infestation. Brechenmacher L, Nguyen THN, Zhang N, Jun T-H, Xu D, Mian MAR, Stacey G. Journal of Proteome Research; 14(10):4137-4146.
Date published:
October 2, 2015
Featured in this article:
Dong Xu,
Gary Stacey.
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NEDD4 Regulates PAX7 Levels Promoting Activation of the Differentiation Program in Skeletal Muscle Precursors. Bustos F, De La Vega E, Cabezas F, Thompson J, Cornelison DDW, Olwin BB, Yates JR, Olguín HC. Stem Cells; 33(10):3138-3151.
Date published:
October 1, 2015
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D Cornelison.
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4′-modified nucleoside analogs: Potent inhibitors active against entecavir-resistant hepatitis B virus. Takamatsu Y, Tanaka Y, Kohgo S, Murakami S, Singh K, Das D, Venzon DJ, Amano M, Higashi-Kuwata N, Aoki M, Delino NS, Hayashi S, Takahashi S, Sukenaga Y, Haraguchi K, Sarafianos SG, Maeda K, Mitsuya H. Hepatology; 62(4):1024-1036.
Date published:
October 1, 2015
Featured in this article:
Kamlendra Singh.
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Selective refinement and selection of near-native models in protein structure prediction. Zhang J, Barz B, Zhang J, Xu D, Kosztin I. Proteins: Structure, Function and Bioinformatics; 83(10):1823-1835.
Date published:
October 1, 2015
Featured in this article:
Dong Xu.
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Testing the Effect of Internal Genes Derived from a Wild-Bird-Origin H9N2 Influenza A Virus on the Pathogenicity of an A/H7N9 Virus. Su W, Wang C, Luo J, Zhao Y, Wu Y, Chen L, Zhao N, Li M, Xing C, Liu H, Zhang H, Chang Y-F, Li T, Ding H, Wan X, He H. Cell Reports; 12(11):1831-1841.
Date published:
September 22, 2015
Featured in this article:
XiuFeng “Henry” Wan.
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Retention projection enables accurate calculation of liquid chromatographic retention times across labs and methods. Abate-Pella D, Freund DM, Ma Y, Simón-Manso Y, Hollender J, Broeckling CD, Huhman DV, Krokhin OV, Stoll DR, Hegeman AD, Kind T, Fiehn O, Schymanski EL, Prenni JE, Sumner LW, Boswell PG. Journal of Chromatography A; 1412:43-51.
Date published:
September 18, 2015
Featured in this article:
Lloyd Sumner.
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The players may change but the game remains: Network analyses of ruminal microbiomes suggest taxonomic differences mask functional similarity. Taxis TM, Wolff S, Gregg SJ, Minton NO, Zhang C, Dai J, Schnabel RD, Taylor JF, Kerley MS, Pires JC, Lamberson WR, Conant GC. Nucleic Acids Research; 43(20):9600-9612.
Date published:
September 15, 2015
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.
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MET-XAlign: A Metabolite Cross-Alignment Tool for LC/MS-Based Comparative Metabolomics. Zhang W, Lei Z, Huhman D, Sumner LW, Zhao PX. Analytical Chemistry; 87(18):9114-9119.
Date published:
September 15, 2015
Featured in this article:
Lloyd Sumner.
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Positionally-conserved but sequence-diverged: Identification of long non-coding RNAs in the Brassicaceae and Cleomaceae. Mohammadin S, Edger PP, Pires JC, Schranz ME. BMC Plant Biology; 15(1):217.
Date published:
September 11, 2015
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.
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Erratum to: P2 receptors in atherosclerosis and postangioplasty restenosis (Purinergic Signalling, (2006), 2, 3, 471-480, DOI 10.1007/s11302-006-9015-1). Seye CI, Kong Q, Yu N, Gonzalez FA, Erb L, Weisman GA. Purinergic Signalling; 11(3):409.
Date published:
September 10, 2015
Featured in this article:
Gary Weisman.
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Cell wall protection by the Candida albicans class I chitin synthases. Preechasuth K, Anderson JC, Peck SC, Brown AJP, Gow NAR, Lenardon MD. Fungal Genetics and Biology; 82:264-276.
Date published:
September 1, 2015
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Scott Peck.
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Molecular basis of neurodegeneration and neurodevelopmental defects in Menkes disease. Zlatic S, Comstra HS, Gokhale A, Petris MJ, Faundez V. Neurobiology of Disease; 81:154-161.
Date published:
September 1, 2015
Featured in this article:
Michael Petris.
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Effect of lipo-chitooligosaccharide on early growth of C4 grass seedlings. Tanaka K, Cho S-H, Lee H, Pham AQ, Batek JM, Cui S, Qiu J, Khan SM, Joshi T, Zhang ZT, Xu D, Stacey G. Journal of Experimental Botany; 66(19):5727-5738.
Date published:
September 1, 2015
Featured in this article:
Trupti Joshi,
Dong Xu,
Gary Stacey.
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Dynamics of virus shedding and antibody responses in influenza A virus-infected feral swine. Sun H, Cunningham FL, Harris J, Xu Y, Long L-P, Hanson-Dorr K, Baroch JA, Fioranelli P, Lutman MW, Li T, Pedersen K, Schmit BS, Cooley J, Lin X, Jarman RG, Deliberto TJ, Wan X-F. Journal of General Virology; 96(9):2569-2578.
Date published:
September 1, 2015
Featured in this article:
XiuFeng “Henry” Wan.
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Developing tools for the study of molluscan immunity: Thesequencing of the genome of the eastern oyster, Crassostrea virginica. Gómez-Chiarri M, Warren WC, Guo X, Proestou D. Fish and Shellfish Immunology; 46(1):2-4.
Date published:
September 1, 2015
Featured in this article:
Wes Warren.
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Heritable site-specific mutagenesis using TALENs in maize. Char SN, Unger-Wallace E, Frame B, Briggs SA, Main M, Spalding MH, Vollbrecht E, Wang K, Yang B. Plant Biotechnology Journal; 13(7):1002-1010.
Date published:
September 1, 2015
Featured in this article:
Bing Yang.
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Metabolite profiles of essential oils in citrus peels and their taxonomic implications. Jing L, Lei Z, Zhang G, Pilon AC, Huhman DV, Xie R, Xi W, Zhou Z, Sumner LW. Metabolomics; 11(4):952-963.
Date published:
August 22, 2015
Featured in this article:
Lloyd Sumner.
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Third Report on Chicken Genes and Chromosomes 2015. Schmid M, Smith J, Burt DW, Aken BL, Antin PB, Archibald AL, Ashwell C, Blackshear PJ, Boschiero C, Brown CT, Burgess SC, Cheng HH, Chow W, Coble DJ, Cooksey A, Crooijmans RPMA, Damas J, Davis RVN, De Koning D-J, Delany ME, Derrien T, Desta TT, Dunn IC, Dunn M, Ellegren H, Eöry L, Erb I, Farré M, Fasold M, Fleming D, Flicek P, Fowler KE, Frésard L, Froman DP, Garceau V, Gardner PP, Gheyas AA, Griffin DK, Groenen MAM, Haaf T, Hanotte O, Hart A, Häsler J, Hedges SB, Hertel J, Howe K, Hubbard A, Hume DA, Kaiser P, Kedra D, Kemp SJ, Klopp C, Kniel KE, Kuo R, Lagarrigue S, Lamont SJ, Larkin DM, Lawal RA, Markland SM, McCarthy F, McCormack HA, McPherson MC, Motegi A, Muljo SA, Münsterberg A, Nag R, Nanda I, Neuberger M, Nitsche A, Notredame C, Noyes H, O'Connor R, O'Hare EA, Oler AJ, Ommeh SC, Pais H, Persia M, Pitel F, Preeyanon L, Prieto Barja P, Pritchett EM, Rhoads DD, Robinson CM, Romanov MN, Rothschild M, Roux P-F, Schmidt CJ, Schneider A-S, Schwartz MG, Searle SM, Skinner MA, Smith CA, Stadler PF, Steeves TE, Steinlein C, Sun L, Takata M, Ulitsky I, Wang Q, Wang Y, Warren WC, Wood JMD, Wragg D, Zhou H. Cytogenetic and Genome Research; 145(2):78-179.
Date published:
August 20, 2015
Featured in this article:
Wes Warren.
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Response to Hron et al. Lovell PV, Wirthlin M, Carbone L, Warren WC, Mello CV. Genome Biology; 16(1):165.
Date published:
August 18, 2015
Featured in this article:
Wes Warren.
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Phylogeny and photosynthesis of the grass tribe Paniceae. Washburn JD, Schnable JC, Davidse G, Pires JC. American Journal of Botany; 102(9):1493-1505.
Date published:
August 15, 2015
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.
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Soybean transcription factor ORFeome associated with drought resistance: A valuable resource to accelerate research on abiotic stress resistance. Chai C, Wang Y, Joshi T, Valliyodan B, Prince S, Michel L, Xu D, Nguyen HT. BMC Genomics; 16(1):596.
Date published:
August 13, 2015
Featured in this article:
Trupti Joshi,
Dong Xu.
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Joint MiRNA/mRNA expression profiling reveals changes consistent with development of dysfunctional corpus luteum after weight gain. Bradford AP, Jones K, Kechris K, Chosich J, Montague M, Warren WC, May MC, Al-Safi Z, Kuokkanen S, Appt SE, Polotsky AJ. PLoS ONE; 10(8):e0135163.
Date published:
August 10, 2015
Featured in this article:
Wes Warren.
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Identification of microRNAs and their mRNA targets during soybean nodule development: Functional analysis of the role of miR393j-3p in soybean nodulation. Yan Z, Hossain MS, Arikit S, Valdés-López O, Zhai J, Wang J, Libault M, Ji T, Qiu L, Meyers BC, Stacey G. New Phytologist; 207(3):748-759.
Date published:
August 1, 2015
Featured in this article:
Gary Stacey.
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A laser ablation ICP-MS based method for multiplexed immunoblot analysis: Applications to manganese-dependent protein dynamics of photosystem II in barley (Hordeum vulgare L.). De Bang TC, Peterson J, Pedas PR, Rogowska-Wrzesinska A, Jensen ON, Schjoerring JK, Jensen PE, Thelen JJ, Husted S. Plant Journal; 83(3):555-565.
Date published:
August 1, 2015
Featured in this article:
Jay Thelen.
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Error-prone pcr-based mutagenesis strategy for rapidly generating high-yield influenza vaccine candidates. Ye J, Wen F, Xu Y, Zhao N, Long L, Sun H, Yang J, Cooley J, Todd Pharr G, Webby R, Wan X-F. Virology; 482:234-243.
Date published:
August 1, 2015
Featured in this article:
XiuFeng “Henry” Wan.
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Erratum: Retrophylogenomics Place Tarsiers on the Evolutionary Branch of Anthropoids (Scientific Reports (2015) 3:(1756) 10.1038/srep01756). Hartig G, Churakov G, Warren WC, Brosius J, Makałowski W, Schmitz J. Scientific Reports; 5:12590.
Date published:
July 28, 2015
Featured in this article:
Wes Warren.
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Construction of an Ultrahigh Pressure Liquid Chromatography-Tandem Mass Spectral Library of Plant Natural Products and Comparative Spectral Analyses. Lei Z, Jing L, Qiu F, Zhang H, Huhman D, Zhou Z, Sumner LW. Analytical Chemistry; 87(14):7373-7381.
Date published:
July 21, 2015
Featured in this article:
Lloyd Sumner.
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Astrocytes influence the severity of spinal muscular atrophy. Rindt H, Feng Z, Mazzasette C, Glascock JJ, Valdivia D, Pyles N, Crawford TO, Swoboda KJ, Patitucci TN, Ebert AD, Sumner CJ, Ko C-P, Lorson CL. Human Molecular Genetics; 24(14):4094-4102.
Date published:
July 15, 2015
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Christian Lorson.
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Resolving deep relationships of PACMAD grasses: a phylogenomic approach. Cotton JL, Wysocki WP, Clark LG, Kelchner SA, Pires JC, Edger PP, Mayfield-Jones D, Duvall MR. BMC Plant Biology; 15:178.
Date published:
July 11, 2015
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Soybean (Glycine max) SWEET gene family: Insights through comparative genomics, transcriptome profiling and whole genome re-sequence analysis. Patil G, Valliyodan B, Deshmukh R, Prince S, Nicander B, Zhao M, Sonah H, Song L, Lin L, Chaudhary J, Liu Y, Joshi T, Xu D, Nguyen HT. BMC Genomics; 16(1):520.
Date published:
July 11, 2015
Featured in this article:
Trupti Joshi,
Dong Xu.
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The butterfly plant arms-race escalated by gene and genome duplications. Edger PP, Heidel-Fischer HM, Bekaert M, Rota J, Glöckner G, Platts AE, Heckel DG, Der JP, Wafula EK, Tang M, Hofberger JA, Smithson A, Hall JC, Blanchette M, Bureau TE, Wright SI, DePamphilis CW, Schranz ME, Barker MS, Conant GC, Wahlberg N, Vogel H, Pires JC, Wheat CW, Berenbaum MR. Proceedings of the National Academy of Sciences of the United States of America; 112(27):8362-8366.
Date published:
July 7, 2015
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Biodiversity Comparison among Phylogenetic Diversity Metrics and between Three North American Prairies. Roxanne Kellar P, Ahrendsen DL, Aust SK, Jones AR, Pires JC. Applications in Plant Sciences; 3(7):8.
Date published:
July 1, 2015
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Phylogenetics, divergence times and diversification from three genomic partitions in monocots. Hertweck KL, Kinney MS, Stuart SA, Maurin O, Mathews S, Chase MW, Gandolfo MA, Pires JC. Bontanical Journal of the Linnean Society; 178(3):375-393.
Date published:
July 1, 2015
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Physical Mapping and Refinement of the Painted Turtle Genome (Chrysemys picta) Inform Amniote Genome Evolution and Challenge Turtle-Bird Chromosomal Conservation. Badenhorst D, Hillier LW, Literman R, Montiel EE, Radhakrishnan S, Shen Y, Minx P, Janes DE, Warren WC, Edwards SV, Valenzuela N. Genome Biology and Evolution; 7(7):2038-2050.
Date published:
July 1, 2015
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Wes Warren.
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Guest Editors Introduction to the Special Issue on Software and Databases. Xu D, Huang K, Schmidt J. IEEE/ACM Transactions on Computational Biology and Bioinformatics; 12(4):793-794.
Date published:
July 1, 2015
Featured in this article:
Dong Xu.
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Identification of quantitative trait loci underlying resistance to southern root-knot and reniform nematodes in soybean accession PI 567516C. Jiao Y, Vuong TD, Liu Y, Li Z, Noe J, Robbins RT, Joshi T, Xu D, Shannon JG, Nguyen HT. Molecular Breeding; 35(6):131.
Date published:
June 26, 2015
Featured in this article:
Trupti Joshi,
Dong Xu.
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The human epilepsy mutation GABRG2(Q390X) causes chronic subunit accumulation and neurodegeneration. Kang J-Q, Shen W, Zhou C, Xu D, Macdonald RL. Nature Neuroscience; 18(7):988-996.
Date published:
June 25, 2015
Featured in this article:
Dong Xu.
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Genome-wide expression analysis of soybean NF-Y genes reveals potential function in development and drought response. Quach TN, Nguyen HTM, Valliyodan B, Joshi T, Xu D, Nguyen HT. Molecular Genetics and Genomics; 290(3):1095-1115.
Date published:
June 23, 2015
Featured in this article:
Trupti Joshi,
Dong Xu.
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Sequencing strategies and characterization of 721 vervet monkey genomes for future genetic analyses of medically relevant traits. Huang YS, Ramensky V, Service SK, Jasinska AJ, Jung Y, Choi O-W, Cantor RM, Juretic N, Wasserscheid J, Kaplan JR, Jorgensen MJ, Dyer TD, Dewer K, Blangero J, Wilson RK, Warren W, Weinstock GM, Freimer NB. BMC Biology; 13(1):41.
Date published:
June 20, 2015
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Wes Warren.
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Analysis of the siRNA-mediated gene silencing process targeting three homologous genes controlling soybean seed oil quality. Lu S, Yin X, Spollen W, Zhang N, Xu D, Schoelz J, Bilyeu K, Zhang ZJ. PLoS ONE; 10(6):e0129010.
Date published:
June 10, 2015
Featured in this article:
Dong Xu.
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Disruption of parenting behaviors in California mice, a monogamous rodent species, by endocrine disrupting chemicals. Johnson SA, Javurek AB, Painter MS, Peritore MP, Ellersieck MR, Roberts RM, Rosenfeld CS. PLoS ONE; 10(6):e0126284.
Date published:
June 3, 2015
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Does plant immunity play a critical role during initiation of the legume-rhizobium symbiosis?. Tóth K, Stacey G. Frontiers in Plant Science; 6(June):401.
Date published:
June 2, 2015
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Gary Stacey.
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Targeted disruption of CD1d prevents NKT cell development in pigs. Yang G, Artiaga BL, Hackmann TJ, Samuel MS, Walters EM, Salek-Ardakani S, Driver JP. Mammalian Genome; 26(5-6):264-270.
Date published:
June 2, 2015
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John Driver.
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Structure-function analysis of NEET proteins uncovers their role as key regulators of iron and ROS homeostasis in health and disease. Tamir S, Paddock ML, Darash-Yahana-Baram M, Holt SH, Sohn YS, Agranat L, Michaeli D, Stofleth JT, Lipper CH, Morcos F, Cabantchik IZ, Onuchic JN, Jennings PA, Mittler R, Nechushtai R. Biochimica et Biophysica Acta - Molecular Cell Research; 1853(6):1294-1315.
Date published:
June 1, 2015
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Ron Mittler.
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X-linked spinal muscular atrophy in mice caused by autonomous loss of ATP7A in the motor neuron. Hodgkinson VL, Dale JM, Garcia ML, Weisman GA, Lee J, Gitlin JD, Petris MJ. Journal of Pathology; 236(2):241-250.
Date published:
June 1, 2015
Featured in this article:
Gary Weisman,
Michael Petris.
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Copper tolerance and virulence in bacteria. Ladomersky E, Petris MJ. Metallomics; 7(6):957-964.
Date published:
June 1, 2015
Featured in this article:
Michael Petris.
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Elucidating steroid alkaloid biosynthesis in Veratrum californicum: Production of verazine in Sf9 cells. Augustin MM, Ruzicka DR, Shukla AK, Augustin JM, Starks CM, O'Neil-Johnson M, McKain MR, Evans BS, Barrett MD, Smithson A, Wong GK-S, Deyholos MK, Edger PP, Pires JC, Leebens-Mack JH, Mann DA, Kutchan TM. Plant Journal; 82(6):991-1003.
Date published:
June 1, 2015
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Effects of post-weaning diet on metabolic parameters and DNA methylation status of the cryptic promoter in the Avy allele of viable yellow mice. Warzak DA, Johnson SA, Ellersieck MR, Roberts RM, ,Zhang X, Ho S-M, Rosenfeld CS. Journal of Nutritional Biochemistry; 26(6):667-674.
Date published:
June 1, 2015
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System approaches to study root hairs as a single cell plant model: Current status and future perspectives. Hossain MS, Joshi T, Stacey G. Frontiers in Plant Science; 6(MAY):1-7.
Date published:
May 19, 2015
Featured in this article:
Trupti Joshi,
Gary Stacey.
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Investigation of the chemical interface in the soybean-aphid and rice-bacteria interactions using maldi-mass spectrometry imaging. Klien AT, Yagnik GB, Hohenstein JD, Ji Z, Zi J, Reichert MD, Macintosh GC, Yang B, Peters RJ, Vela J, Lee YJ. Analytical Chemistry; 87(10):5294-5301.
Date published:
May 19, 2015
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Bing Yang.
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Livestock models for exploiting the promise of pluripotent stem cells. Michael Roberts R, Yuan Y, Genovese N, Ezashi T. ILAR Journal; 56(1):74-82.
Date published:
May 19, 2015
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Genome-wide analysis of mutations in a dwarf soybean mutant induced by fast neutron bombardment. Hwang WJ, Kim MY, Kang YJ, Shim S, Stacey MG, Stacey G, Lee S-H. Euphytica; 203(2):399-408.
Date published:
May 18, 2015
Featured in this article:
Minviluz (Bing) Stacey,
Gary Stacey.
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Characterization of Angiogenesis and Lymphangiogenesis in Human Minor Salivary Glands with Sjögren’s Syndrome. McCall AD, Baker OJ. Journal of Histochemistry and Cytochemistry; 63(5):340-349.
Date published:
May 5, 2015
Featured in this article:
Olga Baker.
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Heightened potency of human pluripotent stem cell lines created by transient BMP4 exposure. Yang Y, Adachi K, Sheridan MA, Alexenko AP, Schust DJ, Schulz LC, Ezashi T, Roberts RM. Proceedings of the National Academy of Sciences of the United States of America; 112(18):E2337-E2346.
Date published:
May 5, 2015
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Plastid phylogenomics of the cool-season grass subfamily: Clarification of relationships among early-diverging tribes. Saarela JM, Wysocki WP, Barrett CF, Soreng RJ, Davis JI, Clark LG, Kelchner SA, Pires JC, Edger PP, Mayfield DR, Duvall MR. AoB PLANTS; 7(1).
Date published:
May 2, 2015
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Increased Expression of TGF-β Signaling Components in a Mouse Model of Fibrosis Induced by Submandibular Gland Duct Ligation. Woods LT, Camden JM, El-Sayed FG, Khalafalla MG, Petris MJ, Erb L, Weisman GA. PLoS ONE; 10(5):e0123641.
Date published:
May 1, 2015
Featured in this article:
Michael Petris,
Gary Weisman.
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Gene targeting by the TAL effector PthXo2 reveals cryptic resistance gene for bacterial blight of rice. Zhou J, Peng Z, Long J, Sosso D, Liu B, Eom J-S, Huang S, Liu S, Vera Cruz C, Frommer WB, White FF, Yang B. Plant Journal; 82(4):632-643.
Date published:
May 1, 2015
Featured in this article:
Bing Yang.
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Phosphorylation site prediction in plants. Yao Q, Schulze WX, Xu D. Plant Phosphoproteomics: Methods and Protocols; 217-228.
Date published:
April 30, 2015
Featured in this article:
Dong Xu.
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From gigabyte to kilobyte: A bioinformatics protocol for mining large RNA-Seq transcriptomics data. Li J, Hou J, Sun L, Wilkins JM, Lu Y, Niederhuth CE, Merideth BR, Mawhinney TP, Mossine VV, Greenlief CM, Walker JC, Folk WR, Hannink M, Lubahn DB, Birchler JA, Cheng J. PLoS ONE; 10(4):e0125000.
Date published:
April 22, 2015
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Genetic stability analysis in somatic embryo regeneration of erica carnea by RAPD and ISSR markers. Wang J-N, Li J-H, Qi X, Yao P-J, Xu D. Zhiwu Shengli Xuebao/Plant Physiology Journal; 51(4):448-494.
Date published:
April 20, 2015
Featured in this article:
Dong Xu.
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The SMN structure reveals its crucial role in snRNP assembly (RETRACTED). Seng CO, Magee C, Young PJ, Lorson CL, Allen JP. Human Molecular Genetics; 24(8):2138-2146.
Date published:
April 15, 2015
Featured in this article:
Christian Lorson.
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Comparative proteomic analysis of developing rhizomes of the ancient vascular plant equisetum hyemale and different monocot species. Salvato F, Balbuena TS, Nelson W, Rao RSP, He R, Soderlund CA, Gand DR, Thelen JJ. Journal of Proteome Research; 14(4):1779-1791.
Date published:
April 3, 2015
Featured in this article:
Jay Thelen.
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An association analysis between psychophysical characteristics and genome-wide gene expression changes in human adaptation to the extreme climate at the Antarctic Dome Argus. Xu C, Ju X, Song D, Huang F, Tang D, Zou Z, Zhang C, Joshi T, Jia L, Xu W, Xu K-F, Wang Q, Xiong Y, Guo Z, Chen X, Huang F, Xu J, Zhong Y, Zhu Y, Peng Y, Wang L, Zhang X, Jiang R, Li D, Jiang T, Xu D, Jiang C. Molecular Psychiatry; 20(4):536-544.
Date published:
April 2, 2015
Featured in this article:
Trupti Joshi,
Dong Xu.
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Integrated metabolomics and transcriptomics reveal enhanced specialized metabolism in Medicago truncatula root border cells. Watson BS, Bedair MF, Urbanczyk-Wochniak E, Huhman DV, Yang DS, Allen SN, Li W, Tang Y, Sumner LW. Plant Physiology; 167(4):1699-1716.
Date published:
April 1, 2015
Featured in this article:
Lloyd Sumner.
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Patterns of metabolite changes identified from large-scale gene perturbations in arabidopsis using a genome-scale metabolic network. Kim T, Dreher K, Nilo-Poyanco R, Lee I, Fiehn O, Lange BM, Nikolau BJ, Sumner L, Welti R, Wurtele ES, Rhee SY. Plant Physiology; 167(4):1685-1698.
Date published:
April 1, 2015
Featured in this article:
Lloyd Sumner.
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The Fe-S cluster-containing NEET proteins mitoNEET and NAF-1 as chemotherapeutic targets in breast cancer. Bai F, Morcos F, Sohn Y-S, Darash-Yahana M, Rezende CO, Lipper CH, Paddock ML, Song L, Luo Y, Holt SH, Tamir S, Theodorakis EA, Jennings PA, Onuchic JN, Mittler R, Nechushtai R. Proceedings of the National Academy of Sciences of the United States of America; 112(12):3698-3703.
Date published:
March 24, 2015
Featured in this article:
Ron Mittler.
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Omeprazole, a gastric proton pump inhibitor, inhibits melanogenesis by blocking ATP7A trafficking. Matsui MS, Petris MJ, Niki Y, Karaman-Jurukovska N, Muizzuddin N, Ichihashi M, Yarosh DB. Journal of Investigative Dermatology; 135(3):834-841.
Date published:
March 12, 2015
Featured in this article:
Michael Petris.
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FASTAptamer: A bioinformatic toolkit for high-throughput sequence analysis of combinatorial selections. Alam KK, Chang JL, Burke DH. Molecular Therapy - Nucleic Acids; 4(3):e230.
Date published:
March 1, 2015
Featured in this article:
Donald Burke-Agüero.
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Rhizobium-legume symbioses: The crucial role of plant immunity. Gourion B, Berrabah F, Ratet P, Stacey G. Trends in Plant Science; 20(3):186-194.
Date published:
March 1, 2015
Featured in this article:
Gary Stacey.
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Robust biological nitrogen fixation in a model grass-bacterial association. Pankievicz VCS, Do Amaral FP, Santos KFDN, Agtuca B, Xu Y, Schueller MJ, Arisi ACM, Steffens MBR, De Souza EM, Pedrosa FO, Stacey G, Ferrieri RA. Plant Journal; 81(6):907-919.
Date published:
March 1, 2015
Featured in this article:
Gary Stacey.
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Identification of the source of A (H10N8) virus causing human infection. Xu Y, Cao H, Liu H, Sun H, Martin B, Zhao Y, Wang Q, Deng G, Xue J, Zong Y, Zhu J, Wen F, Long L-P, Wong S-S, Zhao N, Fu X, Liao M, Hu G, Webby R, Gao GF, Wan X-F. Infection, Genetics and Evolution; 30:159-163.
Date published:
March 1, 2015
Featured in this article:
XiuFeng “Henry” Wan.
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Genetic variants in root architecture-related genes in a Glycine soja accession, a potential resource to improve cultivated soybean. Prince SJ, Song L, Qiu D, Maldonado dos Santos JV, Chai C, Joshi T, Patil G, Valliyodan B, Vuong TD, Murphy M, Krampis K, Tucker DM, Biyashev R, Dorrance AE, Maroof MAS, Xu D, Shannon JG, Nguyen HT. BMC Genomics; 16(1):132.
Date published:
February 25, 2015
Featured in this article:
Trupti Joshi,
Dong Xu.
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NFIB regulates embryonic development of submandibular glands. Mellas RE, Kim H, Osinski J, Sadibasic S, Gronostajski RM, Cho M, Baker OJ. Journal of Dental Research; 94(2):312-319.
Date published:
February 22, 2015
Featured in this article:
Olga Baker.
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The Mitochondrial Metallochaperone SCO1 Is Required to Sustain Expression of the High-Affinity Copper Transporter CTR1 and Preserve Copper Homeostasis. Hlynialuk CJ, Ling B, Baker ZN, Cobine PA, Yu LD, Boulet A, Wai T, Hossain A, ElZawily AM, McFie PJ, Stone SJ, Diaz F, Moraes CT, Viswanathan D, Petris MJ, Leary SC. Cell Reports; 10(6):933-943.
Date published:
February 17, 2015
Featured in this article:
Michael Petris.
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XA23 Is an executor r protein and confers broad-spectrum disease resistance in rice. Wang C, Zhang X, Fan Y, Gao Y, Zhu Q, Zheng C, Qin T, Li Y, Che J, Zhang M, Yang B, Liu Y, Zhao K. Molecular Plant; 8(2):290-302.
Date published:
February 2, 2015
Featured in this article:
Bing Yang.
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Modern plant metabolomics: Advanced natural product gene discoveries, improved technologies, and future prospects. Sumner LW, Lei Z, Nikolau BJ, Saito K. Natural Product Reports; 32(2):212-229.
Date published:
February 1, 2015
Featured in this article:
Lloyd Sumner.
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Detection of influenza antigenic variants directly from clinical samples using polyclonal antibody based proximity ligation assays. Martin BE, Jia K, Sun H, Ye J, Hall C, Ware D, Wan X-F. Virology; 476:151-158.
Date published:
February 1, 2015
Featured in this article:
XiuFeng “Henry” Wan.
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Zonula Occludens-1, Occludin and E-cadherin Expression and Organization in Salivary Glands with Sjögren’s Syndrome. Mellas RE, Leigh NJ, Nelson JW, McCall AD, Baker OJ. Journal of Histochemistry and Cytochemistry; 63(1):45-56.
Date published:
January 30, 2015
Featured in this article:
Olga Baker.
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Development of an isoform-specific tandem mass spectrometry assay for absolute quantitation of maize lipid transfer proteins. Stevenson SE, McClain S, Thelen JJ. Journal of Agricultural and Food Chemistry; 63(3):821-828.
Date published:
January 28, 2015
Featured in this article:
Jay Thelen.
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The SCAR/WAVE complex polarizes PAN receptors and promotes division asymmetry in maize. Facette MR, Park Y, Sutimantanapi D, Luo A, Cartwright HN, Yang B, Bennett EJ, Sylvester AW, Smith LG. Nature Plants; 1:14024.
Date published:
January 26, 2015
Featured in this article:
Bing Yang.
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The roles of ROS and ABA in systemic acquired acclimation. Mittler R, Blumwald E. Plant Cell; 27(1):64-70.
Date published:
January 20, 2015
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Ron Mittler.
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Identification and evaluation of quantitative trait loci underlying resistance to multiple HG types of soybean cyst nematode in soybean PI 437655. Jiao Y, Vuong TD, Liu Y, Meinhardt C, Liu Y, Joshi T, Cregan PB, Xu D, Shannon JG, Nguyen HT. Theoretical and Applied Genetics; 128(1):15-23.
Date published:
January 17, 2015
Featured in this article:
Trupti Joshi,
Dong Xu.
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Gene therapy in spinal muscular atrophy (SMA) models using intracerebroventricular injection into neonatal mice. Shababi M, Osman EY, Lorson CL. Neuromethods; 98:297-320.
Date published:
January 13, 2015
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Christian Lorson.
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CODAS syndrome is associated with mutations of LONP1, encoding mitochondrial AAA+ lon protease. Strauss KA, Jinks RN, Puffenberger EG, Venkatesh S, Singh K, Cheng I, Mikita N, Thilagavathi J, Lee J, Sarafianos S, Benkert A, Koehler A. American Journal of Human Genetics; 96(1):121-135.
Date published:
January 8, 2015
Featured in this article:
Kamlendra Singh.
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The application of synthetic biology to elucidation of plant mono-, sesqui-, and diterpenoid metabolism. Kitaoka N, Lu X, Yang B, Peters RJ. Molecular Plant; 8(1):6-16.
Date published:
January 5, 2015
Featured in this article:
Bing Yang.
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Unreduced gametes: Meiotic mishap or evolutionary mechanism?. Mason AS, Pires JC. Trends in Genetics; 31(1):5-10.
Date published:
January 1, 2015
Featured in this article:
.
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Multifunctionality of a picornavirus polymerase domain: Nuclear localization signal and nucleotide recognition. Ferrer-Octa C, De La Higuera I, Caridi F, Sánchez-Aparicio MT, Moreno E, Perales C, Singh K, Sarafianos SG, Sobrino F, Domingo E, Verdaguer N. Journal of Virology; 89(13):6848-6859.
Date published:
January 1, 2015
Featured in this article:
Kamlendra Singh.
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Structural basis of clade-specific HIV-1 neutralization by humanized anti-V3 monoclonal antibody KD-247. Kirby KA, Ong YT, Hachiya A, Laughlin TG, Chiang LA, Pan Y, Moran JL, Marchand B, Singh K, Gallazzi F, Quinn TP, Yoshimura K, Murakami T, Matsushita S, Sarafianos SG. FASEB Journal; 29(1):70-80.
Date published:
January 1, 2015
Featured in this article:
Kamlendra Singh.
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Phytic acid and inorganic phosphate composition in soybean lines with independent IPK1 mutations. Vincent JA, Stacey M, Stacey G, Bilyeu KD. Plant Genome; 8(1).
Date published:
January 1, 2015
Featured in this article:
Minviluz (Bing) Stacey,
Gary Stacey.
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DNA microarray-based identification of genes regulated by NtrC in Bradyrhizobium japonicum. Franck WL, Qiu J, Lee H-I, Chang W-S, Stacey G. Applied and Environmental Microbiology; 81(16):5299-5308.
Date published:
January 1, 2015
Featured in this article:
Gary Stacey.
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Role of Ectoapyrases in Nodulation. Tanaka K, Tóth K, Stacey G. Biological Nitrogen Fixation; 2-2:517-524.
Date published:
January 1, 2015
Featured in this article:
Gary Stacey.
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Convergent signaling pathways—interaction between methionine oxidation and serine/threonine/tyrosine O-phosphorylation. Rao RSP, Møller IM, Thelen JJ, Miernyk JA. Cell Stress and Chaperones; 20(1):15-21.
Date published:
January 1, 2015
Featured in this article:
Jay Thelen.
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Proteomic analysis of Mycoplasma gallisepticum vaccine strain F. Collier SD, Branton SL, Evans JD, Leigh SA, Wan X-F, Cooksey AM, Olanrewaju HA, Pharr GT. International Journal of Poultry Science; 14(1):1-12.
Date published:
January 1, 2015
Featured in this article:
XiuFeng “Henry” Wan.
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P2Y receptors in Alzheimer’s disease. Erb L, Cao C, Ajit D, Weisman GA. Biology of the Cell; 107(1):1-21.
Date published:
January 1, 2015
Featured in this article:
Gary Weisman.
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Beneficial effects of dietary EGCG and voluntary exercise on behavior in an Alzheimer’s disease mouse model. Walker JM, Klakotskaia D, Ajit D, Weisman GA, Wood WG, Sun GY, Serfozo P, Simonyi A, Schachtman TR. Journal of Alzheimer's Disease; 44(2):561-572.
Date published:
January 1, 2015
Featured in this article:
Gary Weisman.
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PRIMEGENSw3: A web-based tool for high-throughput primer and probe design. Kushwaha G, Srivastava GP, Xu D. Methods in Molecular Biology; 1275:181-199.
Date published:
January 1, 2015
Featured in this article:
Dong Xu.
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Databases for plant phosphoproteomics. Schulze WX, Yao Q, Xu D. Methods in Molecular Biology; 1306:207-216.
Date published:
January 1, 2015
Featured in this article:
Dong Xu.
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Phosphorylation site prediction in plants. Yao Q, Schulze WX, Xu X. Methods in Molecular Biology; 1306:217-228.
Date published:
January 1, 2015
Featured in this article:
Dong Xu.
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A quick guide to CRISPR sgRNA design tools. Brazelton VA Jr, Zarecor S, Wright DA, Wang Y, Liu J, Chen K, Yang B, Lawrence-Dill CJ. GM crops & food; 6(4):266-276.
Date published:
January 1, 2015
Featured in this article:
Bing Yang.
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2014
A modified data normalization method for GC-MS-based metabolomics to minimize batch variation. Chen M, Rao RSP, Zhang Y, Zhong CX, Thelen JJ. SpringerPlus; 3(1):439.
Date published:
December 30, 2014
Featured in this article:
Jay Thelen.
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Advances in translational bioinformatics facilitate revealing the landscape of complex disease mechanisms. Yang JY, Dunker AK, Liu JS, Qin X, Arabnia HR, Yang W, Niemierko A, Chen Z, Luo Z, Wang L, Liu Y, Xu D, Deng Y, Tong W, Yang MQ. BMC Bioinformatics; 15(17):I1.
Date published:
December 16, 2014
Featured in this article:
Dong Xu.
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Identification of genes and pathways involved in kidney renal clear cell carcinoma. Yang W, Yoshigoe K, Qin X, Liu JS, Yang JY, Niemierko A, Deng Y, Liu Y, Dunker AK, Chen Z, Wang L, Xu D, Arabnia HR, Tong W, Yang MQ. BMC Bioinformatics; 15(17):S2.
Date published:
December 16, 2014
Featured in this article:
Dong Xu.
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Comparative genomics reveals insights into avian genome evolution and adaptation. Zhang G, Li C, Li Q, Li B, Larkin DM, Lee C, Storz JF, Antunes A, Greenwold MJ, Meredith RW, Ödeen A, Cui J, Zhou Q, Xu L, Pan H, Wang Z, Jin L, Zhang P, Hu H, Yang W, Hu J, Xiao J, Yang Z, Liu Y, Xie Q, Yu H, Lian J, Wen P, Zhang F, Li H, Zeng Y, Xiong Z, Liu S, Zhou L, Huang Z, An N, Wang J, Zheng Q, Xiong Y, Wang G, Wang B, Wang J, Fan Y, Da Fonseca RR, Alfaro-Núñez A, Schubert M, Orlando L, Mourier T, Howard JT, Ganapathy G, Pfenning A, Whitney O, Rivas MV, Hara E, Smith J, Farré M, Narayan J, Slavov G, Romanov MN, Borges R, Machado JP, Khan I, Springer MS, Gatesy J, Hoffmann FG, Opazo JC, Håstad O, Sawyer RH, Kim H, Kim K-W, Kim HJ, Cho S, Li N, Huang Y, Bruford MW, Zhan X, Dixon A, Bertelsen MF, Derryberry E, Warren W, Wilson RK, Li S, Ray DA, Green RE, O'Brien SJ, Griffin D, Johnson WE, Haussler D, Ryder OA, Willerslev E, Graves GR, Alström P, Fjeldså J, Mindell DP, Edwards SV, Braun EL, Rahbek C, Burt DW, Houde P, Zhang Y, Yang H, Wang J, Jarvis ED, Gilbert MTP, Wang J, Ye C, Liang S, Yan Z, Zepeda ML, Campos PF, Velazquez AMV, Samaniego JA, Avila-Arcos M, Martin MD, Barnett R, Ribeiro AM, Mello CV, Lovell PV, Almeida D, Maldonado E, Pereira J, Sunagar K, Philip S, Dominguez-Bello MG, Bunce M, Lambert D, Brumfield RT, Sheldon FH, Holmes EC, Gardner PP, Steeves TE, Stadler PF, Burge SW, Lyons E, Smith J, McCarthy F, Pitel F, Rhoads D, Froman DP. Science; 346(6215):1311-1320.
Date published:
December 12, 2014
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Wes Warren.
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Whole-genome analyses resolve early branches in the tree of life of modern birds. Jarvis ED, Mirarab S, Aberer AJ, Li B, Houde P, Li C, Ho SYW, Faircloth BC, Nabholz B, Howard JT, Suh A, Weber CC, Da Fonseca RR, Li J, Zhang F, Li H, Zhou L, Narula N, Liu L, Ganapathy G, Boussau B, Bayzid MS, Zavidovych V, Subramanian S, Gabaldón T, Capella-Gutiérrez S, Huerta-Cepas J, Rekepalli B, Munch K, Schierup M, Lindow B, Warren WC, Ray D, Green RE, Bruford MW, Zhan X, Dixon A, Li S, Li N, Huang Y, Derryberry EP, Bertelsen MF, Sheldon FH, Brumfield RT, Mello CV, Lovell PV, Wirthlin M, Schneider MPC, Prosdocimi F, Samaniego JA, Velazquez AMV, Alfaro-Núñez A, Campos PF, Petersen B, Sicheritz-Ponten T, Pas A, Bailey T, Scofield P, Bunce M, Lambert DM, Zhou Q, Perelman P, Driskell AC, Shapiro B, Xiong Z, Zeng Y, Liu S, Li Z, Liu B, Wu K, Xiao J, Yinqi X, Zheng Q, Zhang Y, Yang H, Wang J, Smeds L, Rheindt FE, Braun M, Fjeldsa J, Orlando L, Barker FK, Jønsson KA, Johnson W, Koepfli K-P, O'Brien S, Haussler D, Ryder OA, Rahbek C, Willerslev E, Graves GR, Glenn TC, McCormack J, Burt D, Ellegren H, Alström P, Edwards SV, Stamatakis A, Mindell DP, Cracaft J, Braun EL, Warnow T, Jun W, Gilbert MTP, Zhang G. Science; 346(6215):1320-1331.
Date published:
December 12, 2014
Featured in this article:
Wes Warren.
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Comparative analysis of the domestic cat genome reveals genetic signatures underlying feline biology and domestication. Montague MJ, Li G, Golfi B, Khan R, Aken BL, Searle SMJ, Minx P, Hillier LW, Koboldt DC, Davis BW, Driscoll CA, Barr CS, Blackistone K, Quilez J, Lorente-Galdos B, Marques-Bonet T, Alkan C, Thomas GWC, Hahn MW, Menotti-Raymond M, O'Brien SJ, Wilson RK, Lyons LA, Murphy WJ, Warren WC. Proceedings of the National Academy of Sciences of the United States of America; 111(48):17230-17235.
Date published:
December 2, 2014
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Wes Warren.
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Investigating the path of plastid genome degradation in an early-transitional clade of heterotrophic orchids, and implications for heterotrophic angiosperms. Barrett CF, Freudenstein JV, Li J, Mayfield-Jones DR, Perez L, Pires JC, Santos C. Molecular Biology and Evolution; 31(12):3095-3112.
Date published:
December 1, 2014
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Origin of a novel regulatory module by duplication and degeneration of an ancient plant transcription factor. Floyd SK, Ryan JG, Conway SJ, Brenner E, Burris KP, Burris JN, Chen T, Edger PP, Graham SW, Leebens-Mack JH, Pires JC, Rothfels CJ, Sigel EM, Stevenson DW, Neal Stewart C, Wong GKS, Bowman JL. Molecular Phylogenetics and Evolution; 81:159-173.
Date published:
December 1, 2014
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Single haplotype assembly of the human genome from a hydatidiform mole. Steinberg KM, Schneider VA, Graves-Lindsay TA, Fulton RS, Agarwala R, Huddleston J, Shiryev SA, Morgulis A, Surti U, Warren WC, Church DM, Eichler EE, Wilson RK. Genome Research; 24(12):2066-2076.
Date published:
December 1, 2014
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Wes Warren.
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Extensive Error in the Number of Genes Inferred from Draft Genome Assemblies. Denton JF, Lugo-Martinez J, Tucker AE, Schrider DR, Warren WC, Hahn MW. PLoS Computational Biology; 10(12).
Date published:
December 1, 2014
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Wes Warren.
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A new Hidden Markov Model for protein quality assessment using compatibility between protein sequence and structure. He Z, Ma W, Zhang J, Xu D. Tsinghua Science and Technology; 19(6):559-567.
Date published:
December 1, 2014
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Dong Xu.
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Proteomic analysis of the effects of aged garlic extract and its FruArg component on lipopolysaccharide-induced neuroinflammatory response in microglial cells. Zhou H, Qu Z, Mossine VV, Nknolise DL, Li J, Chen Z, Cheng J, Greenlief CM, Mawhinney TP, Brown PN, Fritsche KL, Hannink M, Lubahn DB, Sun GY, Gu Z. PLoS ONE; 9(11):e113531.
Date published:
November 24, 2014
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Nonadditive gene expression in polyploids. Yoo M-J, Liu X, Pires JC, Soltis PS, Soltis DE. Annual Review of Genetics; 48:485-517.
Date published:
November 23, 2014
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Adjuvant effects of therapeutic glycolipids administered to a cohort of NKT cell-diverse pigs. Artiaga BL, Whitener RL, Staples CR, Driver JP. Veterinary Immunology and Immunopathology; 162(1-2):1-13.
Date published:
November 15, 2014
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John Driver.
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Transcriptional responses of Arabidopsis thaliana to chewing and sucking insect herbivores. Appel HM, Fescemyer H, Ehlting J, Weston D, Rehrig E, Joshi T, Xu D, Bohlmann J, Schultz J. Frontiers in Plant Science; 5(November):1-20.
Date published:
November 14, 2014
Featured in this article:
Trupti Joshi,
Dong Xu.
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Sequencing the mouse y chromosome reveals convergent gene acquisition and amplification on both sex chromosomes. Soh YQS, Alföldi J, Pyntikova T, Brown LG, Graves T, Minx PJ, Fulton RS, Kremitzki C, Koutseva N, Mueller JL, Rozen S, Hughes JF, Owens E, Womack JE, Murphy WJ, Cao Q, De Jong P, Warren WC, Wilson RK, Skaletsky H, Page DC. Cell; 159(4):800-813.
Date published:
November 6, 2014
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Wes Warren.
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Comparative analysis of 11 Brassicales mitochondrial genomes and the mitochondrial transcriptome of Brassica oleracea. Grewe F, Edger PP, Keren I, Sultan L, Pires JC, Ostersetzer-Biran O, Mower JP. Mitochondrion; 19(PB):135-143.
Date published:
November 1, 2014
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Extracellular ATP, a danger signal, is recognized by DORN1 in Arabidopsis. Choi J, Tanaka K, Liang Y, Cao Y, Lee SY, Stacey G. Biochemical Journal; 463(3):429-437.
Date published:
November 1, 2014
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Gary Stacey.
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Global reprogramming of transcription and metabolism in Medicago truncatula during progressive drought and after rewatering. Zhang J-Y, Cruz De Carvalho MH, Torres-Jerez I, Kang Y, Allen SN, Huhman DV, Tang Y, Murray J, Sumner LW, Udvardi MK. Plant, Cell and Environment; 37(11):2553-2576.
Date published:
November 1, 2014
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Lloyd Sumner.
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Variation in protection of four divergent avian influenza virus vaccine seed strains against eight clade 2.2.1 and 2.2.1.1. Egyptian H5N1 high pathogenicity variants in poultry. Spackman E, Swayne DE, Pantin-Jackwood MJ, Wan X-F, Torchetti MK, Hassan M, Suarez DL, Sá e Silva M. Influenza and other Respiratory Viruses; 8(6):654-662.
Date published:
November 1, 2014
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XiuFeng “Henry” Wan.
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RNA-protein distance patterns in ribosomes reveal the mechanism of translational attenuation. Yu DM, Zhang C, Qin PW, Cornish PV, Xu D. Science China Life Sciences; 57(11):1131-1139.
Date published:
November 1, 2014
Featured in this article:
Dong Xu.
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Proposed quantitative and alphanumeric metabolite identification metrics. Sumner LW, Lei Z, Nikolau BJ, Saito K, Roessner U, Trengove R. Metabolomics; 10(6):1047-1049.
Date published:
October 30, 2014
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Lloyd Sumner.
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The cavefish genome reveals candidate genes for eye loss. McGaugh SE, Gross JB, Aken B, Blin M, Borowsky R, Chalopin D, Hinaux H, Jeffery WR, Keene A, Ma L, Minx P, Murphy D, O'Quin KE, Rétaux S, Rohner N, Searle SMJ. Stahl BA, Tabin C, Volff J-N, Yoshizawa M, Warren WC. Nature Communications; 5:5307.
Date published:
October 20, 2014
Featured in this article:
Wes Warren.
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Functions of EDS1-like and PAD4 genes in grapevine defenses against powdery mildew. Gao F, Dai R, Pike SM, Qiu W, Gassmann W. Plant Molecular Biology; 86(4-5):381-393.
Date published:
October 10, 2014
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Walter Gassmann.
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Carbonic anhydrases, EPF2 and a novel protease mediate CO2 control of stomatal development. Engineer CB, Ghassemian M, Anderson JC, Peck SC, Hu H, Schroeder JI. Nature; 513(7517):246-250.
Date published:
October 2, 2014
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Scott Peck.
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Corrigendum: Mammalian Y chromosomes retain widely expressed dosage-sensitive regulators. Bellott DW, Hughes JF, Skaletsky H, Brown LG, Pyntikova T, Cho T-J, Koutseva N, Zaghlul S, Graves T, Rock S, Kremitzki C, Fulton RS, Dugan S, Ding Y, Morton D, Khan Z, Lewis L, Buhay C, Wang Q, Watt J, Holder M, Lee S, Nazareth L, Rozen S, Muzny DM, Warren WC, Gibbs RA, Wilson RK, Page DC. Nature; 514(7520):126.
Date published:
October 2, 2014
Featured in this article:
Wes Warren.
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A tidal wave of signals: Calcium and ROS at the forefront of rapid systemic signaling. Gilroy S, Suzuki N, Miller G, Choi W-G, Toyota M, Devireddy AR, Mittler R. Trends in Plant Science; 19(10):623-630.
Date published:
October 1, 2014
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Ron Mittler.
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Interview with Ron Mittler. Mittler R. Trends in Plant Science; 19(10):611-612.
Date published:
October 1, 2014
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Ron Mittler.
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Interfacing Whispering Gallery Mode optical microresonator biosensors with the plant defense elicitor chitin. Dahmen JL, Yang Y, Greenlief CM, Stacey G, Hunt HK. Colloids and Surfaces B: Biointerfaces; 122:241-249.
Date published:
October 1, 2014
Featured in this article:
Gary Stacey.
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Use of serological and mucosal immune responses to Mycoplasma hyopneumoniae antigens P97R1, P46 and P36 in the diagnosis of infection. Feng Z-X, Bai Y, Yao J-T, Pharr GT, Wan X-F, Xiao S-B, Chi L-Z, Gan Y, Wang H-Y, Wei Y-N, Liu M-J, Xiong Q-Y, Bai F-F, Li B, Wu X-S, Shao G-Q. Veterinary Journal; 202(1):128-133.
Date published:
October 1, 2014
Featured in this article:
XiuFeng “Henry” Wan.
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Flower-visiting insects and their potential impact on transgene flow in rice. Pu D-Q, Shi M, Wu Q, Gao M-Q, Liu J-F, Ren S-P, Yang F, Tang P, Ye G-Y, Shen Z-C, He J-H, Yang D, Bu W-J, Zhang C-T, Song Q, Xu D, Strand MR, Chen X-X. Journal of Applied Ecology; 51(5):1357-1365.
Date published:
October 1, 2014
Featured in this article:
Dong Xu.
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Drug resistance in non-B subtype HIV-1: Impact of HIV-1 reverse transcriptase inhibitors. Singh K, Flores JA, Kirby KA, Neogi U, Sonnerborg A, Hachiya A, Das K, Arnold E, McArthur C, Parniak M, Sarafianos SG. Viruses; 6(9):3535-3562.
Date published:
September 24, 2014
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Kamlendra Singh.
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Corrigendum: Elephant shark genome provides unique insights into gnathostome evolution. Venkatesh B, Lee AP, Ravi V, Maurya AK, Lian MM, Swann JB, Ohta Y, Flajnik MF, Sutoh Y, Kasahara M, Hoon S, Gangu V, Roy SW, Irimia M, Korzh V, Kondrychyn I, Lim ZW, Tay B-H, Tohari S, Kong KW, Ho S, Lorente-Galdos B, Quilez J, Marques-Bonet T, Raney BJ, Ingham PW, Tay A, Hillier LW, Minx P, Boehm T, Wilson RK, Brenner S, Warren WC. Nature; 513(7519):574.
Date published:
September 24, 2014
Featured in this article:
Wes Warren.
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Differentiating enteric Escherichia coli from environmental bacteria through the putative glucosyltransferase gene (ycjM). Deng D, Zhang L, Mustapha A, Xu D, Wuliji T, Farley M, Yang J, Hua B, Liu F, Zheng G. Water Research; 61:224-231.
Date published:
September 15, 2014
Featured in this article:
Dong Xu.
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Erratum: Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome (Science (2014) 345:6199 (950-953)). Chalhoub B, Denoeud F, Liu S, Parkin IAP, Tang H, Wang X, Chiquet J, Belcram H, Tong C, Samans B, Corréa M, Da Silva C, Just J, Falentin C, Koh CS, Le Clainche I, Bernard M, Bento P, Noel B, Labadie K, Alberti A, Charles M, Arnaud D, Guo H, Daviaud C, Alamery S, Jabbari K, Zhao M, Edger PP, Chelaifa H, Tack D, Lassalle G, Mestiri I, Schnel N, Le Paslier M-C, Fan G, Renault V, Bayer PE, Golicz AA, Manoli S, Lee T-H, Thi VHD, Chalabi S, Hu Q, Fan C, Tollenaere R, Lu Y, Battail C, Shen J, Sidebottom CHD, Wang X, Canaguier A, Chauveau A, Bérard A, Deniot G, Guan M, Liu Z, Sun F, Lim YP, Lyons E, Town CD, Bancroft I, Wang X, Meng J, Ma, J, Pires JC, King GJ, Brunel D, Delourme R, Renard M, Aury J-M, Adams KL, Batley J, Snowdon RJ, Tost J, Edwards D, Zhou Y, Hua W, Sharpe AG, Paterson AH, Guan C, Wincker P. Science; 345(6202).
Date published:
September 12, 2014
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Gibbon genome and the fast karyotype evolution of small apes. Carbone L, Alan Harris R, Gnerre S, Verramah KR, Lorente-Galdos B, Huddleston J, Meyer TJ, Herrero J, Roos C, Aken B, Anaclerio F, Archidiacono N, Baker C, Barrell D, Batzer MA, Beal K, Blancher A, Bohrson CL, Brameier M, Campbell MS, Capozzi O, Casola C, Chiatante G, Cree A, Damert A, De Jong PJ, Dumas L, Fernandez-Callejo M, Flicek P, Fuchs NV, Gut I, Gut M, Hahn MW, Hernandez-Rodriguez J, Hillier LW, Hubley R, Ianc B, Izsvák Z, Jablonski NG, Johnstone LM, Karimpour-Fard A, Konkel MK, Kostka D, Lazar NH, Lee SL, Lewis LR, Liu Y, Locke DP, Mallick S, Mendez FL, Muffato M, Nazareth LV, Nevonen KA, O'Bleness M, Ochis C, Odom DT, Pollard KS, Quilez J, Reich D, Rocchi M, Schumann GG, Searle S, Sikela JM, Skollar G, Smit A, Sonmez K, Ten Hallers B, Terhune E, Thomas GWC, Ullmer B, Ventura M, Walker JA, Wall JD, Walter L, Ward MC, Wheelan SJ, Whelan CW, White S, Wilhelm LJ, Woerner AE, Yandell M, Zhu B, Hammer MF, Marques-Bonet T, Eichler EE, Fulton L, Fronick C, Muzny DM, Warren WC, Worley KC, Rogers J, Wilson RK, Gibbs RA. Nature; 513(7517):195-201.
Date published:
September 11, 2014
Featured in this article:
Wes Warren.
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A conserved motif mediates both multimer formation and allosteric activation of phosphoglycerate mutase 5. Wilkins JM, McConnell C, Tipton PA, Hannink M. Journal of Biological Chemistry; 289(36):25137-25148.
Date published:
September 5, 2014
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Sequence-based antigenic change prediction by a sparse learning method incorporating co-evolutionary information. Yang J, Zhang T, Wan X-F. PLoS ONE; 9(9):e106660.
Date published:
September 4, 2014
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XiuFeng “Henry” Wan.
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Extracellular ATP acts as a damage-associated molecular pattern (DAMP) signal in plants. Tanaka K, Choi J, Cao Y, Stacey G. Frontiers in Plant Science; 5(SEP):446.
Date published:
September 3, 2014
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Gary Stacey.
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TIM-family proteins inhibit HIV-1 release. Li M, Ablan SD, Miao C, Zheng Y-M, Fuller MS, Rennert PD, Maury W, Johnson MC, Freed EO, Liu S-L. Proceedings of the National Academy of Sciences of the United States of America; 111(35):E3699-E3707.
Date published:
September 2, 2014
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Marc Johnson.
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Morpholino antisense oligonucleotides targeting intronic repressor Element1 improve phenotype in SMA mouse models. Osman EY, Miller MR, Robbins KL, Lombardi AM, Atkinson AK, Brehm AJ, Lorson CL. Human Molecular Genetics; 23(18):4832-4845.
Date published:
September 1, 2014
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Christian Lorson.
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Defining the therapeutic window in a severe animal model of spinal muscular atrophy. Robbins KL, Glascock JJ, Osman EY, Miller MR, Lorson CL. Human Molecular Genetics; 23(17):4559-4568.
Date published:
September 1, 2014
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Christian Lorson.
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OPT3 is a component of the iron-signaling network between leaves and roots and misregulation of OPT3 leads to an over-accumulation of cadmium in seeds. Mendoza-Cózatl DG, Xie Q, Akmakjian GZ, Jobe TO, Patel A, Stacey MG, Song L, Demoin DW, Jurisson SS, Stacey G, Schroeder JI. Molecular Plant; 7(9):1455-1469.
Date published:
September 1, 2014
Featured in this article:
David Mendoza-Cózatl,
Minviluz (Bing) Stacey,
Gary Stacey.
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Is Lys-Ne⁽ᵉᵒᵖᵉⁿ⁾-acetylation the next big thing in post-translational modifications?. Rao RSP, Thelen JJ, Miernyk JA. Trends in Plant Science; 19(9):550-553.
Date published:
September 1, 2014
Featured in this article:
Jay Thelen.
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Potency, Efficacy, and Antigenic Mapping of H7 Avian Influenza Virus Vaccines Against the 2012 H7N3 Highly Pathogenic Avian Influenza Virus from Mexico. Spackman E, Wan X-F, Kapczynski D, Xu Y, Pantin-Jackwood M, Suarez DL, Swayne D. Avian Diseases; 58(3):359-366.
Date published:
September 1, 2014
Featured in this article:
XiuFeng “Henry” Wan.
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Use of the CRISPR/Cas9 system to produce genetically engineered pigs from in vitro-derived oocytes and embryos. Whitworth KM, Lee K, Benne JA, Beaton BP, Spate LD, Murphy SL, Samuel MS, Mao J, O'Gorman C, Walters EM, Murphy CN, Driver J, Mileham A, McLaren D, Wells KD, Prather RS. Biology of Reproduction; 91(3):78.
Date published:
September 1, 2014
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John Driver.
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A multi-step comparison of short-read full plastome sequence assembly methods in grasses. Wysocki WP, Clark LG, Kelchner SA, Burke SV, Pires JC, Edger PP, Mayfield DR, Triplett JK, Columbus JT, Ingram AL, Duvall MR. Taxon; 63(4):899-910.
Date published:
August 28, 2014
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XMDFF: Molecular dynamics flexible fitting of low-resolution X-ray structures. Mcgreevy R, Singharoy A, Li Q, Zhang J, Xu D, Perozo E, Schulten K. Acta Crystallographica Section D: Biological Crystallography; 70(9):2344-2355.
Date published:
August 26, 2014
Featured in this article:
Dong Xu.
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Separation of zinc-dependent and zinc-independent events during early LPS-stimulated TLR4 signaling in macrophage cells. Wan Y, Petris MJ, Peck SC. FEBS Letters; 588(17):2928-2935.
Date published:
August 25, 2014
Featured in this article:
Michael Petris,
Scott Peck.
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Early allopolyploid evolution in the post-neolithic Brassica napus oilseed genome. Chalhoub B, Denoeud F, Liu S, Parkin IAP, Tang H, Wang X, Chiquet J, Belcram H, Tong C, Samans B, Corréa M, Da Silva C, Just J, Falentin C, Koh CS, Le Clainche I, Bernard M, Bento P, Noel B, Labadie K, Alberti A, Charles M, Arnaud D, Guo H, Daviaud C, Alamery S, Jabbari K, Zhao M, Edger PP, Chelaifa H, Tack D, Lassalle G, Mestiri I, Schnel N, Le Paslier M-C, Fan G, Renault V, Bayer PE, Golicz AA, Manoli S, Lee T-H, Thi VHD, Chalabi S, Hu Q, Fan C, Tollenaere R, Lu Y, Battail C, Shen J, Sidebottom CHD, Wang X, Canaguier A, Chauveau A, Bérard A, Deniot G, Guan M, Liu Z, Sun F, Lim YP, Lyons E, Town CD, Bancroft I, Wang X, Meng J, Ma, J, Pires JC, King GJ, Brunel D, Delourme R, Renard M, Aury J-M, Adams KL, Batley J, Snowdon RJ, Tost J, Edwards D, Zhou Y, Hua W, Sharpe AG, Paterson AH, Guan C, Wincker P. Science; 345(6199):950-953.
Date published:
August 22, 2014
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Breeding for speed. Michael Roberts R. Science; 345(6197):632.
Date published:
August 8, 2014
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In silico analysis of protein Lys-Nᵋ -acetylation in plants. Shyama Prasad Rao R, Thelen JJ, Miernyk JA. Frontiers in Plant Science; 5(AUG):381.
Date published:
August 4, 2014
Featured in this article:
Jay Thelen.
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Evaluation of SSYA10-001 as a replication inhibitor of severe acute respiratory syndrome, mouse hepatitis, and Middle East respiratory syndrome coronaviruses. Adedeji AO, Singh K, Kassim A, Coleman CM, Elliott R, Weiss SR, Frieman MB, Sarafianos SG. Antimicrobial Agents and Chemotherapy; 58(8):4894-4898.
Date published:
August 1, 2014
Featured in this article:
Kamlendra Singh.
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Extracellular ATP is a central signaling molecule in plant stress responses. Cao Y, Tanaka A, Nguyen CT, Stacey G. Current Opinion in Plant Biology; 20:82-87.
Date published:
August 1, 2014
Featured in this article:
Gary Stacey.
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The common marmoset genome provides insight into primate biology and evolution. Worley KC, Warren WC, Rogers J, Locke D, Muzny DM, Mardis ER, Weinstock GM, Tardif SD, Aagaard KM, Archidiacono N, Arul Rayan N, Batzer MA, Beal K, Brejova B, Capozzi O, Capuano SB, Casola C, Chandrabose MM, Cree A, Diep Dao M, De Jong PJ, Cruz-Herrera del Rosario R, Delehaunty KD, Dinh HH, Eichler EE, Fitzgerald S, Flicek P, Fontenot CC, Fowler RG, Ronick C, Fulton LA, Fulton RS, Gabisi RA, Gerlach D, Graves TA, Gunaratne PH, Hahn MW, Haig D, Han Y, Harris RA, Herrero J, Hillier LW, Hubley R, Hughes JF, Hume J, Jhangiani SN, Jorde LB, Joshi V, Karakor E, Konkel MK, Kosiol C, LKovar C, Kriventseva EV, Lee SL, Lewis LR, Liu Y-S, Lopez J, Lopez-Otin C, Lorente-Galdos B, Mansfield KG, Marques-Bonet T, Minx P, Misceo D, Moncrieff JS, Morgan MB, Nazareth LV, Newsham I, Nguyen NB, Okwuonu GO, Prabhakar S, Perales L, Pu L-L, Puente XS, Quesada V, Ranck MC, Raney BJ, Raveendran M, Deiros DR, Rocchi M, Rodriguez D, Ross C, Ruffier M, Ruiz SJ, Sajjadian S, Santibanez J, Schrider DR, Searle S, Skaletsky H, Soibam B, Smit AFA, Tennakoon JB, Tomaska L, Ullmer B, Vejnar CE, Ventura M, Vilella AJ, Vinar T, Vogel J-H, Walker JA, Wang Q, Warner CM, Wildman DE, Witherspoon DJ, Wright RA, Wu Y, Xiao W, Xing J, Zdobnov EM, Zhu B, Gibbs RA, Wilson RK. Nature Genetics; 46(8):850-857.
Date published:
August 1, 2014
Featured in this article:
Wes Warren.
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Diverse and divergent protein post-translational modifications in two growth stages of a natural microbial community. Li Z, Wang Y, Yao Q, Justice NB, Ahn T-H, Xu D, Hettich RL, Banfield JF, Pan C. Nature Communications; 5:4405.
Date published:
July 25, 2014
Featured in this article:
Dong Xu.
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Abnormal oxidative stress responses in fibroblasts from preeclampsia infants. Yang P, Dai A, Alexenko AP, Liu Y, Stephens AJ, Schulz LC, Schust DJ, Roberts RM, Ezashi T. PLoS ONE; 9(7):e103110.
Date published:
July 24, 2014
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Dissection of defense pathways in the grapevine-powdery mildew interaction by employing arabidopsis defense-related mutants. Qiu W, Gassmann W, Gao F, Singh K, Zhang Y. Acta Horticulturae; 1046:85-90.
Date published:
July 20, 2014
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Walter Gassmann.
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LIK1, a CERK1-interacting kinase, regulates plant immune responses in arabidopsis. Le MH, Cao Y, Zhang X-C, Stacey G. PLoS ONE; 9(7):e102245.
Date published:
July 18, 2014
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Gary Stacey.
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MMP-14 is necessary but not sufficient for invasion of three-dimensional collagen by human muscle satellite cells. Lund DK, Mouly V, Cornelison DDW. American Journal of Physiology - Cell Physiology; 307(2):C140-C149.
Date published:
July 15, 2014
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D Cornelison.
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TALEN-mediated genome editing: Prospects and perspectives. Wright DA, Li T, Yang B, Spalding MH. Biochemical Journal; 462(1):15-24.
Date published:
July 15, 2014
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Bing Yang.
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Induction of heme oxygenase I (HMOX1) by HPP-4382: A novel modulator of bach1 activity. Attucks OC, Jasmer KJ, Hannink M, Kassis J, Zhong Z, Gupta S, Victory SF, Guzel M, Polisetti DR, Andrews R, Mjalli AMM, Kostura MJ. PLoS ONE; 9(7):e101044.
Date published:
July 14, 2014
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High-coverage sequencing and annotated assemblies of the budgerigar genome. Ganapathy G, Howard JT, Ward JM, Li J, Li B, Li Y, Xiong Y, Zhang Y, Zhou S, Schwartz DC, Schatz M, Aboukhalil R, Fedrigo O, Bukovnik L, Wang T, Wray G, Rasolonjatovo I, Winer R, Knight JR, Koren S, Warren WC, Zhang G, Philippy AM, Jarvis ED. GigaScience; 3(1):11.
Date published:
July 8, 2014
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Wes Warren.
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DL-PRO: A novel deep learning method for protein model quality assessment. Nguyen SP, Shang Y, Xu D. Proceedings of the International Joint Conference on Neural Networks; 2071-2078.
Date published:
July 6, 2014
Featured in this article:
Dong Xu.
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Multi-dimensional scaling and MODELLER-based evolutionary algorithms for protein model refinement. Chen Y, Shang Y, Xu D. Proceedings of the 2014 IEEE Congress on Evolutionary Computation, CEC 2014; 1038-1045.
Date published:
July 6, 2014
Featured in this article:
Dong Xu.
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Transport of boron by the tassel-less1 aquaporin is critical for vegetative and reproductive development in maize. Durbak AR, Phillips KA, Pike S, O'Neill MA, Mares J, Gallavotti A, Malcomber ST, Gassmann W, McSteen P. Planet Cell; 26(7):2978-2995.
Date published:
July 1, 2014
Featured in this article:
Walter Gassmann,
Paula McSteen.
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Abiotic and biotic stress combinations. Suzuki N, Rivero RM, Shulaev V, Blumwald E, Mittler R. New Phytologist; 203(1):32-43.
Date published:
July 1, 2014
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Ron Mittler.
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P2Y2 nucleotide receptor activation enhances the aggregation and self-organization of dispersed salivary epithelial cells. El-Sayed FG, Camden JM, Woods LT, Khalafalla MG, Petris MJ, Erb L, Weisman GA. American Journal of Physiology - Cell Physiology; 307(1):C83-C96.
Date published:
July 1, 2014
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Michael Petris,
Gary Weisman.
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Comparative Phylogenomics Uncovers the Impact of Symbiotic Associations on Host Genome Evolution. Delaux P-M, Varala K, Edger PP, Coruzzi GM, Pires JC, Ané J-M. PLoS Genetics; 10(7):e1004487.
Date published:
July 1, 2014
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Secondary structure analyses of the nuclear rRNA internal transcribed spacers and assessment of its phylogenetic utility across the brassicaceae (mustards). Edger PP, Tang M, Bird KA, Mayfield DR, Conant G, Mummenhoff K, Koch MA, Pires JC. PLoS ONE; 9(7):e101341.
Date published:
July 1, 2014
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Genotypic variation of gene expression during the soybean innate immunity response. Valdés-López O, Khan SM, Schmitz RJ, Cui S, Qiu J, Joshi T, Xu D, Diers B, Ecker JR, Stacey G. Plant Genetic Resources: Characterisation and Utilisation; 12(SUPPL.1):S27-S30.
Date published:
July 1, 2014
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Trupti Joshi,
Dong Xu,
Gary Stacey.
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Comparative transcriptomic analysis of symbiotic Bradyrhizobium japonicum. Franck S, Franck WL, Birke SR, Chang W-S, Sangurdekar DP, Cytryn E, Joshi T, Sadowsky M, Stacey G, Xu D, Emerich DW. Symbiosis; 63(3):123-135.
Date published:
July 1, 2014
Featured in this article:
Trupti Joshi,
Gary Stacey,
Dong Xu.
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MET-COFEA: A liquid chromatography/mass spectrometry data processing platform for metabolite compound feature extraction and annotation. Zhang W, Chang J, Lei Z, Huhman D, Sumner LW, Zhao PX. Analytical Chemistry; 86(13):6245-6253.
Date published:
July 1, 2014
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Lloyd Sumner.
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Characteristics and safety assessment of intractable proteins in genetically modified crops. Bushey DF, Bannon GA, Delaney BF, Graser G, Hefford M, Jiang X, Lee TC, Madduri KM, Pariza M, Privalle LS, Ranjan R, Saab-Rincon G, Schafer BW, Thelen JJ, Zhang JXQ, Harper MS. Regulatory Toxicology and Pharmacology; 69(2):154-170.
Date published:
July 1, 2014
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Jay Thelen.
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BridgeDb app: Unifying identifier mapping services for cytoscape. Gao J, Zhang C, van Iersel M, Zhang L, Xu D, Schultz N, R Pico A. F1000Research; 3:4521.1.
Date published:
July 1, 2014
Featured in this article:
Dong Xu.
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Large chromosomal deletions and heritable small genetic changes induced by CRISPR/Cas9 in rice. Zhou H, Liu B, Weeks DP, Spalding MH, Yang B. Nucleic Acids Research; 42(17):10903-10914.
Date published:
June 27, 2014
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Bing Yang.
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Highly potent and selective ectonucleotide pyrophosphatase/ phosphodiesterase i inhibitors based on an adenosine 5′-(α or γ)-Thio-(α,β- or β,γ)-methylenetriphosphate scaffold. Nadel Y, Lecka J, Gilad Y, Ben-David G, Förster D, Reiser G, Kenigsberg S, Camden J, Weisman GA, Senderowitz H, Sévigny J, Fischer B. Journal of Medical Chemistry; 57(11):4677-4691.
Date published:
June 12, 2014
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Gary Weisman.
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Efficient CRISPR/Cas9-mediated gene editing in Arabidopsis thaliana and inheritance of modified genes in the T2 and T3 generations. Jiang W, Yang B, Weeks DP. PLoS ONE; 9(6):e99225.
Date published:
June 11, 2014
Featured in this article:
Bing Yang.
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Transcriptome and methylome profiling reveals relics of genome dominance in the mesopolyploid Brassica oleracea. Parkin IAP, Koh C, Tang H, Robinson SJ, Kagale S, Clarke WE, Town CD, Nixon J, Krishnakumar V, Bidwell SL, Denoeud F, Belcram H, Links MG, Just J, Clarke C, Bender T, Huebert T, Mason AS, Chris Pires J, Barker G, Moore J, Walley PG, Manoli S, Batley J, Edwards D, Nelson MN, Wang X, Paterson AH, King G, Bancroft I, Chalhoub B, Sharpe AG. Genome Biology; 15(6):R77.
Date published:
June 10, 2014
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The Arabidopsis immune adaptor SRFR1 interacts with TCP transcription factors that redundantly contribute to effector-triggered immunity. Kim SH, Son GH, Bhattacharjee S, Kim HJ, Nam JC, Nguyen PDT, Hong JC, Gassmann W. Plant Journal; 78(6):978-989.
Date published:
June 1, 2014
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Walter Gassmann.
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A point mutation in the [2Fe-2S] cluster binding region of the NAF-1 protein (H114C) dramatically hinders the cluster donor properties. Tamir S, Eisenberg-Domovich Y, Conlan AR, Stofleth JT, Lipper CH, Paddock ML, Mittler R, Jennings PA, Livnah O, Nechushtai R. Acta Crystallographica Section D: Biological Crystallography; 70(6):1572-1578.
Date published:
June 1, 2014
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Ron Mittler.
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Phylogenomics of the plant family Araceae. Henriquez CL, Arias T, Pires JC, Croat TB, Schaal BA. Molecular Phylogenetics and Evolution; 75(1):91-102.
Date published:
June 1, 2014
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Dosage, duplication, and diploidization: Clarifying the interplay of multiple models for duplicate gene evolution over time. Conant GC, Birchler JA, Pires JC. Current Opinion in Plant Biology; 19:91-98.
Date published:
June 1, 2014
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Metabolite identification: are you sure? And how do your peers gauge your confidence?. Creek DJ, Dunn WB, Fiehn O, Griffin JL, Hall RD, Lei Z, Mistrik R, Neumann S, Schymanski EL, Sumner LW, Trengove R, Wolfender J-L. Metabolomics; 10(3):350-353.
Date published:
June 1, 2014
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Lloyd Sumner.
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A RAD-tag genetic map for the platyfish (Xiphophorus maculatus) reveals mechanisms of karyotype evolution among teleost fish. Amores A, Catchen J, Nanda I, Warren W, Walter R, Schartl M, Postlethwait JH. Genetics; 197(2):625-641.
Date published:
June 1, 2014
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Wes Warren.
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Why do male mice spit soluble enzymes that hydrolyze extracellular nucleotides? Focus on “Prostatic acid phosphatase is the main acid phosphatase with 5′-ectonucleotidase activity in the male mouse saliva and regulates salivation”. Weisman GA. American Journal of Physiology - Cell Physiology; 306(11):C997-C998.
Date published:
June 1, 2014
Featured in this article:
Gary Weisman.
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Identifying critical transitions of complex diseases based on a single sample. Liu R, Yu X, Liu X, Xu D, Aihara K, Chen L. Bioinformatics; 30(11):1579-1586.
Date published:
June 1, 2014
Featured in this article:
Dong Xu.
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Deletions of the SACPD-C locus elevate seed stearic acid levels but also result in fatty acid and morphological alterations in nitrogen fixing nodules. Gillman JD, Stacey MG, Cui Y, Berg HR, Stacey G. BMC Plant Biology; 14(1):143.
Date published:
May 27, 2014
Featured in this article:
Minviluz (Bing) Stacey,
Gary Stacey.
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The brassica oleracea genome reveals the asymmetrical evolution of polyploid genomes. Liu S, Liu Y, Yang X, Tong C, Edwards D, Parkin IAP, Zhao M, Ma J, Yu J, Huang S, Wang X, Wang J, Lu K, Fang Z, Bancroft I, Yang T-J, Hu Q, Wang X, Yue Z, Li H, Yang L, Wu J, Zhou Q, Wang W, King GJ, Pires JC, Lu C, Wu Z, Sampath P, Wang Z, Guo H, Pan S, Yang L, Min J, Zhang D, Jin D, Li W, Belcram H, Tu J, Guan M, Qi C, Du D, Li J, Jiang L, Batley J, Sharpe AG, Park B-S, Ruperao P, Cheng F, Waminal NE, Huang Y, Dong C, Wang L, Li J, Hu Z, Zhuang M, Huang Y, Huang J, Shi J, Mei D, Liu J, Lee T-H, Wang J, Jin H, Li Z, Li X, Zhang J, Xiao L, Zhou Y, Liu Z, Liu X, Qin R, Tang X, Liu W, Wang Y, Zhang Y, Lee J, Kim HH, Denoeud F, Xu X, Liang X, Hua W, Wang X, Wang J, Chalhoub B, Paterson AH. Nature Communications; 5:3930.
Date published:
May 23, 2014
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Detection of protein phosphorylation and charge isoforms using vertical one-dimensional isoelectric focusing gels. Anderson JC, Peck SC. Methods in Molecular Biology; 1171:39-46.
Date published:
May 20, 2014
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Scott Peck.
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Engraftment of human iPS cells and allogeneic porcine cells into pigs with inactivated RAG2 and accompanying severe combined immunodeficiency. Lee K, Kwon D-N, Ezashi T, Choi Y-J, Park C, Ericsson AC, Brown AN, Samuel MS, Park K-W, Walters EM, Kim DY, Kimg J-H, Franklin CL, Murphy CN, Michael Roberts R, Prather RS, Kim J-H. Proceedings of the National Academy of Sciences of the United States of America; 111(20):7260-7265.
Date published:
May 20, 2014
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Decreased abundance of type III secretion systeminducing signals in Arabidopsis mkp1 enhances resistance against Pseudomonas syringae. Anderson JC, Wan Y, Kim Y-M, Pasa-Tolic L, Metz TO, Peck SC. Proceedings of the National Academy of Sciences of the United States of America; 111(18):6846-6851.
Date published:
May 6, 2014
Featured in this article:
Scott Peck.
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Saliva-microbe interactions and salivary gland dysfunction. Baker OJ, Edgerton M, Kramer JM, Ruhl S. Advances in dental research; 26(1):7-14.
Date published:
May 1, 2014
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Olga Baker.
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Phytochelatin-metal(loid) transport into vacuoles shows different substrate preferences in barley and Arabidopsis. Song W-Y, Mendoza-Cózatl DG, Lee Y, Schroeder JI, Ahn S-N, Lee H-S, Wicker T, Martinoia E. Plant, Cell and Environment; 37(5):1192-1201.
Date published:
May 1, 2014
Featured in this article:
David Mendoza-Cózatl.
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The combined effect of salinity and heat reveals a specific physiological, biochemical and molecular response in tomato plants. Rivero RM, Mestre TC, Mittler R, Rubio F, Garcia-Sanchez F, Martinez V. Plant, Cell and Environment; 37(5):1059-1073.
Date published:
May 1, 2014
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Ron Mittler.
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A soybean acyl carrier protein, GmACP, Is important for root nodule symbiosis. Wang J, Tóth K, Tanaka K, Nguyen CT, Yan Z, Brechenmacher L, Dahmen J, Chen M, Thelen JJ, Qiu L, Stacey G. Molecular Plant-Microbe Interactions; 27(5):415-423.
Date published:
May 1, 2014
Featured in this article:
Jay Thelen,
Gary Stacey.
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Influenza A subtype H3 viruses in feral swine, United States, 2011-2012. Feng Z, Baroch JA, Long L-P, Xu Y, Cunningham FL, Pedersen K, Lutman MW, Schmit BS, Bowman AS, DeLiberto TJ, Wan X-F. Emerging Infectious Diseases; 20(5):843-846.
Date published:
May 1, 2014
Featured in this article:
XiuFeng “Henry” Wan.
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Antigenic and genetic evolution of low-pathogenicity avian influenza viruses of subtype H7N3 following heterologous vaccination. Beato MS, Xu Y, Long L-P, Capua I, Wan X-F. Clinical and Vaccine Immunology; 21(5):603-612.
Date published:
May 1, 2014
Featured in this article:
XiuFeng “Henry” Wan.
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On the origin of SCPP genes. Venkatesh B, Lee AP, Ravi V, Maurya AK, Korzh V, Lim ZM, Ingham PW, Boehm T, Brenner S, Warren WC. Evolution and Development; 16(3):125-126.
Date published:
May 1, 2014
Featured in this article:
Wes Warren.
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The broad bacterial blight resistance of rice line CBB23 is triggered by a novel transcription activator-like (TAL) effector of Xanthomonas oryzae pv. oryzae. Wang C-L, Qin T-F, Yu H-M, Zhang X-P, Che J-Y, Gao Y, Zheng C-K, Yang B, Zhao K-J. Molecular Plant Pathology; 15(4):333-341.
Date published:
May 1, 2014
Featured in this article:
Bing Yang.
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Differentiation of trophoblast cells from human embryonic stem cells: To be or not to be?. Roberts RM, Loh KM, Amita M, Bernardo AS, Adachi K, Alexenko AP, Schust DJ, Schulz LC, Telugu BPVL, Ezashi T, Pedersen RA. Reproduction; 147(5):D1-D12.
Date published:
May 1, 2014
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Current perspectives and the future of domestication studies. Larson G, Piperno DR, Allaby RG, Purugganan MD, Andersson L, Arroyo-Kalin M, Barton L, Vigueira CC, Denham T, Dobney K, Doust AN, Gepts P, Gilbert MTP, Gremillion KJ, Lucas L, Lukens L, Marshall FB, Olsen KM, Pires JC, Richerson PJ, De Casas RR, Sanjur OI, Thomas MG, Fuller DQ. Proceedings of the National Academy of Sciences of the United States of America; 111(17):6139-6146.
Date published:
April 29, 2014
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.
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Storytelling and story testing in domestication. Gerbault P, Allaby RG, Boivin N, Rudzinski A, Grimaldi IM, Pires JC, Climer Vigueira C, Dobney K, Gremillion KJ, Barton L, Arroyo-Kalin M, Purugganan MD, De Casas RR, Bollongino R, Burger J, Fuller DQ, Bradley DG, Balding DJ, Richerson PJ, Gilbert MTP, Larson G, Thomas MG. Proceedings of the National Academy of Sciences of the United States of America; 111(17):6159-6164.
Date published:
April 29, 2014
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Erratum: Origin, inheritance, and gene regulatory consequences of genome dominance in polyploids (Proceedings of the National Academy of Sciences of the United States of America (2014) 111 (5283-5288)). Woodhouse MR, Cheng F, Pires JC, Lisch D, Freeling M, Wang X. Proceedings of the National Academy of Sciences of the United States of America; 111(17):6527.
Date published:
April 29, 2014
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Soybean ureases, but not that of bradyrhizobium japonicum, are involved in the process of soybean root nodulation. Medeiros-Silva M, Franck WL, Borba MP, Pizzato SB, Stodtman KN, Emerich DW, Stacey G, Polacco JC, Carlini CR. Journal of Agricultural and Food Chemistry; 62(16):3517-3524.
Date published:
April 23, 2014
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Gary Stacey.
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Cell cycle synchronization of leukemia inhibitory factor (LIF)-dependent porcine-induced pluripotent stem cells and the generation of cloned embryos. Yuan Y, Lee K, Park K-W, Spate LD, Prather RS, Wells KD, Roberts RM. Cell Cycle; 13(8):1265-1276.
Date published:
April 15, 2014
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Major soybean maturity gene haplotypes revealed by SNPViz analysis of 72 sequenced soybean genomes. Langewisch T, Zhang H, Vincent R, Joshi T, Xu D, Bilyeu K. PLoS ONE; 9(4):e94150.
Date published:
April 11, 2014
Featured in this article:
Trupti Joshi,
Dong Xu.
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Antifungal activity of citrus essential oils. Jing L, Lei Z, Li L, Xie R, Xi W, Guan Y, Sumner LW, Zhou Z. Journal of Agricultural and Food Chemistry; 62(14):3011-3033.
Date published:
April 9, 2014
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Lloyd Sumner.
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Integrated strategy reveals the protein interface between cancer targets Bcl-2 and NAF-1. Tamir S, Rotem-Bamberger S, Katz C, Morcos F, Hailey KL, Zuris JA, Wang C, Conlan AR, Lipper CH, Paddock ML, Mittler R, Onuchicc JN, Jennings PA, Friedler A, Nechushtai R. Proceedings of the National Academy of Sciences of the United States of America; 111(14):5177-5182.
Date published:
April 8, 2014
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Ron Mittler.
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Wnt7a stimulates myogenic stem cell motility and engraftment resulting in improved muscle strength. Bentzinger CF, von Maltzahn J, Dumont NA, Stark DA, Wang YX, Nhan K, Frenette J, Cornelison DDW, Rudnicki MA. Journal of Cell Biology; 205(1):97-111.
Date published:
April 1, 2014
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D Cornelison.
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Loss of P2Y2 nucleotide receptors enhances early pathology in the TgCRND8 mouse model of Alzheimer’s disease. Ajit D, Woods LT, Camden JM, Thebeau CN, El-Sayed FG, Greeson GW, Erb L, Petris MJ, Miller DC, Sun GY, Weisman GA. Molecular Neurobiology; 49(2):1031-1042.
Date published:
April 1, 2014
Featured in this article:
Michael Petris,
Gary Weisman.
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Multisite phosphorylation of 14-3-3 proteins by calcium-dependent protein kinases. Swatek KN, Wilson RS, Ahsan N, Tritz RL, Thelen JJ. Biochemical Journal; 459(1):15-25.
Date published:
April 1, 2014
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Jay Thelen.
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Origin, inheritance, and gene regulatory consequences of genome dominance in polyploids. Woodhouse MR, Cheng F, Pires JC, Lisch D, Freeling M, Wang X. Proceedings of the National Academy of Sciences of the United States of America; 111(14):5283-5288.
Date published:
March 24, 2014
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.
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Diverse viral glycoproteins as well as CD4 co-package into the same human immunodeficiency virus (HIV-1) particles. Gregory DA, Olinger GY, Lucas TM, Johnson MC. Retrovirology; 11(1):28.
Date published:
March 3, 2014
Featured in this article:
Marc Johnson.
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Expression of resolvin D1 biosynthetic pathways in salivary epithelium. Leigh NJ, Nelson JW, Mellas RE, Aguirre A, Baker OJ. Journal of Dental Research; 93(3):300-305.
Date published:
March 1, 2014
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Olga Baker.
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Zn-bis-glutathionate is the best co-substrate of the monomeric phytochelatin synthase from the photosynthetic heavy metal-hyperaccumulator Euglena gracilis. García-García JD, Girard L, Hernández G, Saavedra E, Pardo JP, Rodríguez-Zavala JS, Encalada R, Reyes-Prieto A, Mendoza-Cózatl DG, Moreno-Sánchez R. Metallomics; 6(3):604-616.
Date published:
March 1, 2014
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David Mendoza-Cózatl.
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ROS as key players in plant stress signalling. Baxter A, Mittler R, Suzuki N. Journal of Experimental Botany; 65(5):1229-1240.
Date published:
March 1, 2014
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Ron Mittler.
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Genome of the human hookworm Necator americanus. Tang YT, Gao X, Rosa BA, Abubucker S, Hallsworth-Pepin K, Martin J, Tyagi R, Heizer E, Zhang X, Bhonagiri-Palsikar V, Minx P, Warren WC, Wang Q, Zhan B, Hotez PJ, Sternberg PW, Dougall A, Gaze ST, Mulvenna J, Sotillo J, Ranganathan S, Rabelo EM, Wilson RK, Felgner PL, Bethony J, Hawdon JM, Gasser RB, Loukas A, Mitreva M. Nature Genetics; 46(3):261-269.
Date published:
March 1, 2014
Featured in this article:
Wes Warren.
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Erratum: The Burmese python genome reveals the molecular basis for extreme adaptation in snakes (Proceedings of the National Academy of Sciences of the United States of America (2013) 110, 51, (20645-20650) DOI: 10.1073/pnas. 1314475110). Castoe TA, De Koning APJ, Hall KT, Card DC, Schield DR, Fujita MK, Ruggiero RP, Degner JF, Daza JM, Gu W, Reyes-Velasco J, Shaney KJ, Castoe JM, Fox SE, Poole AW, Polanco D, Dobry J, Vandewege MW, Li Q, Schott RK, Kapusta A, Minx P, Feschotte C, Uetz P, Ray DA, Hoffmann FG, Bogden R, Smith EN, Chang BSW, Vonk FJ, Casewell NR, Henkel CV, Richardson MK, Mackessy SP, Bronikowsi AM, Yandell M, Warren WC, Secor SM, Pollock DD. Proceedings of the National Academy of Sciences of the United States of America; 111(8):3194.
Date published:
February 25, 2014
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Wes Warren.
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Moving toward a precise nutrition: Preferential loading of seeds with essential nutrients over non-essential toxic elements. Khan MA, Castro-Guerrero N, Mendoza-Cozatl DG. Frontiers in Plant Science; 5(FEB):51.
Date published:
February 20, 2014
Featured in this article:
David Mendoza-Cózatl.
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Quartet-based methods to reconstruct phylogenetic networks. Yang J, Li J, Grünewald S, Xu Y, Wan X-F. BMC System Biology; 8(1):21.
Date published:
February 20, 2014
Featured in this article:
XiuFeng “Henry” Wan.
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A systems-wide comparison of red rice (Oryza longistaminata) tissues identifies rhizome specific genes and proteins that are targets for cultivated rice improvement. He R, Salvato F, Park J-J, Kim M-J, Nelson W, Balbuena TS, Willer M, Crow JA, May GD, Soderlund CA, Thelen JJ, Gang DR. BMC Plant Biology; 14(1):46.
Date published:
February 12, 2014
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Jay Thelen.
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Systematics and evolution of inflorescence structure in the tradescantia alliance (commelinaceae). Hertweck KL, Pires JC. Systematic Botany; 39(1):105-116.
Date published:
February 1, 2014
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The potato tuber mitochondrial proteome. Salvato F, Havelund JF, Chen M, Shyama Prasad Rao R, Rogowska-Wrzesinska A, Jensen ON, Gang DR, Thelen JJ, Møller IM. Plant Physiology; 164(2):637-653.
Date published:
February 1, 2014
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Jay Thelen.
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Code-Assisted Discovery of TAL Effector Targets in Bacterial Leaf Streak of Rice Reveals Contrast with Bacterial Blight and a Novel Susceptibility Gene. Cernadas RA, Doyle EL, Niño-Liu DO, Wilkins KE, Bancroft T, Wang L, Schmidt CL, Caldo R, Yang B, White FF, Nettleton D, Wise RP, Bogdanove AJ. PLoS Pathogens; 10(2):e1003972.
Date published:
February 1, 2014
Featured in this article:
Bing Yang.
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Effect of induced subclinical hypocalcemia on physiological responses and neutrophil function in dairy cows. Martinez N, Sinedino LDP, Bisinotto RS, Ribeiro ES, Gomes GC, Lima FS, Greco LF, Risco CA, Galvão KN, Taylor-Rodriguez D, Driver JP, Thatcher WW, Santos JEP. Journal of Dairy Science; 97(2):874-887.
Date published:
February 1, 2014
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John Driver.
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Lateral organ boundaries 1 is a disease susceptibility gene for citrus bacterial canker disease. Hu Y, Zhang J, Jia H, Sosso D, Li T, Frommer WB, Yang B, White FF, Wang N, Jones JB. Proceedings of the National Academy of Sciences of the United States of America; 111(4):E521-529.
Date published:
January 28, 2014
Featured in this article:
Bing Yang.
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Initial description of the developing soybean seed protein Lys-Nᵋ-acetylome. Smith-Hammond CL, Swatek KN, Johnston ML, Thelen JJ, Miernyk JA. Journal of Proteomics; 96:56-66.
Date published:
January 16, 2014
Featured in this article:
Jay Thelen.
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ALX/FPR2 receptor for RvD1 is expressed and functional in salivary glands. Nelson JW, Leigh NJ, Mellas RE, McCall AD, Aguirre A, Baker OJ. American Journal of Physiology - Cell Physiology; 306(2):C178-C185.
Date published:
January 15, 2014
Featured in this article:
Olga Baker.
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Screening inhibitory potential of anti-HIV RT RNA aptamers. Lange MJ, Burke DH. Methods in Molecular Biology; 1103:11-29.
Date published:
January 1, 2014
Featured in this article:
Donald Burke-Agüero.
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RNA structural analysis by enzymatic digestion. Biondi E, Burke DH. Methods in Molecular Biology; 1086:41-52.
Date published:
January 1, 2014
Featured in this article:
Donald Burke-Agüero.
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Rhabdomyosarcoma: Current challenges and their implications for developing therapies. Hettmer S, Li Z, Billin AN, Barr FG, Cornelison D, Ehrlich AR, Guttridge DC, Hayes-Jordan A, Helman LJ, Houghton PJ, Khan J, Langenau DM, Linardic CM, Pal R, Partridge TA, Pavlath GK, Rota R, Schafer BW, Shipley J, Stillman B, Wexler LH, Wagers AJ, Keller C. Cold Spring Harbor Perspectives in Medicine; 4(11):1-8.
Date published:
January 1, 2014
Featured in this article:
D Cornelison.
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A unified nomenclature of nitrate transporter 1/peptide transporter family members in plants. Léran S, Varala K, Boyer J-C, Chiurazzi M, Crawford N, Daniel-Vedele F, David L, Dickstein R, Fernandez E, Forde B, Gassmann W, Geiger D, Gojon A, Gong J-M, Halkier BA, Harris JM, Hedrich R, Limami AM, Rentsch D, Seo M, Tsay Y-F, Zhang M, Coruzzi G, Lacombe B. Trends in Plant Science; 19(1):5-9.
Date published:
January 1, 2014
Featured in this article:
Walter Gassmann.
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Members of the NPF3 transporter subfamily encode pathogen-inducible nitrate/nitrite transporters in grapevine and arabidopsis. Pike S, Gao F, Kim MJ, Kim SH, Schachtman DP, Gassmann W. Plant and Cell Physiology; 55(1):162-170.
Date published:
January 1, 2014
Featured in this article:
Walter Gassmann.
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Spinal muscular atrophy: A motor neuron disorder or a multi-organ disease?. Shababi M, Lorson CL, Rudnik-Schöneborn SS. Journal of Anatomy; 224(1):15-28.
Date published:
January 1, 2014
Featured in this article:
Christian Lorson.
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Diversification times among Brassica (Brassicaceae) crops suggest hybrid formation after 20 million years of divergence. Arias T, Beilstein MA, Tang M, McKain MR, Pires JC. American Journal of Botany; 101(1):86-91.
Date published:
January 1, 2014
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.
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Soybean knowledge base (SoyKB): A web resource for integration of soybean translational genomics and molecular breeding. Joshi T, Fitzpatrick MR, Chen S, Liu Y, Zhang H, Endacott RZ, Gaudiello EC, Stacey G, Nguyen HT, Xu D. Nucleic Acids Research; 42(D1):D1245-D1252.
Date published:
January 1, 2014
Featured in this article:
Trupti Joshi,
Gary Stacey,
Dong Xu.
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Virtual physical examination (VPE): A multimedia system for education in medicine. Joshi T, Williamson R, Patil K, Viyanon S, Li X, Zhang Y, Qi W, Li D, Zimmer J, Illindala U, Foley S, Campbell R, Duan Y, Xu D. International Journal of Functional Informatics and Personalised Medicine; 4(3-4):181-197.
Date published:
January 1, 2014
Featured in this article:
Trupti Joshi,
Dong Xu.
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4′-Ethynyl-2-fluoro-2′-deoxyadenosine (EFdA) inhibits HIV-1 reverse transcriptase with multiple mechanisms. Michailidis E, Huber AD, Ryan EM, Ong YT, Leslie MD, Matzek KB, Singh K, Marchand B, Hagedorn AN, Kirby KA, Rohan LC, Kodama EN, Mitsuya H, Parniak MA, Sarafianosa SG. Journal of Biological Chemistry; 289(35):24533-24548.
Date published:
January 1, 2014
Featured in this article:
Kamlendra Singh.
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Identification of a plant receptor for extracellular ATP. Choi J, Tanaka K, Cao Y, Qi Y, Qiu J, Liang Y, Lee SY, Stacey G. Science; 343(6168):290-294.
Date published:
January 1, 2014
Featured in this article:
Gary Stacey.
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Lipochitooligosaccharide recognition: An ancient story. Liang Y, Tóth K, Cao Y, Tanaka K, Espinoza C, Stacey G. Journal of Physiology; 204(2):289-296.
Date published:
January 1, 2014
Featured in this article:
Gary Stacey.
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An atlas of soybean small RNAs identifies phased siRNAs from hundreds of coding genes. Arikit S, Xia R, Kakrana A, Huang K, Zhai J, Yan Z, Valdés-López O, Prince S, Musket TA, Nguyen HT, Stacey G, Meyers BC. Plant Cell; 26(12):4584-4601.
Date published:
January 1, 2014
Featured in this article:
Gary Stacey.
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The kinase LYK5 is a major chitin receptor in Arabidopsis and forms a chitin-induced complex with related kinase CERK1. Cao Y, Liang Y, Tanaka K, Nguyen CT, Jedrzejczak RP, Joachimiak A, Stacey G. eLife; 3:e03766.
Date published:
January 1, 2014
Featured in this article:
Gary Stacey.
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P³DB 3.0: From plant phosphorylation sites to protein networks. Yao Q, Ge H, Wu S, Zhang N, Chen W, Xu C, Gao J, Thelen JJ, Xu D. Nucleic Acids Research; 42(D1):D1206-D1213.
Date published:
January 1, 2014
Featured in this article:
Jay Thelen,
Dong Xu.
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Global quantitative proteomics using spectral counting: An inexpensive experimental and bioinformatics workflow for deep proteome coverage. Balbuena TS, Demartini DR, Thelen JJ. Methods in Molecular Biology; 1072:171-183.
Date published:
January 1, 2014
Featured in this article:
Jay Thelen.
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Purification of protein complexes and characterization of protein-protein interactions. Swatek KN, Lee CB, Thelen JJ. Methods in Molecular Biology; 1062:609-628.
Date published:
January 1, 2014
Featured in this article:
Jay Thelen.
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Elephant shark genome provides unique insights into gnathostome evolution. Venkatesh B, Lee AP, Ravi V, Maurya AK, Lian MM, Swann JB, Ohta Y, Flajnik MF, Sutoh Y, Kasahara M, Hoon S, Gangu V, Roy SW, Irimia M, Korzh V, Kondrychyn I, Lim ZW, Tay B-H, Tohari S, Kong KW, Ho S, Lorente-Galdos B, Quilez J, Marques-Bonet T, Raney BJ, Ingham PW, Tay A, Hillier LW, Minx P, Boehm T, Wilson RK, Brenner S, Warren WC. Nature; 505(7482):174-179.
Date published:
January 1, 2014
Featured in this article:
Wes Warren.
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Mammalian y chromosomes retain widely expressed dosage-sensitive regulators. Bellott DW, Hughes JF, Skaletsky H, Brown LG, Pyntikova T, Cho T-J, Koutseva N, Zaghlul S, Graves T, Rock S, Kremitzki C, Fulton RS, Dugan S, Ding Y, Morton D, Khan Z, Lewis L, Buhay C, Wang Q, Watt J, Holder M, Lee S, Nazareth L, Rozen S, Muzny DM, Warren WC, Gibbs RA, Wilson RK, Page DC. Nature; 508(7497):494-499.
Date published:
January 1, 2014
Featured in this article:
Wes Warren.
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Genome sequence of the tsetse fly (Glossina morsitans ): Vector of African trypanosomiasis. Watanabe J, Hattori M, Berriman M, Lehane MJ, Hall N, Solano P, Aksoy S, Hide W, Touré Y, Attardo GM, Darby AC, Toyoda A, Hertz-Fowler C, Larkin DM, Cotton JA, Sanders MJ, Swain MT, Quail MA, Inoue N, Ravel S, Taylor TD, Srivastava TP, Sharma V, Warren W, Wilson RK, Suzuki Y, Lawson D, Hughes DST, Megy K, Masiga DK, Mireji PO, Hansen IA, Van Den Abbeele J, Benoit JB, Bourtzis K, Obiero GFO, Robertson HM, Jones JW, Zhou J-J, Field LM, Friedrich M, Nyanjom SRG, Telleria EL, Caljon G, Ribeiro JMC, Acosta-Serrano A, Ooi C-P, Rose C, Price DP, Haines LR, Christoffels A, Sim C, Pham DQD, Denlinger DL, Geiser DL, Omedo IA, Winzerling JJ, Peyton JT, Marucha KK, Jonas M, Meuti ME, Rawlings ND, Zhang Q, Macharia RW, Michalkova V, Dashti ZJS, Baumann AA, Gäde G, Marco HG, Caers J, Schoofs L, Riehle MA, Hu W, Tu Z, Tarone AM, Malacrida AR, Kibet CK, Scolari F, Koekemoer JJO, Willis J, Gomulski LM, Falchetto M, Scott MJ, Fu S, Sze S-H, Luiz T, Weiss B, Walshe DP, Wang J, Wamalwa M, Mwangi S, Ramphul UN, Snyder AK, Brelsfoard CL, Thomas GH, Tsiamis G, Arensburger P, Rio RVM, Macdonald SJ, Panji S, Kruger A, Benkahla A, Balyeidhusa ASP, Msangi A, Okoro CK, Stephens D, Stanley EJ, Mpondo F, Wamwiri F, Mramba F, Siwo G, Withinji G, Harkins G, Murilla G, Lehväslaiho H, Malele I, Auma JE, Kinyua JK, Ouma J, Okedi L, Manga L, Aslett M, Koffi M, Gaunt MW, Makgamathe M, Mulder N, Manangwa O, Abila PP, Wincker P, Gregory R, Bateta R, Sakate R, Ommeh S, Lehane S, Imanishi T, Osamor VC, Kawahara Y. Science; 344(6182):380-386.
Date published:
January 1, 2014
Featured in this article:
Wes Warren.
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Venkatesh et al. reply. Venkatesh B, Lee AP, Swann JB, Ohta Y, Flajnik MF, Kasahara M, Boehm T, Warren WC. Nature; 511(7508):E9-E10.
Date published:
January 1, 2014
Featured in this article:
Wes Warren.
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Genome of the house fly, Musca domestica L., a global vector of diseases with adaptations to a septic environment. Scott JG, Warren WC, Beukeboom LW, Bopp D, Clark AG, Giers SD, Hediger M, Jones AK, Kasai S, Leichter CA, Li M, Meisel RP, Minx P, Murphy TD, Nelson DR, Reid WR, Rinkevich FD, Robertson HM, Sackton TB, Sattelle DB, Thibaud-Nissen F, Tomlinson C, van de Zande L, Walden KK, Wilson RK, Liu N. Genome Biology; 15(10):466.
Date published:
January 1, 2014
Featured in this article:
Wes Warren.
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Conserved syntenic clusters of protein coding genes are missing in birds. Lovell PV, Wirthlin M, Wilhelm L, Minx P, Lazar NH, Carbone L, Warren WC, Mello CV. Genome Biology; 15(12):565.
Date published:
January 1, 2014
Featured in this article:
Wes Warren.
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Disrupting KATP channels diminishes the estrogen-mediated protection in female mutant mice during ischemia-reperfusion. Gao J, Xu D, Sabat G, Valdivia H, Xu W, Shi N-Q. Clinical Proteomics; 11(1):19.
Date published:
January 1, 2014
Featured in this article:
Dong Xu.
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MUFOLD-DB: A processed protein structure database for protein structure prediction and analysis. He Z, Zhang C, Xu Y, Zeng S, Zhang J, Xu D. BMC Genomics; 15:S2.
Date published:
January 1, 2014
Featured in this article:
Dong Xu.
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TALE activation of endogenous genes in Chlamydomonas reinhardtii. Gao H, Wright DA, Li T, Wang Y, Horken K, Weeks DP, Yang B, Spalding MH. Algal Research; 5(1):52-60.
Date published:
January 1, 2014
Featured in this article:
Bing Yang.
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TALEN utilization in rice genome modifications. Li T, Liu B, Chen CY, Yang B. Methods; 69(1):9-16.
Date published:
January 1, 2014
Featured in this article:
Bing Yang.
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Interdisciplinary Collaborative Team for Blastocyst Implantation Research: Inception and perspectives. Yoshinaga K, Prabhudas M, Davies C, White K, Caron K, Golos T, Fazleabas A, Paria B, Mor G, Paul S, Ye X, Dey SK, Spencer T, Roberts RM. American Journal of Reproductive Immunology; 71(1):1-11.
Date published:
January 1, 2014
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2013
Development and validation of an attenuated Mycoplasma hyopneumoniae aerosol vaccine. Feng Z-X, Wei Y-N, Li G-L, Lu X-M, Wan X-F, Pharr GT, Wang Z-W, Kong M, Gan Y, Bai F-F, Liu M-J, Xiong Q-Y, Wu X-S, Shao G-Q. Veterinary Microbiology; 167(3-4):417-424.
Date published:
December 27, 2013
Featured in this article:
XiuFeng “Henry” Wan.
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PiggyBac transposon plus insulators overcome epigenetic silencing to provide for stable signaling pathway reporter cell lines. Mossine VV, Waters JK, Hannink M, Mawhinney TP. PLoS ONE; 8(12):e85494.
Date published:
December 20, 2013
Featured in this article:
.
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Soybean knowledge base (SoyKB): Bridging the gap between soybean translational genomics and breeding. Joshi T, Fitzpatrick MR, Chen S, Liu Y, Zhang H, Endacott RZ, Gaudiello EC, Stacey G, Nguyen HT, Xu D. Proceedings - 2013 IEEE International Conference on Bioinformatics and Biomedicine, IEEE BIBM 2013; 42-44.
Date published:
December 18, 2013
Featured in this article:
Trupti Joshi,
Gary Stacey,
Dong Xu.
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The Burmese python genome reveals the molecular basis for extreme adaptation in snakes. Castoe TA, De Koning APJ, Hall KT, Card DC, Schield DR, Fujita MK, Ruggiero RP, Degner JF, Daza JM, Gu W, Reyes-Velasco J, Shaney KJ, Castoe JM, Fox SE, Poole AW, Polanco D, Dobry J, Vandewege MW, Li Q, Schott RK, Kapusta A, Minx P, Feschotte C, Uetz P, Ray DA, Hoffmann FG, Bogden R, Smith EN, Chang BSW, Vonk FJ, Casewell NR, Henkel CV, Richardson MK, Mackessy SP, Bronikowsi AM, Yandell M, Warren WC, Secor SM, Pollock DD. Proceedings of the National Academy of Sciences of the United States of America; 110(51):20645-20650.
Date published:
December 17, 2013
Featured in this article:
Wes Warren.
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Retention projection enables reliable use of shared gas chromatographic retention data across laboratories, instruments, and methods. Barnes BB, Wilson MB, Carr PW, Vitha MF, Broeckling CD, Heuberger AL, Prenni J, Janis GC, Corcoran H, Snow NH, Chopra S, Dhandapani R, Tawfall A, Sumner LW, Boswell PG. Analytical Chemistry; 85(23):11650-11657.
Date published:
December 3, 2013
Featured in this article:
Lloyd Sumner.
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Genome-wide analysis of branched-chain amino acid levels in Arabidopsis Seeds. Angelovici R, Lipka AE, Deason N, Gonzalez-Jorge S, Lin H, Cepela J, Buell R, Gore MA, DellaPenna, D. Plant Cell; 25(12):4827-4843.
Date published:
December 1, 2013
Featured in this article:
Ruthie Angelovici.
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Carotenoid cleavage dioxygenase4 is a negative regulator of β-carotene content in arabidopsis seeds. Gonzalez-Jorge S, Ha S-H, Magallanes-Lundback M, Gilliland LU, Zhou A, Lipka AE, Nguyen Y-N, Angelovici R, Lin H, Cepela J, Little H, Buell CR, Gore MA, DellaPenna, D. Plant Cell; 25(12):4812-4826.
Date published:
December 1, 2013
Featured in this article:
Ruthie Angelovici.
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Natural Variation in Small Molecule-Induced TIR-NB-LRR Signaling Induces Root Growth Arrest via EDS1- and PAD4-Complexed R Protein VICTR in Arabidopsis. Kim T-H, Kunz H-H, Bhattacharjee S, Hauser F, Park J, Engineer C, Liu A, Ha T, Parker JE, Gassmann W, Schroeder JI. Plant Cell; 24(12):5177-5192.
Date published:
December 1, 2013
Featured in this article:
Walter Gassmann.
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Recombination can lead to spurious results in retroviral transduction with dually fluorescent reporter genes. Salamango DJ, Evans DA, Baluyot MF, Furlong JN, Johnson MC. Journal of Virology; 87(24):13900-13903.
Date published:
December 1, 2013
Featured in this article:
Marc Johnson.
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Retrovirus glycoprotein functionality requires proper alignment of the ectodomain and the membrane-proximal cytoplasmic tail. Janaka SK, Gregory DA, Johnson MC. Journal of Virology; 87(23):12805-12813.
Date published:
December 1, 2013
Featured in this article:
Marc Johnson.
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Effects of substitutions at the 4′ and 2 positions on the bioactivity of 4′-ethynyl-2-fluoro-2′-deoxyadenosine. Kirby KA, Michailidis E, Fetterly TL, Steinbach MA, Singh K, Marchand B, Leslie MD, Hagedorn AN, Kodama EN, Marquez VE, Hughes SH, Mitsuya H, Parniak MA, Sarafianos SG. Antimicrobial Agents and Chemotherapy; 57(12):6254-6264.
Date published:
December 1, 2013
Featured in this article:
Kamlendra Singh.
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miR172 regulates soybean nodulation. Yan Z, Hossain MS, Wang J, Valdés-López O, Liang Y, Libault M, Qiu L, Stacey G. Molecular Plant-Microbe Interactions; 26(12):1371-1377.
Date published:
December 1, 2013
Featured in this article:
Gary Stacey.
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Perspective on emergence and re-emergence of amantadine resistant influenza A viruses in domestic animals in China. Wan X-F, Carrel M, Long L-P, Alker AP, Emch M. Infection, Genetics and Evolution; 20:298-303.
Date published:
December 1, 2013
Featured in this article:
XiuFeng “Henry” Wan.
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Mutation tryptophan to leucine at position 222 of haemagglutinin could facilitate H3N2 influenza A virus infection in dogs. Yang G, Li S, Blackmon S, Ye J, Bradley KC, Cooley J, Smith D, Hanson L, Cardona C, Steinhauer DA, Webby R, Liao M, Wan X-F. Journal of General Virology; 94(PART 12):2599-2608.
Date published:
December 1, 2013
Featured in this article:
XiuFeng “Henry” Wan.
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Extreme evolutionary conservation of functionally important regions in H1N1 influenza proteome. Warren S, Wan X-F, Conant G, Korkin D. PLoS ONE; 8(11):e81027.
Date published:
November 25, 2013
Featured in this article:
XiuFeng “Henry” Wan.
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No bull: Upholding community standards in public sharing of biological datasets. Hughes JF, Skaletsky H, Bellott DW, Chowdhary BP, Warren WC, Worley KC, Wilson RK, Gibbs RA, Page DC. Proceedings of the National Academy of Sciences of the United States of America; 110(46):E4277.
Date published:
November 12, 2013
Featured in this article:
Wes Warren.
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Echidna venom gland transcriptome provides insights into the evolution of monotreme venom. Wong ESW, Nicol S, Warren WC, Belov K. PLoS ONE; 8(11):e79092.
Date published:
November 12, 2013
Featured in this article:
Wes Warren.
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Whole genome and tandem duplicate retention facilitated glucosinolate pathway diversification in the mustard family. Hofberger JA, Lyons E, Edger PP, Chris Pires J, Eric Schranz M. Genome Biology and Evolution; 5(11):2155-2173.
Date published:
November 1, 2013
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.
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Mutation from arginine to lysine at the position 189 of hemagglutinin contributes to the antigenic drift in H3N2 swine influenza viruses. Ye J, Xu Y, Harris J, Sun h, Bowman AS, Cunningham F, Cardona C, Yoon KJ, Slemons RD, Wan X-F. Virology; 446(1-2):225-229.
Date published:
November 1, 2013
Featured in this article:
XiuFeng “Henry” Wan.
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Systems biology of the vervet monkey. Jasinska AJ, Schmitt CA, Service SK, Cantor RM, Dewar K, Jentsch JD, Kaplan JR, Turner TR, Warren WC, Weinstock GM, Woods RP, Freimer NB. ILAR Journal; 54(2):122-143.
Date published:
November 1, 2013
Featured in this article:
Wes Warren.
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Demonstration of CRISPR/Cas9/sgRNA-mediated targeted gene modification in Arabidopsis, tobacco, sorghum and rice. Jiang W, Zhou H, Bi H, Fromm M, Yang B, Weeks DP. Nucleic Acids Research; 41(20):e188.
Date published:
November 1, 2013
Featured in this article:
Bing Yang.
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Convergence in feeding posture occurs through different genetic loci in independently evolved cave populations of Astyanax mexicanus. Kowalko JE, Rohner N, Linden TA, Rompani SB, Warren WC, Borowsky R, Tabin CJ, Jeffery WR, Yoshizawa M. Proceedings of the National Academy of Sciences of the United States of America; 110(42):16933-16938.
Date published:
October 15, 2013
Featured in this article:
Wes Warren.
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Using an intervening sequence of Faecalibacterium 16S rDNA to identify poultry feces. Shen Z, Duan C, Zhang C, Carson A, Xu D, Zheng G. Water Research; 47(16):6415-6422.
Date published:
October 15, 2013
Featured in this article:
Dong Xu.
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Circles within circles: Crosstalk between protein Ser/Thr/Tyr-phosphorylation and Met oxidation. Rao RSP, Xu D, Thelen JJ, Miernyk JA. BMC Bioinformatics; 14(SUPPL.14):S14.
Date published:
October 9, 2013
Featured in this article:
Dong Xu,
Jay Thelen.
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BinAligner: A heuristic method to align biological networks. Yang J, Li J, Grünewald S, Wan X-F. BMC Bioinformatics; 14(SUPPL.14):S8.
Date published:
October 9, 2013
Featured in this article:
XiuFeng “Henry” Wan.
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Growth factors polymerized within fibrin hydrogel promote amylase production in parotid cells. McCall AD, Nelson JW, Leigh NJ, Duffey ME, Lei P, Andreadis ST, Baker OJ. Tissue Engineering - Part A; 19(19-20):2215-2225.
Date published:
October 1, 2013
Featured in this article:
Olga Baker.
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High-Throughput RNA Sequencing of Pseudomonas-Infected Arabidopsis Reveals Hidden Transcriptome Complexity and Novel Splice Variants. Howard BE, Hu Q, Babaoglu AC, Chandra M, Borghi M, Tan X, He L, Winter-Sederoff H, Gassmann W, Veronese P, Heber S. PLoS ONE; 8(10):e74183.
Date published:
October 1, 2013
Featured in this article:
Walter Gassmann.
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Restoration of SMN to Emx-1 expressing cortical neurons is not sufficient to provide benefit to a severe mouse model of Spinal Muscular Atrophy. Taylor AS, Glascock JJ, Rose FF Jr, Lutz C, Lorson CL. Transgenic Research; 22(5):1029-1036.
Date published:
October 1, 2013
Featured in this article:
Christian Lorson.
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Epigenome-wide inheritance of cytosine methylation variants in a recombinant inbred population. Schmitz RJ, He Y, Valdés-López O, Khan SM, Joshi T, Urich MA, Nery JR, Diers B, Xu D, Stacey G, Ecker JR. Genome Research; 23(10):1663-1674.
Date published:
October 1, 2013
Featured in this article:
Trupti Joshi,
Dong Xu,
Gary Stacey.
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New MDS and clustering based algorithms for protein model quality assessment and selection. Wang Q, Shang C, Xu D, Shang Y. International Journal on Artificial Intelligence Tools; 22(5):1360006.
Date published:
October 1, 2013
Featured in this article:
Dong Xu.
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Predicting gene regulatory networks of soybean nodulation from RNA-Seq transcriptome data. Zhu M, Dahmen JL, Stacey G, Cheng J. BMC Bioinformatics; 14(1):278.
Date published:
September 22, 2013
Featured in this article:
Gary Stacey.
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Interactions between Parents and Parents and Pups in the Monogamous California Mouse (Peromyscus californicus). Rosenfeld CS, Johnson SA, Ellersieck MR, Roberts RM. PLoS ONE; 8(9):e75725.
Date published:
September 19, 2013
Featured in this article:
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New clues in the nucleus: Transcriptional reprogramming in effector-triggered immunity. Bhattacharjee S, Garner CM, Gassmann W. Frontiers in Plant Science; 4(SEP):364.
Date published:
September 13, 2013
Featured in this article:
Walter Gassmann.
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NAF-1 and mitoNEET are central to human breast cancer proliferation by maintaining mitochondrial homeostasis and promoting tumor growth. Sohn Y-S, Tamir S, Song L, Michaeli D, Matouk I, Conlan AR, Harir Y, Holt SH, Shulaev V, Paddock ML, Hochberg A, Cabanchick IZ, Onuchic JN, Jennings PA, Nechushtai R, Mittler R. Proceedings of the National Academy of Sciences of the United States of America; 110(36):14676-14681.
Date published:
September 3, 2013
Featured in this article:
Ron Mittler.
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Enter the matrix: Shape, signal and superhighway. Lund DK, Cornelison DDW. FEBS Journal; 280(17):4089-4099.
Date published:
September 1, 2013
Featured in this article:
D Cornelison.
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Infantile spinale Muskelatrophie: mehr als eine Motoneuronerkrankung? [Infantile spinal muscular atrophy: More than a motor neuron disease?]. Rudnik-Schöneborn S, Lorson CL, Shababi M. Medizinische Genetik; 25(3):347-351.
Date published:
September 1, 2013
Featured in this article:
Christian Lorson.
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Temporal-spatial interaction between reactive oxygen species and abscisic acid regulates rapid systemic acclimation in plants. Suzuki N, Miller G, Salazar C, Mondal HA, Shulaev E, Cortes DF, Shuman JL, Luo X, Shah J, Schlauch K, Shulaev V, Mittler R. Plant Cell; 25(9):3553-3569.
Date published:
September 1, 2013
Featured in this article:
Ron Mittler.
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Independent specialization of the human and mouse X chromosomes for the male germ line. Mueller JL, Skaletsky H, Brown LG, Zaghlul S, Rock S, Graves T, Auger K, Warren WC, Wilson RK, Page DC. Nature Genetics; 45(9):1083-1087.
Date published:
September 1, 2013
Featured in this article:
Wes Warren.
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NOA: A cytoscape plugin for network ontology analysis. Zhang C, Wang J, Hanspers K, Xu D, Chen L, Pico AR. Bioinformatics; 29(16):2066-2067.
Date published:
August 15, 2013
Featured in this article:
Dong Xu.
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An atlas of over 90,000 conserved noncoding sequences provides insight into crucifer regulatory regions. Haudry A, Platts AE, Vello E, Hoen DR, Leclercq M, Williamson RJ, Forczek E, Joly-Lopez Z, Steffen JG, Hazzouri KM, Dewar K, Stinchcombe JR, Schoen DJ, Wang X, Schmutz J, Town CD, Edger PP, Pires JC, Schumaker KS, Jarvis DE, Mandáková T, Lysak MA, Van Den Bergh E, Schranz ME, Harrison PM, Moses AM. Nature Genetics; 45(8):891-898.
Date published:
August 1, 2013
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Is DNA Alive? A Study of Conceptual Change Through Targeted Instruction. Witzig SB, Freyermuth SK, Siegel MA, Izci K, Pires JC. Research in Science Education; 43(4):1361-1375.
Date published:
August 1, 2013
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Identification of antioxidants in methanol extracts from soymilk. Zhang H, Sumner L, Lei Z-T, Huhman D, Watson B, Fu F-Y, Yu J. Modern Food Science and Technology; 29(8):1999-2003.
Date published:
August 1, 2013
Featured in this article:
Lloyd Sumner.
Molecular basis for broad neuraminidase immunity: Conserved epitopes in seasonal and pandemic H1N1 as well as H5N1 influenza viruses. Wan H, Gao J, Xu K, Chen H, Couzens LK, Rivers KH, Easterbrook JD, Yang K, Zhong L, Rajabi M, Ye J, Sultana I, Wan X-F, Liu X, Perez DR, Taubenberger JK, Eichelberger MC. Journal of Virology; 87(16):9290-9300.
Date published:
August 1, 2013
Featured in this article:
XiuFeng “Henry” Wan.
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A Joint Matrix Completion and Filtering Model for Influenza Serological Data Integration. Yuan X-T, Zhang T, Wan X-F. PLoS ONE; 8(7):e69842.
Date published:
July 25, 2013
Featured in this article:
XiuFeng “Henry” Wan.
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Transmembrane Protein Alignment and Fold Recognition Based on Predicted Topology. Wang H, He Z, Zhang C, Zhang L, Xu D. PLoS ONE; 8(7):e69744.
Date published:
July 19, 2013
Featured in this article:
Dong Xu.
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Using sequence data to infer the antigenicity of influenza virus. Sun H, Yang J, Zhang T, Long L-P, Jia K, Yang G, Webby RJ, Wan X-F. mBio; 4(4):e00230-13.
Date published:
July 2, 2013
Featured in this article:
XiuFeng “Henry” Wan.
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Enhancement of SMN protein levels in a mouse model of spinal muscular atrophy using novel drug-like compounds. Cherry JJ, Osman EY, Evans MC, Choi S, Xing X, Cuny GD, Glicksman MA, Lorson CL, Androphy EJ. EMBO Molecular Medicine; 5(7):1103-1118.
Date published:
July 1, 2013
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Christian Lorson.
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Linking genes of unknown function with abiotic stress responses by high-throughput phenotype screening. Luhua S, Hegie A, Suzuki N, Shulaev E, Luo X, Cenariu D, Ma V, Kao S, Lim J, Gunay MB, Oosumi T, Lee SC, Harper J, Cushman J, Gollery M, Girke T, Bailey-Serres J, Stevenson RA, Zhu J-K, Mittler R. Physiologia Plantarum; 148(3):322-333.
Date published:
July 1, 2013
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Ron Mittler.
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Functional genomics, challenges and perspectives for the future. Mittler R, Shulaev V. Physiologia Plantarum; 148(3):317-321.
Date published:
July 1, 2013
Featured in this article:
Ron Mittler.
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Novel inhibitors of severe acute respiratory syndrome coronavirus entry that act by three distinct mechanisms. Adedeji AO, Severson W, Jonsson C, Singh K, Weiss SR, Sarafianosa SG. Journal of Virology; 87(14):8017-8028.
Date published:
July 1, 2013
Featured in this article:
Kamlendra Singh.
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Characterization of the formation of branched short-chain fatty acid:coas for bitter acid biosynthesis in hop glandular trichomes. Xu H, Zhang F, Liu B, Huhman DV, Sumner LW, Dixon RA, Wang G. Molecular Plant; 6(4):1301-1317.
Date published:
July 1, 2013
Featured in this article:
Lloyd Sumner.
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Medicago glucosyltransferase UGT72L1: Potential roles in proanthocyanidin biosynthesis. Pang Y, Cheng X, Huhman DV, Ma J, Peel GJ, Yonekura-Sakakibara K, Saito K, Shen G, Sumner LW, Tang Y, Wen J, Yun J, Dixon RA. Planta; 238(1):139-154.
Date published:
July 1, 2013
Featured in this article:
Lloyd Sumner.
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The response of Asterochloris erici (Ahmadjian) Skaloud et Peksa to desiccation: A proteomic approach. Gasulla F, Jain R, Barreno E, Guéra A, Balbuena TS, Thelen JJ, Oliver MJ. Plant, Cell and Environment; 36(7):1363-1378.
Date published:
July 1, 2013
Featured in this article:
Jay Thelen.
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Antigenic characterization of H3N2 influenza a viruses from ohio agricultural fairs. Feng Z, Gomez J, Bowman AS, Ye J, Long L-P, Nelson SW, Yang J, Martin B, Jia K, Nolting JM, Cunningham F, Cardona C, Zhang J, Yoon K-J, Slemons RD, Wan X-F. Journal of Virology; 87(13):7655-7667.
Date published:
July 1, 2013
Featured in this article:
XiuFeng “Henry” Wan.
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The duck genome and transcriptome provide insight into an avian influenza virus reservoir species. Huang Y, Li Y, Burt DW, Chen H, Zhang Y, Qian W, Kim H, Gan S, Zhao Y, Li J, Yi K, Feng H, Zhu P, Li B, Liu Q, Fairley S, Magor KE, Du Z, Hu X, Goodman L, Tafer H, Vignal A, Lee T, Kim K-W, Sheng Z, An Y, Searle S, Herrero J, Groenen MAM, Crooijmans RPMA, Faraut T, Cai Q, Webster RG, Aldridge JR, Warren WC, Bartschat S, Kehr S, Marz M, Stadler PF, Smith J, Kraus RHS, Zhao Y, Ren L, Fei J, Morisson M, Kaiser P, Griffin DK, Rao M, Pitel F, Wang J, Li N. Nature Genetics; 45(7):776-783.
Date published:
July 1, 2013
Featured in this article:
Wes Warren.
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Plant microRNAs display differential 39 truncation and tailing modifications that are ARGONAUTE1 dependent and conserved across species. Zhai J,vZhao Y, Simon SA, Huang S, Petsch K, Arikit S, Pillay M, Ji L, Xie M, Cao X, Yu B, Timmermans M, Yang B, Chen X, Meyersa BC. Plant Cell; 25(7):2417-2428.
Date published:
July 1, 2013
Featured in this article:
Bing Yang.
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Comparison of extravillous trophoblast cells derived from human embryonic stem cells and from first trimester human placentas. Telugu BP, Adachi K, Schlitt JM, Ezashi T, Schust DJ, Roberts RM, Schulz LC. Placenta; 34(7):536-543.
Date published:
July 1, 2013
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Functional Complementation of a Model Target to Study Vpu Sensitivity. Janaka SK, Faurot J, Johnson MC. PLoS ONE; 8(6):e68507.
Date published:
June 28, 2013
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Marc Johnson.
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To the Root of the Curl: A Signature of a Recent Selective Sweep Identifies a Mutation That Defines the Cornish Rex Cat Breed. Gandolfi B, Alhaddad H, Affolter VK, Brockman J, Haggstrom J, Joslin SEK, Koehne AL, Millikin JC, Outerbridge CA, Warren WC, Lyons LA. PLoS ONE; 8(6):e67105.
Date published:
June 27, 2013
Featured in this article:
Wes Warren.
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Hypersusceptibility mechanism of Tenofovir-resistant HIV to EFdA. Michailidis E, Ryan EM, Hachiya A, Kirby KA, Marchand B, Leslie MD, Huber AD, Ong YT, Jackson JC, Singh K, Kodama EN, Mitsuya H, Parniak MA, Sarafianos SG. Retrovirology; 10(1):65.
Date published:
June 24, 2013
Featured in this article:
Kamlendra Singh.
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Label-free quantitative proteomic analysis of systemic responses to local wounding and virus infection in Arabidopsis thaliana. Niehl A, Zhang ZJ, Kuiper M, Peck SC, Heinlein M. Journal of Proteome Research; 12(6):2491-2503.
Date published:
June 7, 2013
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Scott Peck.
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A Computational Systems Biology Study for Understanding Salt Tolerance Mechanism in Rice. Wang J, Chen L, Wang Y, Zhang J, Liang Y, Xu D. PLoS ONE; 8(6):e64929.
Date published:
June 7, 2013
Featured in this article:
Dong Xu.
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Transcriptomic analysis of cultured whale skin cells exposed to hexavalent chromium [Cr(VI)]. Pabuwal V, Boswell M, Pasquali A, Wise SS, Kumar S, Shen Y, Garcia T, LaCerte C, Wise JP, Warren W, Walter RB. Aquatic Toxicology; 134-135:74-81.
Date published:
June 5, 2013
Featured in this article:
Wes Warren.
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Sequences in gibbon ape leukemia virus envelope that confer sensitivity to HIV-1 accessory protein Vpu (Erratum). Janaka SK, Lucas TM, Johnson MC. Journal of Virology; 87(12):7198.
Date published:
June 1, 2013
Featured in this article:
Marc Johnson.
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Preface. McSteen P, Scheres B, Zhao Y. Journal of Experimental Botany; 64(9):2539-2540.
Date published:
June 1, 2013
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Paula McSteen.
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Up-regulation and activation of the P2Y2 nucleotide receptor mediate neurite extension in IL-1β-treated mouse primary cortical neurons. Peterson TS, Thebeau CN, Ajit D, Camden JM, Woods LT, Wood WG, Petris MJ, Sun GY, Erb L, Weisman GA. Journal of Neurochemistry; 125(6):885-896.
Date published:
June 1, 2013
Featured in this article:
Michael Petris,
Gary Weisman.
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Repeated exposure to 5D9, an inhibitor of 3D polymerase, effectively limits the replication of foot-and-mouth disease virus in host cells. Rai DK, Schafer EA, Singh K, McIntosh MA, Sarafianos SG, Rieder E. Antiviral Research; 98(3):380-385.
Date published:
June 1, 2013
Featured in this article:
Kamlendra Singh.
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Detection of African swine fever virus-like sequences in ponds in the Mississippi Delta through metagenomic sequencing. Wan X-F, Barnett JL, Cunningham F, Chen S, Yang G, Nash S, Long L-P, Ford L, Blackmon S, Zhang Y, Hanson L, He Q. Virus Genes; 46(3):441-446.
Date published:
June 1, 2013
Featured in this article:
XiuFeng “Henry” Wan.
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Influence of mRNA features on siRNA interference efficacy. Liu Y, Chang Y, Zhang C, Wei Q, Chen J, Chen H, Xu D. Journal of Bioinformatics and Computational Biology; 11(3):1341004.
Date published:
June 1, 2013
Featured in this article:
Dong Xu.
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Nutrient-Deprivation Autophagy Factor-1 (NAF-1): Biochemical Properties of a Novel Cellular Target for Anti-Diabetic Drugs. Tamir S, Zuris JA, Agranat L, Lipper CH, Conlan AR, Michaeli D, Harir Y, Paddock ML, Mittler R, Cabantchik ZI, Jennings PA, Nechushtai R. PLoS ONE; 8(5):e61202.
Date published:
May 22, 2013
Featured in this article:
Ron Mittler.
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Elemental Concentrations in the Seed of Mutants and Natural Variants of Arabidopsis thaliana Grown under Varying Soil Conditions. McDowell SC, Akmakjian G, Sladek C, Mendoza-Cozatl D, Morrissey JB, Saini N, Mittler R, Baxter I, Salt DE, Ward JM, Schroeder JI, Guerinot ML, Harper JF. PLoS ONE; 8(5):e63014.
Date published:
May 6, 2013
Featured in this article:
David Mendoza-Cózatl,
Ron Mittler.
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Development and characterization of an SMN2-based intermediate mouse model of spinal muscular atrophy. Cobb MS, Rose FF, Rindt H, Glascock JJ, Shababi M, Miller MR, Osman EY, Yen P-F, Garcia ML, Martin BR, Wetz MJ, Mazzasette C, Feng Z, Ko C-P, Lorson CL. Human Molecular Genetics; 22(9):1843-1855.
Date published:
May 1, 2013
Featured in this article:
Christian Lorson.
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Quartet-net: A quartet-based method to reconstruct phylogenetic networks. Yang J, Grünewald S, Wan X-F. Molecular Biology and Evolution; 30(5):1206-1217.
Date published:
May 1, 2013
Featured in this article:
XiuFeng “Henry” Wan.
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The genome of the platyfish, Xiphophorus maculatus, provides insights into evolutionary adaptation and several complex traits. Schartl M, Walter RB, Shen Y, Garcia T, Catchen J, Amores A, Braasch I, Chalopin D, Volff J-N, Lesch K-P, Bisazza A, Minx P, Hillier L, Wilson RK, Fuerstenberg S, Boore J, Searle S, Postlethwait JH, Warren WC. Nature Genetics; 45(5):567-572.
Date published:
May 1, 2013
Featured in this article:
Wes Warren.
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Designer TAL effectors induce disease susceptibility and resistance to xanthomonas oryzae pv. oryzae in rice. Li T, Huang S, Zhou J, Yang B. Molecular Plant; 6(3):781-789.
Date published:
May 1, 2013
Featured in this article:
Bing Yang.
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Sub-cellular proteomics of Medicago truncatula. Lee J, Lei Z, Watson BS, Sumner LW. Frontiers in Plant Science; 4(APR):112.
Date published:
April 30, 2013
Featured in this article:
Lloyd Sumner.
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A Perspective on Multiple Waves of Influenza Pandemics. Mummert A, Weiss H, Long L-P, Amigó JM, Wan X-F. PLoS ONE; 8(4):e60343.
Date published:
April 23, 2013
Featured in this article:
XiuFeng “Henry” Wan.
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Suppression of plant defense responses by extracellular metabolites from Pseudomonas syringae pv. tabaci in Nicotiana benthamiana. Lee S, Yang DS, Uppalapati SR, Sumner LW, Mysore KS. BMC Plant Biology; 13(1):65.
Date published:
April 18, 2013
Featured in this article:
Lloyd Sumner.
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Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in arabidopsis thaliana. Umezawa T, Sugiyama N, Takahashi F, Anderson JC, Ishihama Y, Peck SC, Shinozaki K. Science Signaling; 6(270):rs8.
Date published:
April 9, 2013
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Scott Peck.
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Watching the grin fade: Tracing the effects of polyploidy on different evolutionary time scales. Mayfield-Jones D, Washburn JD, Arias T, Edger PP, Pires JC, Conant GC. Seminars in Cell and Developmental Biology; 24(4):320-331.
Date published:
April 1, 2013
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Molecular systematics of Allium subgenus Amerallium (Amaryllidaceae) in North America. Wheeler EJ, Mashayekhi S, Mcneal DW, Travis Columbus J, Chris Pires J. American Journal of Botany; 100(4):701-711.
Date published:
April 1, 2013
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The fate of Arabidopsis thaliana homeologous CNSs and their motifs in the paleohexaploid Brassica rapa. Subramaniam S, Wang X, Freeling M, Pires JC. Genome Biology and Evolution; 5(4):646-660.
Date published:
April 1, 2013
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ACYL-LIPID DESATURASE2 is required for chilling and freezing tolerance in Arabidopsis. Chen M, Thelen JJ. Plant Cell; 25(4):1430-1444.
Date published:
April 1, 2013
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Jay Thelen.
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Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution. Smith JJ, Kuraku S, Holt C, Sauka-Spengler T, Jiang N, Campbell MS, Yandell MD, Manousaki T, Meyer A, Bloom OE, Morgan JR, Buxbaum JD, Sachidanandam R, Sims C, Garruss AS, Cook M, Krumlauf R, Wiedemann LM, Sower SA, Decatur WA, Hall JA, Amemiya CT, Saha NR, Buckley KM, Rast JP, Das S, Hirano M, McCurley N, Guo P, Rohner N, Tabin CJ, Piccinelli P, Elgar G, Ruffier M, Aken BL, Searle SMJ, Muffato M, Pignatelli M, Herrero J, Jones M, Brown CT, Chung-Davidson Y-W, Nanlohy KG, Libants SV, Yeh C-Y, McCauley DW, Langeland JA, Pancer Z, Fritzsch B, De Jong PJ, Zhu B, Fulton LL, Theising B, Flicek P, Bronner ME, Warren WC, Clifton SW, Wilson RK, Li W. Nature Genetics; 45(4):415-421.
Date published:
April 1, 2013
Featured in this article:
Wes Warren.
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The western painted turtle genome, a model for the evolution of extreme physiological adaptations in a slowly evolving lineage. Bradley Shaffer H, Minx P, Warren DE, Shedlock AM, Thomson RC, Valenzuela N, Abramyan J, Amemiya CT, Badenhorst D, Biggar KK, Borchert GM, Botka CW, Bowden RM, Braun EL, Bronikowski AM, Bruneau BG, Buck LT, Capel B, Castoe T, Czerwinski M, Delehaunty KD, Edwards SV, Fronick CC, Fujita MK, Fulton L, Graves TA, Green RE, Haerty W, Hariharan R, Hernandez O, Hillier LW, Holloway AK, Janes D, Janzen FJ, Kandoth C, Kong L, de Koning APJ, Li Y, Literman R, McGaugh SE, Mork L, O'Laughlin M, Paitz RT, Pollock DD, Ponting CP, Radhakrishnan S, Raney BJ, Richman JM, St John J, Schwartz T, Sethuraman A, Spinks PQ, Storey KB, Thane N, Vinar T, Zimmerman LM, Warren WC, Mardis ER, Wilson RK. Genome Biology; 14(3):R28.
Date published:
March 28, 2013
Featured in this article:
Wes Warren.
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Complete and unidirectional conversion of human embryonic stem cells to trophoblast by BMP4. Amita M, Adachi K, Alexenko AP, Sinha S, Schust DJ, Schulz LC, Roberts RM, Ezashi T. Proceedings of the National Academy of Sciences of the United States of America; 110(13):E1212-E1221.
Date published:
March 26, 2013
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Biochemistry, proteomics, and phosphoproteomics of plant mitochondria from non-photosynthetic cells. Havelund JF, Thelen JJ, Møller IM. Frontiers in Plant Science; 4(MAR):51.
Date published:
March 13, 2013
Featured in this article:
Jay Thelen.
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Developmental distribution of the plasma membrane-enriched proteome in the maize primary root growth zone. Zhang Z, Voothuluru P, Yamaguchi M, Sharp RE, Peck SC. Frontiers in Plant Science; 4(MAR):33.
Date published:
March 6, 2013
Featured in this article:
Scott Peck.
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Understanding resolvin signaling pathways to improve oral health. Keinan D, Leigh NJ, Nelson JW, De Oleo L, Baker OJ. International Journal of Molecular Sciences; 14(3):5501-5518.
Date published:
March 1, 2013
Featured in this article:
Olga Baker.
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Lewis acid catalysis of phosphoryl transfer from a copper(II)-NTP complex in a kinase ribozyme. Biondi E, Poudyal RR, Forgy JC, Sawyer AW, Maxwell AWR, Burke DH. Nucleic Acids Research; 41(5):3327-3328.
Date published:
March 1, 2013
Featured in this article:
Donald Burke-Agüero.
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Effects of Developmental Bisphenol A Exposure on Reproductive-Related Behaviors in California Mice (Peromyscus californicus): A Monogamous Animal Model. Williams SA, Jasarevic E, Vandas GM, Warzak DA, Geary DC, Ellersieck MR, Roberts RM, Rosenfeld CS. PLoS ONE; 8(2):e55698.
Date published:
February 6, 2013
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Potent inhibition of HIV-1 reverse transcriptase and replication by nonpseudoknot, “UCAA-motif” RNA aptamers. Whatley AS, Ditzler MA, Lange MJ, Biondi E, Sawyer AW, Chang JL, Franken JD, Burke DH. Molecular Therapy - Nucleic Acids; 2:e71.
Date published:
February 5, 2013
Featured in this article:
Donald Burke-Agüero.
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Alteration of the interconversion of pyruvate and malate in the plastid or cytosol of ripening tomato fruit invokes diverse consequences on sugar but similar effects on cellular organic acid, metabolism, and transitory starch accumulation. Osorio S, Vallarino JG, Szecowka M, Ufaz S, Tzin V, Angelovici R, Galili G, Fernie AR. Plant Physiology; 161(2):628-643.
Date published:
February 1, 2013
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Ruthie Angelovici.
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High-throughput sequence analysis reveals structural diversity and improved potency among RNA inhibitors of HIV reverse transcriptase. Ditzler MA, Lange MJ, Bose D, Bottoms CA, Virkler KF, Sawyer AW, Whatley AS, Spollen W, Givan SA, Burke DH. Nucleic Acids Research; 41(3):1873-1884.
Date published:
February 1, 2013
Featured in this article:
Donald Burke-Agüero.
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Multiple gag domains contribute to selective recruitment of murine leukemia virus (MLV) Env to MLV virions. Gregory DA, Lyddon TD, Johnson MC. Journal of Virology; 87(3):1518-1527.
Date published:
February 1, 2013
Featured in this article:
Marc Johnson.
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A cyclic nucleotide-gated channel (CNGC16) in pollen is critical for stress tolerance in pollen reproductive development. Tunc-Ozdemir M, Tang C, Ishka MR, Brown E, Groves NR, Myers CT, Rato C, Poulsen LR, McDowell S, Miller G, Mittler R, Harper JF. Plant Physiology; 161(2):1010-1020.
Date published:
February 1, 2013
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Ron Mittler.
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Current and emerging analytical technologies for analyzing chitin-protein binding interactions. Dahmen JL, Stacey G, Hunt HK. Reviews in Analytical Chemistry; 32(1):35-53.
Date published:
February 1, 2013
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Gary Stacey.
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A versatile mass spectrometry-based method to both identify kinase client-relationships and characterize signaling network topology. Ahsan N, Huang Y, Tovar-Mendez A, Swatek KN, Zhang J, Miernyk JA, Xu D, Thelen JJ. Journal of Proteome Research; 12(2):937-948.
Date published:
February 1, 2013
Featured in this article:
Dong Xu,
Jay Thelen.
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Genomic differences between cultivated soybean, G. max and its wild relative G. soja. Joshi T, Valliyodan B, Wu J-H, Lee S-H, Xu D, Nguyen HT. BMC Genomics; 14:S5.
Date published:
January 21, 2013
Featured in this article:
Trupti Joshi,
Dong Xu.
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Antigenic characterization of recent H5N1 highly pathogenic avian influenza viruses circulating in Egyptian poultry. Beato MS, Mancin M, Yang J, Buratin A, Ruffa M, Maniero S, Fusaro A, Terregino C, Wan X-F, Capua I. Virology; 435(2):350-356.
Date published:
January 20, 2013
Featured in this article:
XiuFeng “Henry” Wan.
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Affinity labeling of hepatitis C virus replicase with a nucleotide analogue: Identification of binding site. Manvar D, Singh K, Pandey VN. Biochemistry; 52(2):432-444.
Date published:
January 15, 2013
Featured in this article:
Kamlendra Singh.
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Maternal exposure to bisphenol A and genistein has minimal effect on A vy/a offspring coat color but favors birth of agouti over nonagouti mice. Rosenfeld CS, Sieli PT, Warzak DA, Ellersieck MR, Pennington KA, Roberts RM. Proceedings of the National Academy of Sciences of the United States of America; 110(2):537-542.
Date published:
January 8, 2013
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.
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Enhanced seed production under prolonged heat stress conditions in Arabidopsis thaliana plants deficient in cytosolic ascorbate peroxidase 2. Suzuki N, Miller G, Sejima H, Harper J, Mittler R. Journal of Experimental Botany; 64(1):253-263.
Date published:
January 1, 2013
Featured in this article:
Ron Mittler.
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Tnt1 retrotransposon mutagenesis: A tool for soybean functional genomics. Cui Y, Barampuram S, Stacey MG, Nathan Hancock C, Findley S, Mathieu M, Zhang Z, Parrott WA, Stacey G. Plant Physiology; 161(1):36-47.
Date published:
January 1, 2013
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Minviluz (Bing) Stacey,
Gary Stacey.
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Shoot to root communication is necessary to control the expression of iron-acquisition genes in Strategy I plants. García MJ, Romera FJ, Stacey MG, Stacey G, Villar E, Alcántara E, Pérez-Vicente R. Planta; 237(1):65-75.
Date published:
January 1, 2013
Featured in this article:
Minviluz (Bing) Stacey,
Gary Stacey.
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The fate of duplicated genes in a polyploid plant genome. Roulin A, Auer PL, Libault M, Schlueter J, Farmer A, May G, Stacey G, Doerge RW, Jackson SA. Plant Journal; 73(1):143-153.
Date published:
January 1, 2013
Featured in this article:
Gary Stacey.
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Role of LysM receptors in chitin-triggered plant innate immunity. Tanaka K, Nguyen CT, Liang Y, Cao Y, Stacey G. Plant Signaling and Behavior; 8(1):147-153.
Date published:
January 1, 2013
Featured in this article:
Gary Stacey.
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Nonlegumes respond to rhizobial nod factors by suppressing the innate immune response. Liang Y, Cao Y, Tanaka K, Thibivilliers S, Wan J, Choi J, Kang CH, Qiu J, Stacey G. Science; 341(6152):1384-1387.
Date published:
January 1, 2013
Featured in this article:
Gary Stacey.
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Aequorin luminescence-based functional calcium assay for heterotrimeric G-proteins in arabidopsis. Tanaka K, Choi J, Stacey G. Methods in Molecular Biology; 1043:45-54.
Date published:
January 1, 2013
Featured in this article:
Gary Stacey.
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Influence of host chloroplast proteins on Tobacco mosaic virus accumulation and intercellular movement. Bhat S, Folimonova SY, Cole AB, Ballard KD, Lei Z, Watson BS, Sumner LW, Nelson RS. Plant Physiology; 161(1):134-147.
Date published:
January 1, 2013
Featured in this article:
Lloyd Sumner.
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The molecular and enzymatic basis of bitter/non-bitter flavor of citrus fruit: Evolution of branch-forming rhamnosyltransferases under domestication. Frydman A, Liberman R, Huhman DV, Carmeli-Weissberg M, Sapir-Mir M, Ophir R, Sumner LW, Eyal Y. Plant Journal; 73(1):166-178.
Date published:
January 1, 2013
Featured in this article:
Lloyd Sumner.
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Functional characterization of proanthocyanidin pathway enzymes from tea and their application for metabolic engineering. Pang Y, Abesinghe ISB, He J, He X, Huhman D, Mudith Mewan K, Sumner LW, Yun J, Dixon RA. Plant Physiology; 161(3):1103-1116.
Date published:
January 1, 2013
Featured in this article:
Lloyd Sumner.
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Basal vertebrates clarify the evolutionary history of ciliopathy-associated genes Tmem138 and Tmem216. Venkatesh B, Ravi V, Lee AP, Warren WC, Brenner S. Molecular Biology and Evolution; 30(1):62-65.
Date published:
January 1, 2013
Featured in this article:
Wes Warren.
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Alternative strategies for development of a reference transcriptome for quantification of allele specific expression in organisms having sparse genomic resources. Shen Y, Garcia T, Pabuwal V, Boswell M, Pasquali A, Beldorth I, Warren W, Schartl M, Cresko WA, Walter RB. Comparative Biochemistry and Physiology - Part D: Genomics and Proteomics; 8(1):11-16.
Date published:
January 1, 2013
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Wes Warren.
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Retrophylogenomics place tarsiers on the evolutionary branch of anthropoids. Hartig G, Churakov G, Warren WC, Brosius J, Makałowski W, Schmitz J. Scientific Reports; 3:1756.
Date published:
January 1, 2013
Featured in this article:
Wes Warren.
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Fast algorithm for population-based protein structural model analysis. Zhang J, Xu D. Proteomics; 13(2):221-229.
Date published:
January 1, 2013
Featured in this article:
Dong Xu.
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Optimised design of siRNA based on multi-featured comparison and analysis of H1N1 virus. Liu Y, Chang Y, Xu D, Li Z, Zhang H, Li J, Tian M. International Journal of Data Mining and Bioinformatics; 7(4):345-357.
Date published:
January 1, 2013
Featured in this article:
Dong Xu.
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Protein structural model selection by combining consensus and single scoring methods. He Z, Alazmi M, Zhang J, Xu D. PLoS ONE; 8(9):e74006.
Date published:
January 1, 2013
Featured in this article:
Dong Xu.
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A computational method for predicting regulation of human microRNAs on the influenza virus genome. Zhang H, Li Z, Li Y, Liu Y, Liu J, Li X, Shen T, Duan Y, Hu M, Xu D. BMC Systems Biology; 7:S3.
Date published:
January 1, 2013
Featured in this article:
Dong Xu.
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Analysis and prediction of protein posttranslational modification sites. Gao J, Yao Q, Bollinger CH, Xu D. Algorithmic and Artificial Intelligence Methods for Protein Bioinformatics; 91-106.
Date published:
January 1, 2013
Featured in this article:
Dong Xu.
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Inoculation and virulence assay for bacterial blight and bacterial leaf streak of rice. Yang B, Bogdanove A. Methods in Molecular Biology; 956:249-255.
Date published:
January 1, 2013
Featured in this article:
Bing Yang.
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TAL effector nuclease (TALEN) engineering. Li T, Yang B. Methods in Molecular Biology; 978:63-72.
Date published:
January 1, 2013
Featured in this article:
Bing Yang.
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Genetically engineered pig models for human diseases. Prather RS, Lorson M, Ross JW, Whyte JJ, Walters E. Annual Review of Animal Biosciences; 1:203-219.
Date published:
January 1, 2013
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Monique Lorson.
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Sex and dose-dependent effects of developmental exposure to bisphenol A on anxiety and spatial learning in deer mice (Peromyscus maniculatus bairdii) offspring. Jašarević E, Williams SA, Vandas GM, Ellersieck MR, Liao C, Kannan K, Roberts RM, Geary DC, Rosenfeld CS. Hormones and Behavior; 63(1):180-189.
Date published:
January 1, 2013
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IFPA Meeting 2012 Workshop Report I: Comparative placentation and animal models, advanced techniques in placental histopathology, human pluripotent stem cells as a model for trophoblast differentiation. Ackerman WE IV, Carter AM, De Mestre AM, Golos TG, Jeschke U, Kusakabe K, Laurent LC, Parast MM, Roberts RM, Robinson JM, Rutherford J, Soma H, Takizawa T, Ui-Tei K, Lash GE. Placenta; 34(SUPPL):S3-S5.
Date published:
January 1, 2013
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Large animal models for stem cell therapy. Harding J, Roberts RM, Mirchnitchenko O. Stem Cell Research and Therapy; 4(2):23.
Date published:
January 1, 2013
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2012
Pathway Correlation Profile of Gene-Gene Co-Expression for Identifying Pathway Perturbation. Tegge AN, Caldwell CW, Xu D. PLoS ONE; 7(12):e52127.
Date published:
December 20, 2012
Featured in this article:
Dong Xu.
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Vpu Downmodulates Two Distinct Targets, Tetherin and Gibbon Ape Leukemia Virus Envelope, through Shared Features in the Vpu Cytoplasmic Tail. Lucas TM, Janaka SK, Stephens EB, Johnson MC. PLoS ONE; 7(12):e51741.
Date published:
December 19, 2012
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Marc Johnson.
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Reactive oxygen species-dependent wound responses in animals and plants. Suzuki N, Mittler R. Free Radical Biology and Medicine; 53(12):2269-2276.
Date published:
December 15, 2012
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Ron Mittler.
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RNA secondary structure comparison based on dynamic programming. Zhang H, Li Z, Liu Y, Li Y, Duan Y, Xu D. Proceedings - 2012 7th International Conference on Computing and Convergence Technology (ICCIT, ICEI and ICACT), ICCCT 2012; 1364-1368.
Date published:
December 3, 2012
Featured in this article:
Dong Xu.
Robust suppression of HIV replication by intracellularly expressed reverse transcriptase aptamers is independent of ribozyme processing. Lange MJ, Sharma TK, Whatley AS, Landon LA, Tempesta MA, Johnson MC, Burke DH. Molecular Therapy; 20(12):2304-2314.
Date published:
December 1, 2012
Featured in this article:
Marc Johnson,
Donald Burke-Agüero.
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Replacement of huntingtin exon 1 by trans-splicing. Rindt H, Yen P-F, Thebeau CN, Peterson TS, Weisman GA, Lorson CL. Cellular and Molecular Life Sciences; 69(24):4191-4204.
Date published:
December 1, 2012
Featured in this article:
Gary Weisman,
Christian Lorson.
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Maternofetal and neonatal copper requirements revealed by enterocyte-specific deletion of the Menkes disease protein. Wang Y, Zhu S, Hodgkinson V, Prohaska JR, Weisman GA, Gitlin JD, Petris MJ. American Journal of Physiology - Gastrointestinal and Liver Physiology; 303(11):G1236-G1244.
Date published:
December 1, 2012
Featured in this article:
Gary Weisman,
Michael Petris.
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14-3-3 proteins SGF14C and SGF14L play critical roles during soybean nodulation. Radwan O, Wu X, Govindarajulu M, Libault M, Neece DJ, Oh M-H, Berg RH, Stacey G, Taylor CG, Huber SC, Clough SJ. Plant Physiology; 160(4):2125-2136.
Date published:
December 1, 2012
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Gary Stacey.
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Effect of maternal obesity on estrous cyclicity, embryo development and blastocyst gene expression in a mouse model. Bermejo-Alvarez P, Rosenfeld CS, Roberts RM. Human Reproduction; 27(12):3513-3522.
Date published:
December 1, 2012
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Evaluating Methods for Isolating Total RNA and Predicting the Success of Sequencing Phylogenetically Diverse Plant Transcriptomes. Johnson MTJ, Carpenter EJ, Tian Z, Bruskiewich R, Burris JN, Carrigan CT, Chase MW, Clarke ND, Covshoff S, dePamphilis CW, Edger PP, Goh F, Graham S, Greiner S, Hibberd JM, Jordon-Thaden I, Kutchan TM, Leebens-Mack J, Melkonian M, Miles N, Myburg H, Patterson J, Pires JC, Ralph P, Rolf M, Sage RF, Soltis D, Soltis P, Stevenson D, Stewart CN, Surek B, Thomsen CJM, Villarreal JC, Wu X, Zhang Y, Deyholos MK, Wong GK-S. PLoS ONE; 7(11):e50226.
Date published:
November 21, 2012
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Elongation Factor 1 alpha1 and Genes Associated with Usher Syndromes Are Downstream Targets of GBX2. Roeseler DA, Sachdev S, Buckley DM, Joshi T, Wu DK, Xu D, Hannink M, Waters ST. PLoS ONE; 7(11):e47366.
Date published:
November 8, 2012
Featured in this article:
Trupti Joshi,
Dong Xu,
.
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Biochemical mechanism of HIV-1 resistance to rilpivirine. Singh K, Marchand B, Rai DK, Sharma B, Michailidis E, Ryan EM, Matzek KB, Leslie MD, Hagedorn AN, Li Z, Norden PR, Hachiya A, Parniak MA, Xu H-T, Wainberg MA, Sarafianos SG. Journal of Biological Chemistry; 287(45):38110-38123.
Date published:
November 2, 2012
Featured in this article:
Kamlendra Singh.
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Quantitative phosphoproteomic analysis of soybean root hairs inoculated with Bradyrhizobium japonicum. Nguyen THN, Brechenmacher L, Aldrich JT, Clauss TR, Gritsenko MA, Hixson KK, Libault M, Tanaka K, Yang F, Yao Q, Paša-Tolić L, Xu D, Nguyen HT, Stacey G. Molecular and Cellular Proteomics; 11(11):1140-1155.
Date published:
November 1, 2012
Featured in this article:
Dong Xu,
Gary Stacey.
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Identification of soybean proteins from a single cell type: The root hair. Brechenmacher L, Nguyen THN, Hixson K, Libault M, Aldrich J, Pasa-Tolic L, Stacey G. Proteomics; 12(22):3365-3373.
Date published:
November 1, 2012
Featured in this article:
Gary Stacey.
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Proteomics and deep sequencing comparison of seasonally active venom glands in the platypus reveals novel venom peptides and distinct expression profiles. Wong ESW, Morgenstern D, Mofiz E, Gomert S, Morris KM, Temple-Smith P, Renfree MB, Whittington CM, King GF, Warren WC, Papenfuss AT, Belov K. Molecular and Cellular Proteomics; 11(11):1354-1364.
Date published:
November 1, 2012
Featured in this article:
Wes Warren.
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Coupling of P2Y receptors to G proteins and other signaling pathways. Erb L, Weisman GA. Wiley Interdisciplinary Reviews: Membrane Transport and Signaling; 1(6):789-803.
Date published:
November 1, 2012
Featured in this article:
Gary Weisman.
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Protein databases on the internet. Xu D. Current protocols in protein science; 2:Unit2.6.
Date published:
November 1, 2012
Featured in this article:
Dong Xu.
Protein databases on the internet. Xu D. Current Protocols in Protein Science; 1(SUPPL.70):2.6.
Date published:
November 1, 2012
Featured in this article:
Dong Xu.
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Spatial navigation strategies in Peromyscus: A comparative study. JaŠarević E, Williams SA, Roberts RM, Geary DC, Rosenfeld CS. Animal Behaviour; 84(5):1141-1149.
Date published:
November 1, 2012
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A role for RNA post-transcriptional regulation in satellite cell activation. Farina NH, Hausburg M, Betta ND, Pulliam C, Srivastava D, Cornelison DDW, Olwin BB. Skeletal Muscle; 2(1):21.
Date published:
October 9, 2012
Featured in this article:
D Cornelison.
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Features for automated tongue image shape classification. Obafemi-Ajayi T, Kanawong R, Xu D, Li S, Duan Y. Proceedings - 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2012; 273-279.
Date published:
October 4, 2012
Featured in this article:
Dong Xu.
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ZHENG classification in Traditional Chinese Medicine based on modified specular-free tongue images. Obafemi-Ajayi T, Kanawong R, Yu J, Xu D, Li S, Duan Y. Proceedings - 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2012; 288-294.
Date published:
October 4, 2012
Featured in this article:
Dong Xu.
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Root Secreted Metabolites and Proteins Are Involved in the Early Events of Plant-Plant Recognition Prior to Competition. Badri DV, de-la-Peña C, Lei Z, Manter DK, Chaparro JM, Guimarães RL, Sumner LW, Vivanco JM. PLoS ONE; 7(10):e46640.
Date published:
October 2, 2012
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Lloyd Sumner.
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SMN-inducing compounds for the treatment of spinal muscular atrophy. Lorson MA, Lorson CL. Future Medicinal Chemistry; 4(16):2067-2084.
Date published:
October 1, 2012
Featured in this article:
Monique Lorson,
Christian Lorson.
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P2X7 receptor activation induces inflammatory responses in salivary gland epithelium. Woods LT, Camden JM, Batek JM, Petris MJ, Erb L, Weisman GA. American Journal of Physiology - Cell Physiology; 303(7):C790-C801.
Date published:
October 1, 2012
Featured in this article:
Michael Petris,
Gary Weisman.
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A fully resolved chloroplast phylogeny of the brassica crops and wild relatives (Brassicaceae: Brassiceae): Novel clades and potential taxonomic implications. Arias T, Chris Pires J. Taxon; 61(5):980-988.
Date published:
October 1, 2012
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Metabolic and evolutionary costs of herbivory defense: Systems biology of glucosinolate synthesis. Bekaert M, Edger PP, Hudson CM, Pires J, Conant GC. New Phytologist; 196(2):596-605.
Date published:
October 1, 2012
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Modulation of protein phosphorylation, N-glycosylationand Lys-acetylation in grape (Vitis vinifera) mesocarp and exocarp owing to Lobesia botrana infection. Melo-Braga MN, Verano-Braga T, León IR, Antonacci D, Nogueira FCS, Thelen JJ, Larsen MR, Palmisano G. Molecular and Cellular Proteomics; 11(10):945-956.
Date published:
October 1, 2012
Featured in this article:
Jay Thelen.
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Digital gene expression for non-model organisms (Genome Research (2011) 21, (1905-1915)). Hong LZ, Li J, Schmidt-Küntzel A, Warren WC, Barsh GS. Genome Research; 22(10):2088.
Date published:
October 1, 2012
Featured in this article:
Wes Warren.
Semi-automated tracking of muscle satellite cells in brightfield microscopy video. Chowdhury AS, Paul A, Bunyak F, Cornelison DDW, Palaniappan K. 2012 19th IEEE International Conference on Image Processing; 2012:2825-2828.
Date published:
September 30, 2012
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D Cornelison.
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Specifying and sustaining pigmentation patterns in domestic and wild cats. Kaelin CB, Xu X, Hong LZ, David VA, McGowan KA, Schmidt-Küntzel A, Roelke ME, Pino J, Pontius J, Cooper GM, Manuel H, Swanson WF, Marker L, Harper CK, Van Dyk A, Yue B, Mullikin JC, Warren WC, Eizirik E, Kos L, O'Brien SJ, Barsh GS, Menotti-Raymond M. Science; 337(6101):1536-1541.
Date published:
September 21, 2012
Featured in this article:
Wes Warren.
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Identification of a promising drug candidate for the treatment of type 2 diabetes based on a P2Y₁ receptor agonist. Yelovitch S, Barr HM, Camden J, Weisman GA, Shai E, Varon D, Fischer B. Journal of Medical Chemistry; 55(17):7623-7635.
Date published:
September 13, 2012
Featured in this article:
Gary Weisman.
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P³DB: An integrated database for plant protein phosphorylation. Yao Q, Bollinger C, Gao J, Xu D, Thelen JJ. Frontiers in Plant Science; 3(SEP):206.
Date published:
September 7, 2012
Featured in this article:
Dong Xu,
Jay Thelen.
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Identifying antigenicity-associated sites in highly pathogenic H5N1 influenza virus hemagglutinin by using sparse learning. Cai Z, Ducatez MF, Yang J, Zhang T, Long L-P, Boon AC, Webby RJ, Wan X-F. Journal of Molecular Biology; 422(1):145-155.
Date published:
September 7, 2012
Featured in this article:
XiuFeng “Henry” Wan.
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Analysis of a read-through promoting compound in a severe mouse model of spinal muscular atrophy. Mattis VB, Tom Chang C-W, Lorson CL. Neuroscience Letters; 525(1):72-75.
Date published:
September 6, 2012
Featured in this article:
Christian Lorson.
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Determination of primary sequence specificity of Arabidopsis MAPKs MPK3 and MPK6 leads to identification of new substrates. Sörensson C, Lenman M, Veide-Vilg J, Schopper S, Ljungdahl T, Grøtli M, Tamás MJ, Peck SC, Andreasson E. Biochemical Journal; 446(2):271-278.
Date published:
September 1, 2012
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Scott Peck.
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Severe acute respiratory syndrome coronavirus replication inhibitor that interferes with the nucleic acid unwinding of the viral helicase. Adedeji AO, Singh K, Calcaterra NE, DeDiego ML, Enjuanes L, Weiss S, Sarafianos SG. Antimicrobial Agents and Chemotherapy; 56(9):4718-4728.
Date published:
September 1, 2012
Featured in this article:
Kamlendra Singh.
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LYK4, a lysin motif receptor-like kinase, is important for chitin signaling and plant innate immunity in Arabidopsis. Wan J, Tanaka K, Zhang X-C, Son GH, Brechenmacher L, Nguyen THN, Stacey G. Plant Physiology; 160(1):396-406.
Date published:
September 1, 2012
Featured in this article:
Gary Stacey.
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Population-environment drivers of H5N1 avian influenza molecular change in Vietnam. Carrel MA, Emch M, Nguyen T, Todd Jobe R, Wan X-F. Health and Place; 18(5):1122-1131.
Date published:
September 1, 2012
Featured in this article:
XiuFeng “Henry” Wan.
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Lessons from Emergence of A/Goose/Guangdong/1996-Like H5N1 Highly Pathogenic Avian Influenza Viruses and Recent Influenza Surveillance Efforts in Southern China. Wan X-F. Zoonoses and Public Health; 59(SUPPL.2):32-42.
Date published:
September 1, 2012
Featured in this article:
XiuFeng “Henry” Wan.
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Neuroprotective roles of the P2Y₂ receptor. Weisman GA, Ajit D, Garrad R, Peterson TS, Woods LT, Thebeau C, Camden JM, Erb L. Purinergic Signalling; 8(3):559-578.
Date published:
September 1, 2012
Featured in this article:
Gary Weisman.
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Model systems for studying trophoblast differentiation from human pluripotent stem cells. Ezashi T, Telugu BPVL, Roberts RM. Cell and Tissue Research; 349(3):809-824.
Date published:
September 1, 2012
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Reconstructing differentially co-expressed gene modules and regulatory networks of soybean cells. Zhu M, Deng X, Joshi T, Xu D, Stacey G, Cheng J. BMC Genomics; 13(1):437.
Date published:
August 31, 2012
Featured in this article:
Trupti Joshi,
Dong Xu,
Gary Stacey.
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Environmental effects on allergen levels in commercially grown non-genetically modified soybeans: Assessing variation across North America. Stevenson SE, Woods CA, Hong B, Kong X, Thelen JJ, Ladics GS. Frontiers in Plant Science; 3(AUG):196.
Date published:
August 27, 2012
Featured in this article:
Jay Thelen.
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HIV-1 reverse transcriptase (RT) polymorphism 172K suppresses the effect of clinically relevant drug resistance mutations to both nucleoside and non-nucleoside RT inhibitors. Hachiya A, Marchand B, Kirby KA, Michailidis E, Tu X, Palczewski K, Ong YT, Li Z, Griffin DT, Schuckmann MM, Tanuma J, Oka S, Singh K, Kodama EN, Sarafianos SG. Journal of Biological Chemistry; 287(35):29988-29999.
Date published:
August 24, 2012
Featured in this article:
Kamlendra Singh.
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Predicting and analyzing protein phosphorylation sites in plants using Musite. Yao Q, Gao J, Bollinger C, Thelen JJ, Xu D. Frontiers in Plant Science; 3(AUG):186.
Date published:
August 21, 2012
Featured in this article:
Jay Thelen,
Dong Xu.
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Conditional knockout of the menkes disease copper transporter demonstrates its critical role in embryogenesis. Wang Y, Zhu S, Weisman GA, Gitlin JD, Petris MJ. PLoS ONE; 7(8):e43039.
Date published:
August 10, 2012
Featured in this article:
Gary Weisman,
Michael Petris.
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A small ribozyme with dual-site kinase activity. Biondi E, Maxwell AWR, Burke DH. Nucleic Acids Research; 40(15):7528-7540.
Date published:
August 1, 2012
Featured in this article:
Donald Burke-Agüero.
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A non-human primate system for large-scale genetic studies of complex traits. Jasinska AJ, Lin MK, Service S, Choi O-W, DeYoung J, Grujic O, Kong S-Y, Jung Y, Jorgensen MJ, Fairbanks LA, Turner T, Cantor RM, Wasserscheid J, Dewar K, Warren W, Wilson RK, Weinstock G, Jentsch JD, Freimer NB. Human Molecular Genetics; 21(15):3307-3316.
Date published:
August 1, 2012
Featured in this article:
Wes Warren.
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P2 receptors for extracellular nucleotides in the central nervous system: Role of P2X7 and P2Y₂ receptor interactions in neuroinflammation. Weisman GA, Camden JM, Peterson TS, Ajit D, Woods LT, Erb L. Molecular Neurobiology; 46(1):96-113.
Date published:
August 1, 2012
Featured in this article:
Gary Weisman.
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Induced pluripotent stem cells from pigs and other ungulate species: An alternative to embryonic stem cells?. Ezashi T, Telugu BPVL, Roberts RM. Reproduction in Domestic Animals; 47(SUPPL.4):92-97.
Date published:
August 1, 2012
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“Scanning mutagenesis” of the amino acid sequences flanking phosphorylation site 1 of the mitochondrial pyruvate dehydrogenase complex. Ahsan N, Swatek KN, Zhang J, Miernyk JA, Xu D, Thelen JJ. Frontiers in Plant Science; 3(JUL):153.
Date published:
July 16, 2012
Featured in this article:
Dong Xu,
Jay Thelen.
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Effector-triggered immunity signaling: From gene-for-gene pathways to protein-protein interaction networks. Gassmann W, Bhattacharjee S. Molecular Plant-Microbe Interactions; 25(7):862-868.
Date published:
July 1, 2012
Featured in this article:
Walter Gassmann.
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A triclade DNA vaccine designed on the basis of a comprehensive serologic study elicits neutralizing antibody responses against all clades and subclades of highly pathogenic avian influenza H5N1 Viruses. Zhou F, Wang G, Buchy P, Cai Z, Chen H, Chen Z, Cheng G, Wan X-F, Deubel V, Zhou P. Journal of Virology; 86(12):6970-6978.
Date published:
July 1, 2012
Featured in this article:
XiuFeng “Henry” Wan.
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Large-scale proteome comparative analysis of developing rhizomes of the ancient vascular plant Equisetum hyemale. Balbuena TS, He R, Salvato F, Gang DR, Thelen JJ. Frontiers in Plant Science; 3(JUN):131.
Date published:
June 26, 2012
Featured in this article:
Jay Thelen.
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Current cell models for bioengineering a salivary gland: A mini-review of emerging technologies. Nelson J, Manzella K, Baker OJ. Oral Diseases; 19(3):236-244.
Date published:
June 18, 2012
Featured in this article:
Olga Baker.
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Structure, function and diversity of the healthy human microbiome. Huttenhower C, Gevers D, Knight R, Abubucker S, Badger JH, Chinwalla AT, Creasy HH, Earl AM, Fitzgerald MG, Fulton RS, Giglio MG, Hallsworth-Pepin K, Lobos EA, Madupu R, Magrini V, Martin JC, Mitreva M, Muzny DM, Sodergren EJ, Versalovic J, Wollam AM, Worley KC, Wortman JR, Young SK, Zeng Q, Aagaard KM, Abolude OO, Allen-Vercoe E, Alm EJ, Alvarado L, Andersen GL, Anderson S, Appelbaum E, Arachchi HM, Armitage G, Arze CA, Ayvaz T, Baker CC, Begg L, Belachew T, Bhonagiri V, Bihan M, Blaser MJ, Bloom T, Bonazzi V, Paul Brooks J, Buck GA, Buhay CJ, Busam DA, Campbell JL, Canon SR, Cantarel BL, Chain PSG, Chen I-MA, Chen L, Chhibba S, Chu K, Ciulla DM, Clemente JC, Clifton SW, Conlan S, Crabtree J, Cutting MA, Davidovics NJ, Davis CC, Desantis TZ, Deal C, Delehaunty KD, Dewhirst FE, Deych E, Ding Y, Dooling DJ, Dugan SP, Michael Dunne W, Scott Durkin A, Edgar RC, Erlich RL, Farmer CN, Farrell RM, Faust K, Feldgarden M, Felix VM, Fisher S, Fodor AA, Forney LJ, Foster L, Di Francesco V, Friedman J, Friedrich DC, Fronick CC, Fulton LL, Gao H, Garcia N, Giannoukos G, Giblin C, Giovanni MY, Goldberg JM, Goll J, Gonzalez A, Griggs A, Gujja S, Kinder Haake S, Haas BJ, Hamilton HA, Harris EL, Hepburn TA, Herter B, Hoffmann DE, Holder ME, Howarth C, Huang KH, Huse SM, Izard J, Jansson JK, Jiang H, Jordan C, Joshi V, Katancik JA, Keitel WA, Kelley ST, Kells C, King NB, Knights D, Kong HH, Koren O, Koren S, Kota KC, Kovar CL, Kyrpides NC, La Rosa PS, Lee SL, Lemon KP, Lennon N, Lewis CM, Lewis L, Ley RE, Li K, Liolios K, Liu B, Liu Y, Lo C-C, Lozupone CA, Dwayne Lunsford R, Madden T, Mahurkar AA, Mannon PJ, Mardis ER, Markowitz VM, Mavromatis K, McCorrison JM, McDonald D, McEwen J, McGuire AL, McInnes P, Mehta T, Mihindukulasuriya KA, Miller JR, Minx PJ, Newsham I, Nusbaum C, Oglaunghlin M, Orvis J, Pagani I, Palaniappan K, Patel SM, Pearson M, Peterson J, Podar M, Pohl C, Pollard KS, Pop M, Priest ME, Proctor LM, Qin X, Raes J, Ravel J, Reid JG, Rho M, Rhodes R, Riehle KP, Rivera MC, Rodriguez-Mueller B, Rogers Y-H, Ross MC, Russ C, Sanka RK, Sankar P, Fah Sathirapongsasuti J, Schloss JA, Schloss PD, Schmidt TM, Scholz M, Schriml L, Schubert AM, Segata N, Segre JA, Shannon WD, Sharp RR, Sharpton TJ, Shenoy N, Sheth NU, Simone GA, Singh I, Smillie CS, Sobel JD, Sommer DD, Spicer P, Sutton GG, Sykes SM, Tabbaa DG, Thiagarajan M, Tomlinson CM, Torralba M, Treangen TJ, Truty RM, Vishnivetskaya TA, Walker J, Wang L, Wang Z, Ward DV, Warren W, Watson MA, Wellington C, Wetterstrand KA, White JR, Wilczek-Boney K, Wu Y, Wylie KM, Wylie T, Yandava C, Ye L, Ye Y, Yooseph S, Youmans BP, Zhang L, Zhou Y, Zhu Y, Zoloth L, Zucker JD, Birren BW, Gibbs RA, Highlander SK, Methé BA, Nelson KE, Petrosino JF, Weinstock GM, Wilson RK, White O. Nature; 486(7402):207-214.
Date published:
June 14, 2012
Featured in this article:
Wes Warren.
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A framework for human microbiome research. Methé BA, Nelson KE, Pop M, Creasy HH, Giglio MG, Huttenhower C, Gevers D, Petrosino JF, Abubucker S, Badger JH, Chinwalla AT, Earl AM, Fitzgerald MG, Fulton RS, Hallsworth-Pepin K, Lobos EA, Madupu R, Magrini V, Martin JC, Mitreva M, Muzny DM, Sodergren EJ, Versalovic J, Wollam AM, Worley KC, Wortman JR, Young SK, Zeng Q, Aagaard KM, Abolude OO, Allen-Vercoe E, Alm EJ, Alvarado L, Andersen GL, Anderson S, Appelbaum E, Arachchi HM, Armitage G, Arze CA, Ayvaz T, Baker CC, Begg L, Belachew T, Bhonagiri V, Bihan M, Blaser MJ, Bloom T, Bonazzi VR, Brooks P, Buck GA, Buhay CJ, Busam DA, Campbell JL, Canon SR, Cantarel BL, Chain PS, Chen I-MA, Chen L, Chhibba S, Chu K, Ciulla DM, Clemente JC, Clifton SW, Conlan S, Crabtree J, Cutting MA, Davidovics NJ, Davis CC, Desantis TZ, Deal C, Delehaunty KD, Dewhirst FE, Deych E, Ding Y, Dooling DJ, Dugan SP, Michael Dunne W, Scott Durkin A, Edgar RC, Erlich RL, Farmer CN, Farrell RM, Faust K, Feldgarden M, Felix VM, Fisher S, Fodor AA, Forney L, Foster L, Di Francesco V, Friedman J, Friedrich DC, Fronick CC, Fulton LL, Gao H, Garcia N, Giannoukos G, Giblin C, Giovanni MY, Goldberg JM, Goll J, Gonzalez A, Griggs, A, Gujja S, Haas BJ, Hamilton HA, Harris EL, Hepburn TA, Herter B, Hoffmann DE, Holder ME, Howarth C, Huang KH, Huse SM, Izard J, Jansson JK, Jiang H, Jordan C, Joshi V, Katancik JA, Keitel WA, Kelley ST, Kells C, Kinder-Haake S, King NB, Knight R, Knights D, Kong HH, Koren O, Koren S, Kota KC, Kovar CL, Kyrpides NC, La Rosa PS, Lee SL, Lemon KP, Lennon N, Lewis CW, Lewis L, Ley RE, Li K, Liolios K, Liu B, Liu Y, Lo C-C, Lozipone CA, Dwayne Lunsford R, Madden T, Mahurkar AA, Mannon PJ, Mardis ER, Markowitz VM, Mavrommatis K, McCorrison JM, McDonald D, McEwen J, McGuire AL, McInnes P, Mehta T, Mihindukulasuriya KA, Miller JR, Minx PJ, Newsham I, Nusbaum C, O'Laughlin M, Orvis J, Pagani I, Palaniappan K, Patel SM, Pearson M, Peterson J, Podar M, Pohl C, Pollard KS, Priest ME, Proctor LM, Qin X, Raes J, Ravel J, Reid JG, Rho M, Rhodes R, Riehle KP, Rivera MC, Rodriguez-Mueller B, Rogers Y-H, Ross MC, Russ C, Sanka RK, Sankar P, Fah Sathirapongsasuti J, Schloss JA, Schloss PD, Scmidt TM, Scholz M, Schriml L, Schubert AM, Segata N, Segre JA, Shannon WD, Sharp RR, Sharpton TJ, Shenoy N, Sheth NU, Simone GA, Singh I, Smillie CS, Sobel JD, Sommer DD, Spicer P, Sutton GG, Sykes SM, Tabbaa DG, Thiagarajan M, Tomlinson CM, Torralba M, Treangen TJ, Truty RM, Vishnivetskaya TA, Walker J, Wang L, Wang Z, Ward DV, Warren W, Watson MA, Wellington C, Wetterstrand KA, White JR, Wilczek-Boney K, Qing Wu Y, Wylie KM, Wylie T, Yandava C, Ye L, Ye Y, Yooseph S, Youmans BP, Zhang L, Zhou Y, Zhu Y, Zoloth L, Zucker JD, Birren BW, Gibbs RA, Highlander SK, Weinstock GM, Wilson RK, White O. Nature; 486(7402):215-221.
Date published:
June 14, 2012
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Wes Warren.
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Deciphering energy-associated gene networks operating in the response of Arabidopsis plants to stress and nutritional cues. Avin-Wittenberg T, Tzin V, Angelovici R, Less H, Galili G. Plant Journal; 70(6):954-966.
Date published:
June 1, 2012
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Ruthie Angelovici.
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Feedback inhibition by thiols outranks glutathione depletion: A luciferase-based screen reveals glutathione-deficient γ-ECS and glutathione synthetase mutants impaired in cadmium-induced sulfate assimilation. Jobe TO, Sung D-Y, Akmakjian G, Pham A, Komives EA, Mendoza-Cózatl DG, Schroeder JI. Plant Journal; 70(5):783-795.
Date published:
June 1, 2012
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David Mendoza-Cózatl.
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Seed colour loci, homoeology and linkage groups of the C genome chromosomes revealed in Brassica rapaB. oleracea monosomic alien addition lines. Heneen WK, Geleta M, Brismar K, Xiong Z, Pires JC, Hasterok R, Stoute AI, Scott RJ, King GJ, Kurup S. Annals of Botany; 109(7):1227-1242.
Date published:
June 1, 2012
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Allopolyploidization lays the foundation for evolution of distinct populations: Evidence from analysis of synthetic arabidopsis allohexaploids. Matsushita SC, Tyagi AP, Thornton GM, Pires JC, Madlung A. Genetics; 191(2):535-547.
Date published:
June 1, 2012
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MET-IDEA version 2.06; improved efficiency and additional functions for mass spectrometry-based metabolomics data processing. Lei Z, Li H, Chang J, Zhao PX, Sumner LW. Metabolomics; 8:105-110.
Date published:
June 1, 2012
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Lloyd Sumner.
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The proteomic future: Where mass spectrometry should be taking us. Thelen JJ, Miernyk JA. Biochemical Journal; 444(2):169-181.
Date published:
June 1, 2012
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Jay Thelen.
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The absence of heat shock protein HSP101 affects the proteome of mature and germinating maize embryos. Lázaro-Mixteco PE, Nieto-Sotelo J, Swatek KN, Houston NL, Mendoza-Hernández G, Thelen JJ, Dinkova TD. Journal of Proteome Research; 11(6):3246-3258.
Date published:
June 1, 2012
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Jay Thelen.
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Protein structure prediction and clustering using MUFOLD. Zhang J, Xu D. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); 7292 LNBI:328-329.
Date published:
May 21, 2012
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Dong Xu.
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Escape from preferential retention following repeated whole genome duplications in plants. Schnable JC, Wang X, Pires JC, Freeling M. Frontiers in Plant Science; 3(MAY):94.
Date published:
May 15, 2012
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Long identical multispecies elements in plant and animal genomes. Reneker J, Lyons E, Conant GC, Pires JC, Freeling M, Shyu C-R, Korkin D. Proceedings of the National Academy of Sciences of the United States of America; 109(19):E1183-E1191.
Date published:
May 8, 2012
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Resolvin D1 prevents TNF-α-mediated disruption of salivary epithelial formation. Odusanwo O, Chinthamani S, McCall A, Duffey ME, Baker OJ. American Journal of Physiology - Cell Physiology; 302(9):C1331-C1345.
Date published:
May 1, 2012
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Olga Baker.
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Partial restoration of cardio-vascular defects in a rescued severe model of spinal muscular atrophy. Shababi M, Habibi J, Ma L, Glascock JJ, Sowers JR, Lorson CL. Journal of Molecular and Cellular Cardiology; 52(5):1074-1082.
Date published:
May 1, 2012
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Christian Lorson.
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Characterization of Arabidopsis NEET reveals an ancient role for NEET proteins in iron metabolism. Nechushtai R, Conlan AR, Harir Y, Song L, Yogev O, Eisenberg-Domovich Y, Livnah O, Michaeli D, Rosen R, Ma V, Luo Y, Zuris JA, Paddock ML, Cabantchik ZI, Jennings PA, Mittler R. Plant Cell; 24(5):2139-2154.
Date published:
May 1, 2012
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Ron Mittler.
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Phylogeny of the Asparagales based on three plastid and two mitochondrial genes. Seberg O, Petersen G, Davis JI, Chris Pires J, Stevenson DW, Chase MW, Fay MF, Devey DS, Jørgensen T, Sytsma KJ, Pillon Y. American Journal of Botany; 99(5):875-889.
Date published:
May 1, 2012
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Characterization of an isoflavonoid-specific prenyltransferase from Lupinus albus. Shen G, Huhman D, Lei Z, Snyder J, Sumner LW, Dixon RA. Plant Physiology; 159(1):70-80.
Date published:
May 1, 2012
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Lloyd Sumner.
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Phosphoproteomic analysis of seed maturation in arabidopsis, rapeseed, and soybean. Meyer LJ, Gao J, Xu D, Thelen JJ. Plant Physiology; 159(1):517-528.
Date published:
May 1, 2012
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Dong Xu,
Jay Thelen.
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AntigenMap 3D: An online antigenic cartography resource. Barnett JL, Yang J, Cai Z, Zhang T, Wan X-F. Bioinformatics; 28(9):1292-1293.
Date published:
May 1, 2012
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XiuFeng “Henry” Wan.
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Using internet search engines to obtain medical information: A comparative study. Wang L, Wang J, Wang M, Li Y, Liang Y, Xu D. Journal of Medical Internet Research; 14(3):E74.
Date published:
May 1, 2012
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Dong Xu.
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High-efficiency TALEN-based gene editing produces disease-resistant rice. Li T, Liu B, Spalding MH, Weeks DP, Yang B. Nature Biotechnology; 30(5):390-392.
Date published:
May 1, 2012
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Bing Yang.
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Effect of glucose concentration during in vitro culture of mouse embryos on development to blastocyst, success of embryo transfer, and litter sex ratio. Bermejo-Alvarez P, Roberts RM, Rosenfeld CS. Molecular Reproduction and Development; 79(5):329-336.
Date published:
May 1, 2012
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Squelching of ETS2 transactivation by POU5F1 silences the human chorionic gonadotropin CGA subunit gene in human choriocarcinoma and embryonic stem cells. Gupta R, Ezashi T, Michael Roberts R. Molecular Endocrinology; 26(5):859-872.
Date published:
May 1, 2012
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Copper homeostasis at the host-pathogen interface. Hodgkinson V, Petris MJ. Journal of Biological Chemistry; 287(17):13549-13555.
Date published:
April 20, 2012
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Michael Petris.
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Separating and analyzing sulfur-containing rnas with organomercury gels. Biondi E, Burke DH. Methods in Molecular Biology; 883:111-120.
Date published:
April 6, 2012
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Donald Burke-Agüero.
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Lipoxin A 4 inhibits immune cell binding to salivary epithelium and vascular endothelium. Chinthamani S, Odusanwo O, Mondal N, Nelson J, Neelamegham S, Baker OJ. American Journal of Physiology - Cell Physiology; 302(7):C968-C978.
Date published:
April 1, 2012
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Olga Baker.
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CRM1-dependent trafficking of retroviral Gag proteins Revisited. Baluyot MF, Grosse SA, Lyddon TD, Janaka SK, Johnson MC. Journal of Virology; 86(8):4696-4700.
Date published:
April 1, 2012
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Marc Johnson.
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Nucleotides released from Aβ 1-42-treated microglial cells increase cell migration and Aβ 1-42 uptake through P2Y 2 receptor activation. Kim HJ, Ajit D, Peterson TS, Wang Y, Camden JM, Wood WG, Sun GY, Erb L, Petris M, Weisman GA. Journal of Neurochemistry; 121(2):228-238.
Date published:
April 1, 2012
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Michael Petris,
Gary Weisman.
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Altered patterns of fractionation and exon deletions in Brassica rapa support a two-step model of paleohexaploidy. Tang H, Woodhouse MR, Cheng F, Schnable JC, Pedersen BS, Conant G, Wang X, Freeling M, Pires JC. Genetics; 190(4):1563-1574.
Date published:
April 1, 2012
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Getting up to speed. Van de Peer Y, Pires JC. Current Opinion in Plant Biology; 15(2):111-114.
Date published:
April 1, 2012
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Structural and inhibition studies of the RNase H function of xenotropic murine leukemia virus-related virus reverse transcriptase. Kirby KA, Marchand B, Ong YT, Ndongwe TP, Hachiya A, Michailidis E, Leslie MD, Sietsema DV, Fetterly TL, Dorst CA, Singh K, Wang Z, Parniak MA, Sarafianos SG. Antimicrobial Agents and Chemotherapy; 56(4):2048-2061.
Date published:
April 1, 2012
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Kamlendra Singh.
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Expression of a bacterial feedback-insensitive 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase of the shikimate pathway in Arabidopsis elucidates potential metabolic bottlenecks between primary and secondary metabolism. Tzin V, Malitsky S, Zvi MMB, Bedair M, Sumner L, Aharoni A, Galili G. New Phytologist; 194(2):430-439.
Date published:
April 1, 2012
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Lloyd Sumner.
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A quantitative structure-activity relationship (QSAR) study on glycan array data to determine the specificities of glycan-binding proteins. Xuan P, Zhang Y, Tzeng T-RJ, Wan X-F, Luo F. Glycobiology; 22(4):552-560.
Date published:
April 1, 2012
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XiuFeng “Henry” Wan.
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AP-2β regulates amyloid beta-protein stimulation of apolipoprotein e transcription in astrocytes. Rossello XS, Igbavboa U, Weisman GA, Sun GY, Wood WG. Brain Research; 1444:87-95.
Date published:
March 20, 2012
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Gary Weisman.
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Insights into hominid evolution from the gorilla genome sequence. Scally A, Dutheil JY, Hillier LW, Jordan GE, Goodhead I, Herrero J, Hobolth A, Lappalainen T, Mailund T, Marques-Bonet T, McCarthy S, Montgomery SH, Schwalie PC, Tang YA, Ward MC, Xue Y, Yngvadottir B, Alkan C, Andersen LN, Ayub Q, Ball EV, Beal K, Bradley BJ, Chen Y, Clee CM, Fitzgerald S, Graves TA, Gu Y, Heath P, Heger A, Karakoc E, Kolb-Kokocinski A, Laird GK, Lunter G, Meader S, Mort M, Mullikin JC, Munch K, O'Connor TD, Phillips AD, Prado-Martinez J, Rogers AS, Sajjadian S, Schmidt D, Shaw K, Simpson JT, Stenson PD, Turner DJ, Vigilant L, Vilella AJ, Whitener W, Zhu B, Cooper DN, De Jong P, Dermitzakis ET, Eichler EE, Flicek P, Goldman N, Mundy NI, Ning Z, Odom DT, Ponting CP, Quail MA, Ryder OA, Searle SM, Warren WC, Wilson RK, Schierup MH, Rogers J, Tyler-Smith C, Durbin R. Nature; 483(7388):169-175.
Date published:
March 8, 2012
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Wes Warren.
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Gold Nanoparticle-Mediated Detection of Circulating Cancer Cells. Bhattacharyya K, Goldschmidt BS, Hannink M, Alexander S, Jurkevich A, Viator JA. Clinics in Laboratory Medicine; 32(1):89-101.
Date published:
March 1, 2012
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Transgenic inactivation of murine myostatin does not decrease the severity of disease in a model of Spinal Muscular Atrophy. Rindt H, Buckley DM, Vale SM, Krogman M, Rose FF, Garcia ML, Lorson CL. Neuromuscular Disorders; 22(3):277-285.
Date published:
March 1, 2012
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Christian Lorson.
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Decreasing disease severity in symptomatic, Smn-/-;SMN2 ++, spinal muscular atrophy mice following scAAV9-SMN delivery. Glascock JJ, Osman EY, Wetz MJ, Krogman MM, Shababi M, Lorson CL. Human Gene Therapy; 23(3):330-335.
Date published:
March 1, 2012
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Christian Lorson.
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Optimization of SMN trans-splicing through the analysis of SMN introns. Shababi M, Lorson CL. Journal of Molecular Neuroscience; 46(3):459-469.
Date published:
March 1, 2012
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Christian Lorson.
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How do plants feel the heat?. Mittler R, Finka A, Goloubinoff P. Trends in Biochemical Sciences; 37(3):118-125.
Date published:
March 1, 2012
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Ron Mittler.
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Mechanism of interaction of human mitochondrial DNA polymerase γ with the novel nucleoside reverse transcriptase inhibitor 4′-ethynyl-2-fluoro- 2′-deoxyadenosine indicates a low potential for host toxicity. Sohl CD, Singh K, Kasiviswanathan R, Copeland WC, Mitsuya H, Sarafianos SG, Anderson KS. Antimicrobial Agents and Chemotherapy; 56(3):1630-1634.
Date published:
March 1, 2012
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Kamlendra Singh.
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Integration of the draft sequence and physical map as a framework for genomic research in soybean (glycine max (l.) merr.) and wild soybean (glycine soja sieb. and zucc.). Ha J, Abernathy B, Nelson W, Grant D, Wu X, Nguyen HT, Stacey G, Yu Y, Wing RA, Shoemaker RC, Jackson SA. G3: Genes, Genomes, Genetics; 2(3):321-329.
Date published:
March 1, 2012
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Gary Stacey.
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Highly pathogenic H5N1 avian influenza viruses exhibit few barriers to gene flow in Vietnam. Carrel M, Wan X-F, Nguyen T, Emch M. EcoHealth; 9(1):60-69.
Date published:
March 1, 2012
Featured in this article:
XiuFeng “Henry” Wan.
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Strict evolutionary conservation followed rapid gene loss on human and rhesus y chromosomes. Hughes JF, Skaletsky H, Brown LG, Pyntikova T, Graves T, Fulton RS, Dugan S, Ding Y, Buhay CJ, Kremitzki C, Wang Q, Shen H, Holder M, Villasana D, Nazareth LV, Cree A, Courtney L, Veizer J, Kotkiewicz H, Cho T-J, Koutseva N, Rozen S, Muzny DM, Warren WC, Gibbs RA, Wilson RK, Page DC. Nature; 483(7387):82-87.
Date published:
March 1, 2012
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Wes Warren.
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Computational challenges in characterization of bacteria and bacteria-host interactions based on genomic data. Zhang C, Zheng G, Xu S-F, Xu D. Journal of Computer Science and Technology; 27(2):225-239.
Date published:
March 1, 2012
Featured in this article:
Dong Xu.
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Metabolomics as a hypothesis-generating functional genomics tool for the annotation of Arabidopsis thaliana genes of “unknown function”. Quanbeck SM, Brachova L, Campbell AA, Guan X, Perera A, He K, Rhee SY, Bias P, Dickerson JA, Dixon P, Wohlgemuth G, Fiehn O, Barkan L, Lange I, Markus Lange B, Lee I, Cortes D, Salazar C, Shuman J, Shulaev V, Huhman DV, Sumner LW, Roth MR, Welti R, Ilarslan H, Wurtele ES, Nikolau BJ. Frontiers in Plant Science; 3(FEB):15.
Date published:
February 10, 2012
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Lloyd Sumner.
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Cell-penetrating RNAs: New keys to the castle. Burke DH. Molecular Therapy; 20(2):251-253.
Date published:
February 1, 2012
Featured in this article:
Donald Burke-Agüero.
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Hormone signaling in plant development. Durbak A, Yao H, McSteen P. Current Opinion in Plant Biology; 15(1):92-96.
Date published:
February 1, 2012
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Paula McSteen.
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ROS and redox signalling in the response of plants to abiotic stress. Suzuki N, Koussevitzky S, Mittler R, Miller G. Plant, Cell and Environment; 35(2):259-270.
Date published:
February 1, 2012
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Ron Mittler.
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Phylogenomic analysis of transcriptome data elucidates co-occurrence of a paleopolyploid event and the origin of bimodal karyotypes in Agavoideae (Asparagaceae). McKain MR, Wickett N, Zhang Y, Ayyampalayam S, Richard McCombie W, Chase MW, Chris Pires J, DePamphilis CW, Leebens-Mack J. American Journal of Botany; 99(2):397-406.
Date published:
February 1, 2012
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Quality and quantity of data recovered from massively parallel sequencing: Examples in asparagales and Poaceae. Roxanne Steele P, Hertweck KL, Mayfield D, McKain MR, Leebens-Mack J, Chris Pires J. American Journal of Botany; 99(2):330-348.
Date published:
February 1, 2012
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Nucleotide polymorphism in the 5.8S nrDNA gene and internal transcribed spacers in Phakopsora pachyrhizi viewed from structural models. Freire MCM, Silva MRD, Zhang X, Almeida ÁMR, Stacey G, Oliveira LOD. Fungal Genetics and Biology; 49(2):95-100.
Date published:
February 1, 2012
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Gary Stacey.
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Next-generation sequencing-based transcriptomic and proteomic analysis of the common reed, Phragmites australis (Poaceae), reveals genes involved in invasiveness and rhizome specificity. He R, Kim M-J, Nelson W, Balbuena TS, Kim R, Kramer R, Crow JA, May GD, Thelen JJ, Soderlund CA, Gang DR. American Journal of Botany; 99(2):232-247.
Date published:
February 1, 2012
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Jay Thelen.
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The genome architecture of the collaborative cross mouse genetic reference population. Iraqi FA, Mahajne M, Salaymah Y, Sandovski H, Tayem H, Vered K, Balmer L, Hall M, Manship G, Morahan G, Pettit K, Scholten J, Tweedie K, Wallace A, Weerasekera L, Cleak J, Durrant C, Goodstadt L, Mott R, Yalcin B, Aylor DL, Baric RS, Bell TA, Bendt KM, Brennan J, Brooks JD, Buus RJ, Crowley JJ, Calaway JD, Calaway ME, Cholka A, Darr DB, Didion JP, Dorman A, Everett ET, Ferris MT, Mathes WF, Fu C-P, Gooch TJ, Goodson SG, Gralinski LE, Hansen SD, Heise MT, Hoel J, Hua K, Kapita MC, Lee S, Lenarcic AB, Liu EY, Liu H, McMillan L, Magnuson TR, Manly KF, Miller DR, O'Brien DA, Odet F, Pakatci IK, Pan W, de Villena FP, Perou CM, Pomp D, Quackenbush CR, Robinson NN, Sharpless NE, Shaw GD, Spence JS, Sullivan PF, Sun W, Tarantino LM, Valdar W, Wang J, Wang W, Welsh CE, Whitmore A, Wiltshire T, Wright FA, Xie Y, Yun Z, Zhabotynsky V, Zhang Z, Zou F, Powell C, Steigerwalt J, Threadgill DW, Chesler EJ, Churchill GA, Gatti DM, Korstanje R, Svenson KL, Collins FS, Crawford N, Hunter K, Samir N, Kelada P, Peck BCE, Reilly K, Tavarez U, Bottomly D, Hitzeman R, Mcweeney SK, Frelinger J, Krovi H, Phillippi J, Spritz RA, Aicher L, Katze M, Rosenzweig E, Shusterman A, Nashef A, Weiss EI, Houri-Haddad Y, Soller M, Williams RW, Schughart K, Yang H, French JE, Benson AK, Kim J, Legge R, Low SJ, Ma F, Martinez I, Walter J, Broman KW, Hallgrimsson B, Klein O, Weinstock G, Warren WC, Yang YV, Schwartz D. Genetics; 190(2):389-401.
Date published:
February 1, 2012
Featured in this article:
Wes Warren.
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A genome triplication associated with early diversification of the core eudicots. Jiao Y, Leebens-Mack J, Ayyampalayam S, Bowers JE, McKain MR, McNeal J, Rolf M, Ruzicka DR, Wafula E, Wickett NJ, Wu X, Zhang Y, Wang J, Zhang Y, Carpenter EJ, Deyholos MK, Kutchan TM, Chanderbali AS, Soltis PS, Stevenson DW, McCombie R, Pires JC, Wong GK-S, Soltis DE, dePamphilis CW. Genome Biology; 13(1):R3.
Date published:
January 26, 2012
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Soybean knowledge base (SoyKB): A web resource for soybean translational genomics. Joshi T, Patil K, Fitzpatrick MR, Franklin LD, Yao Q, Cook JR, Wang Z, Libault M, Brechenmacher L, Valliyodan B, Wu X, Cheng J, Stacey G, Nguyen HT, Xu D. Series on Advances in Bioinformatics and Computational Biology; 13:S15.
Date published:
January 17, 2012
Featured in this article:
Trupti Joshi,
Gary Stacey,
Dong Xu.
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Boranophosphate isoster controls P2Y-receptor subtype selectivity and metabolic stability of dinucleoside polyphosphate analogues. Yelovitch S, Camden J, Weisman GA, Fischer B. Journal of Medical Chemistry; 55(1):437-448.
Date published:
January 12, 2012
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Gary Weisman.
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Direct central nervous system delivery provides enhanced protection following vector mediated gene replacement in a severe model of Spinal Muscular Atrophy. Glascock JJ, Shababi M, Wetz MJ, Krogman MM, Lorson CL. Biochemical and Biophysical Research Communications; 417(1):376-381.
Date published:
January 6, 2012
Featured in this article:
Christian Lorson.
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Antigenic distance measurements for seasonal influenza vaccine selection. Cai Z, Zhang T, Wan X-F. Vaccine; 30(2):448-453.
Date published:
January 5, 2012
Featured in this article:
XiuFeng “Henry” Wan.
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Correlation between posttranslational modification and intrinsic disorder in Protein. Gao J, Xu D. Pacific Symposium on Biocomputing; 94-103.
Date published:
January 3, 2012
Featured in this article:
Dong Xu.
Biochemical, inhibition and inhibitor resistance studies of xenotropic murine leukemia virus-related virus reverse transcriptase. Ndongwe TP, Adedeji AO, Michailidis E, Ong YT, Hachiya A, Marchand B, Ryan EM, Rai DK, Kirby KA, Whatley AS, Burke DH, Johnson M, Ding S, Zheng Y-M, Liu S-L, Kodama E-I, Delviks-Frankenberry KA, Pathak VK, Mitsuya H, Parniak MA, Singh K, Sarafianos SG. Nucleic Acids Research; 40(1):345-359.
Date published:
January 1, 2012
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Donald Burke-Agüero,
Marc Johnson,
Kamlendra Singh.
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Bifunctional RNAs targeting the intronic splicing silencer N1 increase SMN levels and reduce disease severity in an animal model of spinal muscular atrophy. Osman EY, Yen P-F, Lorson CL. Molecular Therapy; 20(1):119-126.
Date published:
January 1, 2012
Featured in this article:
Christian Lorson.
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Multitasking in the mitochondrion by the ATP-dependent Lon protease. Venkatesh S, Lee J, Singh K, Lee I, Suzuki CK. Biochimica et Biophysica Acta - Molecular Cell Research; 1823(1):56-66.
Date published:
January 1, 2012
Featured in this article:
Kamlendra Singh.
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Mechanism of nucleic acid unwinding by SARS-CoV helicase. Adedeji AO, Marchand B, Te Velthuis AJ, Snijder EJ, Weiss S, Eoff RL, Singh K, Sarafianos SG. PLoS ONE; 7(5):e36521.
Date published:
January 1, 2012
Featured in this article:
Kamlendra Singh.
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Characterization of catalytic carboxylate triad in non-replicative DNA polymerase III (pol E) of Geobacillus kaustophilus HTA. Sandalli C, Singh K, Modak MJ. Cellular and Molecular Biology; 58(1):44-49.
Date published:
January 1, 2012
Featured in this article:
Kamlendra Singh.
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Inhibition of P. Falciparum PfATP6 by curcumin and its derivatives: A bioinformatic study. Shukla A, Singh A, Pathak LP, Shrivastava N, Tripathi PK, Singh MP, Singh K. Cellular and Molecular Biology; 58(1):182-186.
Date published:
January 1, 2012
Featured in this article:
Kamlendra Singh.
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Preparation of biologically active single-chain variable antibody fragments that target the HIV-1 GP120 V3 loop. Ong YT, Kirby KA, Hachiya A, Chiang LA, Marchand B, Yoshimura K, Murakami T, Singh K, Matsushita S, Sarafianos SG. Cellular and Molecular Biology; 58(1):71-79.
Date published:
January 1, 2012
Featured in this article:
Kamlendra Singh.
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Structural and biochemical basis for the difference in the helicase activity of two different constructs of sars-cov helicase. Adedeji AO, Singh K, Sarafianos SG. Cellular and Molecular Biology; 58(1):115-121.
Date published:
January 1, 2012
Featured in this article:
Kamlendra Singh.
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Effect of translocation defective reverse transcriptase inhibitors on the activity of n348i, A connection subdomain drug resistant HIV-1 reverse transcriptase mutant. Michailidis E, Singh K, Ryan EM, Hachiya A, Ong YT, Kirby KA, Marchand B, Kodama EN, Mitsuya H, Parniak MA, Sarafianos SG. Cellular and Molecular Biology; 58(1):187-195.
Date published:
January 1, 2012
Featured in this article:
Kamlendra Singh.
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Ethylene-responsive element-binding factor 5, ERF5, is involved in chitin-induced innate immunity response. Son GH, Wan J, Kim HJ, Nguyen XC, Chung WS, Hong JC, Stacey G. Molecular Plant-Microbe Interactions; 25(1):48-60.
Date published:
January 1, 2012
Featured in this article:
Gary Stacey.
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Evolutionary dynamics of protein domain architecture in plants. Zhang X-C, Wang Z, Zhang X, Le MH, Sun J, Xu D, Cheng J, Stacey G. BMC Evolutionary Biology; 12(1):6.
Date published:
January 1, 2012
Featured in this article:
Dong Xu,
Gary Stacey.
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Genetic diversity and origins of Phakopsora pachyrhizi isolates in the United States. Zhang XC, Freire MCM, Le MH, De Oliveira LO, Pitkin JW, Segers G, Concibido VC, Baley GJ, Hartman GL, Upchurch G, Pedley KF, Stacey G. Asian Journal of Plant Pathology; 6(3):52-65.
Date published:
January 1, 2012
Featured in this article:
Gary Stacey.
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KiC Assay: A quantitative mass spectrometry-based approach. Huang Y, Thelen JJ. Methods in Molecular Biology; 893:359-370.
Date published:
January 1, 2012
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Jay Thelen.
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Erratum: KiC assay: A quantitative mass spectrometry-based approach for kinase client screening and activity analysis (Methods in Molecular Biology 893 (359-370) DOI: 10.1007/978-1-61779-885-6-22). Huang Y, Thelen JJ. Methods in Molecular Biology; 893:E1.
Date published:
January 1, 2012
Featured in this article:
Jay Thelen.
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Mixture model analysis reflecting dynamics of the population diversity of 2009 pandemic H1N1 influenza virus. Long L-P, Yaun C, Cai Z, Xu H, Wan X-F. In Silico Biology; 11(5):225-236.
Date published:
January 1, 2012
Featured in this article:
XiuFeng “Henry” Wan.
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Identification of transcriptome SNPs between Xiphophorus lines and species for assessing allele specific gene expression within F₁ interspecies hybrids. Shen Y, Catchen J, Garcia T, Amores A, Beldorth I, Wagner J, Zhang Z, Postlethwait J, Warren W, Schartl M, Walter RB. Comparative Biochemistry and Physiology - C Toxicology and Pharmacology; 155(1):102-108.
Date published:
January 1, 2012
Featured in this article:
Wes Warren.
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Graph accordance of next-generation sequence assemblies. Yao G, Ye L, Gao H, Minx P, Warren WC, Weinstock GM. Bioinformatics; 28(1):13-16.
Date published:
January 1, 2012
Featured in this article:
Wes Warren.
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A limited role for gene duplications in the evolution of platypus venom. Wong ESW, Papenfuss AT, Whittington CM, Warren WC, Belov K. Molecular Biology and Evolution; 29(1):167-177.
Date published:
January 1, 2012
Featured in this article:
Wes Warren.
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P2Y Receptors in the Mammalian Nervous System: Pharmacology, Ligands and Therapeutic Potential. Weisman GA, Woods LT, Erb L, Seye CI. CNS and Neurological Disorders - Drug Targets; 11(6):722-738.
Date published:
January 1, 2012
Featured in this article:
Gary Weisman.
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Protein structural model selection based on protein-dependent scoring function. He Z, Zhang J, Xu Y, Shang Y, Xu D. Statistics and its Interface; 5(1):109-117.
Date published:
January 1, 2012
Featured in this article:
Dong Xu.
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An automatic tongue detection and segmentation framework for computer-aided tongue image analysis. Kanawong R, Xu W, Xu D, Li S, Ma T, Duan Y. International Journal of Functional Informatics and Personalised Medicine; 4(1):56-68.
Date published:
January 1, 2012
Featured in this article:
Dong Xu.
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Prediction of protein tertiary structures using MUFOLD. Zhang J, He Z, Wang Q, Barz B, Kosztin I, Shang Y, Xu D. Methods in Molecular Biology; 815:3-13.
Date published:
January 1, 2012
Featured in this article:
Dong Xu.
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Automated tongue feature extraction for ZHENG classification in Traditional Chinese Medicine. Kanawong R, Obafemi-Ajayi T, Ma T, Xu D, Li S, Duan Y. Evidence-based Complementary and Alternative Medicine; 2012:912852.
Date published:
January 1, 2012
Featured in this article:
Dong Xu.
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Comparative genetics: Synergizing human and NOD mouse studies for identifying genetic causation of type 1 diabetes. Driver JP, Chen Y-G, Mathews CE. Review of Diabetic Studies; 9(4):169-187.
Date published:
January 1, 2012
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John Driver.
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2011
Polytomy identification in microbial phylogenetic reconstruction. Lin GN, Zhang C, Xu D. BMC Systems Biology; 5(SUPPL. 3):S2.
Date published:
December 23, 2011
Featured in this article:
Dong Xu.
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Eph/ephrin interactions modulate muscle satellite cell motility and patterning. Stark DA, Karvas RM, Siege AL, Cornelison DDW. Development; 138(24):5279-5289.
Date published:
December 15, 2011
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D Cornelison.
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Pathogen effectors target Arabidopsis EDS1 and alter its interactions with immune regulators. Bhattacharjee S, Halane MK, Kim SH, Gassmann W. Science; 334(6061):1405-1408.
Date published:
December 9, 2011
Featured in this article:
Walter Gassmann.
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Suppression of phospholipase Dγs confers increased aluminum resistance in Arabidopsis thaliana. Zhao J, Wang C, Bedair M, Welti R, Sumner L, Baxter I, Wang X. PLoS ONE; 6(12):e28086.
Date published:
December 7, 2011
Featured in this article:
Lloyd Sumner.
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CD34 promotes satellite cell motility and entry into proliferation to facilitate efficient skeletal muscle regeneration. Alfaro LAS, Dick SA, Siegel AL, Anonuevo AS, McNagny KM, Megeney LA, Cornelison DDW, Rossi FMV. Stem Cells; 29(12):2030-2041.
Date published:
December 1, 2011
Featured in this article:
D Cornelison.
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Modulation of phototropic responsiveness in arabidopsis through ubiquitination of phototropin 1 by the CUL3-ring E3 ubiquitin ligase CRL3 NPH3. Roberts D, Pedmale UV, Morrow J, Sachdev S, Lechner E, Tang X, Zheng N, Hannink M, Genschik P, Liscum E. Plant Cell; 23(10):3627-3640.
Date published:
December 1, 2011
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.
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Disruption of the Survival Motor Neuron (SMN) gene in pigs using ssDNA. Lorson MA, Spate LD, Samuel MS, Murphy CN, Lorson CL, Prather RS, Wells KD. Transgenic Research; 20(6):1293-1304.
Date published:
December 1, 2011
Featured in this article:
Monique Lorson,
Christian Lorson.
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Respiratory burst oxidases: The engines of ROS signaling. Suzuki N, Miller G, Morales J, Shulaev V, Torres MA, Mittler R. Current Opinion in Plant Biology; 14(6):691-699.
Date published:
December 1, 2011
Featured in this article:
Ron Mittler.
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Identification of quantitative trait loci controlling gene expression during the innate immunity response of soybean. Valdés-López O, Thibivilliers S, Qiu J, Xu WW, Nguyen THN, Libault M, Le BH, Goldberg RB, Hill CB, Hartman GL, Diers B, Stacey G. Plant Physiology; 157(4):1975-1986.
Date published:
December 1, 2011
Featured in this article:
Gary Stacey.
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MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs. Zhai J, Jeong D-H, de Paoli E, Park S, Rosen BD, Li Y, González AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC. Genes and Development; 25(23):2540-2553.
Date published:
December 1, 2011
Featured in this article:
Gary Stacey.
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Genetic variation of highly pathogenic H5N1 avian influenza viruses in vietnam shows both species-specific and spatiotemporal associations. Carrel M, Wan X-F, Nguyen T, Emch M. Avian Diseases; 55(4):659-666.
Date published:
December 1, 2011
Featured in this article:
XiuFeng “Henry” Wan.
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Indications that live poultry markets are a major source of human H5N1 influenza virus infection in China. Wan X-F, Dong L, Lan Y, Long L-P, Xu C, Zou S, Li Z, Wen L, Cai Z, Wang W, Li X, Yuan F, Sui H, Zhang Y, Dong J, Sun S, Gao Y, Wang M, Bai T, Yang L, Li D, Yang W, Yu H, Wang S, Feng Z, Wang Y, Guo Y, Webby RJ, Shu Y. Journal of Virology; 85(24):13432-13438.
Date published:
December 1, 2011
Featured in this article:
XiuFeng “Henry” Wan.
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Calcium insufficiency accelerates type 1 diabetes in vitamin D receptor-deficient nonobese diabetic (NOD) mice. Driver JP, Lamont DJ, Gysemans C, Mathieu C, Serreze DV. Endocrinology; 152(12):4620-4629.
Date published:
December 1, 2011
Featured in this article:
John Driver.
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Fast algorithm for clustering a large number of protein structural decoys. Zhang J, Xu D. Proceedings - 2011 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2011; 30-36.
Date published:
November 12, 2011
Featured in this article:
Dong Xu.
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PRIMEGENSw3: A web-based tool for high-throughput primer and probe design. Kushwaha G, Srivastava GP, Xu D. Proceedings - 2011 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2011; 345-351.
Date published:
November 12, 2011
Featured in this article:
Dong Xu.
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The main auxin biosynthesis pathway in Arabidopsis. Mashiguchi K, Tanaka K, Sakai T, Sugawara S, Kawaide H, Natsume M, Hanada A, Yaeno T, Shirasu K, Yao H, McSteen P, Zhao Y, Hayashi K-I, Kamiya Y, Kasahara H. Proceedings of the National Academy of Sciences of the United States of America; 108(45):18512-18517.
Date published:
November 8, 2011
Featured in this article:
Paula McSteen.
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A hybrid consensus and clustering method for protein structure selection. Wang Q, Shang Y, Xu D. Proceedings - International Conference on Tools with Artificial Intelligence, ICTAI; 1-8.
Date published:
November 7, 2011
Featured in this article:
Dong Xu.
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Selection for higher gene copy number after different types of plant gene duplications. Hudson CM, Puckett EE, Bekaert M, Pires JC, Conant GC. Genome Biology and Evolution; 3(1):1369-1380.
Date published:
November 4, 2011
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.
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Targeted enhancement of glutamate-to-γ-aminobutyrate conversion in Arabidopsis seeds affects carbon-nitrogen balance and storage reserves in a development-dependent manner. Fait A, Nesi AN, Angelovici R, Lehmann M, Pham PA, Song L, Haslam RP, Napier JA, Galili G, Fernie AR. Plant Physiology; 157(3)1026-1042.
Date published:
November 1, 2011
Featured in this article:
Ruthie Angelovici.
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Sequences in gibbon ape leukemia virus envelope that confer sensitivity to HIV-1 accessory protein Vpu. Janaka SK, Lucas TM, Johnson MC. Journal of Virology; 85(22):11945-11954.
Date published:
November 1, 2011
Featured in this article:
Marc Johnson.
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Activity-based metagenomic screening and biochemical characterization of bovine ruminal protozoan glycoside hydrolases. Findley SD, Mormile MR, Sommer-Hurley A, Zhang X-C, Tipton P, Arnett K, Porter JH, Kerley M, Stacey G. Applied and Environmental Microbiology; 77(22):8106-8113.
Date published:
November 1, 2011
Featured in this article:
Gary Stacey.
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Mapping the lipoylation site of Arabidopsis thaliana plastidial dihydrolipoamide S-acetyltransferase using mass spectrometry and site-directed mutagenesis. Casteel J, Miernyk JA, Thelen JJ. Plant Physiology and Biochemistry; 49(11):1355-1361.
Date published:
November 1, 2011
Featured in this article:
Jay Thelen.
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Genomically biased accumulation of seed storage proteins in allopolyploid cotton. Hu G, Houston NL, Pathak D, Schmidt L, Thelen JJ, Wendel JF. Genetics; 189(3):1103-1115.
Date published:
November 1, 2011
Featured in this article:
Jay Thelen.
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Digital gene expression for non-model organisms. Hong LZ, Li J, Schmidt-Küntzel A, Warren WC, Barsh GS. Genome Research; 21(11):1905-1915.
Date published:
November 1, 2011
Featured in this article:
Wes Warren.
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Loss of intra-islet CD20 expression may complicate efficacy of B-cell-directed type 1 diabetes therapies. Serreze DV, Chapman HD, Niens M, Dunn R, Kehry MR, Driver JP, Haller M, Wasserfall C, Atkinson MA. Diabetes; 60(11):2914-2921.
Date published:
November 1, 2011
Featured in this article:
John Driver.
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A high-resolution map of human evolutionary constraint using 29 mammals. Lindblad-Toh K, Garber M, Zuk O, Lin MF, Parker BJ, Washietl S, Kheradpour P, Ernst J, Jordan G, Mauceli E, Ward LD, Lowe CB, Holloway AK, Clamp M, Gnerre S, Alföldi J, Beal K, Chang J, Clawson H, Cuff J, Di Palma F, Fitzgerald S, Flicek P, Guttman M, Hubisz MJ, Jaffe DB, Jungreis I, Kent WJ, Kostka D, Lara M, Martins AL, Massingham T, Moltke I, Raney BJ, Rasmussen MD, Robinson J, Stark A, Viella AJ, Wen J, Xie X, Zody MC, Worley KC, Kovar CL, Muzny DM, Gibbs RA, Warren WC, Mardis ER, Weinstock GM, Wilson RK, Birney E, Margulies EH, Herrero J, Green ED, Haussler D, Siepel A, Goldman N, Pollard KS, Pedersen JS, Lander ES, Kellis M, Baldwin J, Bloom T, Chin CW, Heiman D, Nicol R, Nusbaum C, Young S, Wilkinson J, Cree A, Dihn HH, Fowler G, Jhangiani S, Joshi V, Lee S, Lewis LR, Nazareth LV, Okwuonu G, Santibanez J, Delehaunty K, Dooling D, Fronik C, Fulton L, Fulton B, Graves T, Minx P, Sodergren E. Nature; 478(7370):476-482.
Date published:
October 27, 2011
Featured in this article:
Wes Warren.
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Broad-spectrum aptamer inhibitors of HIV reverse transcriptase closely mimic natural substrates. Ditzler MA, Bose D, Shkriabai N, Marchand B, Sarafianos SG, Kvaratskhelia M, Burke DH. Nucleic Acids Research; 39(18):8237-8247.
Date published:
October 1, 2011
Featured in this article:
Donald Burke-Agüero.
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Delivery of therapeutic agents through intracerebroventricular (ICV) and intravenous (IV) injection in mice. Glascock JJ, Osman EY, Coady TH, Rose FF, Shababi M, Lorson CL. Journal of Visualized Experiments; 56:e2968.
Date published:
October 1, 2011
Featured in this article:
Christian Lorson.
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Long-distance transport, vacuolar sequestration, tolerance, and transcriptional responses induced by cadmium and arsenic. Mendoza-Cózatl DG, Jobe TO, Hauser F, Schroeder JI. Current Opinion in Plant Biology; 14(5):554-562.
Date published:
October 1, 2011
Featured in this article:
David Mendoza-Cózatl.
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De novo genetic variation associated with retrotransposon activation, genomic rearrangements and trait variation in a recombinant inbred line population of Brassica napus derived from interspecific hybridization with Brassica rapa. Zou J, Fu D, Gong H, Qian W, Xia W, Pires JC, Li R, Long Y, Mason AS, Yang T-J, Lim YP, Park BS, Meng J. Plant Journal; 68(2):212-224.
Date published:
October 1, 2011
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.
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The genome of the mesopolyploid crop species Brassica rapa. Wang X, Wang H, Wang J, Sun R, Wu J, Liu S, Bai Y, Mun J-H, Bancroft I, Cheng F, Huang S, Li X, Hua W, Wang J, Wang X, Freeling M, Pires JC, Paterson AH, Chalhoub B, Wang B, Hayward A, Sharpe AG, Park B-S, Weisshaar B, Liu B, Li B, Liu B, Tong C, Song C, Duran C, Peng C, Geng C, Koh C, Lin C, Edwards D, Mu D, Shen D, Soumpourou E, Li F, Fraser F, Conant G, Lassalle G, King GJ, Bonnema G, Tang H, Wang H, Belcram H, Zhou H, Hirakawa H, Abe H, Guo H, Wang H, Jin H, Parkin IAP, Batley J, Kim J-S, Just J, Li J, Xu J, Deng J, Kim JA, Li J, Yu J, Meng J, Wang J, Min J, Poulain J, Hatakeyama K, Wu K, Wang L, Fang L, Trick M, Links MG, Zhao M, Jin M, Ramchiary N, Drou N, Berkman PJ, Cai Q, Huang Q, Li R, Tabata S, Cheng S, Zhang S, Zhang S, Huang S, Sato S, Sun S, Kwon S-J, Choi S-R, Lee T-H, Fan W, Zhao X, Tan X, Xu X, Wang Y, Qiu Y, Yin Y, Li Y, Du Y, Liao Y, Lim Y, Narusaka Y, Wang Y, Wang Z, Li Z, Wang Z, Xiong Z, Zhang Z. Nature Genetics; 43(10):1035-1040.
Date published:
October 1, 2011
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.
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Targeted bisulfite sequencing by solution hybrid selection and massively parallel sequencing. Lee E-J, Pei L, Srivastava G, Joshi T, Kushwaha G, Choi J-H, Robertson KD, Wang X, Colbourne JK, Zhang L, Schroth GP, Xu D, Zhang K, Shi H. Nucleic Acids Research; 39(19).
Date published:
October 1, 2011
Featured in this article:
Trupti Joshi,
Dong Xu.
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A large-scale genetic screen in Arabidopsis to identify genes involved in pollen exine production. Dobritsa AA, Geanconteri A, Shrestha J, Carlson A, Kooyers N, Coerper D, Urbanczyk-Wochniak E, Bench BJ, Sumner LW, Swanson R, Preuss D. Plant Physiology; 157(2):947-970.
Date published:
October 1, 2011
Featured in this article:
Lloyd Sumner.
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A lysozyme with antifungal activity from Pithecellobium dulce seeds. Sawasdipuksa N, Lei Z, Sumner LW, Niyomploy P, Sangvanicha P. Food Technology and Biotechnology; 49(4):489-494.
Date published:
October 1, 2011
Featured in this article:
Lloyd Sumner.
Extent of antigenic cross-reactivity among highly pathogenic H5N1 influenza viruses. Ducatez MF, Cai Z, Peiris M, Guan Y, Ye Z, Wan X-F, Webby RJ. Journal of Clinical Microbiology; 49(10):3531-3536.
Date published:
October 1, 2011
Featured in this article:
XiuFeng “Henry” Wan.
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Generation of colonies of induced trophoblast cells during standard reprogramming of porcine fibroblasts to induced pluripotent stem cells. Ezashi T, Matsuyama H, Telugu BPV, Roberts RM. Biology of Reproduction; 85(4):779-787.
Date published:
October 1, 2011
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.
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A physical map of Brassica oleracea shows complexity of chromosomal changes following recursive paleopolyploidizations. Wang X, Torres MJ, Pierce G, Lemke C, Nelson LK, Yuksel B, Bowers JE, Marler B, Xiao Y, Lin L, Epps E, Sarazen H, Rogers C, Karunakaran S, Ingles J, Giattina E, Mun J-H, Seol Y-J, Park B-S, Amasino RM, Quiros CF, Osborn TC, Pires JC, Town C, Paterson AH. BMC Genomics; 12:470.
Date published:
September 28, 2011
Featured in this article:
.
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Pro-inflammatory cytokines and lipopolysaccharide induce changes in cell morphology, and upregulation of ERK1/2, iNOS and sPLA₂-IIA expression in astrocytes and microglia. Sheng W, Zong Y, Mohammad A, Ajit D, Cui J, Han D, Hamilton JL, Simonyi A, Sun AY, Gu Z, Hong J-S, Weisman GA, Sun GY. Journal of Neuroinflammation; 8:121.
Date published:
September 24, 2011
Featured in this article:
Gary Weisman.
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Bacterial outer membrane channel for divalent metal ion acquisition. Hohle TH, Franck WL, Stacey G, O'Brian MR. Proceedings of the National Academy of Sciences of the United States of America; 108(37):15390-15395.
Date published:
September 13, 2011
Featured in this article:
Gary Stacey.
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Spatial learning and memory impairment and increased locomotion in a transgenic amyloid precursor protein mouse model of Alzheimer’s disease. Walker JM, Fowler SW, Miller DK, Sun AY, Weisman GA, Wood WG, Sun GY, Simonyi A, Schachtman TR. Behavioural Brain Research; 222(1):169-175.
Date published:
September 12, 2011
Featured in this article:
Gary Weisman.
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The 14-3-3 isoforms chi and epsilon differentially bind client proteins from developing Arabidopsis seed. Swatek KN, Graham K, Agrawal GK, Thelen JJ. Journal of Proteome Research; 10(9):4076-4087.
Date published:
September 2, 2011
Featured in this article:
Jay Thelen.
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A friend in need is a friend: Indeed understanding stress-associated transcriptional networks of plant metabolism using cliques of coordinately expressed genes. Avin-Wittenberg T, Tzin V, Less H, Angelovici R, Galili G. Plant Signaling and Behavior; 6(9):1294-1296.
Date published:
September 1, 2011
Featured in this article:
Ruthie Angelovici.
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Conformational heterogeneity and the determinants of tertiary stabilization in the hammerhead ribozyme from Dolichopoda cave crickets. Roychowdhury-Saha M, Roychowdhury S, Burke DH. RNA Biology; 8(5).
Date published:
September 1, 2011
Featured in this article:
Donald Burke-Agüero.
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The spinal muscular atrophy mouse model, SMAΔ7, displays altered axonal transport without global neurofilament alterations. Dale JM, Shen H, Barry DM, Garcia VB, Rose FF Jr, Lorson CL, Garcia ML. Acta Neuropathologica; 122(3):331-341.
Date published:
September 1, 2011
Featured in this article:
Christian Lorson.
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Are all sex chromosomes created equal?. Bachtrog D, Kirkpatrick M, Mank JE, McDaniel SF, Pires JC, Rice WR, Valenzuela N. Trends in Genetics; 27(9):350-357.
Date published:
September 1, 2011
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.
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Exploring the complexity of tree thinking expertise in an undergraduate systematics course. Halverson KL, Pires CJ, Abell SK. Science Education; 95(5):794-823.
Date published:
September 1, 2011
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.
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A Dual-targeted soybean protein is involved in Bradyrhizobium japonicum infection of soybean root hair and cortical cells. Libault M, Govindarajulu M, Berg RH, Ong YT, Puricelli K, Taylor CG, Xu D, Stacey G. Molecular Plant-Microbe Interactions; 24(9):1051-1060.
Date published:
September 1, 2011
Featured in this article:
Dong Xu,
Gary Stacey.
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A sampling-based method for ranking protein structural models by integrating multiple scores and features. Shi X, Zhang J, He Z, Shang Y, Xu D. Current Protein and Peptide Science; 12(6):540-548.
Date published:
September 1, 2011
Featured in this article:
Dong Xu.
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Leukemia Inhibitory Factor (LIF)-dependent, pluripotent stem cells established from inner cell mass of porcine embryos. Telugu BPVL, Ezashi T, Sinha S, Alexenko AP, Spate L, Prather RS, Roberts RM. Journal of Biological Chemistry; 286(33):28948-28953.
Date published:
August 19, 2011
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.
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Facile transfer of [2Fe-2S] clusters from the diabetes drug target mitoNEET to an apo-acceptor protein. Zuris JA, Harir Y, Conlan AR, Shvartsman M, Michaeli D, Tamir S, Paddock ML, Onuchic JN, Mittler R, Cabantchik ZI, Jennings PA, Nechushtai R. Proceedings of the National Academy of Sciences of the United States of America; 108(32):13047-13052.
Date published:
August 9, 2011
Featured in this article:
Ron Mittler.
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Phosphoproteome analysis of Lotus japonicus roots reveals shared and distinct components of symbiosis and defense. Serna-Sanz A, Parniske M, Peck SC. Molecular Plant-Microbe Interactions; 24(8):932-937.
Date published:
August 1, 2011
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Scott Peck.
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Methyl jasmonate induces ATP biosynthesis deficiency and accumulation of proteins related to secondary metabolism in Catharanthus roseus (L.) G. Hairy Roots. Ruiz-May E, De-La-Peña C, Galaz-Ávalos RM, Lei Z, Watson BS, Sumner LW, Loyola-Vargas VM. Plant and Cell Physiology; 52(8):1401-1421.
Date published:
August 1, 2011
Featured in this article:
Lloyd Sumner.
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Plastid uridine salvage activity is required for photoassimilate allocation and partitioning in Arabidopsis. Chen M, Thelen JJ. Plant Cell; 23(8):2991-3006.
Date published:
August 1, 2011
Featured in this article:
Jay Thelen.
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Modularly assembled designer TAL effector nucleases for targeted gene knockout and gene replacement in eukaryotes. Li T, Huang S, Zhao X, Wright DA, Carpenter S, Spalding MH, Weeks DP, Yang B. Nucleic Acids Research; 39(14):6315-6325.
Date published:
August 1, 2011
Featured in this article:
Bing Yang.
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Sequencing the genome of the Burmese python (Python molurus bivittatus) as a model for studying extreme adaptations in snakes. Castoe TA, de Koning AJ, Hall KT, Yokoama KD, Gu W, Smith EN, Feschotte C, Uetz P, Ray DA, Dobry J, Bogden R, Mackessy SP, Bronikowski AM, Warren WC, Secor SM, Pollock DD. Genome Biology; 12(7):406.
Date published:
July 28, 2011
Featured in this article:
Wes Warren.
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Mass spectrometry strategies in metabolomics. Lei Z, Huhman DV, Sumner LW. Journal of Biological Chemistry; 286(29):25435-25442.
Date published:
July 22, 2011
Featured in this article:
Lloyd Sumner.
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Disruption of adult expression of sexually selected traits by developmental exposure to bisphenol A. Jašarevića E, Sieli PT, Twellman EE, Welsh TH Jr, Schachtman TR, Roberts RM, Geary DC, Rosenfeld CS. Proceedings of the National Academy of Sciences of the United States of America; 108(28):11715-11720.
Date published:
July 12, 2011
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New mechanism of oral immunity to mucosal candidiasis in hyper-IgE syndrome. Conti HR, Baker O, Freeman AF, Jang WS, Holland SM, Li RA, Edgerton M, Gaffen SL. Mucosal Immunology; 4(4):448-455.
Date published:
July 1, 2011
Featured in this article:
Olga Baker.
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SMN in spinal muscular atrophy and snRNP biogenesis. Coady TH, Lorson CL. Wiley Interdisciplinary Reviews: RNA; 2(4):546-564.
Date published:
July 1, 2011
Featured in this article:
Christian Lorson.
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Arabidopsis MAP Kinase Phosphatase 1 (AtMKP1) negatively regulates MPK6-mediated PAMP responses and resistance against bacteria. Anderson JC, Bartels S, Besteiro MAG, Shahollari B, Ulm R, Peck SC. Plant Journal; 67(2):258-268.
Date published:
July 1, 2011
Featured in this article:
Scott Peck.
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Phenology-based assessment of perennial energy crops in North American tallgrass prairie. Wang C, Fritschi FB, Stacey G, Yang Z. Annals of the Association of American Geographers; 101(4):742-751.
Date published:
July 1, 2011
Featured in this article:
Gary Stacey.
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Fluorescence in situ hybridization-based karyotyping of soybean translocation lines. Findley SD, Pappas AL, Cui Y, Birchler JA, Palmer RJ, Stacey G. G3: Genes, Genomes, Genetics; 1(2):117-129.
Date published:
July 1, 2011
Featured in this article:
Gary Stacey.
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A legume specific protein database (LegProt) improves the number of identified peptides, confidence scores and overall protein identification success rates for legume proteomics. Lei Z, Dai X, Watson BS, Zhao PX, Sumner LW. Phytochemistry; 72(10):1020-1027.
Date published:
July 1, 2011
Featured in this article:
Lloyd Sumner.
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Proteome analysis of leaves of the desiccation-tolerant grass, Sporobolus stapfianus, in response to dehydration. Oliver MJ, Jain R, Balbuena TS, Agrawal G, Gasulla F, Thelen JJ. Phytochemistry; 72(10):1273-1284.
Date published:
July 1, 2011
Featured in this article:
Jay Thelen.
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Identification of an H6N6 swine influenza virus in southern China. Zhang G, Kong W, Qi W, Long L-P, Cao Z, Huang L, Qi H, Cao N, Wang W, Zhao F, Ning Z, Liao M, Wan X-F. Infection, Genetics and Evolution; 11(5):1174-1177.
Date published:
July 1, 2011
Featured in this article:
XiuFeng “Henry” Wan.
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Comparative genomics based on massive paralle transcriptome sequencing reveals patterns of substitution and selection across 10 bird species (Molecular Ecology (2010) 19:SUPPL.1 (266-276)). Künstner A, Wolf JBW, Backström N, Whitney O, Balakrishnan CN, Day L, Edwards SV, Janes DE, Schlinger BA, Wilson RK, Jarvis ED, Warren WC, Ellegren H. Molecular Ecology; 20(13):2871.
Date published:
July 1, 2011
Featured in this article:
Wes Warren.
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Clathrin facilitates the morphogenesis of retrovirus particles. Zhang F, Zang T, Wilson SJ, Johnson MC, Bieniasz PD. PLoS Pathogens; 7(6):e1002119.
Date published:
June 1, 2011
Featured in this article:
Marc Johnson.
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ROS signaling: The new wave?. Mittler R, Vanderauwera S, Suzuki N, Miller G, Tognetti VB, Vandepoele K, Gollery M, Shulaev V, Van Breusegem F. Trends in Plant Science; 16(6):300-309.
Date published:
June 1, 2011
Featured in this article:
Ron Mittler.
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Identification of the MBF1 heat-response regulon of Arabidopsis thaliana. Suzuki N, Sejima H, Tam R, Schlauch K, Mittler R. Plant Journal; 66(5):844-851.
Date published:
June 1, 2011
Featured in this article:
Ron Mittler.
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STENOFOLIA regulates blade outgrowth and leaf vascular patterning in medicago truncatula and nicotiana sylvestris. Tadege M, Lin H, Bedair M, Berbel A, Wen J, Rojas CM, Niu L, Tang Y, Sumner L, Ratet P, McHale NA, Madueño F, Mysore KS. Plant Cell; 23(6):2125-2142.
Date published:
June 1, 2011
Featured in this article:
Lloyd Sumner.
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Dynamic changes in leptin distribution in the progression from ovum to blastocyst of the pre-implantation mouse embryo. Schulz LC, Roberts RM. Reproduction; 141(6):767-777.
Date published:
June 1, 2011
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Differentiation of induced pluripotent stem cells of swine into rod photoreceptors and their integration into the retina. Zhou L, Wang W, Liu Y, De Castro JF, Ezashi T, Telugu BPVL, Roberts RM, Kaplan HJ, Dean DC. Stem Cells; 29(6):972-980.
Date published:
June 1, 2011
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The development and characterization of a 60K SNP chip for chicken. Groenen MAM, Megens H-J, Zare Y, Warren WC, Hillier LW, Crooijmans RPMA, Vereijken A, Okimoto R, Muir WM, Cheng HH. BMC Genomics; 12:274.
Date published:
May 31, 2011
Featured in this article:
Wes Warren.
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A physical map for the Amborella trichopoda genome sheds light on the evolution of angiosperm genome structure. Zuccolo A, Bowers JE, Estill JC, Xiong Z, Luo M, Sebastian A, Goicoechea JL, Collura K, Yu Y, Jiao Y, Duarte J, Tang H, Ayyampalayam S, Rounsley S, Kudrna D, Paterson AH, Pires JC, Chanderbali A, Soltis DE, Chamala S, Barbazuk B, Soltis PS, Albert VA, Ma H, Mandoli D, Banks J, Carlson JE, Tomkins J, dePamphilis CW, Wing RA, Leebens-Mack J. Genome Biology; 12(5):R48.
Date published:
May 27, 2011
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.
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Homoeologous shuffling and chromosome compensation maintain genome balance in resynthesized allopolyploid Brassica napus. Xiong Z, Gaeta RT, Pires JC. Proceedings of the National Academy of Sciences of the United States of America; 108(19):7908-7913.
Date published:
May 10, 2011
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.
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Simplified enrichment of plasma membrane proteins for proteomic analyses in Arabidopsis thaliana. Zhang ZJ, Peck SC. Proteomics; 11(9):1780-1788.
Date published:
May 9, 2011
Featured in this article:
Scott Peck.
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Comparative proteomics of seed maturation in oilseeds reveals differences in intermediary metabolism. Hajduch M, Matusova R, Houston NL, Thelen JJ. Proteomics; 11(9):1619-1629.
Date published:
May 9, 2011
Featured in this article:
Jay Thelen.
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Proteomic comparison of plastids from developing embryos and leaves of Brassica napus. Demartini DR, Jain R, Agrawal G, Thelen JJ. Journal of Proteome Research; 10(5):2226-2237.
Date published:
May 6, 2011
Featured in this article:
Jay Thelen.
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Proteome analysis of cold acclimation in sunflower. Balbuena TS, Salas JJ, Martínez-Force E, Garcés R, Thelen JJ. Journal of Proteome Research; 10(5):2330-2346.
Date published:
May 6, 2011
Featured in this article:
Jay Thelen.
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The COPI vesicle complex binds and moves with survival motor neuron within axons. Peter CJ, Evans M, Thayanithy V, Taniguchi-Ishigaki N, Bach I, Kolpak A, Bassell GJ, Rossoll W, Lorson CL, Bao Z-Z, Androphy EJ. Human Molecular Genetics; 20(9):1701-1711.
Date published:
May 1, 2011
Featured in this article:
Christian Lorson.
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Two-phase resolution of polyploidy in the Arabidopsis metabolic network gives rise to relative and absolute dosage constraints. Bekaert M, Edger PP, Chris Pires J, Conant GC. Plant Cell; 23(5):1719-1728.
Date published:
May 1, 2011
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.
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Phenotypic and genomic analyses of a fast neutron mutant population resource in soybean. Bolon Y-T, Haun WJ, Xu WW, Grant D, Stacey MG, Nelson RT, Gerhardt DJ, Jeddeloh JA, Stacey G, Muehlbauer GJ, Orf JH, Naeve SL, Stupar RM, Vance CP. Plant Physiology; 156(1):240-253.
Date published:
May 1, 2011
Featured in this article:
Minviluz (Bing) Stacey,
Gary Stacey.
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Homolog-specific PCR primer design for profiling splice variants. Srivastava GP, Hanumappa M, Kushwaha G, Nguyen HT, Xu D. Nucleic Acids Research; 39(10):e69.
Date published:
May 1, 2011
Featured in this article:
Dong Xu.
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Coordinated gene networks regulating Arabidopsis plant metabolism in response to various stresses and nutritional cues. Less H, Angelovici R, Tzin V, Galili G. Plant Cell; 23(4):1264-1271.
Date published:
April 1, 2011
Featured in this article:
Ruthie Angelovici.
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Muscle satellite cells from GRMD dystrophic dogs are not phenotypically distinguishable from wild type satellite cells in ex vivo culture. Berg Z, Beffa LR, Cook DP, Cornelison DDW. Neuromuscular Disorders; 21(4):282-290.
Date published:
April 1, 2011
Featured in this article:
D Cornelison.
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Epigenetic regulation of flowering time in polyploids. Mayfield D, Chen ZJ, Pires JC. Current Opinion in Plant Biology; 14(2):174-178.
Date published:
April 1, 2011
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.
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Enzymatic activity of the soybean ecto-apyrase GS52 is essential for stimulation of nodulation. Tanaka K, Nguyen CT, Libault M, Cheng J, Stacey G. Plant Physiology; 155(4):1988-1998.
Date published:
April 1, 2011
Featured in this article:
Gary Stacey.
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MATE2 mediates vacuolar sequestration of flavonoid glycosides and glycoside malonates in Medicago truncatula. Zhao J, Huhman D, Shadle G, He X-Z, Sumner LW, Tang Y, Dixon RA. Plant Cell; 23(4):1536-1555.
Date published:
April 1, 2011
Featured in this article:
Lloyd Sumner.
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Differential proteome analysis of mature and germinated embryos of Araucaria angustifolia. Balbuena TS, Jo L, Pieruzzi FP, Dias LLC, Silveira V, Santa-Catarina C, Junqueira M, Thelen JJ, Shevchenko A, Floh EIS. Phytochemistry; 72(4-5):302-311.
Date published:
April 1, 2011
Featured in this article:
Jay Thelen.
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Unmasking genes in a type 1 diabetes-resistant mouse strain that enhances pathogenic CD8 T-cell responses. Driver JP, Chen Y-G, Zhang W, Asrat S, Serreze DV. Diabetes; 60(4):1354-1359.
Date published:
April 1, 2011
Featured in this article:
John Driver.
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Targeting of a T cell agonist peptide to lysosomes by DNA vaccination induces tolerance in the nonobese diabetic mouse. Rivas EI, Driver JP, Garabatos N, Presa M, Mora C, Rodriguez F, Serreze DV, Stratmann T. Journal of Immunology; 186(7):4078-4087.
Date published:
April 1, 2011
Featured in this article:
John Driver.
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Testing the role of P2X₇ receptors in the development of type 1 diabetes in nonobese diabetic mice. Chen Y-G, Scheuplein F, Driver JP, Hewes AA, Reifsnyder PC, Leiter EH, Serreze DV. Journal of Immunology; 186(7):4278-4284.
Date published:
April 1, 2011
Featured in this article:
John Driver.
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A vertebrate case study of the quality of assemblies derived from next-generation sequences. Ye L, Hillier LW, Minx P, Thane N, Locke DP, Martin JC, Chen L, Mitreva M, Miller JR, Haub KV, Dooling DJ, Mardis ER, Wilson RK, Weinstock GM, Warren WC. Genome Biology; 12(3):R31.
Date published:
March 31, 2011
Featured in this article:
Wes Warren.
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Identification of salt tolerance genes in rice from microarray data using SVM-RFE. Wang J, Zhang F, Wang Y, Fu Y, Xu D, Liang Y. 3rd International Conference on Bioinformatics and Computational Biology 2011, BICoB 2011; 30-35.
Date published:
March 23, 2011
Featured in this article:
Dong Xu.
Spatially Resolved Plant Metabolomics. Sumner LW, Yang DS, Bench BJ, Watson BS, Li C, Daniel Jones A. Annual Plant Reviews Volume 43: Biology of Plant Metabolomics; 43:343-366.
Date published:
March 17, 2011
Featured in this article:
Lloyd Sumner.
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Mechanisms for env glycoprotein acquisition by retroviruses. Johnson MC. AIDS Research and Human Retroviruses; 27(3):239-247.
Date published:
March 1, 2011
Featured in this article:
Marc Johnson.
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Activation of the heat shock transcription factor Hsf1 is essential for the full virulence of the fungal pathogen Candida albicans. Nicholls S, MacCallum DM, Kaffarnik FAR, Selway L, Peck SC, Brown AJP. Fungal Genetics and Biology; 48(3):297-305.
Date published:
March 1, 2011
Featured in this article:
Scott Peck.
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Advances in the understanding of mammalian copper transporters. Wang Y, Hodgkinson V, Zhu S, Weisman GA, Petris MJ. Advances in Nutrition; 2(2):129-137.
Date published:
March 1, 2011
Featured in this article:
Gary Weisman,
Michael Petris.
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Analysis of B-genome chromosome introgression in interspecific hybrids of Brassica napus x B. carinata. Navabi ZK, Stead KE, Pires JC, Xiong Z, Sharpe AG, Parkin IAP, Rahman MH, Good AG. Genetics; 187(3):659-673.
Date published:
March 1, 2011
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.
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Introduction to special issue on biodiversity. Raven PH, Chase JM, Chris Pires J. American Journal of Botany; 98(3):333-335.
Date published:
March 1, 2011
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.
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Biodiversity assessment: State-of-the-art techniques in phylogenomics and species identification. Roxanne Steele P, Chris Pires J. American Journal of Botany; 98(3):415-425.
Date published:
March 1, 2011
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.
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The folylpolyglutamate synthetase plastidial isoform is required for postembryonic root development in Arabidopsis. Srivastava AC, Ramos-Parra PA, Bedair M, Robledo-Hernández AL, Tang Y, Sumner LW, Díaz de la Garza RI, Blancaflor EB. Plant Physiology; 155(3):1237-1251.
Date published:
March 1, 2011
Featured in this article:
Lloyd Sumner.
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The draft genome of the parasitic nematode Trichinella spiralis. Mitreva M, Jasmer DP, Zarlenga DS, Wang Z, Abubucker S, Martin J, Taylor CM, Yin Y, Fulton L, Minx P, Yang S-P, Warren WC, Fulton RS, Bhonagiri V, Zhang X, Hallsworth-Pepin K, Clifton SW, McCarter JP, Appleton J, Mardis ER, Wilson RK. Nature Genetics; 43(3):228-235.
Date published:
March 1, 2011
Featured in this article:
Wes Warren.
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Trophoblast stem cells. Roberts RM, Fisher SJ. Biology of Reproduction; 84(3):412-421.
Date published:
March 1, 2011
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.
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Transcript profiling of individual twin blastomeres derived by splitting two-cell stage murine embryos. Roberts RM, Katayama M, Magnuson SR, Falduto MT, Torres KEO. Biology of Reproduction; 84(3):487-494.
Date published:
March 1, 2011
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.
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Quantitation of soybean allergens using tandem mass spectrometry. Houston NL, Lee D-G, Stevenson SE, Ladics GS, Bannon GA, McClain S, Privalle L, Stagg N, Herouet-Guieheney C, MacIntosh SC, Thelen JJ. Journal of Proteome Research; 10(2):763-773.
Date published:
February 4, 2011
Featured in this article:
Jay Thelen.
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Muscle satellite cell proliferation and association: new insights from myofiber time-lapse imaging. Siegel AL, Kuhlmann PK, Cornelison DDW. Skeletal Muscle; 1(1):7.
Date published:
February 2, 2011
Featured in this article:
D Cornelison.
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Quantifying alternatively spliced mRNA via capillary electrophoresis. Zhang XC, Gassmann W. Methods in molecular biology (Clifton, N.J.); 712:69-77.
Date published:
February 1, 2011
Featured in this article:
Walter Gassmann.
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Combination of SMN trans-splicing and a neurotrophic factor increases the life span and body mass in a severe model of spinal muscular atrophy. Shababi M, Glascock J, Lorson CL. Human Gene Therapy; 22(2):135-144.
Date published:
February 1, 2011
Featured in this article:
Christian Lorson.
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vanishing tassel2 Encodes a Grass-Specific tryptophan aminotransferase required for vegetative and reproductive development in maize. Phillips KA, Skirpan AL, Liu X, Christensen A, Slewinski TL, Hudson C, Barazesh S, Cohen JD, Malcomber S, McSteen P. Plant Cell; 23(2):550-566.
Date published:
February 1, 2011
Featured in this article:
Paula McSteen.
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The genome of woodland strawberry (Fragaria vesca). Shulaev V, Sargent DJ, Crowhurst RN, Mockler TC, Folkerts O, Delcher AL, Jaiswal P, Mockaitis K, Liston A, Mane SP, Burns P, Davis TM, Slovin JP, Bassil N, Hellens RP, Evans C, Harkins T, Kodira C, Desany B, Crasta OR, Jensen RV, Allan AC, Michael TP, Setubal JC, Celton J-M, Rees DJG, Williams KP, Holt SH, Rojas JJR, Chatterjee M, Liu B, Silva H, Meisel L, Adato A, Filichkin SA, Troggio M, Viola R, Ashman T-L, Wang H, Dharmawardhana P, Elser J, Raja R, Priest HD, Bryant DW, Fox SE, Givan SA, Wilhelm LJ, Naithani S, Christoffels A, Salama DY, Carter J, Girona EL, Zdepski A, Wang W, Kerstetter RA, Schwab W, Korban SS, Davik J, Monfort A, Denoyes-Rothan B, Arus P, Mittler R, Flinn B, Aharoni A, Bennetzen JL, Salzberg SL, Dickerman AW, Velasco R, Borodovsky M, Veilleux RE, Folta KM. Nature Genetics; 43(2):109-116.
Date published:
February 1, 2011
Featured in this article:
Ron Mittler.
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The genome sequence of the leaf-cutter ant Atta cephalotes reveals insights into its obligate symbiotic lifestyle. Suen G, Teiling C, Li L, Holt C, Abouheif E, Bornberg-Bauer E, Bouffard P, Caldera EJ, Cash E, Cavanaugh A, Denas O, Elhaik E, Favé M-J, Gadau J, Gibson JD, Graur D, Grubbs KJ, Hagen DE, Harkins TT, Helmkampf M, Hu H, Johnson BR, Kim J, Marsh SE, Moeller JA, Muñoz-TorresMó MC, Murphy MC, Naughton MC, Nigam S, Overson R, Rajakumar R, Reese JT, Scott JJ, Smith CR, Tao S, Tsutsui ND, Viljakainen L, Wissler L, Yandell MD, Zimmer F, Taylor J, Slater SC, Clifton SW, Warren WC, Elsik CG, Smith CD, Weinstock GM, Gerardo NM, Currie CR. PLoS Genetics; 7(2):e1002007.
Date published:
February 1, 2011
Featured in this article:
Wes Warren.
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Comparative and demographic analysis of orang-utan genomes. Locke DP, Hillier LW, Warren WC, Worley KC, Nazareth LV, Muzny DM, Yang S-P, Wang Z, Chinwalla AT, Minx P, Mitreva M, Cook L, Delehaunty KD, Fronick C, Schmidt H, Fulton LA, Fulton RS, Nelson JO, Magrini V, Pohl C, Graves TA, Markovic C, Cree A, Dinh HH, Hume J, Kovar CL, Fowler GR, Lunter G, Meader S, Heger A, Ponting CP, Marques-Bonet t, Alkan C, Chen L, Cheng Z, Kidd JM, Eichler EE, White S, Searle S, Vilella AJ, Chen Y, Flicek P, Ma J, Raney B, Suh B, Burhans R, Herrero J, Haussler D, Faria R, Fernando O, Darré F, Farré D, Gazave E, Oliva M, Navarro A, Roberto R, Capozzi O, Archidiacono N, Valle GD, Purgato S, Rocchi M, Konkel MK, Walker JA, Ullmer B, Batzer MA, Smit AFA, Hubley R, Casola C, Schrider DR, Hahn MW, Quesada V, Puente XS, Ordõez GR, Ĺpez-Otín C, Vinar T, Brejova B, Ratan A, Harris RS, Miller W, Kosiol C, Lawson HA, Taliwal V, Martins AL, Siepel A, Roychoudhury A, Ma X, Degenhardt J, Bustamante CD, Gutenkunst RN, Mailund T, Dutheil JY, Hobolth A, Schierup MH, Ryder OA, Yoshinaga Y, De Jong PJ, Weinstock GM, Roger J, Mardis ER, Gibbs RA, Wilson RK. Nature; 469(7331):529-533.
Date published:
January 27, 2011
Featured in this article:
Wes Warren.
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Extranuclear protection of chromosomal DNA from oxidative stress. Vanderauwera S, Suzuki N, Miller G, Van De Cotte B, Morsa S, Ravanat J-L, Hegie A, Triantaphylidès C, Shulaev V, Van Montagu MCE, Van Breusegem F, Mittler R. Proceedings of the National Academy of Sciences of the United States of America; 108(4):1711-1716.
Date published:
January 25, 2011
Featured in this article:
Ron Mittler.
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A seed high-lysine trait is negatively associated with the TCA cycle and slows down Arabidopsis seed germination. Angelovici R, Fait A, Fernie AR, Galili G. New Phytologist; 189(1):148-159.
Date published:
January 1, 2011
Featured in this article:
Ruthie Angelovici.
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Regressive progression, progressive regression or neither? Phylogeny and evolution of the Percopsiformes (Teleostei, Paracanthopterygii). Dillman CB, Bergstrom DE, Noltie DB, Holtsford TP, Mayden RL. Zoologica Scripta; 40(1):45-60.
Date published:
January 1, 2011
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Dean Bergstrom.
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Contrasting patterns of support among plastid genes and genomes for major clades of the monocotyledons. Davis JI, McNeal JR, Barrett CF, Chase MW, Cohen JI, Duvall MR, Givnish TJ, Graham SW, Petersen G, Pires JC, Seberg O, Stevenson DW, Leebens-Mack J. Early Events in Monocot Evolution; 315-349.
Date published:
January 1, 2011
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.
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Karyotype and identification of all homoeologous chromosomes of allopolyploid Brassica napus and its diploid progenitors. Xiong Z, Chris Pires J. Genetics; 187(10:37-49.
Date published:
January 1, 2011
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.
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Prediction of Drought-Resistant genes in Arabidopsis thaliana using SVM-RFE. Liang Y, Zhang F, Wang J, Joshi T, Wang Y, Xu D. PLoS ONE; 6(7):e21750.
Date published:
January 1, 2011
Featured in this article:
Trupti Joshi,
Dong Xu.
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K70Q adds high-level tenofovir resistance to “Q151M complex” HIV reverse transcriptase through the enhanced discrimination mechanism. Hachiya A, Kodama EN, Schuckmann MM, Kirby KA, Michailidis E, Sakagami Y, Oka S, Singh K, Sarafianos SG. PLoS ONE; 6(1):e16242.
Date published:
January 1, 2011
Featured in this article:
Kamlendra Singh.
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The sugar ring conformation of 4′-ethynyl-2-fluoro-2′-deoxyadenosine and its recognition by the polymerase active site of HIV reverse transcriptase. Kirby KA, Singh K, Michailidis E, Marchand B, Kodama EN, Ashida N, Mitsuya H, Parniak MA, Sarafianos SG. Molecular and Cellular Biology; 57(1):40-46.
Date published:
January 1, 2011
Featured in this article:
Kamlendra Singh.
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Emerging trends in biochemistry issue. Sharma B, Watal G, Singh K. Molecular and Cellular Biology; 57(1):1-2.
Date published:
January 1, 2011
Featured in this article:
Kamlendra Singh.
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Enzymatic role for soybean ecto-apyrase in nodulation. Tanaka K, Nguyen THN, Stacey G. Plant Signaling and Behavior; 6(7):1034-1036.
Date published:
January 1, 2011
Featured in this article:
Gary Stacey.
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A protein domain Co-occurrence network approach for predicting protein function and inferring species phylogeny. Wang Z, Zhang X-C, Le MH, Xu D, Stacey G, Cheng J. PLoS ONE; 6(3):e17906.
Date published:
January 1, 2011
Featured in this article:
Dong Xu,
Gary Stacey.
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Global and targeted proteomics in developing jack bean (Canavalia ensiformis) seedlings: An investigation of urease isoforms mobilization in early stages of development. Demartini DR, Carlini CR, Thelen JJ. Plant Molecular Biology; 75(1):53-65.
Date published:
January 1, 2011
Featured in this article:
Jay Thelen.
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Proteome databases and other online resources for chloroplast research in Arabidopsis. Demartini DR, Carlini CR, Thelen JJ. Methods in Molecular Biology; 775:93-115.
Date published:
January 1, 2011
Featured in this article:
Jay Thelen.
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SO2426 is a positive regulator of siderophore expression in Shewanella oneidensis MR-1. Henne KL, Wan X-F, Wei W, Thompson DK. BMC Microbiology; 11:125.
Date published:
January 1, 2011
Featured in this article:
XiuFeng “Henry” Wan.
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Transcriptome analysis of female and male Xiphophorus maculatus Jp 163 A. Zhang Z, Wang Y, Wang S, Liu J, Warren W, Mitreva M, Walter RB. PLoS ONE; 6(4):e18379.
Date published:
January 1, 2011
Featured in this article:
Wes Warren.
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A proposal to sequence the genome of a garter snake (Thamnophis sirtalis). Castoe TA, Bronikowski AM, Brodie ED, Edwards SV, Pfrender ME, Shapiro MD, Pollock DD, Warren WC. Standards in Genomic Sciences; 4(2):257-270.
Date published:
January 1, 2011
Featured in this article:
Wes Warren.
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Prolonged exposure of cortical neurons to oligomeric amyloid-β impairs NMDA receptor function via NADPH oxidasemediated ROS production: Protective effect of green tea (-)-epigallocatechin-3-gallate. He Y, Cui J, Lee JC, Ding S, Chalimoniuk M, Simonyi A, Sun AY, Gu Z, Weisman GA, Gibson Wood W, Sun GY. ASN Neuro; 3(1):13-24.
Date published:
January 1, 2011
Featured in this article:
Gary Weisman.
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Improving a consensus approach for protein structure selection by removing redundancy. Wang Q, Shang Y, Xu D. IEEE/ACM Transactions on Computational Biology and Bioinformatics; 8(6):1708-1715.
Date published:
January 1, 2011
Featured in this article:
Dong Xu.
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A multilayer evaluation approach for protein structure prediction and model quality assessment. Zhang J, Wang Q, Vantasin K, Zhang J, He Z, Kosztin I, Shang Y, Xu D. Proteins: Structure, Function and Bioinformatics; 79(SUPPL. 10):172-184.
Date published:
January 1, 2011
Featured in this article:
Dong Xu.
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TAL nucleases (TALNs): Hybrid proteins composed of TAL effectors and FokI DNA-cleavage domain. Li T, Huang S, Jiang WZ, Wright D, Spalding MH, Weeks DP, Yang B. Nucleic Acids Research; 39(1):359-372.
Date published:
January 1, 2011
Featured in this article:
Bing Yang.
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Mouse models for the study of autoimmune type 1 diabetes: A NOD to similarities and differences to human disease. Driver JP, Serreze DV, Chen Y-G. Seminars in Immunopathology; 33(1):67-87.
Date published:
January 1, 2011
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John Driver.
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Porcine induced pluripotent stem cells analogous to naïve and primed embryonic stem cells of the mouse. Telugu BPVL, Ezashi T, Roberts RM. International Journal of Developmental Biology; 54(11-12):1703-1711.
Date published:
January 1, 2011
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2010
Assembling the tree of the monocotyledons: Plastome sequence phylogeny and evolution of Poales. Givnish TJ, Ames M, McNeal JR, McKain MR, Steele PR, Depamphilis CW, Graham SW, Pires JC, Stevenson DW, Zomlefer WB, Briggs BG, Duvall MR, Moore MJ, Heaney JM, Soltis DE, Soltis PS, Thiele K, Leebens-Mack JH. Annals of the Missouri Botanical Garden; 97(4):584-616.
Date published:
December 27, 2010
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.
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Tonoplast-localized Abc2 transporter mediates phytochelatin accumulation in vacuoles and confers cadmium tolerance. Mendoza-Cózatl DG, Zhai Z, Jobe TO, Akmakjian GZ, Song W-Y, Limbo O, Russell MR, Kozlovskyy VI, Martinoia E, Vatamaniuk OK, Russell P, Schroeder JI. Journal of Biological Chemistry; 285(52):40416-40426.
Date published:
December 24, 2010
Featured in this article:
David Mendoza-Cózatl.
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The Musite open-source framework for phosphorylation-site prediction. Gao J, Xu D. BMC Bioinformatics; 11(SUPPL. 12):S9.
Date published:
December 21, 2010
Featured in this article:
Dong Xu.
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SoyMetDB: The Soybean Metabolome Database. Joshi T, Yao Q, Franklin LD, Brechenmacher L, Valliyodan B, Stacey G, Nguyen H, Xu D. Proceedings - 2010 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2010; 203-208.
Date published:
December 18, 2010
Featured in this article:
Trupti Joshi,
Gary Stacey,
Dong Xu.
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Detection and application of CagA sequence markers for assessing risk factor of gastric cancer caused by Helicobacter pylori. Zhang C, Xu S, Xu D. Proceedings - 2010 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2010; 485-488.
Date published:
December 18, 2010
Featured in this article:
Dong Xu.
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Avian-origin H3N2 canine influenza A viruses in Southern China. Li S, Shi Z, Jiao P, Zhang G, Zhong Z, Tian W, Long L-P, Cai Z, Zhu X, Liao M, Wan X-F. Infection, Genetics and Evolution; 10(8):1286-1288.
Date published:
December 10, 2010
Featured in this article:
XiuFeng “Henry” Wan.
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Arsenic tolerance in Arabidopsis is mediated by two ABCC-type phytochelatin transporters. Song W-Y, Park J, Mendoza-Cózatl DG, Suter-Grotemeyer M, Shima D, Hörtensteiner S, Geisler M, Weder B, Rea PA, Rentsch D, Schroeder JI, Lee Y, Martinoia E. Proceedings of the National Academy of Sciences of the United States of America; 107(49):21187-21192.
Date published:
December 7, 2010
Featured in this article:
David Mendoza-Cózatl.
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The N348I mutation at the connection subdomain of HIV-1 reverse transcriptase decreases binding to nevirapine. Schuckmann MM, Marchand B, Hachiya A, Kodama EN, Kirby KA, Singh K, Sarafianos SG. Journal of Biological Chemistry; 285(49):38700-38709.
Date published:
December 3, 2010
Featured in this article:
Kamlendra Singh.
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Comparative proteomics of yeast-elicited medicago truncatula cell suspensions reveals induction of isoflavonoid biosynthesis and cell wall modifications. Lei Z, Chen F, Watson BS, Nagaraj S, Elmer AM, Dixon RA, Sumner LW. Journal of Proteome Research; 9(12):6220-6231.
Date published:
December 3, 2010
Featured in this article:
Lloyd Sumner.
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Assembly and activation of a kinase ribozyme. Burke DH, Rhee SS. RNA; 16(12):2349-2359.
Date published:
December 1, 2010
Featured in this article:
Donald Burke-Agüero.
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Musite, a tool for global prediction of general and kinase-specific phosphorylation sites. Gao J, Thelen JJ, Dunker AK, Xu D. Molecular and Cellular Proteomics; 9(12):2586-2600.
Date published:
December 1, 2010
Featured in this article:
Jay Thelen,
Dong Xu.
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Evolution of seed allergen quantification – From antibodies to mass spectrometry. Stevenson SE, Houston NL, Thelen JJ. Regulatory Toxicology and Pharmacology; 58(3):S36-S41.
Date published:
December 1, 2010
Featured in this article:
Jay Thelen.
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Effector prediction in host-pathogen interaction based on a Markov model of a ubiquitous EPIYA motif. Xu S, Zhang C, Miao Y, Gao J, Xu D. BMC Genomics; 11(SUPPL. 3):S1.
Date published:
December 1, 2010
Featured in this article:
Dong Xu.
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Mapping of quantitative trait loci/locus conferring resistance to foxtail mosaic virus in maize using the intermated B73-×-Mo17 population. Ji Q, Yang B, Lee M, Chen Y, Lübberstedt T. Plant Breeding; 129(6):721-723.
Date published:
December 1, 2010
Featured in this article:
Bing Yang.
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2K09 and thereafter: The coming era of integrative bioinformatics, systems biology and intelligent computing for functional genomics and personalized medicine research. Yang JY, Niemierko A, Bajcsy R, Xu D, Athey BD, Zhang A, Ersoy OK, Li G-Z, Borodovsky M, Zhang JC, Arabnia HR, Deng Y, Dunker AK, Liu Y, Ghafoor A. BMC Genomics; 11(SUPPL. 3):I1.
Date published:
November 29, 2010
Featured in this article:
Dong Xu.
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Whole genome co-expression analysis of soybean cytochrome P450 genes identifies nodulation-specific P450 monooxygenases. Guttikonda SK, Trupti J, Bisht NC, Chen H, An Y-QC, Pandey S, Xu D, Yu O. BMC Plant Biology; 10:243.
Date published:
November 9, 2010
Featured in this article:
Trupti Joshi,
Dong Xu.
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The arabidopsis resistance-like gene SNC1 is activated by mutations in SRFR1 and contributes to resistance to the bacterial effector AvrRps4. Kim SH, Gao F, Bhattacharjee S, Adiasor JA, Nam JC, Gassmann W. PLoS Pathogens; 6(11):e1001172.
Date published:
November 1, 2010
Featured in this article:
Walter Gassmann.
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Root hair systems biology. Libault M, Brechenmacher L, Cheng J, Xu D, Stacey G. Trends in Plant Science; 15(11):641-650.
Date published:
November 1, 2010
Featured in this article:
Dong Xu,
Gary Stacey.
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Rice xa13 recessive resistance to bacterial blight is defeated by induction of the disease susceptibility gene Os-11N3. Antony G, Zhou J, Huang S, Li T, Liu B, White F, Yang B. Plant Cell; 22(11):3864-3876.
Date published:
November 1, 2010
Featured in this article:
Bing Yang.
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Principal transcriptional regulation and genome-wide system interactions of the Asp-family and aromatic amino acid networks of amino acid metabolism in plants. Less, H., Angelovici, R., Tzin, V., Galili, G. Amino Acids; 39(4):1023-1028.
Date published:
October 1, 2010
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Ruthie Angelovici.
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Rat parotid gland cell differentiation in three-dimensional culture. Baker OJ, Schulz DJ, Camden JM, Liao Z, Peterson TS, Seye CI, Petris MJ, Weisman GA. Tissue Engineering - Part C: Methods; 16(5):1135-1144.
Date published:
October 1, 2010
Featured in this article:
Olga Baker,
Michael Petris,
Gary Weisman.
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Convergent donor and acceptor substrate utilization among kinase ribozymes. Biondi E, Nickens DG, Warren S, Saran D, Burke DH. Nucleic Acids Research; 38(19):6785-6795.
Date published:
October 1, 2010
Featured in this article:
Donald Burke-Agüero.
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Therapeutics that directly increase SMN expression to treat spinal muscular atrophy. Shababi M, Mattis VB, Lorson CL. Drug News and Perspectives; 23(8):475-482.
Date published:
October 1, 2010
Featured in this article:
Christian Lorson.
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A maize thiamine auxotroph is defective in shoot meristem maintenance. Woodward JB, Abeydeera ND, Paul D, Phillips K, Rapala-Kozik M, Freeling M, Begley TP, Ealick SE, McSteen P, Scanlona MJ. Plant Cell; 22(10):3305-3317.
Date published:
October 1, 2010
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Paula McSteen.
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Divergent evolution in reverse transcriptase (RT) of HIV-1 group O and M lineages: Impact on structure, fitness, and sensitivity to nonnucleoside RT inhibitors. Tebit DM, Lobritz M, Lalonde M, Immonen T, Singh K, Sarafianos S, Herchenröder O, Kräusslich H-G, Arts EJ. Journal of Virology; 84(19):9817-9830.
Date published:
October 1, 2010
Featured in this article:
Kamlendra Singh.
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Extracellular ATP signaling in plants. Tanaka K, Gilroy S, Jones AM, Stacey G. Trends in Cell Biology; 20(10):601-608.
Date published:
October 1, 2010
Featured in this article:
Gary Stacey.
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Combinatorial selected peptides for protection of soybean against Phakopsora pachyrhizi. Fang ZD, Marois JJ, Stacey G, Schoelz JE, English JT, Schmidt FJ. Phytopathology; 100(10):1111-1117.
Date published:
October 1, 2010
Featured in this article:
Gary Stacey.
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Evolution of FW2.2-like (FWL) and PLAC8 genes in eukaryotes. Libault M, Stacey G. Plant Signaling and Behavior; 5(10):1226-1228.
Date published:
October 1, 2010
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Gary Stacey.
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Nonflowering plants possess a unique folate-dependent phenylalanine hydroxylase that is localized in chloroplasts. Pribat A, Noiriel A, Morse AM, Davis JM, Fouquet R, Loizeau K, Ravanel S, Frank W, Haas R, Reski R, Bedair M, Sumner LW, Hansona AD. Plant Cell; 22(10):3410-3422.
Date published:
October 1, 2010
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Lloyd Sumner.
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Root secretion of defense-related proteins is development-dependent and correlated with flowering time. De-la-Peña C, Badri DV, Lei Z, Watson BS, Branda MM, Silva-Filho MC, Sumner LW, Vivanco JM. Journal of Biological Chemistry; 285(40):30654-30665.
Date published:
October 1, 2010
Featured in this article:
Lloyd Sumner.
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Mass spectrometry analysis of soybean seed proteins: Optimization of gel-free quantitative workflow. Lee D-G, Houston NL, Stevenson SE, Ladics GS, McClain S, Privalle L, Thelen JJ. Analytical Methods; 2(10):1577-1583.
Date published:
October 1, 2010
Featured in this article:
Jay Thelen.
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A computational framework for influenza antigenic cartography. Cai Z, Zhang T, Wan X-F. PLoS Computational Biology; 6(10):1000949.
Date published:
October 1, 2010
Featured in this article:
XiuFeng “Henry” Wan.
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Two distinct mechanisms regulate recruitment of murine leukemia virus envelope protein to retroviral assembly sites. Lucas TM, Lyddon TD, Grosse SA, Johnson MC. Virology; 405(2):548-555.
Date published:
September 30, 2010
Featured in this article:
Marc Johnson.
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Novel venom gene discovery in the platypus. Whittington CM, Papenfuss AT, Locke DP, Mardis ER, Wilson RK, Abubucker S, Mitreva M, Wong ESW, Hsu AL, Kuchel PW, Belov K, Warren WC. Genome Biology; 11(9):R95.
Date published:
September 29, 2010
Featured in this article:
Wes Warren.
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Identification of transcription factor’s targets using tissue-specific transcriptomic data in Arabidopsis thaliana. Srivastava CP, Li P, Liu J, Xu D. BMC Systems Biology; 4(SUPPL. 2):2.
Date published:
September 13, 2010
Featured in this article:
Dong Xu.
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Altered microglial copper homeostasis in a mouse model of Alzheimer’s disease. Zheng Z, White C, Lee J, Peterson TS, Bush AI, Sun GY, Weisman GA, Petris MJ. Journal of Neurochemistry; 114(6):1630-1638.
Date published:
September 1, 2010
Featured in this article:
Gary Weisman,
Michael Petris.
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Proteomics inference of genes involved in host adaptation of Mycoplasma gallinarum. Wan X-F, Branton SL, Collier SD, Evans JD, Leigh SA, Pharr GT. Veterinary Microbiology; 145(1-2):177-184.
Date published:
September 1, 2010
Featured in this article:
XiuFeng “Henry” Wan.
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Template-directed ligation of tethered mononucleotides by T4 DNA ligase for kinase ribozyme selection. Nickens DG, Bardiya N, Patterson JT, Burke DH. PLoS ONE; 5(8):e12368.
Date published:
August 24, 2010
Featured in this article:
Donald Burke-Agüero.
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SNP discovery by high-throughput sequencing in soybean. Wu X, Ren C, Joshi T, Vuong T, Xu D, Nguyen HT. BMC Genomics; 11(1):469.
Date published:
August 11, 2010
Featured in this article:
Trupti Joshi,
Dong Xu.
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Syndecan-3 and Notch cooperate in regulating adult myogenesis. Pisconti A, Cornelison DDW, Olguín HC, Antwine TL, Olwin BB. Journal of Cell Biology; 190(3):427-441.
Date published:
August 9, 2010
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D Cornelison.
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Cardiac defects contribute to the pathology of spinal muscular atrophy models. Shababi M, Habibi J, Yang HT, Vale SM, Sewell WA, Lorson CL. Human Molecular Genetics; 19(20):4059-4071.
Date published:
August 9, 2010
Featured in this article:
Christian Lorson.
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Soybean metabolites regulated in root hairs in response to the symbiotic bacterium Bradyrhizobium japonicum. Brechenmacher L, Lei Z, Libault M, Findley S, Sugawara M, Sadowsky MJ, Sumner LW, Stacey G. Plant Physiology; 153(4):1808-1822.
Date published:
August 1, 2010
Featured in this article:
Lloyd Sumner,
Gary Stacey.
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Convergent evolution of chicken Z and human X chromosomes by expansion and gene acquisition. Bellott DW, Skaletsky H, Pyntikova T, Mardis ER, Graves T, Kremitzki C, Brown LG, Rozen S, Warren WC, Wilson RK, Page DC. Nature; 466(7306):612-616.
Date published:
July 29, 2010
Featured in this article:
Wes Warren.
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Introgression of B-genome chromosomes in a doubled haploid population of brassica napus × B. carinata. Navabi ZK, Parkin IAP, Pires JC, Xiong Z, Thiagarajah MR, Good AG, Rahman MH. Genome; 53(8):619-629.
Date published:
July 20, 2010
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.
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Protein structure selection based on consensus. Wang Q, Shang Y, Xu D. 2010 IEEE World Congress on Computational Intelligence, WCCI 2010 - 2010 IEEE Congress on Evolutionary Computation, CEC 2010; 5585949.
Date published:
July 18, 2010
Featured in this article:
Dong Xu.
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Kelch-like homologue 9 mutation is associated with an early onset autosomal dominant distal myopathy. Cirak S, Von Deimling F, Sachdev S, Errington WJ, Herrmann R, Bönnemann C, Brockmann K, Hinderlich S, Lindner TH, Steinbrecher A, Hoffmann K, Privé GG, Hannink M, Nürnberg P, Voit T. Brain; 133(7):2123-2135.
Date published:
July 1, 2010
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.
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An LYPSL late domain in the Gag protein contributes to the efficient release and replication of Rous sarcoma virus. Dilley KA, Gregory D, Johnson MC, Vogt VM. Journal of Virology; 84(13):6276-6287.
Date published:
July 1, 2010
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Marc Johnson.
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Phosphorylation regulates polarisation of chitin synthesis in Candida albicans. Lenardon MD, Milne SA, Mora-Montes HM, Kaffarnik FAR, Peck SC, Brown AJP, Munro CA, Gow NAR. Journal of Cell Science; 123(13):2199-2206.
Date published:
July 1, 2010
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Scott Peck.
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Integration of genetic, physical, and cytogenetic maps for Brassica rapa chromosome A7. Xiong Z, Kim JS, Pires JC. Cytogenetic and Genome Research; 129(1-3):190-198.
Date published:
July 1, 2010
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Preface. Birchler JA, Pires JC. Cytogenetic and Genome Research; 129(1-3):5.
Date published:
July 1, 2010
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.
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An integrated transcriptome atlas of the crop model Glycine max, and its use in comparative analyses in plants. Libault M, Farmer A, Joshi T, Takahashi K, Langley RJ, Franklin LD, He J, Xu D, May G, Stacey G. Plant Journal; 63(1):86-99.
Date published:
July 1, 2010
Featured in this article:
Trupti Joshi,
Dong Xu,
Gary Stacey.
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A fluorescence in Situ hybridization system for karyotyping soybean. Findley SD, Cannon S, Varala K, Du J, Ma J, Hudson ME, Birchler JA, Stacey G. Genetics; 185(3):727-744.
Date published:
July 1, 2010
Featured in this article:
Gary Stacey.
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LAP5 and LAP6 encode anther-specific proteins with similarity to chalcone synthase essential for pollen exine development in arabidopsis. Dobritsa AA, Lei Z, Nishikawa S, Urbanczyk-Wochniak E, Huhman DV, Preuss D, Sumner LW. Plant Physiology; 153(3):937-955.
Date published:
July 1, 2010
Featured in this article:
Lloyd Sumner.
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A quantitative mass spectrometry-based approach for identifying protein kinase clients and quantifying kinase activity. Huang Y, Houston NL, Tovar-Mendez A, Stevenson SE, Miernyk JA, Randall DD, Thelen JJ. Analytical Biochemistry; 402(1):69-76.
Date published:
July 1, 2010
Featured in this article:
Jay Thelen.
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Genome-wide functional annotation by integrating multiple microarray datasets using meta-analysis. Srivastava CP, Qiu J, Xu D. International Journal of Data Mining and Bioinformatics; 4(4):357-376.
Date published:
July 1, 2010
Featured in this article:
Dong Xu.
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Mutagenesis of 18 type III effectors reveals virulence function of XopZPXO99in xanthomonas oryzae pv. oryzae. Song C, Yang B. Molecular Plant-Microbe Interactions; 23(7):893-902.
Date published:
July 1, 2010
Featured in this article:
Bing Yang.
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Plant neighbor identity influences plant biochemistry and physiology related to defense. Broz AK, Broeckling CD, De-la-Peña C, Lewis MR, Greene E, Callaway RM, Sumner LW, Vivanco JM. BMC Plant Biology; 10:115.
Date published:
June 17, 2010
Featured in this article:
Lloyd Sumner.
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ProteinDBS v2.0: A web server for global and local protein structure search. Shyu C-R, Pang B, Chi P-H, Zhao N, Korkin D, Xu D. Nucleic Acids Research; 38(SUPPL. 2):W53-W58.
Date published:
June 10, 2010
Featured in this article:
Dong Xu.
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Genetic engineering for modern agriculture: Challenges and perspectives. Mittler R, Blumwald E. Annual Review of Plant Biology; 61:443-462.
Date published:
June 2, 2010
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Ron Mittler.
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Identification of a self-association domain in the Ewing’s sarcoma protein: A novel function for arginine-glycine-glycine rich motifs?. Shaw DJ, Morse R, Todd AG, Eggleton P, Lorson CL, Young PJ. Journal of Biochemistry; 147(6):885-893.
Date published:
June 1, 2010
Featured in this article:
Christian Lorson.
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P2Y2 nucleotide receptor-mediated responses in brain cells. Peterson TS, Camden JM, Wang Y, Seye CI, Wood WG, Sun GY, Erb L, Petris MJ, Weisman GA. Molecular Neurobiology; 41(2-3):356-366.
Date published:
June 1, 2010
Featured in this article:
Michael Petris,
Gary Weisman.
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A member of the highly conserved FWL (tomato FW2.2-like) gene family is essential for soybean nodule organogenesis. Libault M, Zhang X-C, Govindarajulu M, Qiu J, Ong YT, Brechenmacher L, Berg RH, Hurley-Sommer A, Taylor CG, Stacey G. Plant Journal; 62(5):852-864.
Date published:
June 1, 2010
Featured in this article:
Gary Stacey.
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Simvastatin stimulates production of the antiapoptotic protein Bcl-2 via endothelin-1 and NFATc3 in SH-SY5Y cells. Butterick TA, Igbavboa U, Eckert GP, Sun GY, Weisman GA, Müller WE, Wood WG. Molecular Neurobiology; 41(2-3):384-391.
Date published:
June 1, 2010
Featured in this article:
Gary Weisman.
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Targeting NADPH oxidase and phospholipases A₂ in alzheimer’s disease. Simonyi A, He Y, Sheng W, Sun AY, Wood WG, Weisman GA, Sun GY. Molecular Neurobiology; 41(2-3):73-86.
Date published:
June 1, 2010
Featured in this article:
Gary Weisman.
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PMirP: A pre-microRNA prediction method based on structure-sequence hybrid features. Zhao D, Wang Y, Luo D, Shi X, Wang L, Xu D, Yu J, Liang Y. Artificial Intelligence in Medicine; 49(2):127-132.
Date published:
June 1, 2010
Featured in this article:
Dong Xu.
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Development of monozygotic twin mouse embryos from the time of blastomere separation at the two-cell stage to blastocyst. Katayama M, Ellersieck MR, Roberts RM. Biology of Reproduction; 82(6):1237-1247.
Date published:
June 1, 2010
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A catalog of reference genomes from the human microbiome. Nelson KE, Weinstock GM, Highlander SK, Worley KC, Creasy HH, Wortman JR, Rusch DB, Mitreva M, Sodergren E, Chinwalla AT, Feldgarden M, Gevers D, Haas BJ, Madupu R, Ward DV, Birren BW, Gibbs RA, Methe B, Petrosino JF, Strausberg RL, Sutton GG, White OR, Wilson RK, Durkin S, Giglio MG, Gujja S, Howarth C, Kodira CD, Kyrpides N, Mehta T, Muzny DM, Pearson M, Pepin K, Pati A, Qin X, Yandava C, Zeng Q, Zhang L, Berlin AM, Chen L, Hepburn TA, Johnson J, McCorrison J, Miller J, Minx P, Nusbaum C, Russ C, Sykes SM, Tomlinson CM, Young S, Warren WC, Badger J, Crabtree J, Markowitz VM, Orvis J, Cree A, Ferriera S, Fulton LL, Fulton RS, Gillis M, Hemphill LD, Joshi V, Kovar C, Torralba M, Wetterstrand KA, Abouellleil A, Wollam AM, Buhay CJ, Ding Y, Dugan S, FitzGerald MG, Holder M, Hostetler J, Clifton SW, Allen-Vercoe E, Earl AM, Farmer CN, Liolios K, Surette MG, Russon Wortman J, Xu Q, Pohl C, Wilczek-Boney K, Zhu D. Science; 328(5981):994-999.
Date published:
May 21, 2010
Featured in this article:
Wes Warren.
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Erratum: Genome sequence of the palaeopolyploid soybean (Nature (2010) 463 (178-183)). Schmutz J, Cannon SB, Schlueter J, Ma J, Mitros T, Nelson W, Hyten DL, Song Q, Thelen JJ, Cheng J, Xu D, Hellsten U, May GD, Yu Y, Skaurai T, Umezawa T, Bhattacharyya MK, Sandhu D, Valliyodan B, Lindquist E, Peto M, Grant D, Shu S, Goodstein D, Barry K, Futrell-Griggs M, Abernathy B, Du J, Tian Z, Zhu L, Gill N, Joshi T, Libault M, Sethuraman A, Zhang X-C, Shinozaki K, Nguyen HT, Wing RA, Cregan P, Specht J, Grimwood J, Rokhsar D, Stacey G, Shoemaker RC, Jackson SA. Nature; 465(7294):120.
Date published:
May 6, 2010
Featured in this article:
Jay Thelen,
Dong Xu,
Trupti Joshi,
Gary Stacey.
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The Arabidopsis nitrate transporter NRT1.8 functions in nitrate removal from the xylem sap and mediates cadmium tolerance. Li J-Y, Fu Y-L, Pike SM, Bao J, Tian W, Zhang Y, Chen C-Z, Zhang Y, Li H-M, Huang J, Li L-G, Schroeder JI, Gassmann W, Gong J-M. Plant Cell; 22(5):1633-1646.
Date published:
May 1, 2010
Featured in this article:
Walter Gassmann.
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The genome of the western clawed frog xenopus tropicalis. Hellsten U, Harland RM, Gilchrist MJ, Hendrix D, Jurka J, Kapitonov V, Ovcharenko I, Putnam NH, Shu S, Taher L, Blitz IL, Blumberg B, Dichmann DS, Dubchak L, Amaya E, Detter JC, Fletcher R, Gerhard DS, Goodstein D, Graves T, Grigoriev IV, Grimwood J, Kawashima T, Lindquist E, Lucas SM, Mead PE, Mitros T, Ogino H, Ohta Y, Poliakov AV, Pollet N, Robert J, Salamov A, Sater AK, Schmutz J, Terry A, Vize PD, Warren WC, Wells D, Wills A, Wilson RK, Zimmerman LB, Zorn AM, Grainger R, Grammer T, Khokha MK, Richardson PM, Rokhsar DS. Science; 328(5978):633-636.
Date published:
April 30, 2010
Featured in this article:
Wes Warren.
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SeqRate: Sequence-based protein folding type classification and rates prediction. Lin GN, Wang Z, Xu D, Cheng J. BMC Bioinformatics; 11(SUPPL. 3):S1.
Date published:
April 29, 2010
Featured in this article:
Dong Xu.
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2-MeS-β,γ-CCl₂-ATP is a potent agent for reducing intraocular pressure. Eliahu S, Martín-Gil A, Perez De Lara MJ, Pintor J, Camden J, Weisman GA, Lecka J, Sévigny J, Fischer B. Journal of Medical Chemistry; 53(8):3305-3319.
Date published:
April 22, 2010
Featured in this article:
Gary Weisman.
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Spinal muscular atrophy: Mechanisms and therapeutic strategies. Lorson CL, Rindt H, Shababi M. Human Molecular Genetics; 19(R1):R111-R118.
Date published:
April 13, 2010
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Christian Lorson.
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Seed desiccation: a bridge between maturation and germination. Angelovici R, Galili G, Fernie AR, Fait A. Trends in Plant Science; 15(4):211-218.
Date published:
April 1, 2010
Featured in this article:
Ruthie Angelovici.
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A functional EDS1 ortholog is differentially regulated in powdery mildew resistant and susceptible grapevines and complements an Arabidopsis eds1 mutant. Gao F, Shu X, Ali MB, Howard S, Li N, Winterhagen P, Qiu W, Gassmann W. Planta; 231(5):1037-1047.
Date published:
April 1, 2010
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Walter Gassmann.
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Reactive oxygen species homeostasis and signalling during drought and salinity stresses. Miller G, Suzuki N, Ciftci-Yilmaz S, Mittler R. Plant, Cell and Environment; 33(4):453-467.
Date published:
April 1, 2010
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Ron Mittler.
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Homoeologous recombination in allopolyploids: The polyploid ratchet. Gaeta RT, Chris Pires J. New Phytologist; 186(1):18-28.
Date published:
April 1, 2010
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.
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Systems analysis of seed filling in Arabidopsis: Using general linear modeling to assess concordance of transcript and protein expression. Hajduch M, Hearne LB, Miernyk JA, Casteel JE, Joshi T, Agrawal GK, Song Z, Zhou M, Xu D, Thelen JJ. Plant Physiology; 152(4):2078-2087.
Date published:
April 1, 2010
Featured in this article:
Trupti Joshi,
Dong Xu,
Jay Thelen.
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Plantmetabolomics.org: A web portal for plant metabolomics experiments. Bais P, Moon SM, He K, Leitao R, Dreher K, Walk T, Sucaet Y, Barkan L, Wohlgemuth G, Roth MR, Wurtele ES, Dixon P, Fiehn O, Lange BM, Shulaev V, Sumner LW, Welti R, Nikolau BJ, Rhee SY, Dickerson JA. Plant Physiology; 152(4):1807-1816.
Date published:
April 1, 2010
Featured in this article:
Lloyd Sumner.
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The genome of a songbird. Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Künstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TAF, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Lin Y-C, George J, Sweedler J, Southey B, Gunaratne P, Watson M, Nam K, Backström N, Smeds L, Nabholz B, Itoh Y, Whitney O, Pfenning AR, Howard J, Völker M, Skinner MB, Griffin DK, Ye L, McLauren WM, Flicek P, Quesada V, Velasco G, Lopez-Otin C, Puente XS, Olender T, Lancet D, Smit AFA, Hubley R, Konkel MK, Walker JA, Batzer MA, Gu W, Pollock DD, Chen L, Chang Z, Eichler EE, Stapley J, Slate J, Ekblom R, Birkhead T, Burke T, Burt D, Scharff C, Adam I, Richard H, Sultan M, Soldatov A, Lehrach H, Edwards SV, Yang S-P, Li X, Graves T, Fulton L, Nelson J, Chinwalla A, Hou S, Mardis ER, Wilson RK. Nature; 464(7289):757-762.
Date published:
April 1, 2010
Featured in this article:
Wes Warren.
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Comparative genomic analysis of the zebra finch degradome provides new insights into evolution of proteases in birds and mammals. Quesada V, Velasco G, Puente XS, Warren WC, López-Otín C. BMC Genomics; 11(1):220.
Date published:
April 1, 2010
Featured in this article:
Wes Warren.
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Gene duplication and fragmentation in the zebra finch major histocompatibility complex. Balakrishnan CN, Ekblom R, Völker M, Westerdahl H, Godinez R, Kotkiewicz H, Burt DW, Graves T, Griffin DK, Warren WC, Edwards SV. BMC Biology; 8:29.
Date published:
April 1, 2010
Featured in this article:
Wes Warren.
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A novel insulin secretagogue based on a dinucleoside polyphosphate scaffold. Eliahu S, Barr HM, Camden J, Weisman GA, Fischer B. Journal of Medical Chemistry; 53(6):2472-2481.
Date published:
March 25, 2010
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Gary Weisman.
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Genome sequence of Cronobacter sakazakii BAA-894 and comparative genomic hybridization analysis with other cronobacter species. Kucerova E, Clifton SW, Xia X-Q, Long F, Porwollik S, Fulton L, Fronick C, Minx P, Kyung K, Warren W, Fulton R, Feng D, Wollam A, Shan N, Bhonagiri V, Nash WE, Hallsworth-Pepin K, Wilson RK, McClelland M, Forsythe SJ. PLoS ONE; 5(3):e9556.
Date published:
March 8, 2010
Featured in this article:
Wes Warren.
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P2Y2 nucleotide receptors mediate metalloprotease-dependent phosphorylation of epidermal growth factor receptor and ErbB3 in human salivary gland cells. Ratchford AM, Baker OJ, Camden JM, Rikka S, Petris MJ, Seye CI, Erb L, Weisman GA. Journal of Biological Chemistry; 285(10):7545-7555.
Date published:
March 5, 2010
Featured in this article:
Olga Baker,
Michael Petris,
Gary Weisman.
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Discovery of putative oocyte quality markers by comparative ExacTag proteomics. Powell MD, Manandhar G, Spate L, Sutovsky M, Zimmerman S, Sachdev SC, Hannink M, Prather RS, Sutovsky P. Proteomics - Clinical Applications; 4(3):337-351.
Date published:
March 1, 2010
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Pseudotyping incompatibility between HIV-1 and gibbon ape leukemia virus Env is modulated by Vpu. Lucas TM, Lyddon TD, Cannon PM, Johnson MC. Journal of Virology; 84(6):2666-2674.
Date published:
March 1, 2010
Featured in this article:
Marc Johnson.
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Auxin and monocot development. McSteen P. Cold Spring Harbor perspectives in biology; 2(3):a001479.
Date published:
March 1, 2010
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Paula McSteen.
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Genomic and coexpression analyses predict multiple genes involved in triterpene saponin biosynthesis in Medicago truncatula. Naoumkina MA, Modolo LV, Huhman DV, Urbanczyk-Wochniak E, Tang Y, Sumner LW, Dixon RA. Plant Cell; 22(3):850-866.
Date published:
March 1, 2010
Featured in this article:
Lloyd Sumner.
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Comparative genomics based on massive parallel transcriptome sequencing reveals patterns of substitution and selection across 10 bird species. Künstner A, Wolf JBW, Backström N, Whitney O, Balakrishnan CN, Day L, Edwards SV, Janes DE, Schlinger BA, Wilson RK, Jarvis ED, Warren WC, Ellegren H. Molecular Ecology; 19(SUPPL. 1):266-276.
Date published:
March 1, 2010
Featured in this article:
Wes Warren.
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A recombinant heavy chain antibody approach blocks ART2 mediated deletion of an iNKT cell population that upon activation inhibits autoimmune diabetes. Scheuplein F, Rissiek B, Driver JP, Chen Y-G, Koch-Nolte F, Serreze DV. Journal of Autoimmunity; 34(2):145-154.
Date published:
March 1, 2010
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John Driver.
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The promise of stem cell research in pigs and other ungulate species. Telugu BPVL, Ezashi T, Roberts RM. Stem Cell Reviews and Reports; 6(1):31-41.
Date published:
March 1, 2010
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.
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Identification of shared single copy nuclear genes in Arabidopsis, Populus, Vitis and Oryza and their phylogenetic utility across various taxonomic levels. Duarte JM, Wall PK, Edger PP, Landherr LL, Ma H, Pires JC, Leebens-Mack J, Depamphilis CW. BMC Evolutionary Biology; 10(1):61.
Date published:
February 24, 2010
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.
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Tight junctions in salivary epithelium. Baker, OJ. Journal of Biomedicine and Biotechnology; 2010:278948.
Date published:
February 18, 2010
Featured in this article:
Olga Baker.
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Structural aspects of drug resistance and inhibition of HIV-1 reverse transcriptase. Singh K, Marchand B, Kirby KA, Michailidis E, Sarafianos SG. Viruses; 2(2):606-638.
Date published:
February 1, 2010
Featured in this article:
Kamlendra Singh.
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Complete transcriptome of the soybean root hair cell, a single-cell model, and its alteration in response to Bradyrhizobium japonicum infection. Libault M, Farmer A, Brechenmacher L, Drnevich J, Langley RJ, Bilgin DD, Radwan O, Neece DJ, Clough SJ, May GD, Stacey G. Plant Physiology; 152(2):541-552.
Date published:
February 1, 2010
Featured in this article:
Gary Stacey.
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Invariant natural killer T-cell control of type 1 diabetes: A dendritic cell genetic decision of a silver bullet or Russian roulette. Driver JP, Scheuplein F, Chen Y-G, Grier AE, Wilson SB, Serreze DV. Diabetes; 59(2):423-432.
Date published:
February 1, 2010
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John Driver.
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Chimpanzee and human y chromosomes are remarkably divergent in structure and gene content. Hughes JF, Skaletsky H, Pyntikova T, Graves TA, Van Daalen SKM, Minx PJ, Fulton RS, McGrath SD, Locke DP, Friedman C, Trask BJ, Mardis ER, Warren WC, Repping S, Rozen S, Wilson RK, Page DC. Nature; 463(7280):536-539.
Date published:
January 28, 2010
Featured in this article:
Wes Warren.
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Recent advances in plant metabolomics and greener pastures. Sumner LW. F1000 Biology Reports; 2(1):7.
Date published:
January 27, 2010
Featured in this article:
Lloyd Sumner.
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Prediction of novel miRNAs and associated target genes in Glycine max. Joshi T, Yan Z, Libault M, Jeong D-H, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G. BMC Bioinformatics; 11(SUPPLL.1):S14.
Date published:
January 18, 2010
Featured in this article:
Trupti Joshi,
Dong Xu,
Gary Stacey.
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SoyDB: A knowledge database of soybean transcription factors. Wang Z, Libault M, Joshi T, Valliyodan B, Nguyen HT, Xu D, Stacey G, Cheng J. BMC Plant Biology; 10:14.
Date published:
January 18, 2010
Featured in this article:
Trupti Joshi,
Dong Xu,
Gary Stacey.
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Genome sequence of the palaeopolyploid soybean. Schmutz J, Cannon SB, Schlueter J, Ma J, Mitros T, Nelson W, Hyten DL, Song Q, Thelen JJ, Cheng J, Xu D, Hellsten U, May GD, Yu Y, Skaurai T, Umezawa T, Bhattacharyya MK, Sandhu D, Valliyodan B, Lindquist E, Peto M, Grant D, Shu S, Goodstein D, Barry K, Futrell-Griggs M, Abernathy B, Du J, Tian Z, Zhu L, Gill N, Joshi T, Libault M, Sethuraman A, Zhang X-C, Shinozaki K, Nguyen HT, Wing RA, Cregan P, Specht J, Grimwood J, Rokhsar D, Stacey G, Shoemaker RC, Jackson SA. Nature; 463(7278):178-183.
Date published:
January 14, 2010
Featured in this article:
Jay Thelen,
Dong Xu,
Trupti Joshi,
Gary Stacey.
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Spatiotemporal structure of molecular evolution of H5N1 highly pathogenic avian influenza viruses in Vietnam. Carrel MA, Emch M, Jobe RT, Moody A, Wan X-F. PLoS ONE; 5(1):e8631.
Date published:
January 8, 2010
Featured in this article:
XiuFeng “Henry” Wan.
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Trans-splicing-mediated improvement in a severe mouse model of spinal muscular atrophy. Coady TH, Lorson CL. Journal of Neuroscience; 30(1):126-130.
Date published:
January 6, 2010
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Christian Lorson.
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Stress-induced ER to Golgi translocation of ceramide synthase 1 is dependent on proteasomal processing. Sridevi P, Alexander H, Laviad EL, Min J, Mesika A, Hannink M, Futerman AH, Alexander S. Experimental Cell Research; 316(1):78-91.
Date published:
January 1, 2010
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.
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Effect of diet on the survival and phenotype of a mouse model for spinal muscular atrophy. Butchbach MER, Rose FF Jr, Rhoades S, Marston J, McCrone JT, Sinnott R, Lorson CL. Biochemical and Biophysical Research Communications; 391(1):835-840.
Date published:
January 1, 2010
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Christian Lorson.
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Inhibitors of foot and mouth disease virus targeting a novel pocket of the RNA-dependent RNA polymerase. Durk RC, Singh K, Cornelison CA, Rai DK, Matzek KB, Leslie MD, Schafer E, Marchand B, Adedeji A, Michailidis E, Dorst CA, Moran J, Pautler C, Rodriguez LL, Mcintosh MA, Rieder E, Sarafianos SG. PLoS ONE; 5(12):e15049.
Date published:
January 1, 2010
Featured in this article:
Kamlendra Singh.
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Soybean root hairs: A valuable system to investigate plant biology at the cellular level. Libault M, Farmer A, Brechenmacher L, May GD, Stacey G. Plant Signaling and Behavior; 5(4):419-421.
Date published:
January 1, 2010
Featured in this article:
Gary Stacey.
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Extracellular nucleotides elicit cytosolic free calcium oscillations in arabidopsis. Tanaka K, Swanson SJ, Gilroy S, Stacey G. Plant Physiology; 154(2):705-719.
Date published:
January 1, 2010
Featured in this article:
Gary Stacey.
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TrichOME: A comparative omics database for plant trichomes. Dai X, Wang G, Yang DS, Tang Y, Broun P, Marks MD, Sumner LW, Dixon RA, Zhao PX. Plant Physiology; 152(1):44-54.
Date published:
January 1, 2010
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Lloyd Sumner.
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Improvement of drought tolerance in white clover (Trifolium repens) by transgenic expression of a transcription factor gene WXP1. Jiang Q, Zhang J-Y, Guo X, Bedair M, Sumner L, Bouton J, Wang Z-Y. Functional Plant Biology; 37(2):157-165.
Date published:
January 1, 2010
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Lloyd Sumner.
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The plastid isoform of triose phosphate isomerase is required for the postgerminative transition from heterotrophic to autotrophic growth in Arabidopsis. Chen M, Thelen JJ. Plant Cell; 22(1):77-90.
Date published:
January 1, 2010
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Jay Thelen.
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The essential role of plastidial triose phosphate isomerase in the integration of seed reserve mobilization and seedling establishment. Chen M, Thelen JJ. Plant Signaling and Behavior; 5(5):583-585.
Date published:
January 1, 2010
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Jay Thelen.
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Development of Chemical Bond based Elastic Network Model and its application in identifying functional motions in H5N1 highly pathogenic avian influenza viruses. Jang Y, Wan X-F. International Journal of Bioinformatics Research and Applications; 6(1):1-11.
Date published:
January 1, 2010
Featured in this article:
XiuFeng “Henry” Wan.
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The P2Y₂ nucleotide receptor in vascular inflammation and angiogenesis. Seye CI, Weisman GA. Extracellular ATP and Adenosine as Regulators of Endothelial Cell Function: Implications for Health and Disease; 57-72.
Date published:
January 1, 2010
Featured in this article:
Gary Weisman.
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Bioinformatics methods for protein identification using Peptide mass fingerprinting. Song Z, Chen L, Xu D. Methods in molecular biology (Clifton, N.J.); 604:7-22.
Date published:
January 1, 2010
Featured in this article:
Dong Xu.
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MUFOLD: A new solution for protein 3D structure prediction. Zhang J, Wang Q, Barz B, He Z, Kosztin L, Shang Y, Xu D. Proteins: Structure, Function and Bioinformatics; 78(5):1137-1152.
Date published:
January 1, 2010
Featured in this article:
Dong Xu.
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The effect of superovulation on the contributions of individual blastomeres from 2-cell stage CF1 mouse embryos to the blastocyst. Katayama M, Roberts RM. Internation Journal of Devlopmental Biology; 54(4):675-681.
Date published:
January 1, 2010
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.
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2009
Identification of a tripartite import signal in the Ewing Sarcoma protein (EWS). Shaw DJ, Morse R, Todd AG, Eggleton P, Lorson CL, Young PJ. Biochemical and Biophysical Research Communications; 390(4):1197-1201.
Date published:
December 25, 2009
Featured in this article:
Christian Lorson.
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Dihydro-CDDO-trifluoroethyl amide (dh404), A novel Nrf2 activator, suppresses oxidative stress in cardiomyocytes. Ichikawa T, Li J, Meyer CJ, Janicki JS, Hannink M, Cui T. PLoS ONE; 4(12):e8391.
Date published:
December 21, 2009
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.
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Mechanism of inhibition of HIV-1 reverse transcriptase by 4′-ethynyl-2-fluoro-2′-deoxyadenosine triphosphate, a translocation-defective reverse transcriptase inhibitor. Michailidis E, Marchand B, Kodama EN, Singh K, Matsuoka M, Kirby KA, Ryan EM, Sawani AM, Nagy E, Ashida N, Mitsuya H, Parniak MA, Sarafianos SG. Journal of Biological Chemistry; 284(51):35681-35691.
Date published:
December 18, 2009
Featured in this article:
Kamlendra Singh.
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C. elegans mitotic cyclins have distinct as well as overlapping functions in chromosome segregation. Van Der Voet M, Lorson MA, Srinivasan DG, Bennett KL, Van Den Heuvel S. Cell Cycle; 8(24):4091-4102.
Date published:
December 15, 2009
Featured in this article:
Monique Lorson.
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A role for the ATP7A copper-transporting ATPase in macrophage bactericidal activity. White C, Lee J, Kambe T, Fritsche K, Petris MJ. Journal of Biological Chemistry; 284(49):33949-33956.
Date published:
December 4, 2009
Featured in this article:
Michael Petris.
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Deciphering transcriptional and metabolic networks associated with lysine metabolism during arabidopsis seed developmen. Angelovici R, Fait A, Zhu X, Szymanski J, Feldmesser E, Fernie AR, Galili G. Plant Physiology; 151(4):2058-2072.
Date published:
December 1, 2009
Featured in this article:
Ruthie Angelovici.
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PKCαβγ- and PKCδ-dependent endocytosis of NBCe1-A and NBCe1-B in salivary parotid acinar cells. Perry C, Baker OJ, Reyland ME, Grichtchenko II. American Journal of Physiology - Cell Physiology; 297(6):C1409-1423.
Date published:
December 1, 2009
Featured in this article:
Olga Baker.
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RNA-targeting approaches for neuromuscular diseases. Le Roy F, Charton K, Lorson CL, Richard I. Trends in Molecular Medicine; 15(12):580-591.
Date published:
December 1, 2009
Featured in this article:
Christian Lorson.
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Subcutaneous administration of TC007 reduces disease severity in an animal model of SMA. Mattis VB, Fosso MY, Chang C-W, Lorson CL. BMC Neuroscience; 10:142.
Date published:
November 30, 2009
Featured in this article:
Christian Lorson.
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Complexity of genome evolution by segmental rearrangement in Brassica rapa revealed by sequence-level analysis. Trick M, Kwon S-J, Choi SR, Fraser F, Soumpourou E, Drou N, Wang Z, Lee SY, Yang T-J, Mun J-H, Paterson AH, Town CD, Pires JC, Pyo Lim Y, Park B-S, Bancroft I. BMC Genomics; 10:539.
Date published:
November 18, 2009
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.
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Isotope pattern vector based tandem mass spectral data calibration for improved peptide and protein identification. Zhang J, Xu D, Gao W, Lin G, He S. Rapid Communications in Mass Spectrometry; 23(21):3448-3456.
Date published:
November 15, 2009
Featured in this article:
Dong Xu.
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Molecular and chromosomal evidence for allopolyploidy in soybean. Gill N, Findley S, Walling JG, Hans C, Ma J, Doyle J, Stacey G, Jackson SA. Plant Physiology; 151(3):1167-1174.
Date published:
November 9, 2009
Featured in this article:
Gary Stacey.
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Resolving the evolution of extant and extinct ruminants with high-throughput phylogenomics. Decker JE, Pires JC, Conant GC, McKay SD, Heaton MP, Chen K, Cooper A, Vilkki J, Seabury CM, Caetano AR, Johnson GS, Brenneman RA, Hanotte O, Eggert LS, Wiener P, Kim J-J, Kim KS, Sonstegard TS, Van Tassell CP, Neibergs HL, McEwan JC, Brauning R, Coutinho LL, Babar ME, Wilson GA, McClure MC, Rolf MM, Kim J, Schnabel RD, Taylor JF. Proceedings of the National Academy of Sciences of the United States of America; 106(44):18644-18649.
Date published:
November 3, 2009
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.
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Arabidopsis OPT6 is an oligopeptide transporter with exceptionally broad substrate specificity. Pike S, Patel A, Stacey G, Gassmann W. Plant and Cell Physiology; 50(11):1923-1932.
Date published:
November 1, 2009
Featured in this article:
Gary Stacey,
Walter Gassmann.
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Legume transcription factor genes: What makes legumes so special?. Libault M, Joshi T, Benedito VA, Xu D, Udvardi MK, Stacey G. Plant Physiology; 151(3):991-1001.
Date published:
November 1, 2009
Featured in this article:
Trupti Joshi,
Dong Xu,
Gary Stacey.
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Large-scale analysis of putative soybean regulatory gene expression identifies a Myb gene involved in soybean nodule development. Libault M, Joshi T, Takahashi K, Hurley-Sommer A, Puricelli K, Blake S, Finger RE, Taylor CS, Xu D, Nguyen HT, Stacey G. Plant Physiology; 151(3):1207-1220.
Date published:
November 1, 2009
Featured in this article:
Trupti Joshi,
Dong Xu,
Gary Stacey.
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Integrated metabolite and transcript profiling identify a biosynthetic mechanism for hispidol in Medicago truncatula cell cultures. Farag MA, Deavours BE, de Fáltima A, Naoumkina M, Dixon RA, Sumner LW. Plant Physiology; 151(3):1096-1113.
Date published:
November 1, 2009
Featured in this article:
Lloyd Sumner.
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A WD40 repeat protein from Medicago truncatula is necessary for tissue-specific anthocyanin and proanthocyanidin biosynthesis but not for trichome development. Pang Y, Wenger JP, Saathoff K, Peel GJ, Wen J, Human D, Allen SN, Tang Y, Cheng X, Tadege M, Ratet P, Mysore KS, Sumner LW, Marks MD, Dixon RA. Plant Physiology; 151(3):1114-1129.
Date published:
November 1, 2009
Featured in this article:
Lloyd Sumner.
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Genome 10K: A proposal to obtain whole-genome sequence for 10000 vertebrate species. Haussler D, O'Brien SJ, Ryder OA, Keither Barker F, Clamp M, Crawford AJ, Hanner R, Hanotte O, Johnson WE, McGuire JA, Miller W, Murphy RW, Murphy WJ, Sheldon FM, Sinervo B, Venkaesh B, Wiley EO, Allendorf FW, Amato G, Scott Baker C, Bauer A, Beja-Pereira A, Bermingham E, Bernardi G, Bonvicino CR, Brenner S, Burke T, Cracraft J, Diekhans M, Edwards S, Ericson PGP, Estes J, Fjelsda J, Flesness N, Gamble T, Gaubert P, Graphodatsky AS, Marshall Graves JA, Green ED, Gree RE, Hackett S, Hebert P, Helgen KM, Joseph L, Kessing B, Kingsley DM, Lewin HA, Luikart G, Martelli P, Moreira MAM, Nguyen N, Ortí G, Pike BL, Rawson DM, Schuster SC, Seuánez HN, Bradley Shaffer H, Springer MS, Stuart JM, Sumner J, Teeling E, Vrijenhoek RC, Ward RD, Warren WC, Wayne R, Williams TM, Wolfe ND, Zhang Y-P, Graves J, Springer M, Williams T, Wolfe N, Edwards SV, Orti G, Rawson DM, Felsenfeld A, Stuart JM, Turner S. Journal of Heredity; 100(6):659-674.
Date published:
November 1, 2009
Featured in this article:
Wes Warren.
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Tetherin Inhibits HIV-1 Release by Directly Tethering Virions to Cells. Perez-Caballero D, Zang T, Ebrahimi A, McNatt MW, Gregory DA, Johnson MC, Bieniasz PD. Cell; 139(3):499-511.
Date published:
October 30, 2009
Featured in this article:
Marc Johnson.
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Delivery of a read-through inducing compound, TC007, lessens the severity of a spinal muscular atrophy animal model. Mattis VB, Ebert AD, Fosso MY, Chang C-W, Lorson CL. Human Molecular Genetics; 18(20):3906-3913.
Date published:
October 15, 2009
Featured in this article:
Christian Lorson.
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3D timelapse analysis of muscle satellite cell motility. Siegel A, Atchison K, Fisher KE, Davis GE, Cornelison DDW. Stem Cells; 27(10):2527-2538.
Date published:
October 1, 2009
Featured in this article:
D Cornelison.
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Quantitative proteomics of seed filling in castor: Comparison with soybean and rapeseed reveals differences between photosynthetic and nonphotosynthetic seed metabolism. Houston NL, Hajduch M, Thelen JJ. Plant Physiology; 151(2):857-868.
Date published:
October 1, 2009
Featured in this article:
Jay Thelen.
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P2Y₂ receptor transcription is increased by NF-κB and stimulates cyclooxygenase-2 expression and PGE₂ released by intestinal epithelial cells. Degagné E, Grbic DM, Dupuis A-A, Lavoie EG, Langlois C, Jain N, Weisman GA, Sévigny J, Gendron F-P. Journal of Immunology; 183(7):4521-4529.
Date published:
October 1, 2009
Featured in this article:
Gary Weisman.
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Induced pluripotent stem cells from swine (Sus scrofa): Why they may prove to be important. Roberts RM, Telugu BPVL, Ezashi T. Cell Cycle; 8(19):3078-3081.
Date published:
October 1, 2009
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.
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Unraveling Δ1-pyrroline-5-carboxylate-proline cycle in plants by uncoupled expression of proline oxidation enzymes. Miller G, Honig A, Stein H, Suzuki N, Mittler R, Zilberstein A. Journal of Biological Chemistry; 284(39):26482-26492.
Date published:
September 25, 2009
Featured in this article:
Ron Mittler.
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High-Throughput Technologies and Functional Genomics. Wan X-F, Thompson DK. Systems Biology and Synthetic Biology; 67-113.
Date published:
September 22, 2009
Featured in this article:
XiuFeng “Henry” Wan.
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ARS5 is a component of the 26S proteasome complex, and negatively regulates thiol biosynthesis and arsenic tolerance in Arabidopsis. Sung D-Y, Kim T-H, Komives EA, Mendoza-Cózatl DG, Schroeder JI. Plant Journal; 59(5):802-813.
Date published:
September 1, 2009
Featured in this article:
David Mendoza-Cózatl.
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Thiamin confers enhanced tolerance to oxidative stress in Arabidopsis. Tunc-Ozdemir M, Miller G, Song L, Kim J, Sodek A, Koussevitzky S, Misra AN, Mittler R, Shintani D. Plant Physiology; 151(1):421-432.
Date published:
September 1, 2009
Featured in this article:
Ron Mittler.
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Map kinase phosphatase1 and protein tyrosine phosphatase1 are repressors of salicylic acid synthesis and SNC1 -mediated responses in Arabidopsis. Bartels S, Anderson JC, González Besteiro MA, Carreri A, Hirt H, Buchala A, Métraux J-P, Peck SC, Ulm R. Plant Cell; 21(9):2884-2897.
Date published:
September 1, 2009
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Scott Peck.
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Mitotic instability in resynthesized and natural polyploids of the genus Arabidopsis (Brassicaceae). Wright KM, Pires JC, Madlung A. American Journal of Botany; 96(9):1656-1664.
Date published:
September 1, 2009
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Two MATE proteins play a role in iron efficiency in soybean. Rogers EE, Wu X, Stacey G, Nguyen HT. Journal of Plant Physiology; 166(13):1453-1459.
Date published:
September 1, 2009
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Gary Stacey.
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The plant NADPH oxidase RBOHD mediates rapid systemic signaling in response to diverse stimuli. Miller G, Schlauch K, Tam R, Cortes D, Torres MA, Shulaev V, Dangl JL, Mittler R. Science Signaling; 2(84):ra45.
Date published:
August 18, 2009
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Ron Mittler.
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Proteomics: Setting the Stage for Systems Biology. Peck SC. Annual Plant Reviews; 35:243-257.
Date published:
August 18, 2009
Featured in this article:
Scott Peck.
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Amyloid β-protein stimulates trafficking of cholesterol and caveolin-1 from the plasma membrane to the Golgi complex in mouse primary astrocytes. Igbavboa U, Sun GY, Weisman GA, He Y, Wood WG. Neuroscience; 162(2):328-338.
Date published:
August 18, 2009
Featured in this article:
Gary Weisman.
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Parallel expression evolution of oxidative stress-related genes in fiber from wild and domesticated diploid and polyploid cotton (Gossypium). Chaudhary B, Hovav R, Flagel L, Mittler R, Wendel JF. BMC Genomics; 10:378.
Date published:
August 17, 2009
Featured in this article:
Ron Mittler.
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Cul3-mediated Nrf2 ubiquitination and antioxidant response element (ARE) activation are dependent on the partial molar volume at position 151 of Keap1. Eggler AL, Small E, Hannink M, Mesecar AD. Biochemical Journal; 422(1):171-180.
Date published:
August 15, 2009
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Touch induces ATP release in Arabidopsis roots that is modulated by the heterotrimeric G-protein complex. Weerasinghe RR, Swanson SJ, Okada SF, Garrett MB, Kim S-Y, Stacey G, Boucher RC, Gilroy S, Jones AM. FEBS Letters; 583(15):2521-2526.
Date published:
August 6, 2009
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Gary Stacey.
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Resistance to the Pseudomonas syringae effector hopA1 is governed by the TIR-NBS-LRR Protein rps6 and is enhanced by mutations in srfr1. Kim SH, Kwon SI, Saha D, Anyanwu NC, Gassmann W. Plant Physiology; 150(4):1723-1732.
Date published:
August 1, 2009
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Walter Gassmann.
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A new DNA polymerase i from Geobacillus caldoxylosilyticus TK4: Cloning, characterization, and mutational analysis of two aromatic residues. Sandalli C, Singh K, Modak MJ, Ketkar A, Canakci S, Demit I, Belduz AO. Applied Microbiology and Biotechnology; 84(1):105-117.
Date published:
August 1, 2009
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Kamlendra Singh.
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Ethylene insensitivity conferred by a mutated arabidopsis ethylene receptor gene alters nodulation in transgenic lotus japonicus. Lohar D, Stiller J, Kam J, Stacey G, Gresshoff PM. Annals of Botany; 104(2):277-285.
Date published:
August 1, 2009
Featured in this article:
Gary Stacey.
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Spontaneous and induced variability of allergens in commodity crops: Ara h 2 in peanut as a case study. Ozias-Akins P, Ramos ML, Faustinelli P, Chu Y, Maleki S, Thelen JJ, Huntley J, Arias K, Jordana M. Regulatory Toxicology and Pharmacology; 54(3 SUPPL.):S37-S40.
Date published:
August 1, 2009
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Jay Thelen.
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Proteomics tools and resources for investigating protein allergens in oilseeds. Thelen JJ. Regulatory Toxicology and Pharmacology; 54(3 SUPPL.):S41-S45.
Date published:
August 1, 2009
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Jay Thelen.
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Development of a novel transgenic rat overexpressing the P2Y₂ nucleotide receptor using a lentiviral vector. Agca C, Seye C, Kashuba Benson CM, Rikka S, Chan AWS, Weisman GA, Agca Y. Journal fo Vascular Research; 46(5):447-458.
Date published:
August 1, 2009
Featured in this article:
Gary Weisman.
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Host and pathogen factors controlling the Rice-Xanthomonas oryzae interaction. White FF, Yang B. Plant Physiology; 150(4):1677-1686.
Date published:
August 1, 2009
Featured in this article:
Bing Yang.
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Nef Proteins from Simian Immunodeficiency Viruses Are Tetherin Antagonists. Zhang F, Wilson SJ, Landford WC, Virgen B, Gregory D, Johnson MC, Munch J, Kirchhoff F, Bieniasz PD, Hatziioannou T. Cell Host and Microbe; 6(1):54-67.
Date published:
July 23, 2009
Featured in this article:
Marc Johnson.
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Derivation of induced pluripotent stem cells from pig somatic cells. Ezashi T, Telugu BPVL, Alexenko AP, Sachdev S, Sinha S, Roberts RM. Proceedings of the National Academy of Sciences of the United States of America; 106(27):10993-10998.
Date published:
July 7, 2009
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Ceramide synthase 1 is regulated by proteasomal mediated turnover. Sridevi P, Alexander H, Laviad EL, Pewzner-Jung Y, Hannink M, Futerman AH, Alexander S. Biochimica et Biophysica Acta - Molecular Cell Research; 1793(7):1218-1227.
Date published:
July 1, 2009
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Comparative analysis between homoeologous genome segments of brassica napus and its progenitor species reveals extensive sequence-level divergence. Cheung F, Trick M, Drou N, Lim YP, Park JY, Kwon SJ, Kim JA, Scott R, Chris Pires J, Paterson AH, Town C, Bancroft I. Plant Cell; 21(7):1912-1928.
Date published:
July 1, 2009
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Gene and genome duplications: The impact of dosage-sensitivity on the fate of nuclear genes. Edger PP, Pires JC. Chromosome Research; 17(5):699-717.
Date published:
July 1, 2009
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Advances in molecular evolution of influenza a virus. Wan X-F, Emch M, Zhao Z-M. Global View of the Fight Against Influenza; 31-57.
Date published:
July 1, 2009
Featured in this article:
XiuFeng “Henry” Wan.
Expression of bovine interferon-tau variants according to sex and age of conceptuses. Walker AM, Kimura K, Roberts RM. Theriogenology; 72(1):44-53.
Date published:
July 1, 2009
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.
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Progressive accumulation of epigenetic heterogeneity during human ES cell culture. Tanasijevic B, Dai B, Ezashi T, Livingston K, Roberts RM, Rasmussen TP. Epigenetics; 4(5):330-338.
Date published:
July 1, 2009
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Interleukin-1β enhances nucleotide-induced and α-secretase- dependent amyloid precursor protein processing in rat primary cortical neurons via up-regulation of the P2Y2 receptor. Kong Q, Peterson TS, Baker O, Stanley E, Camden J, Seye CI, Erb L, Simonyi A, Wood WG, Sun GY, Weisman GA. Journal of Neurochemistry; 109(5):1300-1310.
Date published:
June 1, 2009
Featured in this article:
Olga Baker,
Gary Weisman.
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Proteomic profiling of tandem affinity purified 14-3-3 protein complexes in Arabidopsis thaliana. Chang I-F, Curran A, Woolsey R, Quilici D, Cushman JC, Mittler R, Harmon A, Harper JF. Proteomics; 9(11):2967-2985.
Date published:
June 1, 2009
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Ron Mittler.
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Proteome analysis of Pithecellobium dulce seeds using two-dimensional gel electrophoresis and tandemmass spectrometry. Sawasdipuksa N, Sumner LW, Lei Z, Sangvanicha P. Journal of the Science of Food and Agriculture; 89(8):1284-1291.
Date published:
June 1, 2009
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Lloyd Sumner.
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Evolution analysis of the matrix (M) protein genes of 17 H9N2 chicken influenza viruses isolated in northern China during 1998-2008. Huang Y, Hu B, Wen X, Cao S, Xu D, Zhang X, Khan MI. Virus Genes; 38(3):398-403.
Date published:
June 1, 2009
Featured in this article:
Dong Xu.
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Confidence assessment for protein identification by using peptide-mass fingerprinting data. Song Z, Chen L, Xu D. Proteomics; 9(11):3090-3099.
Date published:
June 1, 2009
Featured in this article:
Dong Xu.
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Autoimmunization of ewes against pregnancy-associated glycoproteins does not interfere with the establishment and maintenance of pregnancy. Egen TE, Ealy Ad, Landon LA, Roberts RM, Green JA. Animal; 3(6):850-857.
Date published:
June 1, 2009
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.
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Characterization of a highly pathogenic avian influenza H5N1 virus sublineage in poultry seized at ports of entry into Vietnam. Nguyen T, Davis CT, Stembridge W, Shu B, Balish A, Inui K, Do HT, Ngo HT, Wan X-F, McCarron M, Lindstrom SE, Cox NJ, Nguyen CV, Klimov AI, Donis RO. Virology; 387(2):250-256.
Date published:
May 10, 2009
Featured in this article:
XiuFeng “Henry” Wan.
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Foreign glycoproteins can be actively recruited to virus assembly sites during pseudotyping. Jorgenson RL, Vogt VM, Johnson MC. Journal of Virology; 83(9):4060-4067.
Date published:
May 1, 2009
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Marc Johnson.
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Delivery of bifunctional RNAs that target an intronic repressor and increase SMN levels in an animal model of spinal muscular atrophy. Baughan TD, Dickson A, Osman EY, Lorson CL. Human Molecular Genetics; 18(9):1600-1611.
Date published:
May 1, 2009
Featured in this article:
Christian Lorson.
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sparse inflorescence1, barren inflorescence1 and barren stalk1 promote cell elongation in maize inflorescence development. Barazesh S, Nowbakht C, McSteen P. Genetics; 182(1):403-406.
Date published:
May 1, 2009
Featured in this article:
Paula McSteen.
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Chromium uptake, retention and reduction in photosynthetic Euglena gracilis. García-García JD, Rodríguez-Zavala JS, Jasso-Chávez R, Mendoza-Cozatl D, Moreno-Sánchez R. Archives of Microbiology; 191(5):431-440.
Date published:
May 1, 2009
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David Mendoza-Cózatl.
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Copper transport into the secretory pathway is regulated by oxygen in macrophages. White C, Kambe T, Fulcher YG, Sachdev SW, Bush AI, Fritsche K, Lee J, Quinn TP, Petris MJ. Journal of Cell Science; 122(9):1315-1321.
Date published:
May 1, 2009
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Michael Petris.
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System analysis of an arabidopsis mutant altered in de novo fatty acid synthesis reveals diverse changes in seed composition and metabolism. Chen M, Mooney BP, Hajduch M, Joshi T, Zhou M, Xu D, Thelen JJ. Plant Physiology; 150(1):27-41.
Date published:
May 1, 2009
Featured in this article:
Trupti Joshi,
Dong Xu,
Jay Thelen.
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Erratum: Flavones and flavonols play distinct critical roles during nodulation of Medicago truncatula by Sinorhizobium meliloti (Plant Journal (2009) 57 (171-183)). Zhang J, Subramanian S, Stacey G, Yu O. Plant Journal; 58(3):538.
Date published:
May 1, 2009
Featured in this article:
Gary Stacey.
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Core and periphery structures in protein interaction networks. Luo F, Li B, Wan X-F, Scheuermann RH. BMC Bioinformatics; 10(SUPPL. 4):S8.
Date published:
April 29, 2009
Featured in this article:
XiuFeng “Henry” Wan.
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Farm animal research in Crisis. Roberts RM, Smith GW, Bazer FW, Cibelli J, Seidel GE Jr, Bauman DE, Reynolds LP, Ireland JJ. Science; 324(5926):468-469.
Date published:
April 24, 2009
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.
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Characterization of the bovine type I IFN locus: Rearrangements, expansions, and novel subfamilies. Walker AM, Roberts RM. BMC Genomics; 10:187.
Date published:
April 24, 2009
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Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana. Jones AME, MacLean D, Studholme DJ, Serna-Sanz A, Andreasson E, Rathjen JP, Peck SC. Journal of Proteomics; 72(3):439-451.
Date published:
April 13, 2009
Featured in this article:
Scott Peck.
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Validation of gel-free, label-free quantitative proteomics approaches: Applications for seed allergen profiling. Stevenson SE, Chu Y, Ozias-Akins P, Thelen JJ. Journal of Proteomics; 72(3):555-566.
Date published:
April 13, 2009
Featured in this article:
Jay Thelen.
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A new machine learning approach for protein phosphorylation site prediction in plants. Gao J, Agrawal GK, Thelen JJ, Obradovic Z, Dunker AK, Xu D. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); 5462 LNBI:18-29.
Date published:
April 8, 2009
Featured in this article:
Jay Thelen,
Dong Xu.
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BARREN INFLORESCENCE2 interaction with zmPIN1a suggests a role in auxin transport during maize inflorescence development. Skirpan A, Culler AH, Gallavotti A, Jackson D, Cohen JD, McSteen P. Plant and Cell Physiology; 50(3):652-657.
Date published:
April 1, 2009
Featured in this article:
Paula McSteen.
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Identification of hydrolytically stable and selective P2Y₁ receptor agonists. Eliahu SE, Camden J, Lecka J, Weisman GA, Sévigny J, Gélinas S, Fischer B. European Journal of Medicinal Chemistry; 44(4):1525-1536.
Date published:
April 1, 2009
Featured in this article:
Gary Weisman.
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Delivery of recombinant follistatin lessens disease severity in a mouse model of spinal muscular atrophy. Rose FF Jr, Mattis VB, Rindt H, Lorson CL. Human Molecular Genetics; 18(6):997-1005.
Date published:
March 15, 2009
Featured in this article:
Christian Lorson.
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Analysis of gene expression in resynthesized Brassica napus allopolyploids using arabidopsis 70mer oligo microarrays. Gaeta RT, Yoo S-Y, Pires JC, Doerge RW, Chen ZJ, Osborn TC. PLoS ONE; 4(3):e4760.
Date published:
March 10, 2009
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The Pb-hyperaccumulator aquatic fern Salvinia minima Baker, responds to Pb2+ by increasing phytochelatins via changes in SmPCS expression and in phytochelatin synthase activity. Estrella-Gómez N, Mendoza-Cózatl D, Moreno-Sánchez R, González-Mendoza D, Zapata-Pérez O, Martínez-Hernández A, Santamaría JM. Aquatic Toxicology; 91(4):320-328.
Date published:
March 9, 2009
Featured in this article:
David Mendoza-Cózatl.
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Syndecan-4-Expressing Muscle Progenitor Cells in the SP Engraft as Satellite Cells during Muscle Regeneration. Tanaka KK, Hall JK, Troy AA, Cornelison DDW, Majka SM, Olwin BB. Cell Stem Cell; 4(3):217-225.
Date published:
March 6, 2009
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D Cornelison.
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Understanding and utilising mammalian venom via a platypus venom transcriptome. Whittington CM, Koh JMS, Warren WC, Pepenfuss AT, Torres AM, Kuchel PW, Belov K. Journal of Proteomics; 72(2):155-164.
Date published:
March 6, 2009
Featured in this article:
Wes Warren.
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The changing landscape of European and international regulation on embryonic stem cell research. Elstner A, Damaschun A, Kurtz A, Stacey G, Arán B, Veiga A, Borstlap J. Stem Cell Research; 2(2):101-107.
Date published:
March 1, 2009
Featured in this article:
Gary Stacey.
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Effect of leptin on mouse trophoblast giant cells. Schulz LC, Widmaier EP, Qiu J, Roberts RM. Biology of Reproduction; 80(3):415-424.
Date published:
March 1, 2009
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.
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Reactive Oxygen Signaling in Plants. Miller G, Coutu J, Shulaev V, Mittler R. Annual Plant Reviews: Intracellular Signaling in Plants; 33:189-201.
Date published:
February 9, 2009
Featured in this article:
Ron Mittler.
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Regulation of defense gene expression by Arabidopsis SRFR1. Sang HK, Soon IK, Bhattacharjee S, Gassmann W. Plant Signaling and Behavior; 4(2):149-150.
Date published:
February 1, 2009
Featured in this article:
Walter Gassmann.
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Developmental disaster1: A novel mutation causing defects during vegetative and inflorescence development in maize (Zea mays, Poaceae). Phillips KA, Skirpan AL, Kaplinsky NJ, McSteen P. American Journal of Botany; 96(2):420-430.
Date published:
February 1, 2009
Featured in this article:
Paula McSteen.
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Establishment of a protein reference map for soybean root hair cells. Brechenmacher L, Lee J, Sachdev S, Song Z, Nguyen THN, Joshi T, Oehrle N, Libault M, Mooney B, Xu D, Cooper B, Stacey G. Plant Physiology; 149(2):670-682.
Date published:
February 1, 2009
Featured in this article:
Trupti Joshi,
Dong Xu,
Gary Stacey.
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GS52 ecto-apyrase plays a critical role during soybean nodulation. Govindarajulu M, Kim S-Y, Libault M, Berg RH, Tanaka K, Stacey G, Taylor CG. Plant Physiology; 149(2):994-1004.
Date published:
February 1, 2009
Featured in this article:
Gary Stacey.
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ComPhy: Prokaryotic composite distance phylogenies inferred from whole-genome gene sets. Lin GN, Cai Z, Lin G, Chakraborty S, Xu D. BMC Bioinformatics; 10(SUPPL. 1):S5.
Date published:
January 30, 2009
Featured in this article:
Dong Xu.
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Induced pluripotent stem cells from a spinal muscular atrophy patient. Ebert AD, Yu J, Rose FF Jr, Mattis VB, Lorson CL, Thomson JA, Svendsen CN. Nature; 457(7227):277-280.
Date published:
January 15, 2009
Featured in this article:
Christian Lorson.
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SRFR1, a suppressor of effector-triggered immunity, encodes a conserved tetratricopeptide repeat protein with similarity to transcriptional repressors. Kwon SI, Kim SH, Bhattacharjee S, Noh J-J, Gassmann W. Plant Journal; 57(1):109-119.
Date published:
January 1, 2009
Featured in this article:
Walter Gassmann.
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Suppressor of sessile spikelets1 functions in the ramosa pathway controlling meristem determinacy in maize. Wu X, Skirpan A, McSteen P. Plant Physiology; 149(1):205-219.
Date published:
January 1, 2009
Featured in this article:
Paula McSteen.
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Hormonal regulation of branching in grasses. McSteen P. Plant Physiology; 149(1):46-55.
Date published:
January 1, 2009
Featured in this article:
Paula McSteen.
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Effector proteins of the bacterial pathogen Pseudomonas syringae alter the extracellular proteome of the host plant, Arabidopsis thaliana. Kaffamik FAR, Jones AME, Rathjen JP, Peck SC. Molecular and Cellular Proteomics; 8(1):145-156.
Date published:
January 1, 2009
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Scott Peck.
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Generation of Phaseolus vulgaris ESTs and investigation of their regulation upon Uromyces appendiculatus infection. Thibivilliers S, Joshi T, Campbell KB, Scheffler B, Xu D, Cooper B, Nguyen HT, Stacey G. BMC Plant Biology; 9:46.
Date published:
January 1, 2009
Featured in this article:
Trupti Joshi,
Dong Xu,
Gary Stacey.
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A linear programming framework for inferring gene regulatory networks by integrating heterogeneous data. Wang Y, Wang R-S, Joshi T, Xu D, Zhang X-S, Chen L, Xia Y. Handbook of Research on Computational Methodologies in Gene Regulatory Networks; 450-475.
Date published:
January 1, 2009
Featured in this article:
Trupti Joshi,
Dong Xu.
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Establishment of a soybean (Glycine max Merr. L) transposon-based mutagenesis repository. Mathieu M, Winters EK, Kong F, Wan J, Wang S, Eckert H, Luth D, Paz M, Donovan C, Zhang Z, Somers D, Wang K, Nguyen H, Shoemaker RC, Stacey G, Clemente T. Planta; 229(2):279-289.
Date published:
January 1, 2009
Featured in this article:
Gary Stacey.
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Flavones and flavonols play distinct critical roles during nodulation of Medicago truncatula by Sinorhizobium meliloti. Zhang J, Subramanian S, Stacey G, Yu O. Plant Journal; 57(1):171-183.
Date published:
January 1, 2009
Featured in this article:
Gary Stacey.
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Quantitative proteomic analysis of bean plants infected by a virulent and avirulent obligate rust fungus. Lee J, Feng J, Campbell KB, Scheffler BE, Garrett WM, Thibivilliers S, Stacey G, Naiman DQ, Tucker ML, Pastor-Corrales MA, Cooper B. Molecular and Cellular Proteomics; 8(1):19-31.
Date published:
January 1, 2009
Featured in this article:
Gary Stacey.
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Evolutionary genomics of LysM genes in land plants. Zhang X-C, Cannon SB, Stacey G. BMC Evolutionary Biology; 9(1):183.
Date published:
January 1, 2009
Featured in this article:
Gary Stacey.
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Genetic analysis of ethylene regulation of legume nodulation. Gresshoff PM, Lohar D, Chan P-K, Biswas B, Jiang Q, Reid D, Ferguson B, Stacey G. Plant Signaling and Behavior; 4(9):818-823.
Date published:
January 1, 2009
Featured in this article:
Gary Stacey.
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Transcript and proteomic analysis of developing white lupin (Lupinus albus L.) roots&z. Tian L. Tian L, Lei Z, Aziz N, Dai X, He J, Watson B, Zhao PX, Sumner LW, Dixon RA. BMC Plant Biology; 9:9.
Date published:
January 1, 2009
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Lloyd Sumner.
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LAP3, a novel plant protein required for pollen development, is essential for proper exine formation. Dobritsa AA, Nishikawa S-I, Preuss D, Urbanczyk-Wochniak E, Sumner LW, Hammond A, Carlson AL, Swanson RJ. Sexual Plant Reproduction; 22(3):167-177.
Date published:
January 1, 2009
Featured in this article:
Lloyd Sumner.
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A high-resolution two dimensional Gel- and Pro-Q DPS-based proteomics workflow for phosphoprotein identification and quantitative profiling. Agrawal GK, Thelen JJ. Methods in molecular biology (Clifton, N.J.); 527:3-19, ix.
Date published:
January 1, 2009
Featured in this article:
Jay Thelen.
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P³DB: A plant protein phosphorylation database. Gao J, Agrawal GK, Thelen JJ, Xu D. Nucleic Acids Research; 37(SUPPL. 1):D960-D962.
Date published:
January 1, 2009
Featured in this article:
Jay Thelen,
Dong Xu.
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Higher-order genome organization in platypus and chicken sperm and repositioning of sex chromosomes during mammalian evolution. Tsend-Ayush E, Dodge N, Mohr J, Casey A, Himmelbauer H, Kremitzki CL, Schatzkamer K, Graves T, Warren WC, Griützner F. Chromosoma; 118(1):53-69.
Date published:
January 1, 2009
Featured in this article:
Wes Warren.
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The enigma of the platypus genome. Warren WC, Grützner F. Australian Journal of Zoology; 57(4):157-165.
Date published:
January 1, 2009
Featured in this article:
Wes Warren.
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Mutual understanding between Traditional Chinese Medicine and systems biology: gaps, challenges and opportunities. Xu D. International Journal of Functional Informatics and Personalised Medicine; 2(3):248-260.
Date published:
January 1, 2009
Featured in this article:
Dong Xu.
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Computational methods for protein sequence comparison and search. Xu D. Current Protocols in Protein Science; SUPPL. 56:2.1.1-2.1.27.
Date published:
January 1, 2009
Featured in this article:
Dong Xu.
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Sequence-based prediction of protein folding rates using contacts, secondary structures and support vector machines. Lin GN, Wang Z, Xu D, Cheng J. 2009 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2009; 3-8.
Date published:
January 1, 2009
Featured in this article:
Dong Xu.
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2008
Three-Dimensional Analysis of Budding Sites and Released Virus Suggests a Revised Model for HIV-1 Morphogenesis. Carlson L-A, Briggs JAG, Glass B, Riches JD, Simon MN, Johnson MC, Müller B, Grünewald K, Kräusslich H-G. Cell Host and Microbe; 4(6):592-599.
Date published:
December 11, 2008
Featured in this article:
Marc Johnson.
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Reduction of IgE binding and nonpromotion of Aspergillus flavus fungal growth by simultaneously silencing Ara h 2 and Ara h 6 in peanut. Chu Y, Faustinelli P, Ramos ML, Hajduch M, Stevenson S, Thelen JJ, Maleki SJ, Cheng H, Ozias-Akins P. Journal of Agricultural and Food Chemistry; 56(23):11225-11233.
Date published:
December 10, 2008
Featured in this article:
Jay Thelen.
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Ascorbate peroxidase 1 plays a key role in the response of Arabidopsis thaliana to stress combination. Koussevitzky S, Suzuki N, Huntington S, Armijo L, Sha W, Cortes D, Shulaev V, Mittler R. Journal of Biological Chemistry; 283(49):34197-34203.
Date published:
December 5, 2008
Featured in this article:
Ron Mittler.
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Novel bimodular DNA aptamers with guanosine quadruplexes inhibit phylogenetically diverse HIV-1 reverse transcriptases. Michalowski D, Chitima-Matsiga R, Held DM, Burke DH. Nucleic Acids Research; 36(22):7124-7135.
Date published:
December 1, 2008
Featured in this article:
Donald Burke-Agüero.
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Hormonal control of grass inflorescence development. Barazesh S, McSteen P. Trends in Plant Science; 13(12):656-662.
Date published:
December 1, 2008
Featured in this article:
Paula McSteen.
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Virus infection improves drought tolerance. Xu P, Chen F, Mannas JP, Feldman T, Sumner LW, Roossinck MJ. New Phytologist; 180(4):911-921.
Date published:
December 1, 2008
Featured in this article:
Lloyd Sumner.
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Exploring core/periphery structures in protein interaction networks provides structure-property relation insights. Grindinger T, Luo F, Wan X-F, Scheuermann RH. Proceedings - IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2008; 179-186.
Date published:
November 3, 2008
Featured in this article:
XiuFeng “Henry” Wan.
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Functional annotation from meta-analysis of microarray datasets. Srivastava CP, Qiu J, Xu D. Proceedings - IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2008; 367-371.
Date published:
November 3, 2008
Featured in this article:
Dong Xu.
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Proinflammatory cytokines tumor necrosis factor-α and interferon-γ alter tight junction structure and function in the rat parotid gland Par-C10 cell line. Baker OJ, Camden JM, Redman RS, Jones JE, Seye CI, Erb L, Weisman GA. American Journal of Physiology - Cell Physiology; 295(5):C1191-C1201.
Date published:
November 1, 2008
Featured in this article:
Olga Baker,
Gary Weisman.
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A negatively acting bifunctional RNA increases survival motor neuron both in vitro and in vivo. Dickson A, Osman E, Lorson CL. Human Gene Therapy; 19(11):1307-1315.
Date published:
November 1, 2008
Featured in this article:
Christian Lorson.
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Gene discovery and comparative analysis of X-degenerate genes from the domestic cat Y chromosome. Pearks Wilkerson AJ, Raudsepp T, Graves T, Albracht D, Warren W, Chowdhary BP, Skow LC, Murphy WJ. Genomics; 92(5):329-338.
Date published:
November 1, 2008
Featured in this article:
Wes Warren.
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Detection of human survival motor neuron (SMN) protein in mice containing the SMN2 transgene: Applicability to preclinical therapy development for spinal muscular atrophy. Mattis VB, Butchbach MER, Lorson CL. Journal of Neuroscience Methods; 175(1):36-43.
Date published:
October 30, 2008
Featured in this article:
Christian Lorson.
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Development of a single vector system that enhances Trans-splicing of SMN2 transcripts. Coady TH, Baughan TD, Shababi M, Passini MA, Lorson CL. PLoS ONE; 3(10):e3468.
Date published:
October 22, 2008
Featured in this article:
Christian Lorson.
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Evolution of highly pathogenic H5N1 avian influenza viruses in Vietnam between 2001 and 2007. Wan X-F, Nguyen T, Davis CT, Smith CB, Zhao Z-M, Carrel M, Inui K, Do HT, Mai DT, Jadhao S, Balish A, Shu B, Luo F, Emch M, Matsuoka Y, Lindstrom SE, Cox NJ, Nguyen CV, Klimov A, Donis RO. PLoS ONE; 3(10):e3462.
Date published:
October 21, 2008
Featured in this article:
XiuFeng “Henry” Wan.
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Context matters: In vivo and in vitro influences on muscle satellite cell activity. Cornelison DDW. Journal of Cellular Biochemistry; 105(3):663-669.
Date published:
October 15, 2008
Featured in this article:
D Cornelison.
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Identification and characterisation of a nuclear localisation signal in the SMN associated protein, Gemin4. Lorson MA, Dickson AM, Shaw DJ, Todd AG, Young EC, Morse R, Wolstencroft C, Lorson CL, Young PJ. Biochemical and Biophysical Research Communications; 375(1):33-37.
Date published:
October 10, 2008
Featured in this article:
Monique Lorson,
Christian Lorson.
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The Wallerian degeneration slow (Wlds) gene does not attenuate disease in a mouse model of spinal muscular atrophy. Rose FF Jr, Meehan PW, Coady TH, Garcia VB, Garcia ML, Lorson CL. Biochemical and Biophysical Research Communications; 375(1):119-123.
Date published:
October 10, 2008
Featured in this article:
Christian Lorson.
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Rapid chromosome evolution in recently formed polyploids in Tragopogon (Asteraceae). Lim KY, Soltis DE, Soltis PS, Tate J, Matyasek R, Srubarova H, Kovarik A, Pires JC, Xiong Z, Leitch AR. PLoS ONE; 3(10):e3353.
Date published:
October 8, 2008
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.
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Identification of oxygen-sensitive transcriptional programs in human embryonic stem cells. Westfall SD, Sachdev S, Das P, Hearne LB, Hannink M, Roberts RM, Ezashi T. Stem Cells and Development; 17(5):869-881.
Date published:
October 1, 2008
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,
.
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Chitin signaling and plant disease resistance. Wan J, Zhang X-C, Stacey G. Plant Signaling and Behavior; 3(10):831-833.
Date published:
October 1, 2008
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Gary Stacey.
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Whole-genome transcriptional profiling of Bradyrhizobium japonicum during chemoautotrophic growth. Franck WL, Chang W-S, Qiu J, Sugawara M, Sadowsky MJ, Smith SA, Stacey G. Journal of Bacteriology; 190(20):6697-6705.
Date published:
October 1, 2008
Featured in this article:
Gary Stacey.
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A commentary on domestic animals as dual-purpose models that benefit agricultural and biomedical research. Ireland JJ, Roberts RM, Palmer GH, Bauman DE, Bazer FW. Journal of Animal Science; 86(10):2797-2805.
Date published:
October 1, 2008
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.
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sparse inflorescence1 encodes a monocot-specific YUCCA-like gene required for vegetative and reproductive development in maize. Gallavotti A, Barazesh S, Malcomber S, Hall D, Jackson D, Schmidt RJ, McSteen P. Proceedings of the National Academy of Sciences of the United States of America; 105(39):15196-15201.
Date published:
September 30, 2008
Featured in this article:
Paula McSteen.
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Predicting Functional Modules Using Microarray and Protein Interaction Data. Chen Y, Xu D. Analysis of Microarray Data: A Network-Based Approach; 307-329.
Date published:
September 16, 2008
Featured in this article:
Dong Xu.
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Root-microbe communication through protein secretion. De-la-Peña C, Lei Z, Watson BS, Sumner LW, Vivanco JM. Journal of Biological Chemistry; 283(37):25247-25255.
Date published:
September 12, 2008
Featured in this article:
Lloyd Sumner.
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A SMNΔ7 read-through product confers functionality to the SMNΔ7 protein. Mattis VB, Bowerman M, Kothary R, Lorson CL. Neuroscience Letters; 442(1):54-58.
Date published:
September 5, 2008
Featured in this article:
Christian Lorson.
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Genetic and physical interaction suggest that BARREN STALK1 is a target of BARREN INFLORESCENCE2 in maize inflorescence development. Skirpan A, Wu X, McSteen P. Plant Journal; 55(5):787-797.
Date published:
September 1, 2008
Featured in this article:
Paula McSteen.
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Enhanced tolerance to oxidative stress in transgenic Arabidopsis plants expressing proteins of unknown function. Luhua S, Ciftci-Yilmaz S, Harper J, Cushman J, Mittler R. Plant Physiology; 148(1):280-292.
Date published:
September 1, 2008
Featured in this article:
Ron Mittler.
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A simple and rapid technique for detecting protein phosphorylation using one-dimensional isoelectric focusing gels and immunoblot analysis. Anderson JC, Peck SC. Plant Journal; 55(5):881-885.
Date published:
September 1, 2008
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Scott Peck.
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Identification of novel proteins and phosphorylation sites in a tonoplast enriched membrane fraction of Arabidopsis thaliana. Whiteman S-A, Serazetdinova L, Jones AME, Sanders D, Rathjen J, Peck SC, Maathuis FJM. Proteomics; 8(17):3536-3547.
Date published:
September 1, 2008
Featured in this article:
Scott Peck.
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In-depth investigation of the soybean seed-filling proteome and comparison with a parallel study of rapeseed. Agrawal GK, Hajduch M, Graham K, Thelen JJ. Plant Physiology; 148(1):504-518.
Date published:
September 1, 2008
Featured in this article:
Jay Thelen.
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Genome analysis of the platypus reveals unique signatures of evolution (Nature (2008) 453, (175-183)). Warren WC, Hillier LW, Marshall Graves JA, Birney E, Ponting CP, Grützner F, Belov K, Miller W, Clarke L, Chinwalla AT, Yang S-P, Heger A, Locke DP, Miethke P, Waters PD, Veyrunes F, Fulton L, Fulton B, Graves T, Wallis J, Puente XS, López-Otín C, Ordó̃ez GR, Eichler EE, Chen L, Cheng Z, Deakin JE, Alsop A, Thompson K, Kirby P, Papenfuss AT, Wakefield MJ, Olender T, Lancet D, Huttley GA, Smit AFA, Pask A, Temple-Smith P, Batzer MA, Walker JA, Konkel MK, Harris RS, Whittington CM, Wong ESW, Gemmell NJ, Buschiazzo E, Vargas Jentzsch IM, Merkel A, Schmitz J, Zemann A, Churakov G, Kriegs JO, Brosius J, Murchison EP, Sachidanandam R, Smith C, Hannon GJ, Tsend-Ayush E, McMillan D, Attenborough R, Rens W, Ferguson-Smith M, Lefèvre CM, Sharp JA, Nicholas KR, Ray DA, Kube M, Reinhardt R, Pringle TH, Taylor J, Jones RC, Nixon B, Dacheux J-L, Niwa H, Sekita Y, Huang X, Stark A, Kheradpour P, Kellis M, Flicek P, Chen Y, Webber C, Hardison R, Nelson J, Hallsworth-Pepin K, Delehaunty K, Markovic C, Minx P, Feng Y, Kremitzki C, Mitreva M, Glasscock J, Wylie T, Wohldmann P, Thiru P, Nhan MN, Pohl CS, Smith SM, Hou S, Nefedov M, De Jong PJ, Renfree MB, Mardis ER, Wilson RK. Nature; 455(7210):256.
Date published:
September 1, 2008
Featured in this article:
Wes Warren.
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Evolutionary toggling of the MAPT 17q21.31 inversion region. Zody MC, Jiang Z, Fung H-C, Antonacci F, Hillier LW, Cardone MF, Graves TA, Kidd JM, Cheng Z, Abouelleil A, Chen L, Wallis J, Glasscock J, Wilson RK, Reily AD, Duckworth J, Ventura M, Hardy J, Warren WC, Eichler EE. Nature Genetics; 40(9):1076-1083.
Date published:
September 1, 2008
Featured in this article:
Wes Warren.
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PRIMEGENS-v2: Genome-wide primer design for analyzing DNA methylation patterns of CpG islands. Srivastava CP, Guo J, Shi H, Xu D. Bioinformatics; 24(17):1837-1842.
Date published:
September 1, 2008
Featured in this article:
Dong Xu.
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Transcriptome analysis reveals response regulator SO2426-mediated gene expression in Shewanella oneidensis MR-1 under chromate challenge. Chourey K, Wei W, Wan X-F, Thompson DK. BMC Genomics; 9:395.
Date published:
August 21, 2008
Featured in this article:
XiuFeng “Henry” Wan.
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Generation and validation of a Shewanella oneidensis MR-1 clone set for protein expression and phage display. Gao H, Pattison D, Yan T, Klingeman DM, Wang X, Petrosino J, Hemphill L, Wan X, Leaphart AB, Weinstock GM, Palzkill T, Zhou J. PLoS ONE; 3(8):e2983.
Date published:
August 20, 2008
Featured in this article:
XiuFeng “Henry” Wan.
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A link between SIN1 (MAPKAP1) and poly(rC) binding protein 2 (PCBP2) in counteracting environmental stress. Ghosh D, Srivastava GP, Xu D, Schulz LC, Roberts RM. Proceedings of the National Academy of Sciences of the United States of America; 105(33):11673-11678.
Date published:
August 19, 2008
Featured in this article:
Dong Xu,
.
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Wanted: Unique names for unique atom positions. PDB-wide analysis of diastereotopic atom names of small molecules containing diphosphate. Bottoms CA, Xu D. BMC Bioinformatics; 9(SUPPL. 9):S16.
Date published:
August 12, 2008
Featured in this article:
Dong Xu.
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Identification and characterization of the porcine (Sus scrofa) survival motor neuron (SMN1) gene: An animal model for therapeutic studies. Lorson MA, Spate LD, Prather RS, Lorson CL. Developmental Dynamics; 237(8):2268-2278.
Date published:
August 1, 2008
Featured in this article:
Monique Lorson,
Christian Lorson.
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Purification and proteomic characterization of plastids from Brassica napus developing embryos. Jain R, Katavic V, Agrawal GK, Guzov VM, Thelen JJ. Proteomics; 8(16):3397-3405.
Date published:
August 1, 2008
Featured in this article:
Jay Thelen.
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Platypus globin genes and flanking loci suggest a new insertional model for beta-globin evolution in birds and mammals. Patel VS, Cooper SJB, Deakin JE, Fulton B, Graves T, Warren WC, Wilson RK, Graves JAM. BMC Biology; 6:34.
Date published:
August 1, 2008
Featured in this article:
Wes Warren.
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Bacterial Effectors Target the Common Signaling Partner BAK1 to Disrupt Multiple MAMP Receptor-Signaling Complexes and Impede Plant Immunity. Shan L, He P, Li J, Heese A, Peck SC, Nürnberger T, Martin GB, Sheen J. Cell Host and Microbe; 4(1):17-27.
Date published:
July 17, 2008
Featured in this article:
Scott Peck.
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Mutations in the spacer peptide and adjoining sequences in rous sarcoma virus gag lead to tubular budding. Keller PW, Johnson MC, Vogt VM. Journal of Virology; 82(14):6788-6797.
Date published:
July 1, 2008
Featured in this article:
Marc Johnson.
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Reactive oxygen signaling and abiotic stress. Miller G, Shulaev V, Mittler R. Physiologia Plantarum; 133(3):481-489.
Date published:
July 1, 2008
Featured in this article:
Ron Mittler.
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Unraveling the tapestry of networks involving reactive oxygen species in plants. Van Breusegem F, Bailey-Serres J, Mittler R. Plant Physiology; 147(3):978-984.
Date published:
July 1, 2008
Featured in this article:
Ron Mittler.
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A lectin receptor-like kinase is required for pollen development in Arabidopsis. Wan J, Patel A, Mathieu M, Kim S-Y, Xu D, Stacey G. Plant Molecular Biology; 67(5):469-482.
Date published:
July 1, 2008
Featured in this article:
Dong Xu,
Gary Stacey.
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The role of homeobox protein distal-less 3 and its interaction with ETS2 in regulating bovine interferon-tau gene expression-synergistic transcriptional activation with ETS2. Ezashi T, Das P, Gupta R, Walker A, Roberts RM. Biology of Reproduction; 79(1):115-124.
Date published:
July 1, 2008
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.
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A critical assessment of Mus musculus gene function prediction using integrated genomic evidence. Peña-Castillo L, Tasan M, Myers CL, Lee H, Joshi T, Zhang C, Guan Y, Leone M, Pagnani A, Kim WK, Krumpelman C, Tian W, Obozinski G, Qi Y, Mostafavi S, Lin GN, Berriz GF, Gibbons FD, Lanckriet G, Qiu J, Grant C, Barutcuoglu Z, Hill DP, Warde-Farley D, Grouios C, Ray D, Blake JA, Deng M, Jordan MI, Noble WS, Morris Q, Klein-Seetharaman J, Bar-Joseph Z, Chen T, Sun F, Troyanskaya OG, Marcotte EM, Xu D, Highes TR, Roth FP. Genome Biology; 9(SUPPL. 1):S2.
Date published:
June 27, 2008
Featured in this article:
Trupti Joshi,
Dong Xu.
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Identification of a new motif required for the 3′-5′ exonuclease activity of Escherichia coli DNA polymerase I (Klenow fragment): The RRRY motif is necessary for the binding of single-stranded DNA substrate and the template strand of the mismatched duplex. Kukreti P, Singh K, Ketkar A, Modak MJ. Journal of Biological Chemistry; 283(26):17979-17990.
Date published:
June 27, 2008
Featured in this article:
Kamlendra Singh.
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A renaissance of cytogenetics: Studies in polyploidy and chromosomal evolution. Pires JC, Hertweck KL. Annals of the Missouri Botanical Garden; 95(2):275-281.
Date published:
June 18, 2008
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Identifying a few foot-and-mouth disease virus signature nucleotide strings for computational genotyping. Lin G, Cai Z, Wu J, Wan X-F, Xu L, Goebel R. BMC Bioinformatics; 9:279.
Date published:
June 13, 2008
Featured in this article:
XiuFeng “Henry” Wan.
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Nutritional skewing of conceptus sex in sheep: Effects of a maternal diet enriched in rumen-protected polyunsaturated fatty acids (PUFA). Green MP, Spate LD, Parks TE, Kimura K, Murphy CN, Williams JE, Kerley MS, Green JA, Keisler DH, Roberts RM. Reproductive Biology and Endocrinology; 6:21.
Date published:
June 9, 2008
Featured in this article:
.
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Corrigendum to “P2Y2 nucleotide receptor activation up-regulates vascular cell adhesion molecular-1 expression and enhances lymphocyte adherence to a human submandibular gland cell line” [Mol. Immunol. 45 (2008) 65-75] (DOI:10.1016/j.molimm.2007.05.009). Baker OJ, Camden JM, Rome DE, Seye CI, Weisman GA. Molecular Immunology; 45(11):3319.
Date published:
June 1, 2008
Featured in this article:
Olga Baker,
Gary Weisman.
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Defensins and the convergent evolution of platypus and reptile venom genes. Whittington CM, Papenfuss AT, Bansal P, Torres AM, Wong ESW, Deakin JE, Graves T, Alsop A, Schatzkamer K, Kremitzki C, Ponting CP, Temple-Smith P, Warren WC, Kuchel PW, Belov K. Genome Research; 18(6):986-994.
Date published:
June 1, 2008
Featured in this article:
Wes Warren.
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Bird-like sex chromosomes of platypus imply recent origin of mammal sex chromosomes. Veyrunes F, Waters PD, Miethke P, Rens W, McMillan D, Alsop AE, Grützner F, Deakin JE, Whittington CM, Schatzkamer K, Kremitzki CL, Graves T, Ferguson-Smith MA, Warren W, Marshal Graves JA. Genome Research; 18(6):965-973.
Date published:
June 1, 2008
Featured in this article:
Wes Warren.
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Origin of INSL3-mediated testicular descent in therian mammals. Park J-I, Semyonov J, Chia LC, Yi W, Warren W, Hsu SYT. Genome Research; 18(6): 974-985.
Date published:
June 1, 2008
Featured in this article:
Wes Warren.
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A new clustering-based method for protein structure selection. Wang Q, Shang Y, Xu D. Proceedings of the International Joint Conference on Neural Networks; 2891-2898.
Date published:
June 1, 2008
Featured in this article:
Dong Xu.
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Loss of genes implicated in gastric function during platypus evolution. Ordoñez GR, Hillier LW, Warren WC, Grützner F, López-Otín C, Puente XS. Genome Biology; 9(5):R81.
Date published:
May 15, 2008
Featured in this article:
Wes Warren.
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Genome analysis of the platypus reveals unique signatures of evolution. Warren WC, Hillier LW, Marshall Graves JA, Birney E, Ponting CP, Grützner F, Belov K, Miller W, Clarke L, Chinwalla AT, Yang S-P, Heger A, Locke DP, Miethke P, Waters PD, Veyrunes F, Fulton L, Fulton B, Graves T, Wallis J, Puente XS, López-Otín C, Ordóñez GR, Eichler EE, Chen L, Cheng Z, Deakin JE, Alsop A, Thompson K, Kirby P, Papenfuss AT, Wakefield MJ, Olender T, Lancet D, Huttley GA, Smit AFA, Pask A, Temple-Smith P, Batzer MA, Walker JA, Konkel MK, Harris RS, Whittington CM, Wong ESW, Gemmell NJ, Buschiazzo E, Vargas Jentzsch IM, Merkel A, Schmitz J, Zemann A, Churakov G, Ole Kriegs J, Brosius J, Murchison EP, Sachidanandam R, Smith C, Hannon GJ, Tsend-Ayush E, McMillan D, Attenborough R, Rens W, Ferguson-Smith M, Lefèvre CM, Sharp JA, Nicholas KR, Ray DA, Kube M, Reinhardt R, Pringle TH, Taylor J, Jones RC, Nixon B, Dacheux J-L, Niwa H, Sekita Y, Huang X, Stark A, Kheradpour P, Kellis M, Flicek P, Chen Y, Webber C, Hardison R, Nelson J, Hallsworth-Pepin K, Delehaunty K, Markovic C, Minx P, Feng Y, Kremitzki C, Mitreva M, Glasscock J, Wylie T, Wohldmann P, Thiru P, Nhan MN, Pohl CS, Smith SM, Hou S, Renfree MB, Mardis ER, Wilson RK. Nature; 453(7192):175-183.
Date published:
May 8, 2008
Featured in this article:
Wes Warren.
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Fiber type-specific nitric oxide protects oxidative myofibers against cachectic stimuli. Yu Z, Li P, Zhang M, Hannink M, Stamler JS, Yan Z. PLoS ONE; 3(5):e2086.
Date published:
May 7, 2008
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.
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PGAM5 tethers a ternary complex containing Keap1 and Nrf2 to mitochondria. Lo S-C, Hannink M. Experimental Cell Research; 314(8):1789-1803.
Date published:
May 1, 2008
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.
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Barren inflorescence1 functions in organogenesis during vegetative and inflorescence development in maize. Barazesh S, McSteen P. Genetics; 179(1):389-401.
Date published:
May 1, 2008
Featured in this article:
Paula McSteen.
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Annotating genes of known and unknown function by large-scale coexpression analysis. Horan K, Jang C, Bailey-Serres J, Mittler R, Shelton C, Harper JF, Zhu J-K, Cushman JC, Gollery M, Girke T. Plant Physiology; 147(1):41-57.
Date published:
May 1, 2008
Featured in this article:
Ron Mittler.
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Transcription profiling of soybean nodulation by Bradyrhizobium japonicum. Brechenmacher L, Kim M-Y, Benitez M, Li M, Joshi T, Calla B, Mei PL, Libault M, Vodkin LO, Xu D, Lee S-H, Clough SJ, Stacey G. Molecular Plant-Microbe Interactions; 21(5):631-645.
Date published:
May 1, 2008
Featured in this article:
Trupti Joshi,
Dong Xu,
Gary Stacey.
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An Arabidopsis protein phosphorylated in response to microbial elicitation, AtPHOS32, is a substrate of MAP kinases 3 and 6. Merkouropoulos G, Andreasson E, Hess D, Boller T, Peck SC. Journal of Biological Chemistry; 283(16):10493-10499.
Date published:
April 18, 2008
Featured in this article:
Scott Peck.
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The Interferon-Induced Protein BST-2 Restricts HIV-1 Release and Is Downregulated from the Cell Surface by the Viral Vpu Protein. Van Damme N, Goff D, Katsura C, Jorgenson RL, Mitchell R, Johnson MC, Stephens EB, Guatelli J. Cell Host and Microbe; 3(4):245-252.
Date published:
April 17, 2008
Featured in this article:
Marc Johnson.
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Neural cell adhesion molecule (NCAM) marks adult myogenic cells committed to differentiation. Capkovic KL, Stevenson S, Johnson MC, Thelen JJ, Cornelison DDW. Experimental Cell Research; 314(7):1553-1564.
Date published:
April 15, 2008
Featured in this article:
Marc Johnson,
Jay Thelen,
D Cornelison.
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Plant Hormones and Signaling: Common Themes and New Developments. McSteen P, Zhao Y. Developmental Cell; 14(4):467-473.
Date published:
April 15, 2008
Featured in this article:
Paula McSteen.
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The transcriptional co-activator MBF1c is a key regulator of thermotolerance in Arabidopsis thaliana. Suzuki N, Bajad S, Shuman J, Shulaev V, Mittler R. Journal of Biological Chemistry; 283(14):9269-9275.
Date published:
April 4, 2008
Featured in this article:
Ron Mittler.
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Identification of high levels of phytochelatins, glutathione and cadmium in the phloem sap of Brassica napus. A role for thiol-peptides in the long-distance transport of cadmium and the effect of cadmium on iron translocation. Mendoza-Cózatl DG, Butko E, Springer F, Torpey JW, Komives EA, Kehr J, Schroeder JI. Plant Journal; 54(2):249-259.
Date published:
April 1, 2008
Featured in this article:
David Mendoza-Cózatl.
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Charting plant interactomes: possibilities and challenges. Morsy M, Gouthu S, Orchard S, Thorneycroft D, Harper JF, Mittler R, Cushman JC. Trends in Plant Science; 13(4):183-191.
Date published:
April 1, 2008
Featured in this article:
Ron Mittler.
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The zinc finger network of plants. Ciftci-Yilmaz S, Mittler R. Cellular and Molecular Life Sciences; 65(7-8):1150-1160.
Date published:
April 1, 2008
Featured in this article:
Ron Mittler.
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Microsatellite discovery from BAC end sequences and genetic mapping to anchor the soybean physical and genetic maps. Shoemaker RC, Grant D, Olson T, Warren WC, Wing R, Yu Y, Kim H, Cregan P, Joseph B, Futrell-Griggs M, Nelson W, Davito J, Walker J, Wallis J, Kremitski C, Scheer D, Clifton SW, Graves T, Nguyen H, Wu X, Luo M, Dvorak J, Nelson R, Cannon S, Tomkins J, Schmutz J, Stacey G, Jackson S. Genome; 51(4):294-302.
Date published:
April 1, 2008
Featured in this article:
Wes Warren,
Gary Stacey.
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Interferons and the maternal-conceptus dialog in mammals. Roberts RM, Chen Y, Ezashi T, Walker AM. Seminars in Cell and Developmental Biology; 19(2):170-177.
Date published:
April 1, 2008
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.
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Molecular imaging of bcl-2 expression in small lymphocytic lymphoma using 111In-labeled PNA-peptide conjugates. Jia F, Figueroa SD, Gallazzi F, Balaji BS, Hannink M, Lever SZ, Hoffman TJ, Lewis MR. Journal of Nuclear Medicine; 49(3):430-438.
Date published:
March 1, 2008
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Current and emerging mass-spectrometry technologies for metabolomics. Bedair M, Sumner LW. TrAC - Trends in Analytical Chemistry; 27(3):238-250.
Date published:
March 1, 2008
Featured in this article:
Lloyd Sumner.
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Sub-lethal levels of electric current elicit the biosynthesis of plant secondary metabolites. Kaimoyo E, Farag MA, Sumner LW, Wasmann C, Cuello JL, VanEtten H. Biotechnology Progress; 24(2):377-384.
Date published:
March 1, 2008
Featured in this article:
Lloyd Sumner.
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SNP discovery and allele frequency estimation by deep sequencing of reduced representation libraries. Van Tassell CP, Smith TPL, Matukumalli LK, Taylor JF, Schnabel RD, Lawley CT, Haudenschild CD, Moore SS, Warren WC, Sonstehard TS. Nature Methods; 5(3):247-252.
Date published:
March 1, 2008
Featured in this article:
Wes Warren.
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Binding of the P2Y₂ nucleotide receptor to filamin A regulates migration of vascular smooth muscle cells. Yu N, Erb L, Shivaji R, Weisman GA, Seye CI. Circulation Research; 102(5):581-588.
Date published:
March 1, 2008
Featured in this article:
Gary Weisman.
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Projecting gene expression trajectories through inducing differential equations from microarray time series experiments. Kramer R, Xu D. Journal of Signal Processing Systems; 50(3):321-329.
Date published:
March 1, 2008
Featured in this article:
Dong Xu.
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Human Embryonic Stem Cells as Models for Trophoblast Differentiation. Schulz LC, Ezashi T, Das P, Westfall SD, Livingston KA, Roberts RM. Placenta; 29(SUPPL.):10-16.
Date published:
March 1, 2008
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.
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The arabidopsis AtOPT3 protein functions in metal homeostasis and movement of iron to developing seeds. Stacey MG, Patel A, McClain WE, Mathieu M, Remley M, Rogers EE, Gassmann W, Blevins DG, Stacey G. Plant Physiology; 146(2):589-601.
Date published:
February 1, 2008
Featured in this article:
Minviluz (Bing) Stacey,
Walter Gassmann,
Gary Stacey.
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Metabolomics for plant stress response. Shulaev V, Cortes D, Miller G, Mittler R. Physiologia Plantarum; 132(2):199-208.
Date published:
February 1, 2008
Featured in this article:
Ron Mittler.
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A LysM receptor-like kinase plays a critical role in chitin signaling and fungal resistance in Arabidopsis. Wan J, Zhang X-C, Neece D, Ramonell KM, Clough S, Kim S-Y, Stacey MG, Stacey G. Plant Cell; 20(2):471-481.
Date published:
February 1, 2008
Featured in this article:
Minviluz (Bing) Stacey,
Gary Stacey.
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Altered profile of secondary metabolites in the root exudates of arabidopsis ATP-binding cassette transporter mutants. Badri DV, Loyola-Vargas VM, Broeckling CD, De-la-Peña C, Jasinski M, Santelia D, Martinoia E, Sumner LW, Banta LM, Stermitz F, Vivanco JM. Plant Physiology; 146(2):762-771.
Date published:
February 1, 2008
Featured in this article:
Lloyd Sumner.
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Metabolomics reveals novel pathways and differential mechanistic and elicitor-specific responses in phenylpropanoid and isoflavonoid biosynthesis in Medicago truncatula cell cultures. Farag MA, Huhman DV, Dixon RA, Sumner LW. Plant Physiology; 146(2):387-402.
Date published:
February 1, 2008
Featured in this article:
Lloyd Sumner.
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Biochemical approaches for discovering protein-protein interactions. Miernyk JA, Thelen JJ. Plant Journal; 53(4):597-609.
Date published:
February 1, 2008
Featured in this article:
Jay Thelen.
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Effects of diets enriched in omega-3 and omega-6 polyunsaturated fatty acids on offspring sex-ratio and maternal behavior in mice. Fountain ED, Mao J, Whyte JJ, Mueller KE, Ellersieck MR, Will MJ, Roberts RM, MacDonald R, Rosenfeld CS. Biology of Reproduction; 78(2):211-217.
Date published:
February 1, 2008
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.
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Combinatorial roles of protein kinase A, Ets2, and 3′,5′- cyclic-adenosine monophosphate response element-binding protein-binding protein/p300 in the transcriptional control of interferon-τ expression in a trophoblast cell line. Das P, Ezashi T, Gupta R, Roberts RM. Molecular Endocrinology; 22(2):331-343.
Date published:
February 1, 2008
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.
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Genetic marker anchoring by six-dimensional pools for development of a soybean physical map. Wu X, Zhong G, Findley SD, Cregan P, Stacey G, Nguyen HT. BMC Genomics; 9:28.
Date published:
January 22, 2008
Featured in this article:
Gary Stacey.
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Thiol peptides induction in the seagrass Thalassia testudinum (Banks ex König) in response to cadmium exposure. Alvarez-Legorreta T, Mendoza-Cozatl D, Moreno-Sanchez R, Gold-Bouchot G. Aquatic Toxicology; 86(1):12-19.
Date published:
January 20, 2008
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David Mendoza-Cózatl.
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Proteomics of Legume Plants. Nagaraj S, Lei Z, Watson B, Sumner LW. Plant Proteomics: Technologies, Strategies, and Applications; 179-189.
Date published:
January 7, 2008
Featured in this article:
Lloyd Sumner.
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P2Y2 nucleotide receptor activation up-regulates vascular cell adhesion molecular-1 expression and enhances lymphocyte adherence to a human submandibular gland cell line. Baker OJ, Camden JM, Rome DE, Seye CI, Weisman GA. Molecular Immunology; 45(1):65-75.
Date published:
January 1, 2008
Featured in this article:
Olga Baker,
Gary Weisman.
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Alternative splicing in plant defense. Gassmann W. Current Topics in Microbiology and Immunology; 326:219-233.
Date published:
January 1, 2008
Featured in this article:
Walter Gassmann.
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Protein phosphatase 1 binds to the RNA recognition motif of several splicing factors and regulates alternative pre-mRNA processing. Novoyatleva T, Heinrich B, Tang Y, Benderska N, Butchbach MER, Lorson CL, Lorson MA, Ben-Dov C, Fehlbaum P, Bracco L, Burghes AHM, Bollen M, Stamm S. Human Molecular Genetics; 17(1):52-70.
Date published:
January 1, 2008
Featured in this article:
Christian Lorson,
Monique Lorson.
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Induction of full-length survival motor neuron by polyphenol botanical compounds. Sakla MS, Lorson CL. Human Genetics; 122(6):635-643.
Date published:
January 1, 2008
Featured in this article:
Christian Lorson.
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An integrated probabilistic approach for gene function prediction using multiple sources of high-throughput data. Zhang C, Joshi T, Lin GN, Xu D. International Journal of Computational Biology and Drug Design; 1(3):254-274.
Date published:
January 1, 2008
Featured in this article:
Trupti Joshi,
Dong Xu.
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GeneFAS: A tool for prediction of gene function using multiple sources of data. Joshi T, Zhang C, Lin GN, Song Z, Xu D. Methods in Molecular Biology; 439:369-386.
Date published:
January 1, 2008
Featured in this article:
Trupti Joshi,
Dong Xu.
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Development of a European Human Embryonic Stem Cell Registry. Borstlap J, Kurtz A, Stacey G, Elstner A, Damaschun A, Arán B, Gerlach JC, Izpisúa JC, Veiga A. Regenerative Medicine; 3(6):945-951.
Date published:
January 1, 2008
Featured in this article:
Gary Stacey.
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Transcriptional analysis of a major capsid protein gene from Spodoptera exigua ascovirus 5a. Salem TZ, Turney CM, Wang L, Xue J, Wan X-F, Cheng X-W. Archives of Virology; 153(1):149-162.
Date published:
January 1, 2008
Featured in this article:
XiuFeng “Henry” Wan.
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Ubiquitous reassortments in influenza a viruses. Wan X-F, Ozden M, Lin G. Journal of Bioinformatics and Computational Biology; 6(5):981-999.
Date published:
January 1, 2008
Featured in this article:
XiuFeng “Henry” Wan.
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Genotypic diversity of H5N1 highly pathogenic avian influenza viruses. Zhao Z-M, Shortridge KF, Garcia M, Guan Y, Wan X-F. Journal of General Virology; 89(9):2182-2193.
Date published:
January 1, 2008
Featured in this article:
XiuFeng “Henry” Wan.
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Combining sequence and structural profiles for protein solvent accessibility prediction. Bondugula R, Xu D. Computational systems bioinformatics / Life Sciences Society. Computational Systems Bioinformatics Conference; 7:195-202.
Date published:
January 1, 2008
Featured in this article:
Dong Xu.
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Predicting DNA methylation susceptibility using CpG flanking sequences. Kim S, Li M, Pair H, Nephew K, Shi H, Kramer R, Xu D, Huang T-H. Pacific Symposium on Biocomputing 2008, PSB 2008; 315-326.
Date published:
January 1, 2008
Featured in this article:
Dong Xu.
Comparative therapeutic effects of orally administered 1,25- dihydroxyvitamin D₃ and 1alpha-hydroxyvitamin D₃ on type-1 diabetes in non-obese diabetic mice fed a normal-calcaemic diet. Driver JP, Foreman O, Mathieu C, Van Etten E, Serreze DV. Clinical and Experimental Immunology; 151(1):76-85.
Date published:
January 1, 2008
Featured in this article:
John Driver.
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Genetically Modified Organisms for Agricultural Food Production: The Extent of the Art and the State of the Science. Roberts RM. Labeling Genetically Modified Food: The Philosophical and Legal Debate; 10-16.
Date published:
January 1, 2008
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.
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2007
Ubiquitin-dependent virus particle budding without viral protein ubiquitination. Zhadina M, McClure MO, Johnson MC, Bieniasz PD. Proceedings of the National Academy of Sciences of the United States of America; 104(50):20031-20036.
Date published:
December 11, 2007
Featured in this article:
Marc Johnson.
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Delayed leaf senescence induces extreme drought tolerance in a flowering plant. Rivero RM, Kojima M, Gepstein A, Sakakibara H, Mittler R, Gepstein S, Blumwald E. Proceedings of the National Academy of Sciences of the United States of America; 104(49):19631-19636.
Date published:
December 4, 2007
Featured in this article:
Ron Mittler.
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Alternative splicing and mRNA levels of the disease resistance gene RPS4 are induced during defense responses. Zhang X-C, Gassmann W. Plant Physiology; 145(4):1577-1587.
Date published:
December 1, 2007
Featured in this article:
Walter Gassmann.
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Transcriptional and physiological responses of Bradyrhizobium japonicum to desiccation-induced stress (Journal of Bacteriology (2007) 189, 19, (6751-6752)). Cytryn EJ, Sangurdekar DP, Streeter JG, Frank WL, Chang W-S, Stacey G, Emerich DW, Joshi T, Xu D, Sadowsky MJ. Journal of Bacteriology; 189(24):9150.
Date published:
December 1, 2007
Featured in this article:
Gary Stacey,
Trupti Joshi,
Dong Xu.
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Characterizing the chromosomes of the platypus (Ornithorhynchus anatinus). McMillan D, Miethke P, Alsop AE, Rens W, O'Brien P, Trifonov V, Veyrunes F, Schatzkamer K, Kremitzki CL, Graves T, Warren W, Grützner F, Ferguson-Smith MA, Graves JAM. Chromosome Research; 15(8):961-974.
Date published:
December 1, 2007
Featured in this article:
Wes Warren.
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ERRβ: A potent inhibitor of Nrf2 transcriptional activity. Zhou W, Lo S-C, Liu J-H, Hannink M, Lubahn DB. Molecular and Cellular Endocrinology; 278(1-2):52-62.
Date published:
November 15, 2007
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.
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Different mechanisms for phytoalexin induction by pathogen and wound signals in Medicago truncatula. Naoumkina M, Farag MA, Sumner LW, Tang Y, Liu C-J, Dixon RA. Proceedings of the National Academy of Sciences of the United States of America; 104(46):17909-17915.
Date published:
November 13, 2007
Featured in this article:
Lloyd Sumner.
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Ascorbate Peroxidase. Mittler R, Poulos TL. Antioxidants and Reactive Oxygen Species in Plants; 87-100.
Date published:
November 12, 2007
Featured in this article:
Ron Mittler.
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The role of auxin transport during inflorescence development in maize (Zea mays, Poaceae). Wu X, McSteen P. American Journal of Botany; 94(11):1745-1755.
Date published:
November 1, 2007
Featured in this article:
Paula McSteen.
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POFs: what we don’t know can hurt us. Gollery M, Harper J, Cushman J, Mittler T, Mittler R. Trends in Plant Science; 12(11):492-496.
Date published:
November 1, 2007
Featured in this article:
Ron Mittler.
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Quantitative proteomics in plants: Choices in abundance. Thelen JJ, Peck SC. Plant Cell; 19(11):3339-3346.
Date published:
November 1, 2007
Featured in this article:
Jay Thelen,
Scott Peck.
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Genomic changes in resynthesized Brassica napus and their effect on gene expression and phenotype. Gaeta RT, Pires JC, Iniguez-Luy F, Leon E, Osborn TC. Plant Cell; 19(11):3403-3417.
Date published:
November 1, 2007
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.
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Metabolomics data analysis, visualization, and integration. Sumner LW, Urbanczyk-Wochniak E, Broeckling CD. Methods in Molecular Biology; 406:409-436.
Date published:
November 1, 2007
Featured in this article:
Lloyd Sumner.
Unexpected functional consequences of xenogeneic transgene expression in β-cells of NOD mice. Leiter EH, Reifsnyder P, Driver J, Kamdar S, Choisy-Rossi C, Serreze DV, Hara M, Chervonsky A. Diabetes, Obesity and Metabolism; 9(SUPPL. 2):14-22.
Date published:
November 1, 2007
Featured in this article:
John Driver.
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Phenotypic diversity of Menkes disease in mottled mice is associated with defects in localisation and trafficking of the ATP7A protein. Kim B-E, Petris MJ. Journal of Medical Genetics; 44(10):641-646.
Date published:
October 1, 2007
Featured in this article:
Michael Petris.
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An oligonucleotide microarray resource for transcriptional profiling of bradyrhizobium japonicum. Chang W-S, Frank WL, Cytryn E, Jeong S, Joshi T, Emerich DW, Sadowsky MJ, Xu D, Stacey G. Molecular Plant-Microbe Interactions; 20(10):1298-1307.
Date published:
October 1, 2007
Featured in this article:
Trupti Joshi,
Dong Xu,
Gary Stacey.
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Transcriptional and physiological responses of Bradyrhizobium japonicum to desiccation-induced stress. Cytryn EJ, Sangurdekar DP, Streeter JG, Frank WL, Chang W-S, Stacey G, Emerich DW, Joshi T, Xu D, Sadowsky MJ. Journal of Bacteriology; 189(19):6751-6762.
Date published:
October 1, 2007
Featured in this article:
Gary Stacey,
Trupti Joshi,
Dong Xu.
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Comparisons among two fertile and three male-sterile mitochondrial genomes of maize. Allen JO, Fauron CM, Minx P, Roark L, Oddiraju S, Guan NL, Meyer L, Sun H, Kim K, Wang C, Du F, Xu D, Gibson M, Cifrese J, Clifton SW, Newton KJ. Genetics; 177(2):1173-1192.
Date published:
October 1, 2007
Featured in this article:
Dong Xu.
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Interferon-tau, a Type 1 interferon involved in maternal recognition of pregnancy. Roberts RM. Cytokine and Growth Factor Reviews; 18(5-6):403-408.
Date published:
October 1, 2007
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.
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The contrasting effects of Ad libitum and restricted feeding of a diet very high in saturated fats on sex ratio and metabolic hormones in mice. Alexenko AP, Mao J, Ellersieck MR, Davis AM, Whyte JJ, Rosenfeld CS, Roberts RM. Biology of Reproduction; 77(4):599-604.
Date published:
October 1, 2007
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.
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Effects of FGF2 and oxygen in the BMP4-driven differentiation of trophoblast from human embryonic stem cells. Das P, Ezashi T, Schulz LC, Westfall SD, Livingston KA, Roberts RM. Stem Cell Research; 1(1):61-74.
Date published:
October 1, 2007
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.
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A quantitative genotype algorithm reflecting H5N1 Avian influenza niches. Wan X-F, Chen G, Luo F, Emch M, Donis R. Bioinformatics; 23(18):2368-2375.
Date published:
September 15, 2007
Featured in this article:
XiuFeng “Henry” Wan.
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Ultradeep bisulfite sequencing analysis of DNA methylation patterns in multiple gene promoters by 454 sequencing. Taylor KH, Kramer RS, Davis JW, Guo J, Duff DJ, Xu D, Caldwell CW, Shi H. Cancer Research; 67(18):8511-8518.
Date published:
September 15, 2007
Featured in this article:
Dong Xu.
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Chloroplast-generated reactive oxygen species are involved in hypersensitive response-like cell death mediated by a mitogen-activated protein kinase cascade. Liu Y, Ren D, Pike S, Pallardy S, Gassmann W, Zhang S. Plant Journal; 51(6):941-954.
Date published:
September 1, 2007
Featured in this article:
Walter Gassmann.
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Quantitative phosphoproteomic analysis of plasma membrane proteins reveals regulatory mechanisms of plant innate immune responses. Nühse TS, Bottrill AR, Jones AME, Peck SC. Plant Journal; 51(5):931-940.
Date published:
September 1, 2007
Featured in this article:
Scott Peck.
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Genetic and physical maps around the sex-determining M-locus of the dioecious plant asparagus. Telgmann-Rauber A, Jamsari A, Kinney MS, Pires JC, Jung C. Molecular Genetics and Genomics; 278(3):221-234.
Date published:
September 1, 2007
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.
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The metabolomics standards initiative (MSI). Fiehn O, Robertson D, Griffin J, vab der Werf M, Nikolau B, Morrison N, Sumner LW, Goodacre R, Hardy NW, Taylor C, Fostel J, Kristal B, Kaddurah-Daouk R, Mendes P, van Ommen B, Lindon JC, Sansone S-A. Metabolomics; 3(3):175-178.
Date published:
September 1, 2007
Featured in this article:
Lloyd Sumner.
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Minimum reporting standards for plant biology context information in metabolomic studies. Fiehn O, Sumner LW, Rhee SY, Ward J, Dickerson J, Lange BM, Lane G, Roessner U, Last R, Nikolau B. Metabolomics; 3(3):195-201.
Date published:
September 1, 2007
Featured in this article:
Lloyd Sumner.
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Proposed minimum reporting standards for chemical analysis: Chemical Analysis Working Group (CAWG) Metabolomics Standards Initiative (MSI). Sumner LW, Amberg A, Barrett D, Beale MH, Beger R, Daykin CA, Fan TW-M, Fiehn O, Goodacre R, Griffin JL, Hankemeier T, Hardy N, Harnly J, Higashi R, Kopka J, Lane AN, Lindon JC, Marriott P, Nicholls AW, Reily MD, Thaden JJ, Viant MR. Metabolomics; 3(3):211-221.
Date published:
September 1, 2007
Featured in this article:
Lloyd Sumner.
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Subcongenic analysis of genetic basis for impaired development of invariant NKT cells in NOD mice. Chen Y-G, Driver JP, Silveira PA, Serreze DV. Immunogenetics; 59(9):705-712.
Date published:
September 1, 2007
Featured in this article:
John Driver.
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Genome-scale probe and primer design with PRIMEGENS. Srivastava CP, Xu D. Methods in Molecular Biology; 402:159-175.
Date published:
August 2, 2007
Featured in this article:
Dong Xu.
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Active site binding and sequence requirements for inhibition of HIV-1 reverse transcriptase by the RT1 family of single-stranded DNA aptamers. Kissel JD, Held DM, Hardy RW, Burke DH. Nucleic Acids Research; 35(15):5039-5050.
Date published:
August 1, 2007
Featured in this article:
Donald Burke-Agüero.
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Restoration of SMN function: Delivery of a trans-splicing RNA Re-directs SMN2 pre-mRNA splicing. Coady TH, Shababi M, Tullis GE, Lorson CL. Molecular Therapy; 15(8):1471-1478.
Date published:
August 1, 2007
Featured in this article:
Christian Lorson.
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Double mutants deficient in cytosolic and thylakoid ascorbate peroxidase reveal a complex mode of interaction between reactive oxygen species, plant development, and response to abiotic stresses. Miller G, Suzuki N, Rizhsky L, Hegie A, Koussevitzky S, Mittler R. Plant Physiology; 144(4):1777-1785.
Date published:
August 1, 2007
Featured in this article:
Ron Mittler.
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Identification of 118 Arabidopsis transcription factor and 30 ubiquitin-ligase genes responding to chitin, a plant-defense elicitor. Libault M, Wan J, Czechowski T, Udvardi M, Stacey G. Molecular Plant-Microbe Interactions; 20(8):900-911.
Date published:
August 1, 2007
Featured in this article:
Gary Stacey.
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The Metabolomics Standards Initiative [3]. Sansone S-A, Fan T, Goodacre R, Griffin JL, Hardy NW, Kaddurah-Daouk R, Kristal BS, Lindon J, Mendes P, Morrison N, Nikolau B, Robertson D, Sumner LW, Taylor C, Van Der Werf M, Van Ommen B, Fiehn O. Nature Biotechnology; 25(8):846-848.
Date published:
August 1, 2007
Featured in this article:
Lloyd Sumner.
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Proteomic analysis of near-isogenic sunflower varieties differing in seed oil traits. Hajduch M, Casteel JE, Tang S, Hearne LB, Knapp S, Thelen JJ. Journal of Proteome Research; 6(8):3232-3241.
Date published:
August 1, 2007
Featured in this article:
Jay Thelen.
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Retraction [CDX2 gene expression and trophectoderm lineage specification in mouse embryos]. Roberts RM, Sivaguru M, Yong HY. Science; 317(5837):450.
Date published:
July 27, 2007
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.
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Mapping genes to pathways using ontological fuzzy rule systems. Popescu M, Xu D. IEEE International Conference on Fuzzy Systems; 4295549.
Date published:
July 23, 2007
Featured in this article:
Dong Xu.
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The receptor-like kinase SERK3/BAK1 is a central regulator of innate immunity in plants. Heese A, Hann DR, Gimenez-Ibanez S, Jones AME, He K, Li J, Schroeder JI, Peck SC, Rathjen JP. Proceedings of the National Academy of Sciences of the United States of America; 104(29):12217-12222.
Date published:
July 17, 2007
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Scott Peck.
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Nitric oxide stimulates heme oxygenase-1 gene transcription via the Nrf2/ARE complex to promote vascular smooth muscle cell survival. Liu X-m, Peyton KJ, Ensenat D, Wang H, Hannink M, Alam J, Durante W. Cardiovascular Research; 75(2):381-389.
Date published:
July 15, 2007
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Nucleotide composition string selection in HIV-1 subtyping using whole genomes. Wu X, Cai Z, Wan X-F, Hoang T, Goebel R, Lin G. Bioinformatics; 23(14):1744-1752.
Date published:
July 15, 2007
Featured in this article:
XiuFeng “Henry” Wan.
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The syntaxin SYP132 contributes to plant resistance against bacteria and secretion of pathogenesis-related protein 1. Kalde M, Nühse TS, Findlay K, Peck SC. Proceedings of the National Academy of Sciences of the United States of America; 104(28):11850-11855.
Date published:
July 10, 2007
Featured in this article:
Scott Peck.
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Quantitative assessment of relationship between sequence similarity and function similarity. Joshi T, Xu D. BMC Genomics; 8:222.
Date published:
July 9, 2007
Featured in this article:
Trupti Joshi,
Dong Xu.
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A new method for protein tertiary structure prediction. Shang Y, Bondugula R, Xu D, Wang Q. Proceedings of the 3rd IASTED International Conference on Computational Intelligence, CI 2007; 13-18.
Date published:
July 2, 2007
Featured in this article:
Dong Xu.
Distinct, crucial roles of flavonoids during legume nodulation. Subramaniam S, Stacey G, Yu O. Trends in Plant Science; 12(7):282-285.
Date published:
July 1, 2007
Featured in this article:
Gary Stacey.
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CodonO: Codon usage bias analysis within and across genomes. Angellotti MC, Bhuiyan SB, Chen G, Wan X-F. Nucleic Acids Research; 35(SUPPL.2):W132-W136.
Date published:
July 1, 2007
Featured in this article:
XiuFeng “Henry” Wan.
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A microarray analysis for genes regulated by interferon-τ in ovine luminal epithelial cells. Chen Y, Antoniou E, Liu Z, Hearne LB, Roberts RM. Reproduction; 134(1):123-135.
Date published:
July 1, 2007
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.
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Two type III effector genes of Xanthomonas oryzae pv. oryzae control the induction of the host genes OsTFIIAγ1 and OsTFX1 during bacterial blight of rice. Sugio A, Yang B, Zhu T, White FF. Proceedings of the National Academy of Sciences of the United States of America; 104(25):10720-10725.
Date published:
June 19, 2007
Featured in this article:
Bing Yang.
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Distinct reaction pathway promoted by non-divalent-metal cations in a tertiary stabilized hammerhead ribozyme. Roychowdhury-Saha M, Burke DH. RNA; 13(6):841-848.
Date published:
June 1, 2007
Featured in this article:
Donald Burke-Agüero.
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barren inflorescence2 Encodes a co-ortholog of the Pinoid serine/threonine kinase and is required for organogenesis during inflorescence and vegetative development in maize. McSteen P, Malcomber S, Skirpan A, Lunde C, Wu X, Kellogg E, Hake S. Plant Physiology; 144(2):1000-1011.
Date published:
June 1, 2007
Featured in this article:
Paula McSteen.
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Molecular evolution of lysin motif-type receptor-like kinases in plants. Zhang X-C, Wu X, Findley S, Wan J, Libault M, Nguyen HT, Cannon SB, Stacey G. Plant Physiology; 144(2):623-636.
Date published:
June 1, 2007
Featured in this article:
Gary Stacey.
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Legumes symbioses: Absence of Nod genes in photosynthetic bradyrhizobia. Giraud E, Moulin L, Vallenet D, Barbe V, Cytryn E, Avarre J-C, Jaubert M, Simon D, Cartieaux F, Prin Y, Bena G, Hanninal L, Fardoux J, Kojadinovic M, Vuillet L, Lajus A, Cruveiller S, Rouy Z, Mangenot S, Segurens B, Dossat C, Frank WL, Chang W-S, Saunders E, Bruce D, Richardson P, Normand P, Dreyfus B, Pignol D, Stacey G, Emerich D, Verméglio A, Médigue C, Sadowsky M. Science; 316(5829):1307-1312.
Date published:
June 1, 2007
Featured in this article:
Gary Stacey.
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Heterologous expression of two Medicago truncatula putative ERF transcription factor genes, WXP1 and WXP2, in Arabidopsis led to increased leaf wax accumulation and improved drought tolerance, but differential response in freezing tolerance. Zhang J-Y, Broeckling CD, Sumner LW, Wang Z-Y. Plant Molecular Biology; 64(3):265-278.
Date published:
June 1, 2007
Featured in this article:
Lloyd Sumner.
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MedicCyc: A biochemical pathway database for Medicago truncatula. Urbanczyk-Wochniak E, Sumner LW. Bioinformatics; 23(11):1418-1423.
Date published:
June 1, 2007
Featured in this article:
Lloyd Sumner.
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Relationship between genome similarity and DNA-DNA hybridization among closely related bacteria. Kang C-H, Nam Y-D, Chung W-H, Quan Z-X, Park Y-H, Park S-J, Desmone R, Wan X-F, Rhee S-K. Journal of Microbiology and Biotechnology; 17(6):645-651.
Date published:
June 1, 2007
Featured in this article:
XiuFeng “Henry” Wan.
Bioinformatics Analyses of Arabidopsis thaliana Tiling Array Expression Data. Joshi T, Wan J, Palm CJ, Juneau K, Davis R, Southwick A, Ramonell KM, Stacey G, Xu D. Knowledge Discovery in Bioinformatics: Techniques, Methods, and Applications; 57-70.
Date published:
May 23, 2007
Featured in this article:
Trupti Joshi,
Gary Stacey,
Dong Xu.
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Probing protein adsorption onto mercaptoundecanoic acid stabilized gold nanoparticles and surfaces by quartz crystal microbalance and ζ-potential measurements. Kaufman ED, Belyea J, Johnson MC, Nicholson ZM, Ricks JL, Shah PK, Bayless M, Pettersson T, Feldotö Z, Blomberg E, Claesson P, Franzen S. Langmuir; 23(11):6053-6062.
Date published:
May 22, 2007
Featured in this article:
Marc Johnson.
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Signals from chloroplasts converge to regulate nuclear gene expression. Koussevitzky S, Nott A, Mockler TC, Hong F, Sachetto-Martins G, Surpin M, Lim J, Mittler R, Chory J. Science; 316(5825):715-719.
Date published:
May 4, 2007
Featured in this article:
Ron Mittler.
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Cross-clade inhibition of recombinant human immunodeficiency virus type 1 (HIV-1), HIV-2, and simian immunodeficiency virus SIVcpz reverse transcriptases by RNA pseudoknot aptamers. Held DM, Kissel JD, Thacker SJ, Michalowski D, Saran D, Ji A, Hardy RW, Rossi JJ, Burke DH. Journal of Virology; 81(10):5375-5384.
Date published:
May 1, 2007
Featured in this article:
Donald Burke-Agüero.
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Single-stranded DNA aptamer RT1t49 inhibits RT polymerase and RNase H functions of HIV type 1, HIV type 2, and SIVCPZ RTs. Kissel JD, Held DM, Hardy RW, Burke DH. AIDS Research and Human Retroviruses; 23(5):699-708.
Date published:
May 1, 2007
Featured in this article:
Donald Burke-Agüero.
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The FRD3-mediated efflux of citrate into the root vasculature is necessary for efficient iron translocation. Durrett TP, Gassmann W, Rogers EE. Plant Physiology; 144(1):197-205.
Date published:
May 1, 2007
Featured in this article:
Walter Gassmann.
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Disruption of the Keap1-containing ubiquitination complex as an antioxidant therapy. Kern JT, Hannink M, Hess JF. Current Topics in Medicinal Chemistry; 7(10):972-978.
Date published:
May 1, 2007
Featured in this article:
.
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Amino acid profiling in plant cell cultures: An inter-laboratory comparison of CE-MS and GC-MS. Williams BJ, Cameron CJ, Workman R, Broeckling CD, Sumner LW, Smith JT. Electrophoresis; 28(9):1371-1379.
Date published:
May 1, 2007
Featured in this article:
Lloyd Sumner.
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The P2Y₂ nucleotide receptor requires interaction with αv integrins to access and activate G₁₂. Liao Z, Seye CI, Weisman GA, Erb L. Journal of Cell Science; 120(9):1654-1662.
Date published:
May 1, 2007
Featured in this article:
Gary Weisman.
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Evolutionary and biomedical insights from the rhesus macaque genome. Gibbs RA, Rogers J, Katze MG, Bumgarner R, Weinstock GM, Mardis ER, Remington KA, Strausberg RL, Venter JC, Wilson RK, Batzer MA, Bustamante CD, Eichler EE, Hahn MW, Hardison RC, Makova KD, Miller W, Milosavljevic A, Palermo RE, Siepel A, Sikela JM, Attaway T, Bell S, Bernard KE, Buhay CJ, Chandrabose MN, Dao M, Davis C, Delehaunty KD, Ding Y, Dinh HH, Dugan-Rocha S, Fulton LA, Gabisi RA, Garner TT, Godfrey J, Hawes AC, Hernandez J, Hines S, Holder M, Hume J, Jhangiani SN, Joshi V, Khan ZM, Kirkness EF, Cree A, Fowler RG, Lee S, Lewis LR, Li Z, Liu Y-S, Moore SM, Muzny D, Nazareth LV, Dinh NN, Okwuonu GO, Pai G, Parker D, Paul HA, Pfannkoch C, Pohl CS, Rogers Y-H, Ruiz SJ, Sabo A, Santibanez J, Schneider BW, Smith SM, Sodergren E, Svatek AF, Utterback TR, Vattathil S, Warren W, White CS, Chinwalla AT, Feng Y, Halpern AL, Hillier LW, Huang X, Minx P, Nelson JO, Pepin KH, Qin X, Sutton GG, Venter E, Walenz BP, Wallis JW, Worley KC, Yang S-P, Jones SM, Marra MA, Rocchi M, Schein JE, Baertsch R, Clarke L, Csürös M, Glasscock J, Harris RA, Havlak P, Jackson AR, Jiang H, Liu Y, Messina DN, Shen Y, Song HX-Z, Wylie T, Zhang L, Birney E, Han K, Konkel MK, Lee J, Smit AFA, Ullmer B, Wang H, Xing J, Burhans R, Cheng Z, Karro JE, Ma J, Raney B, She X, Cox MJ, Demuth JP, Dumas LJ, Han S-G, Hopkins J, Karimpour-Fard A, Kim YH, Pollack JR, Vinar T, Addo-Quaye C, Degenhardt J, Denby A, Hubisz MJ, Indap A, Kosiol C, Lahn BT, Lawson HA, Marklein A, Nielsen R, Vallender EJ, Clark AG, Ferguson B, Hernandez RD, Hirani K, Kehrer-Sawatzki H, Kolb J, Patil S, Pu L-L, Ren Y, Smith DG, Wheeler DA, Schenck I, Ball EV, Chen R, Cooper DN, Giardine B, Hsu F, Kent WJ, Lesk A, Nelson DL, O'Brien WE, Prüfer K, Stenson PD, Wallace JC, Ke H, Liu X-M, Wang P, Xiang AP, Yang F, Barber GP, Haussler D, Karolchik D, Kern AD, Kuhn RM, Smith KE, Zwieg AS. Science; 316(5822):222-234.
Date published:
April 13, 2007
Featured in this article:
Wes Warren.
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Participation of the fingers subdomain of Escherichia coli DNA polymerase I in the strand displacement synthesis of DNA. Singh K, Srivastava A, Patel SS, Modak MJ. Journal of Biological Chemistry; 282(14):10594-10604.
Date published:
April 6, 2007
Featured in this article:
Kamlendra Singh.
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Multidimensional protein identification technology (Mud(PIT) analysis of ubiquitinated proteins in plants. Maor R, Jones A, Nühse TS, Studholme DJ, Peck SC, Shirasu K. Molecular and Cellular Proteomics; 6(4):601-610.
Date published:
April 1, 2007
Featured in this article:
Scott Peck.
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Ascovirus and its evolution. Cheng X-W, Wan X-F, Xue J, Moore RC. Virologica Sinica; 22(2):137-147.
Date published:
April 1, 2007
Featured in this article:
XiuFeng “Henry” Wan.
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GoFuzzKegg: Mapping genes to KEGG pathways using an ontological fuzzy rule system. Popescu M, Xu D, Taylor E. 2007 IEEE Symposium on Computational Intelligence and Bioinformatics and Computational Biology, CIBCB 2007; 298-303.
Date published:
April 1, 2007
Featured in this article:
Dong Xu.
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The EAR-motif of the Cys2/His2-type zinc finger protein Zat7 plays a key role in the defense response of Arabidopsis to salinity stress. Ciftci-Yilmaz S, Morsy MR, Song L, Coutu A, Krizek BA, Lewis MW, Warren D, Cushman J, Connolly EL, Mittler R. Journal of Biological Chemistry; 282(12):9260-6268.
Date published:
March 23, 2007
Featured in this article:
Ron Mittler.
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Fluorescent in situ hybridization for sex chromosome determination before and after fertilization in mice. Whyte JJ, Roberts RM, Rosenfeld CS. Theriogenology; 67(5):1022-1031.
Date published:
March 15, 2007
Featured in this article:
.
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Single feature polymorphism discovery in rice. Kumar R, Qiu J, Joshi T, Valliyodan B, Xu D, Nguyen HT. PLoS ONE; 2(3):e284.
Date published:
March 14, 2007
Featured in this article:
Trupti Joshi,
Dong Xu.
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A histidine-rich cluster mediates the ubiquitination and degradation of the human zinc transporter, hZIP4, and protects against zinc cytotoxicity. Mao X, Kim B-E, Wang F, Eide DJ, Petris MJ. Journal of Biological Chemistry; 282(10):6992-7000.
Date published:
March 2, 2007
Featured in this article:
Michael Petris.
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Conformational dynamics of self-thiophosphorylating RNA. Cho B-R, Burke DH. Bulletin of the Korean Chemical Society; 28(3):463-466.
Date published:
March 1, 2007
Featured in this article:
Donald Burke-Agüero.
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The C-terminal portion of the Hrs protein interacts with Tsg101 and interferes with human immunodeficiency virus type 1 Gag particle production. Bouamr F, Houck-Loomis BR, De Los Santos M, Casaday RJ, Johnson MC, Goff SP. Journal of Virology; 81(6):2909-2922.
Date published:
March 1, 2007
Featured in this article:
Marc Johnson.
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Development and assessment of scoring functions for protein identification using PMF data. Zhao S, Chen L, Ganapathy A, Wan X-F, Brechenmacher L, Tao N, Emerich D, Stacey G, Xu D. Electrophoresis; 28(5):864-870.
Date published:
March 1, 2007
Featured in this article:
XiuFeng “Henry” Wan,
Gary Stacey,
Dong Xu.
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P2 receptors in atherosclerosis and postangioplasty restenosis. Seye CI, Kong Q, Yu N, Gonzalez FA, Erb L, Weisman GA. Purinergic Signalling; 3(1-2):153-162.
Date published:
March 1, 2007
Featured in this article:
Gary Weisman.
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Ets-2 and C/EBP-beta are important mediators of ovine trophoblast Kunitz domain protein-1 gene expression in trophoblast. Chakrabarty A, Roberts RM. BMC Molecular Biology; 8:14.
Date published:
February 27, 2007
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.
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Cell wall composition affects Cd2+ accumulation and intracellular thiol peptides in marine red algae. García-Ríos V, Freile-Pelegrín Y, Robledo D, Mendoza-Cózatl D, Moreno-Sánchez R, Gold-Bouchot G. Aquatic Toxicology; 81(1):65-72.
Date published:
February 15, 2007
Featured in this article:
David Mendoza-Cózatl.
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MUPRED: A tool for bridging the gap between template based methods and sequence profile based methods for protein secondary structure prediction. Bondugula R, Xu D. Proteins: Structure, Function and Genetics; 66(3):664-670.
Date published:
February 15, 2007
Featured in this article:
Dong Xu.
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Metabolic profiling and systematic identification of flavonoids and isoflavonoids in roots and cell suspension cultures of Medicago truncatula using HPLC-UV-ESI-MS and GC-MS. Farag MA, Huhman DV, Lei Z, Sumner LW. Phytochemistry; 68(3):342-354.
Date published:
February 1, 2007
Featured in this article:
Lloyd Sumner.
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A versatile photocleavable bifunctional linker for facile synthesis of substrate-DNA conjugates for the selection of nucleic acid catalysts. Saran D, Burke DH. Bioconjugate Chemistry; 18(1):275-279.
Date published:
January 1, 2007
Featured in this article:
Donald Burke-Agüero.
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Preparative denaturing isoelectric focusing for enhancing sensitivity of proteomic studies. Serna-Sanz A, Rairdan G, Peck SC. Methods in molecular biology (Clifton, N.J.); 354:99-104.
Date published:
January 1, 2007
Featured in this article:
Scott Peck.
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The Rhizobium-Legume Nitrogen-Fixing Symbiosis. Stacey G. Biology of the Nitrogen Cycle; 147-163.
Date published:
January 1, 2007
Featured in this article:
Gary Stacey.
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Methods, applications and concepts of metabolite profiling: secondary metabolism. Sumner LW, Huhman DV, Urbanczyk-Wochniak E, Lei Z. EXS; 97:195-212.
Date published:
January 1, 2007
Featured in this article:
Lloyd Sumner.
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Isolation of cell wall proteins from Medicago sativa stems. Watson BS, Sumner LW. Methods in molecular biology (Clifton, N.J.); 355:79-92.
Date published:
January 1, 2007
Featured in this article:
Lloyd Sumner.
Electroelution of intact proteins from SDS-PAGE gels and their subsequent MALDI-TOF MS analysis. Lei Z, Anand A, Mysore KS, Sumner LW. Methods in molecular biology (Clifton, N.J.); 355:353-363.
Date published:
January 1, 2007
Featured in this article:
Lloyd Sumner.
Proteomics of Medicago truncatula. Lei Z, Nagaraj S, Watson BS, Sumner LW. Plant Proteomics; 121-136.
Date published:
January 1, 2007
Featured in this article:
Lloyd Sumner.
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The effects of down-regulating expression of Arabidopsis thaliana membrane-associated acyl-CoA binding protein 2 on acyl-lipid composition. Kojima M, Casteel J, Miernyk JA, Thelen JJ. Plant Science; 172(1):36-44.
Date published:
January 1, 2007
Featured in this article:
Jay Thelen.
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Introduction to proteomics: A brief historical perspective on contemporary approaches. Thelen JJ. Plant Proteomics; 1-13.
Date published:
January 1, 2007
Featured in this article:
Jay Thelen.
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Proteomics of seed development in oilseed crops. Hajduch M, Agrawal GK, Thelen JJ. Plant Proteomics; 137-154.
Date published:
January 1, 2007
Featured in this article:
Jay Thelen.
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Plant proteomics. Šamaj J, Thelen JJ. Plant Proteomics; 1-369.
Date published:
January 1, 2007
Featured in this article:
Jay Thelen.
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Computational identification of reassortments in avian influenza viruses. Wan X-F, Wu X, Lin G, Holton SB, Desmone RA, Shyu C-R, Guan Y, Emch ME. Avian Diseases; 51(SUPPL. 1):434-439.
Date published:
January 1, 2007
Featured in this article:
XiuFeng “Henry” Wan.
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2006
TRPV1⁺ Sensory Neurons Control β Cell Stress and Islet Inflammation in Autoimmune Diabetes. Razavi R, Chan Y, Afifiyan FN, Liu XJ, Wan X, Yantha J, Tsui H, Tang L, Tsai S, Santamaria P, Driver JP, Serreze D. Cell; 127(6):1123-1135.
Date published:
December 15, 2006
Featured in this article:
John Driver.
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Efficient and sensitive method for quantitative analysis of alkaloids in hardinggrass (Phalaris aquatica L.). Zhou L, Hopkins AA, Huhman DV, Sumner LW. Journal of Agricultural and Food Chemistry; 54(25):9287-9291.
Date published:
December 13, 2006
Featured in this article:
Lloyd Sumner.
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Gain- and loss-of-function mutations in Zat10 enhance the tolerance of plants to abiotic stress. Mittler R, Kim Y, Song L, Coutu J, Coutu A, Ciftci-Yilmaz S, Lee H, Stevenson B, Zhu J-K. FEBS Letters; 580(28-29):6537-6542.
Date published:
December 11, 2006
Featured in this article:
Ron Mittler.
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PGAM5, a Bcl-XL-interacting protein, is a novel substrate for the redox-regulated Keap1-dependent ubiquitin ligase complex. Lo S-C, Hannink M. Journal of Biological Chemistry; 281(49):37893-37903.
Date published:
December 8, 2006
Featured in this article:
.
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Topological rearrangement yields structural stabilization and interhelical distance constraints in the Kin.46 self-phosphorylating ribozyme. Cho B, Burke DH. RNA; 12(12):2118-2125.
Date published:
December 1, 2006
Featured in this article:
Donald Burke-Agüero.
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Plasma membrane is the site of productive HIV-1 particle assembly. Jouvenet N, Neil SJD, Bess C, Johnson MC, Virgen CA, Simon SM, Bieniasz PD. PLoS Biology; 4(12):2296-2310.
Date published:
December 1, 2006
Featured in this article:
Marc Johnson.
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Phytochelatin-cadmium-sulfide high-molecular-mass complexes of Euglena gracilis. Mendoza-Cózatl DG, Rodríguez-Zavala JS, Rodríguez-Enríquez S, Mendoza-Hernandez G, Briones-Gallardo R, Moreno-Sánchez R. FEBS Journal; 273(24):5703-5713.
Date published:
December 1, 2006
Featured in this article:
David Mendoza-Cózatl.
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MEKK1 is required for MPK4 activation and regulates tissue-specific and temperature-dependent cell death in Arabidopsis. Ichimura K, Casais C, Peck SC, Shinozaki K, Shirasu K. Journal of Biological Chemistry; 281(48):36969-36976.
Date published:
December 1, 2006
Featured in this article:
Scott Peck.
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Toward a reference sequence of the soybean genome: A multiagency effort. Jackson SA, Rokhsar D, Stacey G, Shoemaker RC, Schmutz J, Grimwood J. Crop Science; 46(SUPPL. 1):S-55-S-61.
Date published:
December 1, 2006
Featured in this article:
Gary Stacey.
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Arabidopsis seed development and germination is associated with temporally distinct metabolic switches. Fait A, Angelovici R, Less H, Ohad I, Urbanczyk-Wochniak E, Fernie AR, Galili G. Plant Physiology; 142(3):839-854.
Date published:
November 1, 2006
Featured in this article:
Ruthie Angelovici.
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A constitutive shade-avoidance mutant implicates TIR-NBS-LRR proteins in Arabidopsis photomorphogenic development. Faigón-Soverna A, Harmon FG, Storani L, Karayekov E, Staneloni RJ, Gassmann W, Más P, Casal JJ, Kay SA, Yanovsky MJ. Plant Cell; 18(11):2919-2928.
Date published:
November 1, 2006
Featured in this article:
Walter Gassmann.
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Novel aminoglycosides increase SMN levels in spinal muscular atrophy fibroblasts. Mattis VB, Rai R, Wang J, Chang C-WT, Coady T, Lorson CL. Human Genetics; 120(4):589-601.
Date published:
November 1, 2006
Featured in this article:
Christian Lorson.
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Simultaneous Cd2+, Zn2+, and Pb2+ uptake and accumulation by photosynthetic Euglena gracilis. Mendoza-Cózatl DG, Rangel-González E, Moreno-Sánchez R. Archives of Environmental Contamination and Toxicology; 51(4):521-528.
Date published:
November 1, 2006
Featured in this article:
David Mendoza-Cózatl.
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The Arabidopsis MAP kinase kinase MKK1 participates in defence responses to the bacterial elicitor flagellin. Mészáros T, Helfer A, Hatzimasoura E, Magyar Z, Serazetdinova L, Rios G, Bardóczy V, Teige M, Koncz C, Peck S, Bögre L. Plant Journal; 48(4):485-498.
Date published:
November 1, 2006
Featured in this article:
Scott Peck.
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Extracellular ATP in plants. Visualization, localization, and analysis of physiological significance in growth and signaling. Kim S-Y, Sivaguru M, Stacey G. Plant Physiology; 142(3):984-992.
Date published:
November 1, 2006
Featured in this article:
Gary Stacey.
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Functional analysis of members of the isoflavone and isoflavanone O-methyltransferase enzyme families from the model legume Medicago truncatula. Deavours BE, Liu C-J, Naoumkina MA, Tang Y, Farag MA, Sumner LW, Noel JP, Dixon RA. Plant Molecular Biology; 62(4-5):715-733.
Date published:
November 1, 2006
Featured in this article:
Lloyd Sumner.
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Large scale identification and quantitative profiling of phosphoproteins expressed during seed filling in oilseed rape. Agrawal GK, Thelen JJ. Molecular and Cellular Proteomics; 5(11):2044-2059.
Date published:
November 1, 2006
Featured in this article:
Jay Thelen.
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Survival motor neuron function in motor axons is independent of functions required for small nuclear ribonucleoprotein biogenesis. Carrel TL, McWhorter ML, Workman E, Zhang H, Wolstencroft EC, Lorson C, Bassell GJ, Burghes AHM, Beattie CE. Journal of Neuroscience; 26(43):11014-11022.
Date published:
October 25, 2006
Featured in this article:
Christian Lorson.
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Surface plasmon resonance sensors for detection of survival of motor neuron protein. Mitropanopoulos M, Campanaro B, Malone M, Masson J-F, Nieman RA, Lorson CL, Booksh KS. Proceedings of SPIE - The International Society for Optical Engineering; 6380:638008.
Date published:
October 3, 2006
Featured in this article:
Christian Lorson.
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HIV-1 reverse transcriptase pausing at bulky 2′ adducts is relieved by deletion of the RNase H domain. Patterson JT, Nickens DG, Burke DH. RNA Biology; 3(4):163-169.
Date published:
October 1, 2006
Featured in this article:
Donald Burke-Agüero.
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Inferring gene regulatory networks from multiple microarray datasets. Wang Y, Joshi T, Zhang X-S, Xu D, Chen L. Bioinformatics; 22(19):2413-2420.
Date published:
October 1, 2006
Featured in this article:
Trupti Joshi,
Dong Xu.
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Endogenous isoflavones are essential for the establishment of symbiosis between soybean and Bradyrhizobium japonicum. Subramaniam S, Stacey G, Yu O. Plant Journal; 48(2):261-273.
Date published:
October 1, 2006
Featured in this article:
Gary Stacey.
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GC-MS SPME profiling of rhizobacterial volatiles reveals prospective inducers of growth promotion and induced systemic resistance in plants. Farag MA, Ryu C-M, Sumner LW, Paré PW. Phytochemistry; 67(20):2262-2268.
Date published:
October 1, 2006
Featured in this article:
Lloyd Sumner.
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Using quantitative proteomics of Arabidopsis roots and leaves to predict metabolic activity. Mooney BP, Miernyk JA, Michael Greenlief C, Thelen JJ. Physiologia Plantarum; 128(2):237-250.
Date published:
October 1, 2006
Featured in this article:
Jay Thelen.
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Rnall: An efficient algorithm for predicting RNA local secondary structural landscape in genomes. Wan X-F, Lin G, Xu D. Journal of Bioinformatics and Computational Biology; 4(5):1015-1031.
Date published:
October 1, 2006
Featured in this article:
XiuFeng “Henry” Wan,
Dong Xu.
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Differential susceptibility of HIV-1 reverse transcriptase to inhibition by RNA aptamers in enzymatic reactions monitoring specific steps during genome replication. Held DM, Kissel JD, Saran D, Michalowski D, Burke DH. Journal of Biological Chemistry; 281(35):25712-25722.
Date published:
September 1, 2006
Featured in this article:
Donald Burke-Agüero.
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Comparative analysis of HIV-1 recombinant envelope glycoproteins from different culture systems. Jeffs SA, Goriup S, Stacey G, Yuen C-T, Holmes H. Applied Microbiology and Biotechnology; 72(2):279-290.
Date published:
September 1, 2006
Featured in this article:
Gary Stacey.
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P2 receptors in atherosclerosis and postangioplasty restenosis. Seye CI, Kong Q, Yu N, Gonzalez FA, Erb L, Weisman GA. Purinergic Signalling; 2(3):471-480.
Date published:
September 1, 2006
Featured in this article:
Gary Weisman.
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Design and implementation of probability-based scoring function for peptide mass fingerprinting protein identification. Song Z, Chen L, Zhang C, Xu D. Annual International Conference of the IEEE Engineering in Medicine and Biology - Proceedings; 4556-4559.
Date published:
August 30, 2006
Featured in this article:
Dong Xu.
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Supervised inference of gene regulatory networks by linear programming. Wang Y, Joshi T, Xu D, Zhang X-S, Chen L. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); 4115 LNBI-III:551-561.
Date published:
August 16, 2006
Featured in this article:
Trupti Joshi,
Dong Xu.
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Extraordinary rates of transition metal ion-mediated ribozyme catalysis. Roychowdhury-Saha M, Burke DH. RNA; 12(10):1846-1852.
Date published:
August 15, 2006
Featured in this article:
Donald Burke-Agüero.
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Taking the first steps towards a standard for reporting on phylogenies: Minimum Information about a Phylogenetic Analysis (MIAPA). Leebens-Mack J, Vision T, Brenner E, Bowers JE, Cannon S, Clement MJ, Cunningham CW, DePamphilis C, DeSalle R, Doyle JJ, Eisen JA, Gu X, Harshman J, Jansen RK, Kellogg EA, Koonin EV, Mishler BD, Philippe H, Pires JC, Qiu Y-L, Rhee SY, Sjölander K, Soltis DE, Soltis PS, Stevenson DW, Wall K, Warnow T, Zmasek C. OMICS A Journal of Integrative Biology; 10(2):231-237.
Date published:
August 10, 2006
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.
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Structure of the Keap1:Nrf2 interface provides mechanistic insight into Nrf2 signaling. Lo S-C, Li X, Henzl MT, Beamer LJ, Hannink M. EMBO Journal; 25(15):3605-3617.
Date published:
August 9, 2006
Featured in this article:
.
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Could heat shock transcription factors function as hydrogen peroxide sensors in plants?. Miller G, Mittler R. Annals of Botany; 98(2):279-288.
Date published:
August 1, 2006
Featured in this article:
Ron Mittler.
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Effects of endogenous salicylic acid on nodulation in the model legumes Lotus japonicus and Medicago truncatula. Stacey G, McAlvin CB, Kim S-Y, Olivares J, Soto MJ. Plant Physiology; 141(4):1473-1481.
Date published:
August 1, 2006
Featured in this article:
Gary Stacey.
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Protein and lipid composition analysis of oil bodies from two Brassica napus cultivars. Katavic V, Agrawal GK, Hajduch M, Harris SL, Thelen JJ. Proteomics; 6(16):4586-4598.
Date published:
August 1, 2006
Featured in this article:
Jay Thelen.
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Temporal transcriptomic analysis as Desulfovibrio vulgaris Hildenborough transitions into stationary phase during electron donor depletion. Clark ME, He Q, He Z, Huang KH, Alm EJ, Wan X-F, Hazen TC, Arkin AP, Wall JD, Zhou J-Z, Fields MW. Applied and Environmental Microbiology; 72(8):5578-5588.
Date published:
August 1, 2006
Featured in this article:
XiuFeng “Henry” Wan.
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P2 receptors: Intracellular signaling. Erb L, Liao Z, Seye CI, Weisman GA. Pflugers Archiv European Journal of Physiology; 452(5):552-562.
Date published:
August 1, 2006
Featured in this article:
Gary Weisman.
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Rapid evolution of the trophoblast kunitz domain proteins (TKDPs) – A multigene family in ruminant ungulates. Chakrabarty A, MacLean JA II, Hughes AL, Roberts RM, Green JA. Journal of Molecular Evolution; 63(2):274-282.
Date published:
August 1, 2006
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.
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A fast SCOP fold classification system using content-based E-Predict algorithm. Chi P-H, Shyu C-R, Xu D. BMC Bioinformatics; 7:362.
Date published:
July 26, 2006
Featured in this article:
Dong Xu.
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What makes species unique? The contribution of proteins with obscure features. Gollery M, Harper J, Cushman J, Mittler T, Girke T, Zhu J-K, Bailey-Serres J, Mittler R. Genome Biology; 7(7):R57.
Date published:
July 19, 2006
Featured in this article:
Ron Mittler.
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Os8N3 is a host disease-susceptibility gene for bacterial blight of rice. Yang B, Sugio A, White FF. Proceedings of the National Academy of Sciences of the United States of America; 103(27):10503-10508.
Date published:
July 4, 2006
Featured in this article:
Bing Yang.
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Stimulating Full-Length SMN2 Expression by Delivering Bifunctional RNAs via a Viral Vector. Baughan T, Shababi M, Coady TH, Dickson AM, Tullis GE, Lorson CL. Molecular Therapy; 14(1):54-62.
Date published:
July 1, 2006
Featured in this article:
Christian Lorson.
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MET-IDEA: Data extraction tool for mass spectrometry-based metabolomics. Broeckling CD, Reddy IR, Duran AL, Zhao X, Sumner LW. Analytical Chemistry; 78(13):4334-4341.
Date published:
July 1, 2006
Featured in this article:
Lloyd Sumner.
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Erratum: Proteomic analysis of seed filling in Brassica napus. Developmental characterization of metabolic isozymes using high-resolution two-dimensional gel electrophoresis (Plant Physiology (2006) 141, (32-46)). Hajduch M, Casteel JE, Hurrelmeyer KE, Song Z, Agrawal GK, Thelen JJ. Plant Physiology; 141(3):1159.
Date published:
July 1, 2006
Featured in this article:
Jay Thelen.
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The roles of reactive oxygen species in plant cells. Bailey-Serres J, Mittler R. Plant Physiology; 141(2):311.
Date published:
June 7, 2006
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Ron Mittler.
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Multiple-turnover thio-ATP hydrolase and phospho-enzyme intermediate formation activities catalyzed by an RNA enzyme. Saran D, Held DM, Burke DH. Nucleic Acids Research; 34(11):3201-3208.
Date published:
June 1, 2006
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Donald Burke-Agüero.
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Transcriptomic footprints disclose specificity of reactive oxygen species signaling in Arabidopsis. Gadjev I, Vanderauwera S, Gechev TS, Laloi C, Minkov IN, Shulaev V, Apel K, Inzé D, Mittler R, Van Breusegem F. Plant Physiology; 141(2):436-445.
Date published:
June 1, 2006
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Ron Mittler.
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Physical map-assisted whole-genome shotgun sequence assemblies. Warren RL, Varabei D, Platt D, Huang X, Messina D, Yang S-P, Kronstad JW, Krzywinski M, Warren WC, Wallis JW, Hillier LW, Chinwalla AT, Schein JE, Siddiqui AS, Marra MA, Wilson RK, Jones SJM. Genome Research; 16(6):768-775.
Date published:
June 1, 2006
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Wes Warren.
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DigitalTree: A tool for displaying biological data in tree structure. Kramer R, Olman V, Xu Y, Xu D. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); 3992 LNCS - II:855-862.
Date published:
May 28, 2006
Featured in this article:
Dong Xu.
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Origin and evolution of the TKDP gene family. Chakrabarty A, Green JA, Roberts RM. Gene; 373(1-2):35-43.
Date published:
May 24, 2006
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Differential coupling of the P2Y1 receptor to Gα14 and Gαq/11 proteins during the development of the rat salivary gland. Baker OJ, Camden JM, Ratchford AM, Seye CI, Erb L, Weisman GA. Archives of Oral Biology; 51(5):359-370.
Date published:
May 1, 2006
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Olga Baker,
Gary Weisman.
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Proteomic analysis of seed filling in Brassica napus. Developmental characterization of metabolic isozymes using high-resolution two-dimensional gel electrophoresis. Hajduch M, Casteel JE, Hurrelmeyer KE, Song Z, Agrawal GK, Thelen JJ. Plant Physiology; 141(1):32-46.
Date published:
May 1, 2006
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Jay Thelen.
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Effect of interferon-τ administration on endometrium of nonpregnant ewes: A comparison with pregnant ewes. Chen Y, Green JA, Antoniou E, Ealy AD, Mathialagan N, Walker AM, Avalle MP, Rosenfeld CS, Hearne LB, Roberts RM. Endocrinology; 147(5):2127-2137.
Date published:
May 1, 2006
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Modification-specific proteomics of plasma membrane proteins: Identification and characterization of glycosylphosphatidylinositol-anchored proteins released upon phospholipase D treatment. Elortza F, Mohammed S, Bunkenborg J, Foster LJ, Nühse TS, Brodbeck U, Peck SC, Jensen ON. Journal of Proteome Research; 5(4):935-943.
Date published:
April 1, 2006
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Scott Peck.
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Phosphoproteomics in Arabidopsis: Moving from empirical to predictive science. Peck SC. Journal of Experimental Botany; 57(7):1523-1527.
Date published:
April 1, 2006
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Scott Peck.
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Evolutionary history of the angiosperms and its relevance to Brassica. Paterson AH, Bowers JE, Estill JC, Osborn TC, Pires JC, Amasino R, Quiros CF, Farnham M. Acta Horticulturae; 706:49-53.
Date published:
April 1, 2006
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Genetics and functional genomics of legume nodulation. Stacey G, Libault M, Brechenmacher L, Wan J, May GD. Current Opinion in Plant Biology; 9(2):110-121.
Date published:
April 1, 2006
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Gary Stacey.
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The ribosomal shunt translation strategy of Cauliflower mosaic virus has evolved from ancient long terminal repeats. Shababi M, Bourque J, Palanichelvam K, Cole A, Xu D, Wan X-F, Schoelz J. Journal of Virology; 80(8):3811-3822.
Date published:
April 1, 2006
Featured in this article:
Dong Xu,
XiuFeng “Henry” Wan.
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Lysine catabolism, an effective versatile regulator of lysine level in plants. Stepansky A, Less H, Angelovici R, Aharon R, Zhu X, Galili G. Amino Acids; 30(2):121-125.
Date published:
March 1, 2006
Featured in this article:
Ruthie Angelovici.
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Branching out: The ramosa pathway and the evolution of grass inflorescence morphology. McSteen P. Plant Cell; 18(3):518-522.
Date published:
March 1, 2006
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Paula McSteen.
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Control of glutathione and phytochelatin synthesis under cadmium stress. Pathway modeling for plants. Mendoza-Cózatl DG, Moreno-Sánchez R. Journal of Theoretical Biology; 238(4):919-936.
Date published:
February 21, 2006
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David Mendoza-Cózatl.
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Cdx2 gene expression and trophectoderm lineage specification in mouse embryos. Deb K, Sivaguru M, Yong HY, Roberts RM. Science; 311(5763):992-996.
Date published:
February 17, 2006
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CAND1-mediated substrate adaptor recycling is required for efficient repression of Nrf2 by Keap1. Lo S-C, Hannink M. Molecular and Cellular Biology; 26(4):1235-1244.
Date published:
February 1, 2006
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.
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Analysis of protein phosphorylation: Methods and strategies for studying kinases and substrates. Peck SC. Plant Journal; 45(4):512-522.
Date published:
February 1, 2006
Featured in this article:
Scott Peck.
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CodonO: A new informatics method for measuring synonymous codon usage bias within and across genomes. Wan X-F, Zhou J, Xu D. International Journal of General Systems; 35(1):109-125.
Date published:
February 1, 2006
Featured in this article:
XiuFeng “Henry” Wan,
Dong Xu.
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Transcriptome profiling of Shewanella oneidensis gene expression following exposure to acidic and alkaline pH. Leaphart AB, Thompson DK, Huang K, Alm E, Wan X-F, Arkin A, Brown SD, Wu L, Yan T, Liu X, Wickham GS, Zhou J. Journal of Bacteriology; 188(4):1633-1642.
Date published:
February 1, 2006
Featured in this article:
XiuFeng “Henry” Wan.
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Cryo-electron Microscopy Reveals Conserved and Divergent Features of Gag Packing in Immature Particles of Rous Sarcoma Virus and Human Immunodeficiency Virus. Briggs JAG, Johnson MC, Simon MN, Fuller SD, Vogt VM. Journal of Molecular Biology; 355(1):157-168.
Date published:
January 6, 2006
Featured in this article:
Marc Johnson.
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HIV-1 inactivation by nucleic acid aptamers. Held DM, Kissel JD, Patterson JT, Nickens DG, Burke DH. Frontiers in Bioscience; 11(1 P.1-446):89-112.
Date published:
January 1, 2006
Featured in this article:
Donald Burke-Agüero.
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Expression analyses of Arabidopsis oligopeptide transporters during seed germination, vegetative growth and reproduction. Stacey MG, Osawa H, Patel A, Gassmann W, Stacey G. Planta; 223(2):291-305.
Date published:
January 1, 2006
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Minviluz (Bing) Stacey,
Walter Gassmann,
Gary Stacey.
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ScOPT1 and AtOPT4 function as proton-coupled oligopeptide transporters with broad but distinct substrate specificities. Osawa H, Stacey G, Gassmann W. Biochemical Journal; 393(1):267-275.
Date published:
January 1, 2006
Featured in this article:
Gary Stacey,
Walter Gassmann.
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Reactive oxygen species and temperature stresses: A delicate balance between signaling and destruction. Suzuki N, Mittler R. Physiologia Plantarum; 126(1):45-51.
Date published:
January 1, 2006
Featured in this article:
Ron Mittler.
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Abiotic stress, the field environment and stress combination. Mittler R. Trends in Plant Science; 11(1):15-19.
Date published:
January 1, 2006
Featured in this article:
Ron Mittler.
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Peptide-based phosphoproteomics with immobilized metal ion chromatography. Nühse TS, Peck SC. Methods in molecular biology (Clifton, N.J.); 323:431-436.
Date published:
January 1, 2006
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Scott Peck.
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Patterns of sequence loss and cytosine methylation within a population of newly resynthesized Brassica napus allopolyploids. Lukens LN, Pires JC, Leon E, Vogelzang R, Oslach L, Osborn T. Plant Physiology; 140(1):336-348.
Date published:
January 1, 2006
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.
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Survey sequencing of soybean elucidates the genome structure, composition and identifies novel repeats. Nunberg A, Bedell JA, Budiman MA, Citek RW, Clifton SW, Fulton L, Pape D, Cai Z, Joshi T, Nguyen H, Xu D, Stacey G. Functional Plant Biology; 33(8):765-773.
Date published:
January 1, 2006
Featured in this article:
Trupti Joshi,
Dong Xu,
Gary Stacey.
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Current status and forward looking thoughts on LC/MS metabolomics. Sumner LW. Biotechnology in Agriculture and Forestry; 57:21-32.
Date published:
January 1, 2006
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Lloyd Sumner.
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Establishing reporting standards for metabolomic and metabonomic studies: A call for participation. Fiehn O, Kristal B, Van Ommen B, Sumner LW, Sansone S-A, Taylor C, Hardy N, Kaddurah-Daouk R. OMICS A Journal of Integrative Biology; 10(2):158-163.
Date published:
January 1, 2006
Featured in this article:
Lloyd Sumner.
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Phylogenetic analysis using complete signature information of whole genomes and clustered Neighbour-Joining method. Wu X, Wan X-F, Wu G, Xu D, Lin G. International Journal of Bioinformatics Research and Applications; 2(3):219-248.
Date published:
January 1, 2006
Featured in this article:
XiuFeng “Henry” Wan,
Dong Xu.
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Resources for genetic and genomic studies of Xenopus. Klein SL, Gerhard DS, Wagner L, Richardson P, Schriml LM, Sater AK, Warren WC, McPherson JD. Methods in molecular biology (Clifton, N.J.); 322:1-16.
Date published:
January 1, 2006
Featured in this article:
Wes Warren.
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P2 receptors in health and disease. Weisman GA, Yu N, Liao Z, Gonzaléz F, Erb L, Seye CI. Biotechnology and Genetic Engineering Reviews; 22(1):171-196.
Date published:
January 1, 2006
Featured in this article:
Gary Weisman.
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International Union of Pharmacology LVIII: Update on the P2Y G protein-coupled nucleotide receptors: From molecular mechanisms and pathophysiology to therapy. Abbracchio MP, Burnstock G, Boeynaems J-M, Barnard EA, Boyer JL, Kennedy C, Knight GE, Fumagalli M, Gachet C, Jacobson KA, Weisman GA. Pharmacology Reviews; 58(3):281-341.
Date published:
January 1, 2006
Featured in this article:
Gary Weisman.
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Bioinformatics and its applications in plant biology. Rhee SY, Dickerson J, Xu D. Annual Review of Plant Biology; 57:335-360.
Date published:
January 1, 2006
Featured in this article:
Dong Xu.
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Establishment of an ELISA for the detection of native bovine pregnancy-associated glycoproteins secreted by trophoblast binucleate cells. Green JA, Roberts RM. Methods in molecular medicine; 122:321-330.
Date published:
January 1, 2006
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.
2005
Metabolic engineering of plant cells for biotransformation of hesperedin into neohesperidin, a substrate for production of the low-calorie sweetener and flavor enhancer NHDC. Frydman A, Weisshaus O, Huhman DV, Sumner LW, Bar-Peled M, Lewinsohn E, Fluhr R, Gressel J, Eyal Y. Journal of Agricultural and Food Chemistry; 53(25):9708-9712.
Date published:
December 14, 2005
Featured in this article:
Lloyd Sumner.
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Transactivation of Abl by the Crk II adapter protein requires a PNAY sequence in the Crk C-terminal SH3 domain. Reichman C, Singh K, Liu Y, Singh S, Li H, Fajardo JE, Fiser A, Birge RB. Oncogene; 24(55):8187-8199.
Date published:
December 8, 2005
Featured in this article:
Kamlendra Singh.
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Development of a simplified, economical polyacrylamide gel staining protocol for phosphoproteins. Agrawal GK, Thelen JJ. Proteomics; 5(18):4684-4688.
Date published:
December 1, 2005
Featured in this article:
Jay Thelen.
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Computational methods for remote homolog identification. Wan X-F, Xu D. Current Protein and Peptide Science; 6(6):527-546.
Date published:
December 1, 2005
Featured in this article:
XiuFeng “Henry” Wan,
Dong Xu.
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Agonist-induced phosphorylation and desensitization of the P2Y₂ nucleotide receptor. Flores RV, Hernández-Pérez MG, Aquino E, Garrad RC, Weisman GA, Gonzalez FA. Molecular and Cellular Biochemistry; 280(1-2):35-45.
Date published:
December 1, 2005
Featured in this article:
Gary Weisman.
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P2X₇ nucleotide receptors mediate caspase-8/9/3-dependent apoptosis in rat primary cortical neurons. Kong Q, Wang M, Liao Z, Camden JM, Yu S, Simonyi A, Sun GY, Gonzalez FA, Erb L, Seye CI, Weisman GA. Purinergic Signalling; 1(4):337-347.
Date published:
December 1, 2005
Featured in this article:
Gary Weisman.
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A comparison of the anti-luteolytic activities of recombinant ovine interferon-alpha and -tau in sheep. Green MP, Spate LD, Bixby JA, Ealy AD, Roberts RM. Biology of Reproduction; 73(6):1087-1093.
Date published:
December 1, 2005
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.
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The P2Y₂ nucleotide receptor interacts with αᵥ integrins to activate G₀ and induce cell migration. Bagchi S, Liao Z, Gonzalez FA, Chorna NE, Seye CI, Weisman GA, Erb L. Journal of Biological Chemistry; 280(47):39050-39057.
Date published:
November 25, 2005
Featured in this article:
Gary Weisman.
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Repression of cancer protective genes by 17β-estradiol: Ligand-dependent interaction between human Nrf2 and estrogen receptor α. Ansell PJ, Lo S-C, Newton LG, Espinosa-Nicholas C, Zhang DD, Liu J-H, Hannink M, Lubahn DB. Molecular and Cellular Endocrinology; 243(1-2):27-34.
Date published:
November 24, 2005
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.
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A trans acting ribozyme that phosphorylates exogenous RNA. Saran D, Nickens DG, Burke DH. Biochemistry; 44(45):15007-15016.
Date published:
November 15, 2005
Featured in this article:
Donald Burke-Agüero.
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Design of long oligonucleotide probes for functional gene detection in a microbial community. Chung W-H, Rhee S-K, Wan X-F, Bae J-W, Quan Z-X, Park Y-H. Bioinformatics; 21(22):4092-4100.
Date published:
November 15, 2005
Featured in this article:
XiuFeng “Henry” Wan.
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Enhanced tolerance to environmental stress in transgenic plants expressing the transcriptional coactivator multiprotein bridging factor 1c. Suzuki N, Rizhsky L, Liang H, Shuman J, Shulaev V, Mittler R. Plant Physiology; 139(3):1313-1322.
Date published:
November 11, 2005
Featured in this article:
Ron Mittler.
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The retrovirai capsid domain dictates virion size, morphology, and coassembly of Gag into virus-like particles. Ako-Adjei D, Johnson MC, Vogt VM. Journal of Virology; 79(21):13463-13472.
Date published:
November 1, 2005
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Marc Johnson.
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Time-course development of the Cd2+ hyper-accumulating phenotype in Euglena gracilis. Avilés C, Torres-Márquez ME, Mendoza-Cózatl D, Moreno-Sánchez R. Archives of Microbiology; 184(2):83-92.
Date published:
November 1, 2005
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David Mendoza-Cózatl.
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A two-dimensional electrophoresis proteomic reference map and systematic identification of 1367 proteins from a cell suspension culture of the model legume Medicago truncatula. Lei Z, Elmer AM, Watson BS, Dixon RA, Mendes PJ, Sumner LW. Molecular and Cellular Proteomics; 4(11):1812-1825.
Date published:
November 1, 2005
Featured in this article:
Lloyd Sumner.
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Light and electron microscope immunocytochemical studies of the distribution of pregnancy associated glycoproteins (PAGs) throughout pregnancy in the cow: Possible functional implications. Wooding FBP, Roberts RM, Green JA. Placenta; 26(10):807-827.
Date published:
November 1, 2005
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.
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Visualization of retrovirus budding with correlated light and electron microscopy. Larson DR, Johnson MC, Webb WW, Vogt VM. Proceedings of the National Academy of Sciences of the United States of America; 102(43):15453-15458.
Date published:
October 25, 2005
Featured in this article:
Marc Johnson.
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The zinc-finger protein Zat12 plays a central role in reactive oxygen and abiotic stress signaling in Arabidopsis. Davletova S, Schlauch K, Coutu J, Mittler R. Plant Physiology; 139(2):847-856.
Date published:
October 11, 2005
Featured in this article:
Ron Mittler.
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Natural variation in the Arabidopsis response to the avirulence gene hopPsyA uncouples the hypersensitive response from disease resistance. Gassmann W. Molecular Plant-Microbe Interactions; 18(10):1054-1060.
Date published:
October 1, 2005
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Walter Gassmann.
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Conserved solvent and side-chain interactions in the 1.35 Å structure of the Kelch domain of Keap1. Beamer LJ, Li X, Bottoms CA, Hannink M. Acta Crystallographica Section D: Biological Crystallography; 61(10):1335-1342.
Date published:
October 1, 2005
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Expression of the legume symbiotic lectin genes psl and gs52 promotes rhizobial colonization of roots in rice. Sreevidya VS, Hernandez-Oane RJ, So RB, Sullia SB, Stacey G, Ladha JK, Reddy PM. Plant Science; 169(4):726-736.
Date published:
October 1, 2005
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Gary Stacey.
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Neuroprotective mechanisms of curcumin against cerebral ischemia-induced neuronal apoptosis and behavioral deficits. Wang Q, Sun AY, Simonyi A, Jensen MD, Shelat PB, Rottinghaus GE, MacDonald RS, Miller DK, Lubahn DE, Weisman GA, Sun GY. Journal of Neuroscience Research; 82(1):138-148.
Date published:
October 1, 2005
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Gary Weisman.
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Effects of D-glucose concentration, D-fructose, and inhibitors of enzymes of the pentose phosphate pathway on the development and sex ratio of bovine blastocysts. Kimura K, Spate LD, Green MP, Roberts RM. Molecular Reproduction and Development; 72(2):201-207.
Date published:
October 1, 2005
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The bacterial-like lactate shuttle components from heterotrophic Euglena gracilis. Jasso-Chávez R, García-Cano I, Marín-Hernández A, Mendoza-Cózatl D, Rendón JL, Moreno-Sánchez R. Biochimica et Biophysica Acta - Bioenergetics; 1709(2):181-190.
Date published:
September 5, 2005
Featured in this article:
David Mendoza-Cózatl.
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Distinct signaling pathways for induction of type II NOS by IFNγ and LPS in BV-2 microglial cells. Shen S, Yu S, Binek J, Chalimoniuk M, Zhang X, Lo S-C, Hannink M, Wu J, Fritsche K, Donato R, Sun GY. Neurochemistry International; 47(4):298-307.
Date published:
September 1, 2005
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.
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Sulfur assimilation and glutathione metabolism under cadmium stress in yeast, protists and plants. Mendoza-Cózatl D, Loza-Tavera H, Hernández-Navarro A, Moreno-Sánchez R. FEMS Microbiology Reviews; 29(4):653-671.
Date published:
September 1, 2005
Featured in this article:
David Mendoza-Cózatl.
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Profiling of gender-regulated gene transcripts in the filarial nematode Brugia malayi by cDNA oligonucleotide array analysis. Li B-W, Rush AC, Crosby SD, Warren WC, Williams SA, Mitreva M, Weil GJ. Molecular and Biochemical Parasitology; 143(1):49-57.
Date published:
September 1, 2005
Featured in this article:
Wes Warren.
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Ubiquitination of Keap1, a BTB-Kelch substrate adaptor protein for Cul3, targets Keap1 for degradation by a proteasome-independent pathway. Zhang DD, Lo S-C, Sun Z, Habib GM, Lieberman MW, Hannink M. Journal of Biological Chemistry; 280(34):30091-30099.
Date published:
August 26, 2005
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Low-magnesium, trans-cleavage activity by type III, tertiary stabilized hammerhead ribozymes with stem 1 discontinuities. Burke DH, Travis Greathouse S. BMC Biochemistry; 6:14.
Date published:
August 12, 2005
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Donald Burke-Agüero.
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Whole genome phylogeny based on clustered signature string composition. Wu X, Lin G, Wan X-F, Xu D. 2005 IEEE Computational Systems Bioinformatics Conference, Workshops and Poster Abstracts; 53-54.
Date published:
August 8, 2005
Featured in this article:
XiuFeng “Henry” Wan,
Dong Xu.
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Repeated evolution of net venation and fleshy fruits among monocots in shaded habitats confirms a priori predictions: Evidence from an ndhF phylogeny. Givnish TJ, Pires JC, Graham SW, McPherson MA, Prince LM, Patterson TB, Rai HS, Roalson EH, Evans TM, Hahn WJ, Millam RC, Meerow AW, Molvray M, Kores PJ, O'Brien HE, Hall JC, Kress WJ, Sytsma KJ. Proceedings of the Royal Society B: Biological Sciences; 272(1571):1481-1490.
Date published:
July 22, 2005
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Cleavage site selection within a folded substrate by the ATP-dependent Lon protease. Ondrovičová G, Liu T, Singh K, Tian B, Li H, Gakh O, Perečko D, Janata J, Granot Z, Orly J, Kutejová E, Suzuki CK. Journal of Biological Chemistry; 280(26):25103-25110.
Date published:
July 1, 2005
Featured in this article:
Kamlendra Singh.
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Increased cuticular wax accumulation and enhanced drought tolerance in transgenic alfalfa by overexpression of a transcription factor gene. Wang Z-Y, Zhang J-Y, Broeckling C, Blancaflor E, Sledge M, Sumner L. Molecular Breeding for The Genetic Improvement of Forage Crops and Turf: Proceedings of the 4th International Symposium on The Molecular Breeding of Forage and Turf, a Satellite Workshop of the XXth International Grassland Congress, July 2005, Aberystwyth, Wales; 223.
Date published:
July 1, 2005
Featured in this article:
Lloyd Sumner.
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Intrinsic terminator prediction and its application in synechococcus sp. WH8102. Wan X-F, Xu D. Journal of Computer Science and Technology; 20(4):465-482.
Date published:
July 1, 2005
Featured in this article:
XiuFeng “Henry” Wan,
Dong Xu.
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R gene expression induced by a type-III effector triggers disease resistance in rice. Gu K, Yang B, Tian D, Wu L, Wang D, Sreekala C, Yang F, Chu Z, Wang G-L, White FF, Yin Z. Nature; 435(7045):1122-1125.
Date published:
June 23, 2005
Featured in this article:
Bing Yang.
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Toward electronic conductance characterization of DNA nucleotide bases. Krstić PS, Wells JC, Fuentes-Cabrera M, Xu D, Lee JW. Solid State Phenomena; 121-123(PART 2):1387-1390.
Date published:
June 9, 2005
Featured in this article:
Dong Xu.
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Contribution of polar residues of the J-helix in the 3′-5′ exonuclease activity of Escherichia coli DNA polymerase I (Klenow fragment): Q677 regulates the removal of terminal mismatch. Singh K, Modak MJ. Biochemistry; 44(22):8101-8110.
Date published:
June 7, 2005
Featured in this article:
Kamlendra Singh.
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Erratum: Detection of protein-protein interactions in plants using bimolecular fluorescence complementation (The Plant Journal (November 2004) 40:3 (419-427)). Bracha-Drori K, Shichrur K, Katz A, Oliva M, Angelovici R, Yalovsky S, Ohad N. Plant Journal; 42(5):781.
Date published:
June 1, 2005
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Ruthie Angelovici.
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Electrophysiological characterization of the Arabidopsis avrRpt2-specific hypersensitive response in the absence of other bacterial signals. Pike SM, Zhang X-C, Gassmann W. Plant Physiology; 138(2):1009-1017.
Date published:
June 1, 2005
Featured in this article:
Walter Gassmann.
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Update on proteomics in Arabidopsis. Where do we go from here?. Peck SC. Plant Physiology; 138(2):591-599.
Date published:
June 1, 2005
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Scott Peck.
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Assessment of mumps virus growth on various continuous cell lines by virological, immunological, molecular and morphological investigations. Afzal MA, Dussupt V, Minor PD, Pipkin PA, Fleck R, Hockley DJ, Stacey GN. Journal of Virological Methods; 126(1-2):149-156.
Date published:
June 1, 2005
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Gary Stacey.
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Overexpression of WXP1, a putative Medicago truncatula AP2 domain-containing transcription factor gene, increases cuticular wax accumulation and enhances drought tolerance in transgenic alfalfa (Medicago sativa). Zhang J-Y, Broeckling CD, Blancaflor EB, Sledge MK, Sumner LW, Wang Z-Y. Plant Journal; 42(5):689-707.
Date published:
June 1, 2005
Featured in this article:
Lloyd Sumner.
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Genetic characterization of H5N1 avian influenza viruses isolated in southern China during the 2003-04 avian influenza outbreaks: Brief report. Wan X-F, Ren T, Luo K-J, Liao M, Zhang G-H, Chen J-D, Cao W-S, Li Y, Jin N-Y, Xu D, Xin C-A. Archives of Virology; 150(6):1257-1266.
Date published:
June 1, 2005
Featured in this article:
XiuFeng “Henry” Wan,
Dong Xu.
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P2Y₂ nucleotide receptor up-regulation in submandibular gland cells from the NOD.B10 mouse model of Sjögren’s syndrome. Schrader AM, Camden JM, Weisman GA. Archives of Oral Biology; 50(6):533-540.
Date published:
June 1, 2005
Featured in this article:
Gary Weisman.
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Endocytosis mechanism of P2Y₂ nucleotide receptor tagged with green fluorescent protein: Clathrin and actin cytoskeleton dependence. Tulapurkar ME, Schäfer R, Hanck T, Flores RV, Weisman GA, González FA, Reiser G. Cellular and Molecular Life Sciences; 62(12):1388-1399.
Date published:
June 1, 2005
Featured in this article:
Gary Weisman.
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Characterization of the hrpF pathogenicity peninsula of Xanthomonas oryzae pv. oryzae. Sugio A, Yang B, White FF. Molecular Plant-Microbe Interactions; 18(6):546-554.
Date published:
June 1, 2005
Featured in this article:
Bing Yang.
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Biomarker metabolites capturing the metabolite variance present in a rice plant developmental period. Tarpley L, Duran AL, Kebrom TH, Sumner LW. BMC Plant Biology; 5:8.
Date published:
May 31, 2005
Featured in this article:
Lloyd Sumner.
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P2Y₂ nucleotide receptors enhance α-secretase-dependent amyloid precursor protein processing. Camden JM, Schrader AM, Camden RE, González FA, Erb L, Seye CI, Weisman GA. Journal of Biological Chemistry; 280(19):18696-18702.
Date published:
May 13, 2005
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Gary Weisman.
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A non-sequence-apecific requirement for SMN protein activity: The role of aminoglycosides in inducing elevated SMN protein levels. Wolstencroft EC, Mattis V, Bajer AA, Young PJ, Lorson CL. Human Molecular Genetics; 14(9):1199-1210.
Date published:
May 1, 2005
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Christian Lorson.
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Proteomic analysis of soybean root hairs after infection by Bradyrhizobium japonicum. Wan J, Torres M, Ganapathy A, Thelen J, DaGue BB, Mooney B, Xu D, Stacey G. Molecular Plant-Microbe Interactions; 18(5):458-467.
Date published:
May 1, 2005
Featured in this article:
Jay Thelen,
Dong Xu,
Gary Stacey.
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Embryo culture conditions: What embryos like best. Roberts RM. Endocrinology; 146(5):2140-2141.
Date published:
May 1, 2005
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.
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The p38α/β MAPK functions as a molecular switch to activate the quiescent satellite cell. Jones NC, Tyner KJ, Nibarger L, Stanley HM, Cornelison DDW, Fedorov YV, Olwin BB. Journal of Cell Biology; 169(1):105-116.
Date published:
April 11, 2005
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D Cornelison.
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Generation and annotation of the DNA sequences of human chromosomes 2 and 4. Hillier LW, Graves TA, Fulton RS, Fulton LA, Pepin KH, Minx P, Wagner-McPherson C, Layman D, Wylie K, Sekhon M, Becker MC, Fewell GA, Delehaunty KD, Miner TL, Nash WE, Kremitzki C, Oddy L, Du H, Sun H, Bradshaw-Cordum H, Ali J, Carter J, Cordes M, Harris A, Isak A, Van Brunt A, Nguyen C, Du F, Courtney L, Kalicki J, Ozersky P, Abbott S, Armstrong J, Belter EA, Caruso L, Cedroni M, Cotton M, Davidson T, Desai A, Elliott G, Erb T, Fronick C, Gaige T, Haakenson W, Haglund K, Holmes A, Harkins R, Kim K, Kruchowski SS, Strong CM, Grewal N, Goyea E, Hou S, Levy A, Martinka S, Mead K, McLellan MD, Meyer R, Randall-Maher J, Tomlinson C, Dauphin-Kohlberg S, Kozlowicz-Reilly A, Shah N, Swearengen-Shahid S, Snider J, Strong JT, Thompson J, Yoakum M, Leonard S, Pearman C, Trani L, Radionenko M, Waligorski JE, Wang C, Rock SM, Tin-Wollam A-M, Maupin R, Latreille P, Wendl MC, Yang S-P, Pohl C, Wallis JW, Spieth J, Bieri TA, Berkowicz N, Nelson JO, Osborne J, Ding L, Meyer R, Sabo A, Shotland Y, Sinha P, Wohldmann PE, Cook LL, Hickenbotham MT, Eldred J, Williams D, Jones TA, She X, Ciccarelli FD, Izaurralde E, Taylor J, Schmutz J, Myers RM, Cox DR, Huang X, McPherson JD, Mardis ER, Clifton SW, Warren WC, Chnwalla AT, Eddy SR, Marra MA, Ovcharenko I, Furey TS, Miller W, Eichler EE, Bork P, Suyama M, Torrents D, Waterston RH, Wilson RK. Nature; 434(7034):724-731.
Date published:
April 7, 2005
Featured in this article:
Wes Warren.
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Coordinate regulation of basal and cyclic 5′-adenosine monophosphate (cAMP)-activated expression of human chorionic gonadotropin-α by Ets-2 and cAMP-responsive element binding protein. Ghosh D, Sachdev S, Hannink M, Roberts RM. Molecular Endocrinology; 19(4):1049-1066.
Date published:
April 1, 2005
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Minute virus of mice small non-structural protein NS2 localizes within, but is not required for the formation of, Smn-associated autonomous parvovirus-associated replication bodies. Young PJ, Newman A, Jensen KT, Burger LR, Pintel DJ, Lorson CL. Journal of General Virology; 86(4):1009-1014.
Date published:
April 1, 2005
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Christian Lorson.
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Modulation of endothelial cell migration by extracellular nucleotides. Involvement of focal adhesion kinase and phosphatidylinositol 3-kinase-mediated pathways. Kaczmarek E, Erb L, Koziak K, Jarzyna R, Wink MR, Guckelberger O, Blusztajn JK, Trinkaus-Randall V, Weisman GA, Robson SC. Thrombosis and Haemostasis; 93(4):735-742.
Date published:
April 1, 2005
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Gary Weisman.
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Low O2 tensions and the prevention of differentiation of hES cells. Ezashi T, Das P, Roberts RM. Proceedings of the National Academy of Sciences of the United States of America; 102(13):4783-4788.
Date published:
March 29, 2005
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.
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Pants, a new type of clothes for your legs. Sean. Brand New Inventions That Never Existed Before; 23(11):19-63.
Date published:
March 26, 2005
Featured in this article:
Sean Franco.
Quantification of saponins in aerial and subterranean tissues of Medicago truncatula. Huhman DV, Berhow MA, Sumner LW. Journal of Agricultural and Food Chemistry; 53(6):1914-1920.
Date published:
March 23, 2005
Featured in this article:
Lloyd Sumner.
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The establishment of an ELISA for the detection of pregnancy-associated glycoproteins (PAGs) in the serum of pregnant cows and heifers. Green JA, Parks TE, Avalle MP, Telugu BP, McLain AL, Peterson AJ, McMillan W, Mathialagan N, Hook RR, Xie S, Roberts RM. Theriogenology; 63(5):1481-1503.
Date published:
March 15, 2005
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The C-terminal half of TSG101 blocks rous sarcoma virus budding and sequesters gag into unique nonendosomal structures. Johnson MC, Spidel JL, Ako-Adjei D, Wills JW, Vogt VM. Journal of Virology; 79(6):3775-3786.
Date published:
March 1, 2005
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Marc Johnson.
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Genomics-based selection and functional characterization of triterpene glycosyltransferases from the model legume Medicago truncatula. Achnine L, Huhman DV, Farag MA, Sumner LW, Blount JW, Dixon RA. Plant Journal; 41(6):875-887.
Date published:
March 1, 2005
Featured in this article:
Lloyd Sumner.
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Methyl jasmonate and yeast elicitor induce differential transcriptional and metabolic re-programming in cell suspension cultures of the model legume Medicago truncatula. Suzuki H, Reddy MSS, Naoumkina M, Aziz N, May GD, Huhman DV, Sumner LW, Blount JW, Mendes P, Dixon RA. Planta; 220(5):696-707.
Date published:
March 1, 2005
Featured in this article:
Lloyd Sumner.
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Proteomic characterization of A triton-insoluble fraction from chloroplasts defines A novel group of proteins associated with macromolecular structures. Phinney BS, Thelen JJ. Journal of Proteome Research; 4(2):497-506.
Date published:
March 1, 2005
Featured in this article:
Jay Thelen.
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Understanding protein dispensability through machine-learning analysis of high-throughput data. Chen Y, Xu D. Bioinformatics; 21(5):575-581.
Date published:
March 1, 2005
Featured in this article:
Dong Xu.
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Erratum: Sequence and comparative analysis of the chicken genome provide unique perspective on vertebrate evolution (Nature (2004) 432 (695-716)). Hillier LW, Miller W, Birney E, Warren W, Hardison RC, Ponting CP, Bork P, Burt DW, Groenen MAM, Delany ME, Dodgson JB, Chinwalla AT, Cliften PF, Clifton SW, Delehaunty KD, Fronick C, Fulton RS, Graves TA, Kremitzki C, Layman D, Magrini V, McPherson JD, Miner TL, Minx P, Nash WE, Nhan MN, Nelson JO, Oddy LG, Pohl CS, Randall-Maher J, Smith SM, Wallis JW, Yang S-P, Romanov MN, Rondelli CM, Paton B, Smith J, Morrice D, Daniels L, Tempest HG, Robertson L, Masabanda JS, Griffin DK, Vignal A, Fillon V, Jacobbson L, Kerje S, Andersson L, Crooijmans RPM, Aerts J, van der Poel JJ, Ellegren H, Caldwell RB, Hubbard SJ, Grafham DV, Kierzek AM, McLaren SR, Overton IM, Arakawa H, Beattie KJ, Bezzubov Y, Boardman PE, Bonfield JK, Croning MDR, Davies RM, Francis MD, Humphray SJ, Scott CE, Taylor RG, Tickle C, Brown WRA, Rogers J, Buerstedde J-M, Wilson SA, Stubbs L, Ovcharenko I, Gordon L, Lucas S, Miller MM, Inoko H, Shiina T, Kauman J, Salomonsen J, Skjoedt K, Wong GK-S, Wang J, Liu B, Wang J, Yu J, Yang H, Nefedov M, Koriabine M, Dejong PJ, Goodstadt L, Webber C, Dickens NJ, Letunic I, Suyama M, Torrents D, von Mering C, Zdobnov EM, Makova K, Nekrutenko A, Elnitski L, Eswara P, King DC, Yang S, Tyekucheva S, Radakrishnan A, Harris RS, Chiaromonte F, Taylor J, He J, Rijnkels M, Griffiths-Jones S, Ureta-Vidal A, Hoffman MM, Severin J, Searle SMJ, Law AS, Speed D, Waddington D, Cheng Z, Tuzun E, Eichler E, Bao Z, Flicek P, Shteynberg DD, Brent MR, Bye JM, Huckle EJ, Chatterji S, Dewey C, Pachter L, Kouranov A, Mourelatos Z, Hatzigeorgiou AG, Paterson AH, Ivarie R, Brandstrom M, Axelsson E, Backstrom N, Berlin S, Webster MT, Pourquie O, Reymond A, Ucla C, Antonarakis SE, Long M, Emerson JJ, Betrán E, Dupanloup I, Kaessmann H, Hinrichs AS, Bejerano G, Furey TS, Harte RA, Raney B, Siepel A, James Kent W, Hausler D Eyras E, Castelo R, Abril JF, Castellano S, Camara F, Parra G, Guigo R, Bourque G, Tesler G, Pevzner PA, Smit A, Fulton LA, Mardis ER, Wilson RK. Nature; 433(7027):777.
Date published:
February 17, 2005
Featured in this article:
Wes Warren.
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The evolution of the Sin1 gene product, a little known protein implicated in stress responses and type I interferon signaling in vertebrates. Wang S-Z, Michael Roberts R. BMC Evolutionary Biology; 5.
Date published:
February 7, 2005
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.
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Rapid concerted evolution of nuclear ribosomal DNA in two tragopogon allopolyploids of recent and recurrent origin. Kovarik A, Pires JC, Leitch AR, Lim KY, Sherwood AM, Matyasek R, Rocca J, Soltis DE, Soltis PS. Genetics; 169(2):931-944.
Date published:
February 1, 2005
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.
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Erratum: High-throughput peptide mass fingerprinting of soybean seed proteins: Automated workflow and utility of UniGene expressed sequence tag databases for protein identification (Phytochemistry (2004) 65 (1733-1744) DOI: 10.1016/j.phytochem.2004.04.011). Mooney B, Thelen JJ. Phytochemistry; 66(3):383.
Date published:
February 1, 2005
Featured in this article:
Jay Thelen.
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Mechanisms for inhibition of P2 receptors signaling in neural cells. González FA, Weisman GA, Erb L, Seye CI, Sun GY, Velázquez B, Hernández-Pérez M, Chorna NE. Molecular Neurobiology; 31(1-3):65-79.
Date published:
February 1, 2005
Featured in this article:
Gary Weisman.
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Molecular determinants of P2Y₂ nucleotide receptor function: Implications for proliferative and inflammatory pathways in astrocytes. Weisman GA, Wang M, Kong Q, Chorna NE, Neary JT, Sun GY, González FA, Seye CI, Erb L. Molecular Neurobiology; 31(1-3):169-183.
Date published:
February 1, 2005
Featured in this article:
Gary Weisman.
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Phospholipase A₂ in astrocytes: Responses to oxidative stress, inflammation, and G protein-coupled receptor agonists. Sung GY, Xu J, Jensen MD, Yu S, Wood WG, González FA, Simonyi AY, Sun AY, Weisman GA. Molecular Neurobiology; 31(1-3):27-41.
Date published:
February 1, 2005
Featured in this article:
Gary Weisman.
Avoidance of host recognition by alterations in the repetitive and C-terminal regions of AvrXa7, a type III effector of Xanthomonas oryzae pv. oryzae. Yang B, Sugio A, White FF. Molecular Plant-Microbe Interactions; 18(2):142-149.
Date published:
February 1, 2005
Featured in this article:
Bing Yang.
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Shoot branching. McSteen P, Leyser O. Annual Review of Plant Biology; 56:353-374.
Date published:
January 17, 2005
Featured in this article:
Paula McSteen.
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Profiles and Fuzzy K-Nearest Neighbor Algorithm for protein secondary structure prediction. Bondugula R, Duzlevski O, Xu D. Series on Advances in Bioinformatics and Computational Biology; 1:85-94.
Date published:
January 17, 2005
Featured in this article:
Dong Xu.
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Cd 2+ transport and storage in the chloroplast of Euglena gracilis. Mendoza-Cózatl DG, Moreno-Sánchez R. Biochimica et Biophysica Acta - Bioenergetics; 1706(1-2):88-97.
Date published:
January 7, 2005
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David Mendoza-Cózatl.
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Genome-scale protein function prediction in yeast saccharomyces cerevisiae through integrating multiple sources of high- Throughput data. Chen Y, Xu D. Proceedings of the Pacific Symposium on Biocomputing 2005, PSB 2005; 471-482.
Date published:
January 4, 2005
Featured in this article:
Dong Xu.
Cytosolic ascorbate peroxidase 1 is a central component of the reactive oxygen gene network of Arabidopsis. Davletova S, Rizhsky L, Liang H, Shengqiang Z, Oliver DJ, Coutu J, Shulaev V, Schlauch K, Mittler R. Plant Cell; 17(1):268-281.
Date published:
January 3, 2005
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Ron Mittler.
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Preparation of samples for comparative studies of plant chromosomes using in situ hybridization methods. Walling JG, Pires JC, Jackson SA. Methods in Enzymology; 395:443-460.
Date published:
January 1, 2005
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.
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Cellular function prediction and biological pathway discovery in Arabidopsis thaliana using microarray data. Joshi T, Chen Y, Alexandrov NN, Xu D. International Journal of Bioinformatics Research and Applications; 1(3):335-350.
Date published:
January 1, 2005
Featured in this article:
Trupti Joshi,
Dong Xu.
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Transgenic expression of the soybean apyrase in Lotus japonicus enhances nodulation. McAlvin CB, Stacey G. Plant Physiology; 137(4):1456-1462.
Date published:
January 1, 2005
Featured in this article:
Gary Stacey.
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“Translational” legume biology. Models to crops. Stacey G, VandenBosch K. Plant Physiology; 137(4):1173.
Date published:
January 1, 2005
Featured in this article:
Gary Stacey.
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Loss-of-function mutations in chitin responsive genes show increased susceptibility to the powdery mildew pathogen Erysiphe cichoracearum. Ramonell K, Berrocal-Lobo M, Koh S, Wan J, Edwards H, Stacey G, Somerville S. Plant Physiology; 138(2):1027-1036.
Date published:
January 1, 2005
Featured in this article:
Gary Stacey.
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Metabolic profiling of Medicago truncatula cell cultures reveals the effects of biotic and abiotic elicitors on metabolism. Broeckling CD, Huhman DV, Farag MA, Smith JT, May GD, Mendes P, Dixon RA, Sumner LW. Journal of Experimental Botany; 56(410):323-336.
Date published:
January 1, 2005
Featured in this article:
Lloyd Sumner.
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A systematic proteomic study of seed filling in soybean. Establishment of high-resolution two-dimensional reference maps, expression profiles, and an interactive proteome database. Hajduch M, Ganapathy A, Stein JW, Thelen JJ. Plant Physiology; 137(4):1397-1419.
Date published:
January 1, 2005
Featured in this article:
Jay Thelen.
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The recently deorphanized GPR80 (GPR99) proposed to be the P2Y ₁₅ receptor is not a genuine P2Y receptor. Abbracchio MP, Burnstock G, Boeynaems J-M, Barnard EA, Boyer JL, Kennedy C, Miras-Portugal MT, King BF, Gachet C, Jacobson KA, Weisman GA. Trends in Pharmacological Sciences; 26(1):8-9.
Date published:
January 1, 2005
Featured in this article:
Gary Weisman.
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P2Y₂ nucleotide receptor interaction with αᵥ integrin mediates astrocyte migration. Wang M, Kong Q, Gonzalez FA, Sun G, Erb L, Seye C, Weisman GA. Journal of Neurochemistry; 95(3):630-640.
Date published:
January 1, 2005
Featured in this article:
Gary Weisman.
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More reliable protein NMR peak assignment via improved 2-interval scheduling. Chen Z-Z, Lin G, Rizzi R, Wen J, Xu D, Xu Y, Jiang T. Journal of Computational Biology; 12(2):129-146.
Date published:
January 1, 2005
Featured in this article:
Dong Xu.
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2004
Crystal structure of the Kelch domain of human Keap1. Li X, Zhang D, Hannink M, Beamer LJ. Journal of Biological Chemistry; 279(52):54750-54758.
Date published:
December 24, 2004
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.
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A physical map of the chicken genome. Wallis JW, Aerts J, Groenen MAM, Crooljmans RPMA, Layman D, Graves TA, Scheer DE, Kremitzki C, Fedele MJ, Mudd NK, Cardenas M, Higginbotham J, Carter J, McGrane R, Gaige T, Mead K, Walker J, Albracht D, Davito J, Yang S-P, Leong S, Chinwalla A, Sekhon M, Wylie K, Dodgson J, Romanov MN, Cheng H, De Jong PJ, Osoegawa K, Nefedov M, Zhang H, McPherson JD, Krzywinski M, Scheln J, Hillier L, Mardis ER, Wilson RK, Warren WC. Nature; 432(7018):761-764.
Date published:
December 9, 2004
Featured in this article:
Wes Warren.
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A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms. Wong GK-S, Liu B, Wang J, Zhang Y, Yang X, Zhang Z, Meng Q, Zhou J, Li D, Zhang J, Ni P, Li S, Ran L, Li H, Zhang J, Li R, Li S, Zheng H, Lin W, Li G, Wang X, Zhao W, Li J, Ye C, Dai M, Ruan J, Zhou Y, Li Y, He X, Zhang Y, Wang J, Huang X, Tong W, Chen J, Ye J, Chen C, Wei N, Li G, Dong L, Lan F, Sun Y, Zhang Z, Yang Z, Yu Y, Huang Y, He D, Xi Y, Wei D, Qi Q, Li W, Shi J, Wang M, Xie F, Wang J, Zhang X, Wang P, Zhao Y, Li N, Yang N, Dong W, Hu S, Zeng C, Zheng W, Hao B, Hillier LW, Yang S-P, Warren WC, Wilson RK, Brandström M, Ellegren H, Crooijmans RPMA, van der Poel JJ, Bovenhuis H, Groenen MAM, Ovcharenko I, Gordon L, Stubbs L, Lucas S, Glavina T, Aerts A, Kaiser P, Rothwell L, Young JR, Rogers S, Walker BA, van Hateren A, Kaufman J, Bumstead N, Lamont SJ, Zhou H, Hocking PM, Morrice D, de Koning D-J, Law A, Bartley N, Burt DW, Hunt H, Cheng HH, Gunnarsson U, Wahlberg P, Andersson L, Kindlund E, Tammi MT, Andersson B, Webber C, Ponting CP, Overton IM, Boardman PE, Tang H, Hubbard SJ, Wilson SA, Yu J, Wang J, Yang H. Nature; 432(7018):717-722.
Date published:
December 9, 2004
Featured in this article:
Wes Warren.
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Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. Hillier LW, Miller W, Birney E, Warren W, Hardison RC, Ponting CP, Bork P, Burt DW, Groenen MAM, Delany ME, Dodgson JB, Chinwalla AT, Cliften PF, Clifton SW, Delehaunty KD, Fronick C, Fulton RS, Graves TA, Kremitzki C, Layman D, Magrini V, McPherson JD, Miner TL, Minx P, Nash WE, Nhan MN, Nelson JO, Oddy LG, Pohl CS, Randall-Maher J, Smith SM, Wallis JW, Yang S-P, Romanov MN, Rondelli CM, Paton B, Smith J, Morrice D, Daniels L, Tempest HG, Robertson L, Masabanda JS, Griffin DK, Vignal A, Fillon V, Jacobbson L, Kerje S, Andersson L, Crooijmans RPM, Aerts J, van der Poel JJ, Ellegren H, Caldwell RB, Hubbard SJ, Grafham DV, Kierzek AM, McLaren SR, Overton IM, Arakawa H, Beattie KJ, Bezzubov Y, Boardman PE, Bonfield JK, Croning MDR, Davies RM, Francis MD, Humphray SJ, Scott CE, Taylor RG, Tickle C, Brown WRA, Rogers J, Buerstedde J-M, Wilson SA, Stubbs L, Ovcharenko I, Gordon L, Lucas S, Miller MM, Inoko H, Shiina T, Kauman J, Salomonsen J, Skjoedt K, Wong GK-S, Wang J, Liu B, Wang J, Yu J, Yang H, Nefedov M, Koriabine M, Dejong PJ, Goodstadt L, Webber C, Dickens NJ, Letunic I, Suyama M, Torrents D, von Mering C, Zdobnov EM, Makova K, Nekrutenko A, Elnitski L, Eswara P, King DC, Yang S, Tyekucheva S, Radakrishnan A, Harris RS, Chiaromonte F, Taylor J, He J, Rijnkels M, Griffiths-Jones S, Ureta-Vidal A, Hoffman MM, Severin J, Searle SMJ, Law AS, Speed D, Waddington D, Cheng Z, Tuzun E, Eichler E, Bao Z, Flicek P, Shteynberg DD, Brent MR, Bye JM, Huckle EJ, Chatterji S, Dewey C, Pachter L, Kouranov A, Mourelatos Z, Hatzigeorgiou AG, Paterson AH, Ivarie R, Brandstrom M, Axelsson E, Backstrom N, Berlin S, Webster MT, Pourquie O, Reymond A, Ucla C, Antonarakis SE, Long M, Emerson JJ, Betrán E, Dupanloup I, Kaessmann H, Hinrichs AS, Bejerano G, Furey TS, Harte RA, Raney B, Siepel A, James Kent W, Hausler D Eyras E, Castelo R, Abril JF, Castellano S, Camara F, Parra G, Guigo R, Bourque G, Tesler G, Pevzner PA, Smit A, Fulton LA, Mardis ER, Wilson RK. Nature; 432(7018):695-716.
Date published:
December 9, 2004
Featured in this article:
Wes Warren.
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The mammalian Zip5 protein is a zinc transporter that localizes to the basolateral surface of polarized cells. Wang F, Kim B-E, Petris MJ, Eide DJ. Journal of Biological Chemistry; 279(49):51433-51441.
Date published:
December 3, 2004
Featured in this article:
Michael Petris.
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Artificial tertiary motifs stabilize trans-cleaving hammerhead ribozymes under conditions of submillimolar divalent ions and high temperatures. Saksmerprome V, Roychowdhury-Saha M, Jayasena S, Khvorova A, Burke DH. RNA; 10(12):1916-1924.
Date published:
December 1, 2004
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Donald Burke-Agüero.
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Keap1 is a redox-regulated substrate adaptor protein for a Cul3-dependent ubiquitin ligase complex. Zhang DD, Lo S-C, Cross JV, Templeton DJ, Hannink M. Molecular and Cellular Biology; 24(24):10941-10953.
Date published:
December 1, 2004
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.
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Crystallization and initial crystallographic analysis of the Kelch domain from human Keap1. Li X, Zhang D, Hannink M, Beamer LJ. Acta Crystallographica Section D: Biological Crystallography; 60(12 II):2346-2348.
Date published:
December 1, 2004
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Apoplastic extracts from a transgenic wheat line exhibiting lesion-mimic phenotype have multiple pathogenesis-related proteins that are antifungal. Anand A, Lei Z, Sumner LW, Mysore KS, Arakane Y, Bockus WW, Muthukrishnan S. Molecular Plant-Microbe Interactions; 17(12):1306-1317.
Date published:
December 1, 2004
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Lloyd Sumner.
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A proposed framework for the description of plant metabolomics experiments and their results. Jenkins H, Hardy N, Beckmann M, Draper J, Smith AR, Taylor J, Fiehn O, Goodacre R, Bino RJ, Hall R, Kopka J, Lane GA, Lange BM, Liu JR, Mendes P, Nikolau BJ, Oliver SG, Paton NW, Rhee S, Roessner-Tunali U, Saito K, Smedsgaard J, Sumner LW, Wang T, Walsh S, Wurtele ES, Kell DB. Nature Biotechnology; 22(12):1601-1606.
Date published:
December 1, 2004
Featured in this article:
Lloyd Sumner.
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Transcriptomic and proteomic characterization of the Fur modulon in the metal-reducing bacterium Shewanella oneidensis. Wan X-F, VerBerkmoes NC, McCue LA, Stanek D, Connelly H, Hauser LJ, Wu L, Liu X, Yan T, Leaphart A, Hettich RL, Zhou J, Thompson DK. Journal of Bacteriology; 186(24):8385-8400.
Date published:
December 1, 2004
Featured in this article:
XiuFeng “Henry” Wan.
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Comparison of genome degradation in Paratyphi A and Typhi, human-restricted serovars of Salmonella enterica that cause typhoid. McClelland M, Sanderson KE, Clifton SW, Latreille P, Porwollik S, Sabo A, Meyer R, Bieri T, Ozersky P, McLellan M, Harkins CR, Wang C, Nguyen C, Berghoff A, Elliott G, Kohlberg S, Strong C, Du F, Carter J, Kremizki C, Layman D, Leonard S, Sun H, Fulton L, Nash W, Miner T, Minx P, Delehaunty K, Fronick C, Magrini V, Nhan M, Warren W, Florea L, Spieth J, Wilson RK. Nature Genetics; 36(12):1268-1274.
Date published:
December 1, 2004
Featured in this article:
Wes Warren.
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Interaction of stress-activated protein kinase-interacting protein-1 with the interferon receptor subunit IFNAR2 in uterine endometrium. Wang S-Z, Roberts RM. Endocrinology; 145(12):5820-5831.
Date published:
December 1, 2004
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.
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Cisplatin stabilizes a multimeric complex of the human Ctr1 copper transporter: Requirement for the extracellular methionine-rich clusters. Guo Y, Smith K, Petris MJ. Journal of Biological Chemistry; 279(45):46393-46399.
Date published:
November 5, 2004
Featured in this article:
Michael Petris.
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Protein databases on the internet. Xu D, Xu Y. Current protocols in molecular biology; 19:Unit 19.4.
Date published:
November 4, 2004
Featured in this article:
Dong Xu.
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Detection of protein-protein interactions in plants using bimolecular fluorescence complementation. Bracha-Drori K, Shichrur K, Katz A, Oliva M, Angelovici R, Yalovsky S, Ohad N. Plant Journal; 40(3):419-427.
Date published:
November 1, 2004
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Ruthie Angelovici.
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Two Arabidopsis srfr (suppressor of rps4-RLD) mutants exhibit avrRps4-specific disease resistance independent of RPS4. Soon IK, Koczan JM, Gassmann W. Plant Journal; 40(3):366-375.
Date published:
November 1, 2004
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Walter Gassmann.
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The PEN1 syntaxin defines a novel cellular compartment upon fungal attack and is required for the timely assembly of papillae. Assaad FF, Qiu J-L, Youngs H, Ehrhardt D, Zimmerli L, Kalde M, Wanner G, Peck SC, Edwards H, Ramonell K, Somerville CR, Thordal-Christensen H. Molecular Biology of the Cell; 15(11):5118-5129.
Date published:
November 1, 2004
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Scott Peck.
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Signals regulating trafficking of Menkes (MNK; ATP7A) copper-translocating P-type ATPase in polarized MDCK cells. Greenough M, Pase L, Voskoboinik I, Petris MJ, O'Brien AW, Camakaris J. American Journal of Physiology - Cell Physiology; 287(5):C1463-C1471.
Date published:
November 1, 2004
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Michael Petris.
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The identification of a sequence related to apicomplexan enolase from Sarcocystis neurona. Wilson AP, Thelen JJ, Lakritz J, Brown CR, Marsh AE. Parasitology Research; 94(5):354-360.
Date published:
November 1, 2004
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Jay Thelen.
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Cloning, up-regulation, and mitogenic role of porcine P2Y₂ receptor in coronary artery smooth muscle cells. Shen J, Seye CI, Wang M, Weisman GA, Wilden PA, Sturek M. Molecular Pharmacology; 66(5):1265-1274.
Date published:
November 1, 2004
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Gary Weisman.
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Diverse members of the AvrBs3/PthA family of type III effectors are major virulence determinants in bacterial blight disease of rice. Yang B, White FF. Molecular Plant-Microbe Interactions; 17(11):1192-1200.
Date published:
November 1, 2004
Featured in this article:
Bing Yang.
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Reactive oxygen gene network of plants. Mittler R, Vanderauwera S, Gollery M, Van Breusegem F. Trends in Plant Science; 9(10):490-498.
Date published:
October 1, 2004
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Ron Mittler.
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Citrus fruit bitter flavors: Isolation and functional characterization of the gene Cm1,2RhaT encoding a 1,2 rhamnosyltransferase, a key enzyme in the biosynthesis of the bitter flavonoids of citrus. Frydman A, Weisshaus O, Bar-Peled M, Huhman DV, Sumner LW, Marin FR, Lewinsohn E, Fluhr R, Gressel J, Eyal Y. Plant Journal; 40(1):88-100.
Date published:
October 1, 2004
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Lloyd Sumner.
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P2Y₂ receptors activate neuroprotective mechanisms in astrocytic cells. Chorna NE, Santiago-Pérez LI, Erb L, Seye CI, Neary JT, Sun GY, Weisman GA, González FA. Journal of Neurochemistry; 91(1):119-132.
Date published:
October 1, 2004
Featured in this article:
Gary Weisman.
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Maternal diet and other factors affecting offspring sex ratio: A review. Rosenfeld CS, Roberts RM. Biology of Reproduction; 71(4):1063-1070.
Date published:
October 1, 2004
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Regulation of interferon-τ (IFN-τ) gene promoters by growth factors that target the Ets-2 composite enhancer: A possible model for maternal control of ifn-τ production by the conceptus during early pregnancy. Ezashi T, Roberts RM. Endocrinology; 145(10):4452-4460.
Date published:
October 1, 2004
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Essential and separable roles for Syndecan-3 and Syndecan-4 in skeletal muscle development and regeneration. Cornelison DDW, Wilcox-Adelman SA, Goetinck PF, Rauvala H, Rapraeger AC, Olwin BB. Genes and Development; 18(18):2231-2236.
Date published:
September 15, 2004
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D Cornelison.
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Monitoring of recombinant survival motor neuron protein using fiber-optic surface plasmon resonance. Masson J-F, Barnhart M, Battaglia TM, Morris GE, Nieman RA, Young PJ, Lorson CL, Booksh KS. Analyst; 129(9):855-859.
Date published:
September 1, 2004
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Christian Lorson.
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Phosphoproteomics of the arabidopsis plasma membrane and a new phosphorylation site database W inside box sign. Nühse TS, Stensballe A, Jensen ON, Peck SC. Plant Cell; 16(9):2394-2405.
Date published:
September 1, 2004
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Scott Peck.
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Cellular function prediction and biological pathway discovery in arabidopsis thaliana using microarray data. Joshi T, Chen Y, Alexandrov N, Xu D. Annual International Conference of the IEEE Engineering in Medicine and Biology - Proceedings; 26(IV):2881-2884.
Date published:
September 1, 2004
Featured in this article:
Trupti Joshi,
Dong Xu.
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Statistical assessment for mass-spec protein identification using peptide fingerprinting approach. Ganapathy A, Wan X-F, Wan J, Thelen J, Emerich DW, Stacey G, Xu D. Annual International Conference of the IEEE Engineering in Medicine and Biology - Proceedings; 26 IV:3051-3054.
Date published:
September 1, 2004
Featured in this article:
XiuFeng “Henry” Wan,
Jay Thelen,
Gary Stacey,
Dong Xu.
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Potential of metabolomics as a functional genomics tool. Bino RJ, Hall RD, Fiehn O, Kopka J, Saito K, Draper J, Nikolau BJ, Mendes P, Roessner-Tunali U, Beale MH, Trethewey RN, Lange BM, Wurtele ES, Sumner LW. Trends in Plant Science; 9(9):418-425.
Date published:
September 1, 2004
Featured in this article:
Lloyd Sumner.
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Framework for developing a hierarchical model of reward focusing on the nucleus accumbens. Smith W, Nair SS, Xu D, Nair J, Beitman B. Annual International Conference of the IEEE Engineering in Medicine and Biology - Proceedings; 26 I:133-136.
Date published:
September 1, 2004
Featured in this article:
Dong Xu.
Modeling obsessive compulsive disorder. Clinch CH, Nair SS, Xu D, Nair J, Beitman B. Annual International Conference of the IEEE Engineering in Medicine and Biology - Proceedings; 26 II:890-892.
Date published:
September 1, 2004
Featured in this article:
Dong Xu.
Computational modeling of hysterical paralysis. Iyoho A, Nair SS, Xu D, Nair J, Beitman B. Annual International Conference of the IEEE Engineering in Medicine and Biology - Proceedings; 26 II:894-897.
Date published:
September 1, 2004
Featured in this article:
Dong Xu.
The P2Y₂ nucleotide receptor mediates vascular cell adhesion molecule-1 expression through interaction with VEGF receptor-2 (KDR/Flk-1). Seye CI, Yu N, González FA, Erb L, Weisman GA. Journal of Biological Chemistry; 279(34):35679-35686.
Date published:
August 20, 2004
Featured in this article:
Gary Weisman.
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Deprotonation stimulates productive folding in allosteric TRAP hammerhead ribozymes. Saksmerprome V, Burke DH. Journal of Molecular Biology; 341(3):685-694.
Date published:
August 13, 2004
Featured in this article:
Donald Burke-Agüero.
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The development of an Arabidopsis model system for genome-wide analysis of polyploidy effects. Chen ZJ, Wang J, Tian L, Lee H-S, Wang JJ, Chen M, Lee JJ, Josefsson C, Madlung A, Watson B, Lippman Z, Vaughn M, Pires JC, Colot V, Doerge RW, Martienssen RA, Comai L, Osborn TC. Biological Journal of the Linnean Society; 82(4):689-700.
Date published:
August 1, 2004
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.
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Flowering time divergence and genomic rearrangements in resynthesized Brassica polyploids (Brassicaceae). Pires JC, Zhao J, Schranz ME, Leon EJ, Quijada PA, Lukens LN, Osborn TC. Biological Journal of the Linnean Society; 82(4):675-688.
Date published:
August 1, 2004
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Genome redundancy and plasticity within ancient and recent Brassica crop species. Lukens LN, Quijada PA, Udall J, Pires JC, Schranz ME, Osborn TC. Biological Journal of the Linnean Society; 82(4):665-674.
Date published:
August 1, 2004
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Recent and recurrent polyploidy in Tragopogon (Asteraceae): Cytogenetic, genomic and genetic comparisons. Soltis DE, Soltis PS, Pires JC, Kovarik A, Tate JA, Mavrodiev E. Biological Journal of the Linnean Society; 82(4):485-501.
Date published:
August 1, 2004
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Erratum: Chemical versus pharmacological actions of nutraceutical phytochemicals: Antioxidant and anti inflammatory modalities (Current Topics in Nutraceutical Research vol.2 (13-26)). Hensley K, Mou S, Pye QN, Dixon RA, Sumner LW, Floyd RA. Current Topics in Nutraceutical Research; 2(3):152.
Date published:
August 1, 2004
Featured in this article:
Lloyd Sumner.
Revealing gene transcription and translation initiation patterns in archaea, using an interactive clustering model. Wan X-F, Bridges SM, Boyle JA. Extremophiles; 8(4):291-299.
Date published:
August 1, 2004
Featured in this article:
XiuFeng “Henry” Wan.
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Fosmid-based physical mapping of the Histoplasma capsulatum genome. Magrini V, Warren WC, Wallis J, Goldman WE, Xu J, Mardis ER, McPherson JD. Genome Research; 14(8):1603-1609.
Date published:
August 1, 2004
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Wes Warren.
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Atypical Kunitz-type serine proteinase inhibitors produced by the ruminant placenta. Maclean JA II, Roberts RM, Green JA. Biology of Reproduction; 71(2):455-463.
Date published:
August 1, 2004
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Mechanisms and functional properties of two peptide transporters, AtPTR2 and fPTR2. Chiang C-S, Stacey G, Tsay Y-F. Journal of Biological Chemistry; 279(29):30150-30157.
Date published:
July 16, 2004
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Gary Stacey.
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Trophoblast gene expression: Transcription factors in the specification of early trophoblast. Roberts RM. Reproductive Biology and Endocrinology; 2:47.
Date published:
July 5, 2004
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ACMES: Fast multiple-genome searches for short repeat sequences with concurrent cross-species information retrieval. Reneker J, Shyu C-R, Zeng P, Polacco JC, Gassmann W. Nucleic Acids Research; 32(WEB SERVER ISS.):W649-W653.
Date published:
July 1, 2004
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Walter Gassmann.
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The stoichiometry of Gag protein in HIV-1. Briggs JAG, Simon MN, Gross I, Kräusslich H-G, Fuller SD, Vogt VM, Johnson MC. Nature Structural and Molecular Biology; 11(7):672-675.
Date published:
July 1, 2004
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Marc Johnson.
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Activity profiling of papain-like cysteine proteases in plants. Van Der Hoorn RAL, Leeuwenburgh MA, Bogyo M, Joosten MHAJ, Peck SC. Plant Physiology; 135(3):1170-1178.
Date published:
July 1, 2004
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Scott Peck.
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Clades, clocks, and continents: Historical and biogeographical analysis of Myrtaceae, Vochysiaceae, and relatives in the Southern Hemisphere. Sytsma KJ, Litt A, Zjhra ML, Pires JC, Nepokroeff M, Conti E, Walker J, Wilson PG. International Journal of Plant Sciences; 165(4 SUPPL.):S85-S105.
Date published:
July 1, 2004
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Molecular cytogenetic analysis of recently evolved Tragopogon (Asteraceae) allopolyploids reveal a karyotype that is additive of the diploid progenitors. Pires JC, Lim KY, Kovarík A, Matyásek R, Boyd A, Leitch AR, Leitch IJ, Bennett MD, Soltis PS, Soltis DE. American Journal of Botany; 91(7):1022-1035.
Date published:
July 1, 2004
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Ancient vicariance or recent long-distance dispersal? Inferences about phylogeny and South American-African disjunctions in rapateaceae and bromeliaceae based on ndhF sequence data. Givnish TJ, Millam KC, Evans TM, Hall JC, Pires JC, Berry PE, Sytsma KJ. International Journal of Plant Sciences; 165(4):S35-S54.
Date published:
July 1, 2004
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Detection of genes involved in biodegradation and biotransformation in microbial communities by using 50-mer oligonucleotide microarrays. Rhee S-K, Liu X, Wu L, Chong SC, Wan X, Zhou J. Applied and Environmental Microbiology; 70(7):4303-4317.
Date published:
July 1, 2004
Featured in this article:
XiuFeng “Henry” Wan.
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PROSPECT-PSPP: An automatic computational pipeline for protein structure prediction. Guo J-T, Ellrott K, Chung WJ, Xu D, Passovets S, Xu Y. Nucleic Acids Research; 32(WEB SERVER ISS.):W522-W525.
Date published:
July 1, 2004
Featured in this article:
Dong Xu.
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ProteinDBS: A real-time retrieval system for protein structure comparison. Shyu C-R, Chi P-H, Scott G, Xu D. Nucleic Acids Research; 32(WEB SERVER ISS.):W527-W575.
Date published:
July 1, 2004
Featured in this article:
Dong Xu.
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Pepsin F. Green J, Roberts RM. Handbook of Proteolytic Enzymes: Second Edition; 1:137-138.
Date published:
June 30, 2004
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.
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Pregnancy-associated glycoproteins. Roberts RM, Xie S, Green J. Handbook of Proteolytic Enzymes: Second Edition; 1:135-137.
Date published:
June 30, 2004
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Quantitative relationship between synonymous codon usage bias and GC composition across unicellular genomes. Wan X-F, Xu D, Kleinhofs A, Zhou J. BMC Evolutionary Biology; 4:19.
Date published:
June 28, 2004
Featured in this article:
XiuFeng “Henry” Wan,
Dong Xu.
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Zinc-stimulated endocytosis controls activity of the mouse ZIP1 and ZIP3 zinc uptake transporters. Wang F, Dufner-Beattie J, Kim B-E, Petris MJ, Andrews G, Eide DJ. Journal of Biological Chemistry; 279(23):24631-24639.
Date published:
June 4, 2004
Featured in this article:
Michael Petris.
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The NV gene of snakehead rhabdovirus (SHRV) is not required for pathogenesis, and a heterologous glycoprotein can be incorporated into the SHRV envelope. Alonso M, Kim CH, Johnson MC, Pressley M, Leong J-A. Journal of Virology; 78(11):5875-5882.
Date published:
June 1, 2004
Featured in this article:
Marc Johnson.
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Proteomics of Medicago sativa cell walls. Watson BS, Lei Z, Dixon RA, Sumner LW. Phytochemistry; 65(12):1709-1720.
Date published:
June 1, 2004
Featured in this article:
Lloyd Sumner.
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High-throughput peptide mass fingerprinting of soybean seed proteins: Automated workflow and utility of UniGene expressed sequence tag databases for protein identification. Mooney BP, Thelen JJ. Phytochemistry; 65(12):1733-1744.
Date published:
June 1, 2004
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Jay Thelen.
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Glucose and insulin treatment of insulinoma cells results in transcriptional regulation of a common set of genes. Ohsugi M, Cras-Méneur C, Zhou Y, Warren W, Bernal-Mizrachi E, Permutt MA. Diabetes; 53(6):1496-1508.
Date published:
June 1, 2004
Featured in this article:
Wes Warren.
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Identification of critical domains and putative partners for the Caenorhabditis elegans spindle component LIN-5. Fisk Green R, Lorson M, Walhout AJM, Vidal M, Van Den Heuvel S. Molecular Genetics and Genomics; 271(5):532-544.
Date published:
June 1, 2004
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Monique Lorson.
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National Science Foundation-sponsored workshop report. Draft plan for soybean genomics. Stacey G, Vodkin L, Parrott WA, Shoemaker RC. Plant Physiology; 135(1):59-70.
Date published:
May 1, 2004
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Gary Stacey.
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Effects of Oxidative Stress and Inhibitors of the Pentose Phosphate Pathway on Sexually Dimorphic Production of IFN-τ by Bovine Blastocysts. Kimura K, Spate LD, Green MP, Roberts RM. Molecular Reproduction and Development; 68(1):88-95.
Date published:
May 1, 2004
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Identification of Methionine-rich Clusters That Regulate Copper-stimulated Endocytosis of the Human Ctr1 Copper Transporter. Guo Y, Smith K, Lee J, Thiele DJ, Petris MJ. Journal of Biological Chemistry; 279(17):17428-17433.
Date published:
April 23, 2004
Featured in this article:
Michael Petris.
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Cloning and characterization of an Mx gene and its corresponding promoter from the zebrafish, Danio rerio. Altmann SM, Mellon MT, Johnson MC, Paw BH, Trede NS, Zon LI, Kim CH. Developmental and Comparative Immunology; 28(4):295-306.
Date published:
April 1, 2004
Featured in this article:
Marc Johnson.
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When defense pathways collide. The response of arabidopsis to a combination of drought and heat stress 1[w]. Rizhsky L, Liang H, Shuman J, Shulaev V, Davletova S, Mittler R. Plant Physiology; 134(4):1683-1696.
Date published:
April 1, 2004
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Ron Mittler.
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Integrated and sequence-ordered BAC- and YAC-based physical maps for the rat genome. Krzywinski M, Wallis J, Gösele C, Bosdet I, Chiu R, Graves T, Hummel O, Layman D, Mathewson C, Wye N, Zhu B, Albracht D, Asano J, Barber S, Brown-John M, Chan S, Chand S, Cloutier A, Davito J, Fjell C, Gaige T, Ganten D, Girn N, Guggenheimer K, Himmelbauer H, Kreitler T, Leach S, Lee D, Lehrach H, Mayo M, Mead K, Olson T, Pandoh P, Prabhu A-L, Shin H, Tänzer S, Thompson J, Tsai M, Walker J, Yang G, Sekhon M, Hillier L, Zimdahl H, Marziali A, Osoegawa K, Zhao S, Siddiqui A, de Jong PJ, Warren W, Mardis E, McPherson JD, Wilson R, Hübner N, Jones S, Marra M, Schein J. Genome Research; 14(4):766-779.
Date published:
April 1, 2004
Featured in this article:
Wes Warren.
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P2X ₇ receptors stimulate AKT phosphorylation in astrocytes. Jacques-Silva MC, Rodnight R, Lenz G, Liao Z, Kong Q, Tran M, Kang Y, Gonzalez FA, Weisman GA, Neary JT. British Journal of Pharmacology; 141(7):1106-1117.
Date published:
April 1, 2004
Featured in this article:
Gary Weisman.
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Evaluation of 50-mer oligonucleotide arrays for detecting microbial populations in environmental samples. Tiquia SM, Wu L, Chong SC, Passovets S, Xu D, Xu Y, Zhou J. BioTechniques; 36(4):644-675.
Date published:
April 1, 2004
Featured in this article:
Dong Xu.
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A computational method for assessing peptide-identification reliability in tandem mass spectrometry analysis with SEQUEST. Razumovskaya J, Olman V, Xu D, Uberbacher EC, VerBerkmoes NC, Hettich RL, Xu Y. Proteomics; 4(4):961-969.
Date published:
April 1, 2004
Featured in this article:
Dong Xu.
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The Zinc Finger Protein Zat12 Is Required for Cytosolic Ascorbate Peroxidase 1 Expression during Oxidative Stress in Arabidopsis. Rizhsky L, Davletova S, Liang H, Mittler R. Journal of Biological Chemistry; 279(12):11736-11743.
Date published:
March 19, 2004
Featured in this article:
Ron Mittler.
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Acrodermatitis enteropathica mutations affect transport activity, localization and zinc-responsive trafficking of the mouse ZIP4 zinc transporter. Wang F, Kim B-E, Dufner-Beattie J, Petris MJ, Andrews G, Eide DJ. Human Molecular Genetics; 13(5):563-571.
Date published:
March 1, 2004
Featured in this article:
Michael Petris.
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Activation of a mitogen-activated protein kinase pathway in Arabidopsis by chitin. Wan J, Zhang S, Stacey G. Molecular Plant Pathology; 5(2):125-135.
Date published:
March 1, 2004
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Gary Stacey.
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Computational and experimental studies on Human Misshapen/NIK-related kinase MINK-1. Qu K, Lu Y, Lin N, Singh R, Xu X, Payan DG, Xu D. Current Medicinal Chemistry; 11(5):569-582.
Date published:
March 1, 2004
Featured in this article:
Dong Xu.
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Dissection of the Functional Surface of an Anti-insect Excitatory Toxin Illuminates a Putative “Hot Spot” Common to All Scorpion β-Toxins Affecting Na+ Channels. Cohen L, Karbat I, Gilles N, Froy O, Corzo G, Angelovici R, Gordon D, Gurevitz M. Journal of Biological Chemistry; 279(9):8206-8211.
Date published:
February 27, 2004
Featured in this article:
Ruthie Angelovici.
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Src Homology 3 Binding Sites in the P2Y₂ Nucleotide Receptor Interact with Src and Regulate Activities of Src, Proline-rich Tyrosine Kinase 2, and Growth Factor Receptors. Liu J, Liao Z, Camden J, Griffin KD, Garrad RC, Santiago-Pérez LI, González FA, Seye CI, Weisman GA, Erb L. Journal of Biological Chemistry; 279(9):8212-8218.
Date published:
February 27, 2004
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Gary Weisman.
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OXI1 kinase is necessary for oxidative burst-mediated signalling in Arabidopsis. Rentel MC, Lecourieux D, Ouaked F, Usher SL, Petersen L, Okamoto H, Knight H, Peck SC, Grierson CS, Hirt H, Knight MR. Nature; 427(6977):858-861.
Date published:
February 26, 2004
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Scott Peck.
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Zn2+-stimulated Endocytosis of the mZIP4 Zinc Transporter Regulates Its Location at the Plasma Membrane. Kim B-E, Wang F, Dufner-Beattie J, Andrews GK, Eide DJ, Petris MJ. Journal of Biological Chemistry; 279(6):4523-4530.
Date published:
February 6, 2004
Featured in this article:
Michael Petris.
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Tris(2-carboxyethyl)phosphine stabilization of RNA: Comparison with dithiothreitol for use with nucleic acid and thiophosphoryl chemistry. Rhee SS, Burke DH. Analytical Biochemistry; 325(1):137-143.
Date published:
February 1, 2004
Featured in this article:
Donald Burke-Agüero.
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Studies on endocytic mechanisms of the Menkes copper-translocating P-type ATPase (ATP7A; MNK): Endocytosis of the Menkes protein. Lane C, Petris MJ, Benmerah A, Greenough M, Camakaris J. BioMetals; 17(1):87-98.
Date published:
February 1, 2004
Featured in this article:
Michael Petris.
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The SLC31 (Ctr) copper transporter family. Petris MJ. Pflügers Archiv - Eur J Physiol; 447(5):752-755.
Date published:
February 1, 2004
Featured in this article:
Michael Petris.
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NopL, an Effector Protein of Rhizobium sp. NGR234, Thwarts Activation of Plant Defense Reactions. Bartsev AV, Deakin WJ, Boukli NM, McAlvin CB, Stacey G, Malnoë P, Broughton WJ, Staehelin C. Plant Physiology; 134(2):871-879.
Date published:
February 1, 2004
Featured in this article:
Gary Stacey.
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Sexual Dimorphism in Interferon-τ Production by In Vivo-Derived Bovine Embryos. Kimura K, Spate LD, Green MP, Murphy CN, Seidel GE Jr, Roberts RM. Molecular Reproduction and Development; 67(2):193-199.
Date published:
February 1, 2004
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Dimeric Rous sarcoma virus capsid protein structure relevant to immature gag assembly. Nandhagopal N, Simpson AA, Johnson MC, Francisco AB, Schatz GW, Rossmann MG, Vogt VM. Journal of Molecular Biology; 335(1):275-282.
Date published:
January 2, 2004
Featured in this article:
Marc Johnson.
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A survival motor neuron:tetanus toxin fragment C fusion protein for the targeted delivery of SMN protein to neurons. Francis JW, Figueiredo D, VanderSpek JC, Ayala LM, Kim YS, Remington MP, Young PJ, Lorson CL, Ikebe S, Fishman PS, Brown RH Jr. Brain Research; 995(1):84-96.
Date published:
January 2, 2004
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Christian Lorson.
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In Vitro and in Vivo Regulation of Antioxidant Response Element-Dependent Gene Expression by Estrogens. Ansell PJ, Espinosa-Nicholas C, Curran EM, Judy BM, Philips BJ, Hannink M, Lubahn DB. Endocrinology; 145(1):311-317.
Date published:
January 1, 2004
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Measuring programmed cell death in plants. Rizhsky L, Shulaev V, Mittler R. Methods in molecular biology (Clifton, N.J.); 282:179-189.
Date published:
January 1, 2004
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Ron Mittler.
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Sensitivity of 70-mer oligonucleotides and cDNAs for microarray analysis of gene expression in Arabidopsis and its related species. Lee H-S, Wang J, Tian L, Jiang H, Black MA, Madlung A, Watson B, Lukens L, Pires JC, Wang JJ, Comai L, Osborn TC, Doerge RW, Chen ZJ. Plant Biotechnology Journal; 2(1):45-57.
Date published:
January 1, 2004
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Genome-scale gene function prediction using multiple sources of high-throughput data in yeast Saccharomyces cerevisiae. Joshi T, Chen Y, Becker JM, Alexandrov N, Xu D. OMICS A Journal of Integrative Biology; 8(4):322-333.
Date published:
January 1, 2004
Featured in this article:
Trupti Joshi,
Dong Xu.
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Identification and Initial Characterization of a Putative Mycoplasma gallinarum Leucine Aminopeptidase Gene. Wan X, Branton SL, Hanson LA, Pharr GT. Current Microbiology; 48(1):32-38.
Date published:
January 1, 2004
Featured in this article:
XiuFeng “Henry” Wan.
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Expression and subcellular location of a leucine aminopeptidase of Mycoplasma Gallinarum. Wan X, Branton SL, Hughlett MB, Hanson LA, Pharr GT. International Journal of Poultry Science; 3(1):70-74.
Date published:
January 1, 2004
Featured in this article:
XiuFeng “Henry” Wan.
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Global protein function annotation through mining genome-scale data in yeast Saccharomyces cerevisiae. Chen Y, Xu D. Nucleic Acids Research; 32(21):6414-6424.
Date published:
January 1, 2004
Featured in this article:
Dong Xu.
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2003
The tyranny of adenosine recognition among RNA aptamers to coenzyme A. Saran D, Frank J, Burke DH. BMC Evolutionary Biology; 3:26.
Date published:
December 19, 2003
Featured in this article:
Donald Burke-Agüero.
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Structural Flexibility and the Thermodynamics of Helix Exchange Constrain Attenuation and Allosteric Activation of Hammerhead Ribozyme TRAPs. Saksmerprome V, Burke DH. Biochemistry; 42(47):13879-13886.
Date published:
December 2, 2003
Featured in this article:
Donald Burke-Agüero.
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Proteomic analysis of glycosylphosphatidylinositol-anchored membrane proteins. Elortza F, Nühse TS, Foster LJ, Stensballe A, Peck SC, Jensen ON. Molecular & cellular proteomics : MCP; 2(12):1261-1270.
Date published:
December 1, 2003
Featured in this article:
Scott Peck.
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Evolution and microsynteny of the apyrase gene family in three legume genomes. Cannon SB, McCombie WR, Sato S, Tabata S, Denny R, Palmer L, Katari M, Young ND, Stacey G. Molecular Genetics and Genomics; 270(4):347-361.
Date published:
December 1, 2003
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Gary Stacey.
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Prostaglandin E₂ production in astrocytes: Regulation by cytokines, extracellular ATP, and oxidative agents. Xu J, Chalimoniuk M, Shu Y, Simonyi A, Sun AY, Gonzalez FA, Weisman GA, Wood WG, Sun GY. Prostaglandins Leukotrienes and Essential Fatty Acids; 69(6):437-448.
Date published:
December 1, 2003
Featured in this article:
Gary Weisman.
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Metabolomics spectral formatting, alignment and conversion tools (MSFACTs). Duran AL, Yang J, Wang L, Sumner LW. Bioinformatics; 19(17):2283-2293.
Date published:
November 22, 2003
Featured in this article:
Lloyd Sumner.
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A Plasma Membrane Syntaxin Is Phosphorylated in Response to the Bacterial Elicitor Flagellin. Nühse TS, Boller T, Peck SC. Journal of Biological Chemistry; 278(46):45248-45254.
Date published:
November 14, 2003
Featured in this article:
Scott Peck.
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The Ewing’s sarcoma protein interacts with the Tudor domain of the survival motor neuron protein. Young PJ, Francis JW, Lince D, Coon K, Androphy EJ, Lorson CL. Molecular Brain Research; 119(1):37-49.
Date published:
November 6, 2003
Featured in this article:
Christian Lorson.
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A new informatics method for measuring synonymous codon usage bias. Wan X, Zhou J, Xu D. Intelligent Engineering Systems Through Artificial Neural Networks; 13:1011-1018.
Date published:
November 2, 2003
Featured in this article:
XiuFeng “Henry” Wan,
Dong Xu.
Nickel2+-mediated assembly of an RNA-amino acid complex. Hati S, Boles AR, Zaborske JM, Bergman B, Posto AL, Burke DH. Chemistry and Biology; 10(11):1129-1137.
Date published:
November 1, 2003
Featured in this article:
Donald Burke-Agüero.
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Activation of a Stress-Responsive Mitogen-Activated Protein Kinase Cascade Induces the Biosynthesis of Ethylene in Plants. Kim CY, Liu Y, Thorne ET, Yang H, Fukushige H, Gassmann W, Hildebrand D, Sharp RE, Zhang S. Plant Cell; 15(11):2707-2718.
Date published:
November 1, 2003
Featured in this article:
Walter Gassmann.
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Synthesis of Radiometal-Labeled and Fluorescent Cell-Permeating Peptide-PNA Conjugates for Targeting the bcl-2 Proto-oncogene. Gallazzi F, Wang Y, Jia F, Shenoy N, Landon LA, Hannink M, Lever SZ, Lewis MR. Bioconjugate Chemistry; 14(6):1083-1095.
Date published:
November 1, 2003
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Distinct Cysteine Residues in Keap1 Are Required for Keap1-Dependent Ubiquitination of Nrf2 and for Stabilization of Nrf2 by Chemopreventive Agents and Oxidative Stress. Zhang DD, Hannink M. Molecular and Cellular Biology; 23(22):8137-8151.
Date published:
November 1, 2003
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Large-scale analysis of in vivo phosphorylated membrane proteins by immobilized metal ion affinity chromatography and mass spectrometry. Nühse TS, Stensballe A, Jensen ON, Peck SC. Molecular & cellular proteomics : MCP; 2(11):1234-1243.
Date published:
November 1, 2003
Featured in this article:
Scott Peck.
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Profiling phenolic metabolites in transgenic alfalfa modified in lignin biosynthesis. Chen F, Duran AL, Blount JW, Sumner LW, Dixon RA. Phytochemistry; 64(5):1013-1021.
Date published:
November 1, 2003
Featured in this article:
Lloyd Sumner.
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Regiospecific hydroxylation of isoflavones by cytochrome P450 81E enzymes from Medicago truncatula. Liu C-J, Huhman D, Sumner LW, Dixon RA. Plant Journal; 36(4):471-484.
Date published:
November 1, 2003
Featured in this article:
Lloyd Sumner.
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Aspartic Proteinase Phylogeny and the Origin of Pregnancy-Associated Glycoproteins. Hughes AL, Green JA, Piontkivska H, Roberts RM. Molecular Biology and Evolution; 20(11):1940-1945.
Date published:
November 1, 2003
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A computational pipeline for protein structure prediction and analysis at genome scale. Shah M, Passovets S, Kim D, Ellrott K, Wang L, Vokler I, LoCascio P, Xu D, Xu Y. Bioinformatics; 19(15):1985-1996.
Date published:
October 12, 2003
Featured in this article:
Dong Xu.
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The water-water cycle is essential for chloroplast protection in the absence of stress. Rizhsky L, Liang H, Mittler R. Journal of Biological Chemistry; 278(40):38921-38925.
Date published:
October 3, 2003
Featured in this article:
Ron Mittler.
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RPS4-Mediated Disease Resistance Requires the Combined Presence of RPS4 Transcripts with Full-Length and Truncated Open Reading Frames. Zhang X-C, Gassmann W. Plant Cell; 15(10):2333-2342.
Date published:
October 1, 2003
Featured in this article:
Walter Gassmann.
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Nrf2 is a direct PERK substrate and effector of PERK-dependent cell survival. Cullinan SB, Zhang D, Hannink M, Arvisais E, Kaufman RJ, Diehl JA. Molecular and Cellular Biology; 23(20):7198-7209.
Date published:
October 1, 2003
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P2X₇ nucleotide receptor activation enhances IFNγ-induced type II nitric oxide synthase activity in BV-2 microglial cells. Gendron F-P, Chalimoniuk M, Strosznajder J, Shen S, González FA, Weisman GA, Sun GY. Journal of Neurochemistry; 87(2):344-352.
Date published:
October 1, 2003
Featured in this article:
Gary Weisman.
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EXCAVATOR: A computer program for efficiently mining gene expression data. Xu D, Olman V, Wang L, Xu Y. Nucleic Acids Research; 31(19):5582-5589.
Date published:
October 1, 2003
Featured in this article:
Dong Xu.
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Evolutionary landscapes for the acquisition of new ligand recognition by RNA aptamers. Held DM, Greathouse ST, Agrawal A, Burke DH. Journal of Molecular Evolution; 57(3):299-308.
Date published:
September 1, 2003
Featured in this article:
Donald Burke-Agüero.
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Inhibition of HIV-1 reverse transcriptase by RNA aptamers in Escherichia coli. Nickens DG, Patterson JT, Burke DH. RNA; 9(9):1029-1033.
Date published:
September 1, 2003
Featured in this article:
Donald Burke-Agüero.
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Comparative genetics at the gene and chromosome levels between rice (Oryza sativa) and wildrice (Zizania palustris). Hass BL, Pires JC, Porter R, Phillips RL, Jackson SA. Theoretical and Applied Genetics; 107(5):773-782.
Date published:
September 1, 2003
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A positively charged side chain at position 154 on the β8-αE loop of HIV-1 RT is required for stable ternary complex formation. Sharma B, Kaushik N, Upadhyay A, Tripathi S, Singh K, Pandey VN. Nucleic Acids Research; 31(17):5167-5174.
Date published:
September 1, 2003
Featured in this article:
Kamlendra Singh.
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PROSPECT II: Protein structure prediction program for genome-scale applications. Kim D, Xu D, Guo J-T, Ellrott K, Xu Y. Protein Engineering; 16(9):641-650.
Date published:
September 1, 2003
Featured in this article:
Dong Xu.
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Automated protein NMR resonance assignments. Wan X, Xu D, Slupsky CM, Lin G. Proceedings of the 2003 IEEE Bioinformatics Conference, CSB 2003; 197-208.
Date published:
August 11, 2003
Featured in this article:
Dong Xu.
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Probability profiles-novel approach in tandem mass spectrometry De Novo sequencing. Fridman T, Day R, Razumovskaya J, Xu D, Gorin A. Proceedings of the 2003 IEEE Bioinformatics Conference, CSB 2003; 415-418.
Date published:
August 11, 2003
Featured in this article:
Dong Xu.
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Early phosphorylation events in biotic stress. Peck SC. Current Opinion in Plant Biology; 6(4):334-338.
Date published:
August 1, 2003
Featured in this article:
Scott Peck.
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The P2Y₂ Nucleotide Receptor Mediates UTP-induced Vascular Cell Adhesion Molecule-1 Expression in Coronary Artery Endothelial Cells. Seye CI, Yu N, Jain R, Kong Q, Minor T, Newton J, Erb L, González FA, Weisman GA. Journal of Biological Chemistry; 278(27):24960-24965.
Date published:
July 4, 2003
Featured in this article:
Gary Weisman.
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Aluminum rapidly depolymerizes cortical microtubules and depolarizes the plasma membrane: Evidence that these responses are mediated by a glutamate receptor. Sivaguru M, Pike S, Gassmann W, Baskin TI. Plant and Cell; Plant and Cell Physiology.
Date published:
July 1, 2003
Featured in this article:
Walter Gassmann.
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Computational assignment of protein backbone NMR peaks by efficient bounding and filtering. Lin G, Xu D, Chen ZZ, Jiang T, Wen J, Xu Y. Journal of Bioinformatics and Computational Biology; 1(2):387-409.
Date published:
July 1, 2003
Featured in this article:
Dong Xu.
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Structural analysis of the finger subdomain in DNA polymerases. Josko D, Singh K, Modak MJ. Proceedings of the International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences; 294-299.
Date published:
June 23, 2003
Featured in this article:
Kamlendra Singh.
Molecular mechanisms that regulate transcription factor localization suggest new targets for drug development. Lee S-H, Hannink M. Advanced Drug Delivery Reviews; 55(6):717-731.
Date published:
June 16, 2003
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.
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A major function of the tobacco floral nectary is defense against microbial attack. Thornburg RW, Carter C, Powell A, Mittler R, Rizhsky L, Horner HT. Plant Systematics and Evolution; 238(1-4):211-218.
Date published:
June 1, 2003
Featured in this article:
Ron Mittler.
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Arabidopsis genes involved in acyl lipid metabolism. A 2003 census of the candidates, a study of the distribution of expressed sequence tags in organs, and a web-based database. Beisson F, Koo AJK, Ruuska S, Schwender J, Pollard M, Thelen JJ, Paddock T, Salas JJ, Savage L, Milcamps A, Mhaske VB, Cho Y, Ohlrogge JB. Plant Physiology; 132(2):681-697.
Date published:
June 1, 2003
Featured in this article:
Jay Thelen.
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Computational analyses of high-throughput protein-protein interaction data. Chen Y, Xu D. Current Protein and Peptide Science; 4(3):159-181.
Date published:
June 1, 2003
Featured in this article:
Dong Xu.
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Family of kunitz proteins from trophoblast: Expression of the trophoblast Kunitz domain proteins (TKDP) in cattle and sheep. Maclean JA II, Chakrabarty A, Xie S, Bixby JA, Roberts RM, Green JA. Molecular Reproduction and Development; 65(1):30-40.
Date published:
May 1, 2003
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.
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Approximation algorithms for NMR spectral peak assignment. Chen Z-Z, Jiang T, Lin G, Wen J, Xu D, Xu J, Xu Y. Theoretical Computer Science; 299(1-3):211-229.
Date published:
April 18, 2003
Featured in this article:
Dong Xu.
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Striking variation in the sex ratio of pups born to mice according to whether maternal diet is high in fat or carbohydrate. Rosenfeld CS, Grimm KM, Livingston KA, Brokman AM, Lamberson WE, Roberts RM. Proceedings of the National Academy of Sciences of the United States of America; 100(8):4628-4632.
Date published:
April 15, 2003
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.
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Characterization of cyclopropane fatty-acid synthase from Sterculia foetida. Bao X, Thelen JJ, Bonaventure G, Ohlrogge JB. Journal of Biological Chemistry; 278(15):12846-12853.
Date published:
April 11, 2003
Featured in this article:
Jay Thelen.
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Phe 771 of Escherichia coli DNA polymerase I (Klenow fragment) is the major site for the interaction with the template overhang and the stabilization of the pre-polymerase ternary complex. Srivastava A, Singh K, Modak MJ. Biochemistry; 42(13):3645-3654.
Date published:
April 8, 2003
Featured in this article:
Kamlendra Singh.
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A fish specific expression vector containing the interferon regulatory factor 1A (IRF1A) promoter for genetic immunization of fish. Alonso M, Johnson M, Simon B, Leong J-A. Vaccine; 21(15):1591-1600.
Date published:
April 2, 2003
Featured in this article:
Marc Johnson.
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Growth suppression, altered stomatal responses, and augmented induction of heat shock proteins in cytosolic ascorbate peroxidase (Apx1)-deficient Arabidopsis plants. Pnueli L, Liang H, Rozenberg M, Mittler R. Plant Journal; 34(2):187-203.
Date published:
April 1, 2003
Featured in this article:
Ron Mittler.
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A copper treatable Menkes disease mutation associated with defective trafficking of a functional Menkes copper ATPase. Kim B-E, Smith K, Petris MJ. Journal of Medical Genetics; 40(4):290-295.
Date published:
April 1, 2003
Featured in this article:
Michael Petris.
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An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG II. Bremer B, Bremer K, Chase MW, Reveal JL, Soltis DE, Soltis PS, Stevens PF, Anderberg AA, Fay MF, Goldblatt P, Judd WS, Källersjö M, Kårehed J, Kron KA, Lundberg J, Nickrent DL, Olmstead RG, Oxelman B, Pires JC, Rodman JE, Rudall PJ, Savolainen V, Sytsma KJ, Van Der Bank M, Wurdack K, Xiang JQ-Y, Zmarzty S. Bontanical Journal of the Linnean Society; 141(4):399-436.
Date published:
April 1, 2003
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.
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CUBIC: identification of regulatory binding sites through data clustering. Olman V, Xu D, Xu Y. Journal of Bioinformatics and Computational Biology; 1(1):21-40.
Date published:
April 1, 2003
Featured in this article:
Dong Xu.
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Transcriptome dynamics of deinococcus radiodurans recovering from ionizing radiation. Liu Y, Zhou J, Omelchenko MV, Beliaev AS, Venkateswaran A, Stair J, Wu L, Thompson DK, Xu D, Rogozin IB, Gaidamakova EK, Zhai M, Makarova KS, Koonin EV, Daly MJ. Proceedings of the National Academy of Sciences of the United States of America; 100(7):4191-4196.
Date published:
April 1, 2003
Featured in this article:
Dong Xu.
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Presence of 18-Å long hydrogen bond track in the active site of Escherichia coli DNA polymerase I (klenow fragment): Its requirement in the stabilization of enzyme-template-primer complex. Singh K, Modak MJ. Journal of Biological Chemistry; 278(13):11289-11302.
Date published:
March 28, 2003
Featured in this article:
Kamlendra Singh.
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Copper-stimulated endocytosis and degradation of the human copper transporter, hCtr1. Petris MJ, Smith K, Lee J, Thiele DJ. Journal of Biological Chemistry; 278(11):9639-9646.
Date published:
March 14, 2003
Featured in this article:
Michael Petris.
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Towards automated derivation of biological pathways using high-throughput biological data. Chen Y, Joshi T, Xu Y, Xu D. Proceedings - 3rd IEEE Symposium on BioInformatics and BioEngineering, BIBE 2003; 18-25.
Date published:
March 10, 2003
Featured in this article:
Trupti Joshi,
Dong Xu.
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A computational pipeline for protein structure prediction and analysis at genome scale. Shah M, Passovets S, Kim D, Ellrott K, Wang L, Vokler I, LoCascio P, Xu D, Xu Y. Proceedings - 3rd IEEE Symposium on BioInformatics and BioEngineering, BIBE 2003; 3-10.
Date published:
March 10, 2003
Featured in this article:
Dong Xu.
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Separation of genetic functions controlling organ identity in flowers. Keck E, McSteen P, Carpenter R, Coen E. EMBO Journal; 22(5):1058-1066.
Date published:
March 3, 2003
Featured in this article:
Paula McSteen.
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Understanding mechanisms of novel gene expression in polyploids. Osborn TC, Chris Pires J, Birchler JA, Auger DL, Chen ZJ, Lee H-S, Comai L, Madlung A, Doerge RW, Colot V, Martienssen RA. Trends in Genetics; 19(3):141-147.
Date published:
March 1, 2003
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.
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Plant metabolomics: Large-scale phytochemistry in the functional genomics era. Sumner LW, Mendes P, Dixon RA. Phytochemistry; 62(6):817-836.
Date published:
March 1, 2003
Featured in this article:
Lloyd Sumner.
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Mapping the proteome of barrel medic (Medicago truncatula). Watson BS, Asirvatham VS, Wang L, Sumner LW. Plant Physiology; 131(3):1104-1123.
Date published:
March 1, 2003
Featured in this article:
Lloyd Sumner.
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Legume natural products: Understanding and manipulating complex pathways for human and animal health. Dixon RA, Sumner LW. Plant Physiology; 131(3):878-885.
Date published:
March 1, 2003
Featured in this article:
Lloyd Sumner.
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Mechanisms of P2X₇ receptor-mediated ERK1/2 phosphorylation in human astrocytoma cells. Gendron F-P, Neary JT, Theiss PM, Sun GY, Gonzalez FA, Weisman GA. American Journal of Physiology - Cell Physiology; 284(2 53-2):C571-C581.
Date published:
February 1, 2003
Featured in this article:
Gary Weisman.
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Characterization of the UDP-glucose receptor (re-named here the P2Y ₁₄ receptor) adds diversity to the P2Y receptor family. Abbracchio MP, Boeynaems J-M, Barnard EA, Boyer JL, Kennedy C, Miras-Portugal MT, King BF, Gachet C, Jacobson KA, Weisman GA, Burnstock G. Trends in Pharmacological Sciences; 24(2):52-55.
Date published:
February 1, 2003
Featured in this article:
Gary Weisman.
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Improving the performance of DomainParser for structural domain partition using neural network. Guo J-T, Xu D, Kim D, Xu Y. Nucleic Acids Research; 31(3):944-952.
Date published:
February 1, 2003
Featured in this article:
Dong Xu.
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A transgene carrying an A2G missense mutation in the SMN gene modulates phenotypic severity in mice with severe (type I) spinal muscular atrophy. Monani UR, Pastore MT, Gavrilina TO, Jablonka S, Le TT, Andreassi C, DiCocco JM, Lorson C, Androphy EJ, Sendtner M, Podell M, Burghes AHM. Journal of Cell Biology; 160(1):41-52.
Date published:
January 6, 2003
Featured in this article:
Christian Lorson.
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Function and regulation of the mammalian copper-transporting ATPases: Insights from biochemical and cell biological approaches. Lutsenko S, Petris MJ. Journal of Membrane Biology; 191(1):1-12.
Date published:
January 1, 2003
Featured in this article:
Michael Petris.
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Family-level relationships of Onagraceae based on chloroplast rbcL and ndhF data. Levin RA, Wagner WL, Hoch PC, Nepokroeff M, Pires JC, Zimmer EA, Sytsma KJ. American Journal of Botany; 90(1):107-115.
Date published:
January 1, 2003
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.
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Nodulation gene regulation in Bradyrhizobium japonicum: A unique integration of global regulatory circuits. Loh J, Stacey G. Applied and Environmental Microbiology; 69(1):10-17.
Date published:
January 1, 2003
Featured in this article:
Gary Stacey.
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Signal transduction pathways for P2Y₂ and P2X₇ nucleotide receptors that mediate neuroinflammatory responses in astrocytes and microglial cells. Gendron F-P, Newbold NL, Vivas-Mejia PE, Wang M, Neary JT, Sun GY, Gonzalez FA, Weisman GA. Biomedical Research; 14(1):47-61.
Date published:
January 1, 2003
Featured in this article:
Gary Weisman.
A computational study of Shewanella oneidensis MR-1: Structural prediction and functional inference of hypothetical proteins. Yost C, Hauser L, Larimer F, Thompson D, Beliaev A, Zhou J, Xu Y, Xu D. OMICS A Journal of Integrative Biology; 7(2):177-191.
Date published:
January 1, 2003
Featured in this article:
Dong Xu.
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Identification of regulatory binding sites using minimum spanning trees. Olman V, Xu D, Xu Y. Pacific Symposium on Biocomputing; 327-338.
Date published:
January 1, 2003
Featured in this article:
Dong Xu.
More reliable protein NMR peak assignment via improved 2-interval scheduling. Chen Z-Z, Jiang T, Lin G, Rizzi R, Wen J, Xu D, Xu Y. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); 2832:580-592.
Date published:
January 1, 2003
Featured in this article:
Dong Xu.
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Characterization of protein structure and function at genome scale with a computational prediction pipeline. Xu D, Kim D, Dam P, Shah M, Uberbacher EC, Xu Y. Genetic Engineering; 25:269-293.
Date published:
January 1, 2003
Featured in this article:
Dong Xu.
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Solving data clustering problem as a string search problem. Olman V, Xu D, Xu Y. Statistical Data Mining and Knowledge Discovery; 415-432.
Date published:
January 1, 2003
Featured in this article:
Dong Xu.
A central role for Ets-2 in the transcriptional regulation and cyclic adenosine 5′-monophosphate responsiveness of the human chorionic gonadotropin-β subunit gene. Ghosh D, Ezashi T, Ostrowski MC, Roberts RM. Molecular Endocrinology; 17(1):11-26.
Date published:
January 1, 2003
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.
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Evolution of the interferon tau genes and their promoters, and maternal-trophoblast interactions in control of their expression. Roberts RM, Ezashi T, Rosenfeld CS, Ealy AD, Kubisch HM. Reproduction (Cambridge, England) Supplement; 61:239-251.
Date published:
January 1, 2003
Featured in this article:
.
2002
Substitution of conserved hydrophobic residues in motifs B and C of HIV-1 RT alters the geometry of its catalytic pocket. Sharma B, Kaushik N, Singh K, Kumar S, Pandey VN. Biochemistry; 41(52):15685-15697.
Date published:
December 31, 2002
Featured in this article:
Kamlendra Singh.
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Lysine 152 of MuLV reverse transcriptase is required for the integrity of the active site?. Shi Q, Singh K, Srivastava A, Kaushik N, Modak MJ. Biochemistry; 41(50):14831-14842.
Date published:
December 17, 2002
Featured in this article:
Kamlendra Singh.
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Distinct regulation of salinity and genotoxic stress responses by Arabidopsis MAP kinase phosphatase 1. Ulm R, Ichimura K, Mizoguchi T, Peck SC, Zhu T, Wang X, Shinozaki K, Paszkowski J. EMBO Journal; 21(23):6483-6493.
Date published:
December 2, 2002
Featured in this article:
Scott Peck.
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Expression patterns and mutant phenotype of teosinte branched1 correlate with growth suppression in maize and teosinte. Hubbard L, McSteen P, Doebley J, Hake S. Genetics; 162(4):1927-1935.
Date published:
December 1, 2002
Featured in this article:
Paula McSteen.
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Seasonal and diurnal variations in gene expression in the desert legume Retama raetam. Merquiol E, Pnueli L, Cohen M, Simovitch M, Rachmilevitch S, Goloubinoff P, Kaplan A, Mittler R. Plant, Cell and Environment; 25(12):1627-1638.
Date published:
December 1, 2002
Featured in this article:
Ron Mittler.
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Erratum: Role of PKC and MAPK in cytosolic PLA₂ phosphorylation and arachadonic acid release in primary murine astrocytes (Journal of Neurochemistry 83 (259-270)). Xu J, Weng Y-I, Simoni A, Krugh BW, Liao Z, Weisman GA, Sun GY. Journal of Neurochemistry; 83(5):1239.
Date published:
December 1, 2002
Featured in this article:
Gary Weisman.
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Copper-regulated trafficking of the Menkes disease copper ATPase is associated with formation of a phosphorylated catalytic intermediate. Petris MJ, Voskoboinik I, Cater M, Smith K, Kim B-E, Llanos RM, Strausak D, Camakaris J, Mercer JFB. Journal of Biological Chemistry; 277(48):46736-46742.
Date published:
November 29, 2002
Featured in this article:
Michael Petris.
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Functional P2Y₂ nucleotide receptors mediate uridine 5′-triphosphate-induced intimal hyperplasia in collared rabbit carotid arteries. Seye CI, Kong Q, Erb L, Garrad RC, Krugh B, Wang M, Turner JT, Sturek M, González FA, Weisman GA. Circulation; 106(21):2720-2726.
Date published:
November 19, 2002
Featured in this article:
Gary Weisman.
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Nucleic acid-independent retrovirus assembly can be driven by dimerization. Johnson MC, Scobie HM, Ma YM, Vogt VM. Journal of Virology; 76(22):11177-11185.
Date published:
November 15, 2002
Featured in this article:
Marc Johnson.
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A conditional mutation affecting localization of the Menkes disease copper ATPase: Suppression by copper supplementation. Kim B-E, Smith K, Meagher CK, Petris MJ. Journal of Biological Chemistry; 277(46):44079-44084.
Date published:
November 15, 2002
Featured in this article:
Michael Petris.
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Interactive clustering for exploration of genomic data. Wan X, Bridges SM, Boyle JA, Boyle AP. Intelligent Engineering Systems Through Artificial Neural Networks; 12:753-758.
Date published:
November 10, 2002
Featured in this article:
XiuFeng “Henry” Wan.
Radiometal-labeled peptide-PNA conjugates for targeting bcl-2 expression: Preparation, characterization, and in vitro mRNA binding. Lewis MR, Jia F, Gallazzi F, Wang Y, Zhang J, Shenoy N, Lever SZ, Hannink M. Bioconjugate Chemistry; 13(6):1176-1180.
Date published:
November 1, 2002
Featured in this article:
.
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Double antisense plants lacking ascorbate peroxidase and catalase are less sensitive to oxidative stress than single antisense plants lacking ascorbate peroxidase or catalase. Rizhsky L, Hallak-Herr E, Van Breusegem F, Rachmilevitch S, Barr JE, Rodermel S, Inzé D, Mittler R. Plant Journal; 32(3):329-342.
Date published:
November 1, 2002
Featured in this article:
Ron Mittler.
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The combined effect of drought stress and heat shock on gene expression in tobacco. Rizhsky L, Liang H, Mittler R. Plant Physiology; 130(3):1143-1151.
Date published:
November 1, 2002
Featured in this article:
Ron Mittler.
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AtOPT3, a member of the oligopeptide transporter family, is essential for embryo development in Arabidopsis. Stacey MG, Koh S, Becker J, Stacey G. Plant Cell; 14(11):2799-2811.
Date published:
November 1, 2002
Featured in this article:
Minviluz (Bing) Stacey,
Gary Stacey.
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Both antisense and sense expression of biotin carboxyl carrier protein isoform 2 inactivates the plastid acetyl-coenzyme A carboxylase in Arabidopsis thaliana. Thelen JJ, Ohlrogge JB. Plant Journal; 32(4):419-431.
Date published:
November 1, 2002
Featured in this article:
Jay Thelen.
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PRIMEGENS: Robust and efficient design of gene-specific probes for microarray analysis. Xu D, Li G, Wu L, Zhou J, Xu Y. Bioinformatics; 18(11):1432-1437.
Date published:
November 1, 2002
Featured in this article:
Dong Xu.
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Bradyoxetin, a unique chemical signal involved in symbiotic gene regulation. Loh J, Carlson RW, York WS, Stacey G. Proceedings of the National Academy of Sciences of the United States of America; 99(22):14446-14451.
Date published:
October 29, 2002
Featured in this article:
Gary Stacey.
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Characterization of mouse embryonic cells deficient in the Ctr1 high affinity copper transporter: Identification of a Ctr1-independent copper transport system. Lee J, Petris MJ, Thiele DJ. Journal of Biological Chemistry; 277(43):40253-40259.
Date published:
October 25, 2002
Featured in this article:
Michael Petris.
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Mapping microsatellite markers identified in porcine EST sequences. Rohrer GA, Fahrenkrug SC, Nonneman D, Tao N, Warren WC. Animal Genetics; 33(5):372-376.
Date published:
October 1, 2002
Featured in this article:
Wes Warren.
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Role of PKC and MAPK in cytosolic PLA₂ phosphorylation and arachadonic acid release in primary murine astrocytes. Xu J, Weng Y-I, Simoni A, Krugh BW, Liao Z, Weisman GA, Sun GY. Journal of Neurochemistry; 83(2):259-270.
Date published:
October 1, 2002
Featured in this article:
Gary Weisman.
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Improved approximation algorithms for NMR spectral peak assignment. Chen Z-Z, Jiang T, Lin G, Wen J, Xu D, Xu Y. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); 2452:82-96.
Date published:
September 17, 2002
Featured in this article:
Dong Xu.
CRM1-mediated nuclear export is present during porcine embryogenesis, but is not required for early cleavage. Cabot RA, Hannink M, Prather RS. Biology of Reproduction; 67(3):814-819.
Date published:
September 3, 2002
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.
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Oxidative stress, antioxidants and stress tolerance. Mittler R. Trends in Plant Science; 7(9):405-410.
Date published:
September 1, 2002
Featured in this article:
Ron Mittler.
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Urticalean rosids: Circumscription, rosid ancestry, and phylogenetics based on rbcL, trnL-F, and ndhF sequences. Sytsma KJ, Morawetz J, Chris Pires J, Nepokroeff M, Conti E, Zjhra M, Hall JC, Chase MW. American Journal of Botany; 89(9):1531-1546.
Date published:
September 1, 2002
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.
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Microarray analysis of chitin elicitation in Arabidopsis thaliana. Ramonell KM, Zhang B, Ewing RM, Chen Y, Xu D, Stacey G, Somerville S. Molecular Plant Pathology; 3(5):301-311.
Date published:
September 1, 2002
Featured in this article:
Dong Xu,
Gary Stacey.
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Characterization of early, chitin-induced gene expression in Arabidopsis. Zhang B, Ramonell K, Somerville S, Stacey G. Molecular Plant-Microbe Interactions; 15(9):963-970.
Date published:
September 1, 2002
Featured in this article:
Gary Stacey.
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Expression of interferon receptor subunits, IFNAR1 and IFNAR2, in the ovine uterus. Rosenfeld CS, Han C-S, Alexenko AP, Spencer TE, Roberts RM. Biology of Reproduction; 67(3):847-853.
Date published:
September 1, 2002
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.
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Residues in the first extracellular loop of a G protein-coupled receptor play a role in signal transduction. Akal-Strader A, Khare S, Xu D, Naider F, Becker JM. Journal of Biological Chemistry; 277(34):30581-30590.
Date published:
August 23, 2002
Featured in this article:
Dong Xu.
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Survival motor neuron protein in the nucleolus of mammalian neurons. Wehner KA, Ayala L, Kim Y, Young PJ, Hosler BA, Lorson CL, Baserga SJ, Francis JW. Brain Research; 945(2):160-173.
Date published:
August 2, 2002
Featured in this article:
Christian Lorson.
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Molecular and biochemical mechanisms associated with dormancy and drought tolerance in the desert legume Retama raetam. Pnueli L, Hallak-Herr E, Rozenberg M, Cohen M, Goloubinoff P, Kaplan A, Mittler R. Plant Journal; 31(3):319-330.
Date published:
August 1, 2002
Featured in this article:
Ron Mittler.
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A phylogenetic evaluation of a biosystematic framework: Brodiaea and related petaloid monocots (Themidaceae). Pires JC, Sytsma KJ. American Journal of Botany; 89(8):1342-1359.
Date published:
August 1, 2002
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.
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Analytical and biological variances associated with proteomic studies of Medicago truncatula by two-dimensional polyacrylamide gel electrophoresis. Asirvatham VS, Watson BS, Sumner LW. Proteomics; 2(8):960-968.
Date published:
August 1, 2002
Featured in this article:
Lloyd Sumner.
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Expressing RNA aptamers inside cells to reveal proteome and ribonome function. Burke DH, Nickens DG. Briefings in Functional Genomics and Proteomics; 1(2):169-188.
Date published:
July 1, 2002
Featured in this article:
Donald Burke-Agüero.
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Reactive oxygen intermediates and glutathione regulate the expression of cytosolic ascorbate peroxidase during iron-mediated oxidative stress in bean. Pekker I, Tel-Or E, Mittler R. Plant Molecular Biology; 49(5):429-438.
Date published:
July 1, 2002
Featured in this article:
Ron Mittler.
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Characterization of the nuclear import and export functions of IκBε. Lee S-H, Hannink M. Journal of Biological Chemistry; 277(26):23358-23366.
Date published:
June 28, 2002
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.
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Insertion of a small peptide of six amino acids into the β7-β8loop of the p51 subunit of HIV-1 reverse transcriptase perturbs theheterodimerand affects its activities. Pandey PK, Kaushik N, Singh K, Sharma B, Upadhyay AK, Kumar S, Harris D, Pandey VN. BMC Biochemistry; 3:1-14.
Date published:
June 18, 2002
Featured in this article:
Kamlendra Singh.
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Minute virus of mice small nonstructural protein NS2 interacts and colocalizes with the Smn protein. Young PJ, Jensen KT, Burger LR, Pintel DJ, Lorson CL. Journal of Virology; 76(12):6364-6369.
Date published:
June 15, 2002
Featured in this article:
Christian Lorson.
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Cadmium accumulation in the chloroplast of Euglena gracilis. Mendoza-Cozatl D, Devars S, Loza-Tavera H, Moreno-Sánchez R. Physiologia Plantarum; 115(2):276-283.
Date published:
June 7, 2002
Featured in this article:
David Mendoza-Cózatl.
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Protein identification success rates using peptide mass fingerprints to search protein and nucleotide databases in the proteomics studies of Medicago truncatula. Asirvatham VS, Watson BS, Wang L, Sumner LW. Proceedings 50th ASMS Conference on Mass Spectrometry and Allied Topics; 201-202.
Date published:
June 2, 2002
Featured in this article:
Lloyd Sumner.
Metabolome profiling of Medicago truncatula yields insight info biological variance and development. Duran AL, Broeckling CD, Huhman DV, Sumner LW. Proceedings 50th ASMS Conference on Mass Spectrometry and Allied Topics; 475-476.
Date published:
June 2, 2002
Featured in this article:
Lloyd Sumner.
Ion-neutral ratios: A unique measure of internal energy content of MALDI ions. Liu Z, Russell DH, Sumner LW. Proceedings 50th ASMS Conference on Mass Spectrometry and Allied Topics; 785-786.
Date published:
June 2, 2002
Featured in this article:
Lloyd Sumner.
Peptide transport in plants. Stacey G, Koh S, Granger C, Becker JM. Trends in Plant Science; 7(6):257-263.
Date published:
June 1, 2002
Featured in this article:
Gary Stacey.
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Mechanism of cell death and disease resistance induction by transgenic expression of bacterio-opsin. Pontier D, Mittler R, Lam E. Plant Journal; 30(5):499-509.
Date published:
May 30, 2002
Featured in this article:
Ron Mittler.
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Allosteric hammerhead ribozyme TRAPs. Burke DH, Ozerova NDS, Nilsen-Hamilton M. Biochemistry; 41(21):6588-6594.
Date published:
May 28, 2002
Featured in this article:
Donald Burke-Agüero.
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Is change in electrical potential or pH a hatching signal for Heterodera glycines?. Pike SM, Heinz R, Walk T, Jones C, Kraus GA, Gassmann W, Novacky AJ, Niblack TL. Phytopathology; 92(5):456-463.
Date published:
May 1, 2002
Featured in this article:
Walter Gassmann.
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Minute virus of mice NS1 interacts with the SMN protein, and they colocalize in novel nuclear bodies induced by parvovirus infection. Young PJ, Jensen KT, Burger LR, Pintel DJ, Lorson CL. Journal of Virology; 76(8):3892-3904.
Date published:
April 15, 2002
Featured in this article:
Christian Lorson.
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The multisubunit acetyl-CoA carboxylase is strongly associated with the chloroplast envelope through non-ionic interactions to the carboxyltransferase subunits. Thelen JJ, Ohlrogge JB. Archives of Biochemistry and Biophysics; 400(2):245-257.
Date published:
April 15, 2002
Featured in this article:
Jay Thelen.
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Boron-containing aptamers to ATP. Lato SM, Ozerova NDS, He K, Sergueeva Z, Shaw BR, Burke DH. Nucleic Acids Research; 30(6):1401-1407.
Date published:
March 15, 2002
Featured in this article:
Donald Burke-Agüero.
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Development and mapping of SSR markers for maize. Sharopova N, McMullen MD, Schultz L, Schroeder S, Sanchez-Villeda H, Gardiner J, Bergstrom D, Houchins K, Melia-Hancock S, Musket T, Duru N, Polacco M, Edwards K, Ruff T, Register JC, Brouwer C, Thompson R, Velasco R, Chin E, Lee M, Woodman-Clikeman W, Long MJ, Liscum E, Cone K, Davis G, Coe EH Jr. Plant Molecular Biology; 48(5-6):463-481.
Date published:
March 1, 2002
Featured in this article:
Dean Bergstrom.
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SRp30c-dependent stimulation of survival motor neuron (SMN) exon 7 inclusion is facilitated by a direct interaction with hTra2β1. Young PJ, DiDonato CJ, Hu D, Kothary R, Androphy EJ, Lorson CL. Human Molecular Genetics; 11(5):577-587.
Date published:
March 1, 2002
Featured in this article:
Christian Lorson.
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Flavin recognition by an RNA aptamer targeted toward FAD. Roychowdhury-Saha M, Lato SM, Shank ED, Burke DH. Biochemistry; 41(8):2492-2499.
Date published:
February 26, 2002
Featured in this article:
Donald Burke-Agüero.
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Metabolic profiling of saponins in Medicago sativa and Medicago truncatula using HPLC coupled to an electrospray ion-trap mass spectrometer. Huhman DV, Sumner LW. Phytochemistry; 59(3):347-360.
Date published:
February 20, 2002
Featured in this article:
Lloyd Sumner.
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A direct interaction between the survival motor neuron protein and p53 and its relationship to spinal muscular atrophy. Young PJ, Day PM, Zhou J, Androphy EJ, Morris GE, Lorson CL. Journal of Biological Chemistry; 277(4):2852-2859.
Date published:
January 25, 2002
Featured in this article:
Christian Lorson.
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DNA polymerase I of Mycobacterium tuberculosis: Functional role of a conserved aspartate in the hinge joining the M and N helices. Arrigo CJ, Singh K, Modak MJ. Journal of Biological Chemistry; 277(3):1653-1661.
Date published:
January 18, 2002
Featured in this article:
Kamlendra Singh.
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Chapter 5 Role of cytokines in skeletal muscle growth and differentiation. Olwin BB, Bren-Mattison Y, Cornelison DDW, Fedorov YV, Flanagan-Steet H, Jones NC. Advances in Developmental Biology and Biochemistry; 11(C):97-126.
Date published:
January 1, 2002
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D Cornelison.
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Quorum sensing in plant-associated bacteria. Loh J, Pierson EA, Pierson III LS, Stacey G, Chatterjee A. Current Opinion in Plant Biology; 5(4):285-290.
Date published:
January 1, 2002
Featured in this article:
Gary Stacey.
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Standardisation of cell lines. Stacey GN. Developments in Biologicals; 111:259-272.
Date published:
January 1, 2002
Featured in this article:
Gary Stacey.
An oligopeptide transporter gene family in Arabidopsis. Koh S, Wiles AM, Sharp JS, Naider FR, Becker JM, Stacey G. Plant Physiology; 128(1):21-29.
Date published:
January 1, 2002
Featured in this article:
Gary Stacey.
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A two-component regulator mediates population-density-dependent expression of the Bradyrhizobium japonicum nodulation genes. Loh J, Lohar DP, Andersen B, Stacey G. Journal of Bacteriology; 184(6):1759-1766.
Date published:
January 1, 2002
Featured in this article:
Gary Stacey.
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Plant metabolomics: The missing link in functional genomics strategies. Hall R, Beale M, Fiehn O, Hardy N, Sumner L, Bino R. Plant Cell; 14(7):1437-1440.
Date published:
January 1, 2002
Featured in this article:
Lloyd Sumner.
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Silver stain removal using H2O2 for enhanced peptide mass mapping by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. Sumner LW, Wolf-Sumner B, White SP, Asirvatham VS. Rapid Communications in Mass Spectrometry; 16(3):160-168.
Date published:
January 1, 2002
Featured in this article:
Lloyd Sumner.
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Over-expression of cinnamate 4-hydroxylase leads to increased accumulation of acetosyringone in elicited tobacco cell-suspension cultures. Blount JW, Masoud S, Sumner LW, Huhman D, Dixon RA. Planta; 214(6):902-910.
Date published:
January 1, 2002
Featured in this article:
Lloyd Sumner.
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Chapter Three Metabolomics: A developing and integral component in functional genomic studies of medicago truncatula. Sumner LW, Duran AL, Huhman DV, Smith JT. Recent Advances in Phytochemistry; 36(C):31-61.
Date published:
January 1, 2002
Featured in this article:
Lloyd Sumner.
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Metabolic engineering of fatty acid biosynthesis in plants. Thelen JJ, Ohlrogge JB. Metabolic Engineering; 4(1):12-21.
Date published:
January 1, 2002
Featured in this article:
Jay Thelen.
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Characterization of pMGA genes from the F – strain (vaccine strain) of Mycoplasma gallisepticum. Pharr GT, Branton SL, Hanson LA, Minion FC, Hughlett MB, Wan X. International Journal of Poultry Science; 1(4):63-73.
Date published:
January 1, 2002
Featured in this article:
XiuFeng “Henry” Wan.
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Development of microsatellite markers and comparative mapping for bovine chromosome 19. Kirkpatrick BW, Byla B, Kurar E, Warren WC. Animal Genetics; 33(1):65-68.
Date published:
January 1, 2002
Featured in this article:
Wes Warren.
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Purine signaling and potential new therapeutic approach: Possible outcomes of NTPDase inhibition. Gendron FP, Benrezzak O, Krugh BW, Kong Q, Weisman GA, Beaudoin AR. Current Drug Targets; 3(3):229-245.
Date published:
January 1, 2002
Featured in this article:
Gary Weisman.
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Clustering gene expression data using a graph-theoretic approach: An application of minimum spanning trees. Xu Y, Olman V, Xu D. Bioinformatics; 18(4):536-545.
Date published:
January 1, 2002
Featured in this article:
Dong Xu.
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A practical method for interpretation of threading scores: An application of neural network. Xu Y, Xu D, Olman V. Statistica Sinica; 12(1):159-177.
Date published:
January 1, 2002
Featured in this article:
Dong Xu.
Automated assignment of backbone NMR peaks using constrained bipartite matching. Xu Y, Xu D, Kim D, Olman V, Razumovskaya J, Jiang T. Computing In Science and Engineering; 4(1):50-62.
Date published:
January 1, 2002
Featured in this article:
Dong Xu.
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Carbon sequestration in Synechococcus Sp.: From molecular machines to hierarchical modeling. Heffelfinger GS, Martino A, Gorin A, Xu Y, Rintoul MD III, Geist A, Hashimi HA, Davidson GS, Faulon JL, Frink LJ, Haaland DM, Hart WE, Jakobsson E, Lane T, Li M, Locascio P, Olken F, Olman V, Palenik B, Plimpton SJ, Roe DC, Samatova NF, Shah M, Shoshoni A, Strauss CM, Thomas EV, Timlin JA, Xu D. OMICS A Journal of Integrative Biology; 6(4):305-330.
Date published:
January 1, 2002
Featured in this article:
Dong Xu.
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An efficient branch-and-bound algorithm for the assignment of protein backbone NMR peaks. Lin G, Xu d, Chen Z-Z, Jiang T, Wen J, Xu Y. Proceedings - IEEE Computer Society Bioinformatics Conference, CSB 2002; 165-174.
Date published:
January 1, 2002
Featured in this article:
Dong Xu.
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2001
Living under a ‘dormant’ canopy: A molecular acclimation mechanism of the desert plant Retama raetam. Mittler R, Merquiol E, Hallak-Herr E, Rachmilevitch S, Kaplan A, Cohen M. Plant Journal; 25(4):407-416.
Date published:
December 23, 2001
Featured in this article:
Ron Mittler.
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An in vivo reporter system for measuring increased inclusion of exon 7 in SMN2 mRNA: Potential therapy of SMA. Zhang ML, Lorson CL, Androphy EJ, Zhou J. Gene Therapy; 8(20):1532-1538.
Date published:
November 6, 2001
Featured in this article:
Christian Lorson.
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Syndecan-3 and syndecan-4 specifically mark skeletal muscle satellite cells and are implicated in satellite cell maintenance and muscle regeneration. Cornelison DDW, Filla MS, Stanley HM, Rapraeger AC, Olwin BB. Developmental Biology; 239(1):79-94.
Date published:
November 1, 2001
Featured in this article:
D Cornelison.
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Regulation of murine survival motor neuron (Smn) protein levels by modifying Smn exon 7 splicing. DiDonato CJ, Lorson CL, De Repentigny Y, Simard L, Chartrand C, Androphy EJ, Kothary R. Human Molecular Genetics; 10(23):2727-2736.
Date published:
November 1, 2001
Featured in this article:
Christian Lorson.
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Model for the three-dimensional structure of vitronectin: Predictions for the multi-domain protein from threading and docking. Xu D, Baburaj K, Peterson CB, Xu Y. Proteins: Structure, Function and Genetics; 44(3):312-320.
Date published:
August 15, 2001
Featured in this article:
Dong Xu.
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Sexual dimorphism among bovine embryos in their ability to make the transition to expanded blastocyst and in the expression of the signaling molecule IFN-τ. Larson MA, Kimura K, Kubisch HM, Roberts RM. Proceedings of the National Academy of Sciences of the United States of America; 98(17):9677-9682.
Date published:
August 14, 2001
Featured in this article:
.
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Barren inflorescence2 regulates axillary meristem development in the maize inflorescence. McSteen P, Hake S. Development; 128(15):2881-2891.
Date published:
August 1, 2001
Featured in this article:
Paula McSteen.
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Plant systematics in the next 50 years – Re-mapping the new frontier. Sytsma KJ, Pires JC. Taxon; 50(3):713-732.
Date published:
August 1, 2001
Featured in this article:
.
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Expression of pregnancy-associated glycoprotein 1 and 2 genes in in vivo, in vitro and parthenogenetically derived preimplantation pig embryos. Do H-J, Kim J-H, Abeydeera LR, Han Y-M, Matteri RL, Green JA, Roberts RM, Day BN, Prather RS. Zygote; 9(3):245-250.
Date published:
August 1, 2001
Featured in this article:
.
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The N-terminal Nuclear Export Sequence of IκBα Is Required for RanGTP-dependent Binding to CRM1. Lee S-H, Hannink M. Journal of Biological Chemistry; 276(26):23599-23606.
Date published:
June 29, 2001
Featured in this article:
.
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Inducible expression of bacterio-opsin in transgenic tobacco and tomato plants. Rizhsky L, Mittler R. Plant Molecular Biology; 46(3):313-323.
Date published:
June 1, 2001
Featured in this article:
Ron Mittler.
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Directed proteomics identifies a plant-specific protein rapidly phosphorylated in response to bacterial and fungal elicitors. Peck SC, Nühse TS, Hess D, Iglesias A, Meins F, Boller T. Plant Cell; 13(6):1467-1475.
Date published:
June 1, 2001
Featured in this article:
Scott Peck.
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Dragnet Ecology—“Just the Facts, Ma’am”: The Privilege of Science in a Postmodern World: Science of intrinsic quality needs narratives with explicit values—not just facts—particularly as it faces multiple-level complexity in advising on environmental policy, such as planning for energy futures. Allen TFH, Tainter JA, Chris Pires J, Hoekstra TW. BioScience; 51(6):475-486.
Date published:
June 1, 2001
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.
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Antiviral activities of the soluble extracellular domains of type I interferon receptors. Han C-S, Chen Y, Ezashi T, Roberts RM. Proceedings of the National Academy of Sciences of the United States of America; 98(11):6138-6143.
Date published:
May 22, 2001
Featured in this article:
.
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PR domain of rous sarcoma virus gag causes an assembly/budding defect in insect cells. Johnson MC, Scobie HM, Vogt VM. Journal of Virology; 75(9):4407-4412.
Date published:
May 1, 2001
Featured in this article:
Marc Johnson.
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Protein tertiary structure prediction. Xu D, Xu Y. Current Protocols in Protein Science; 2:Unit2.7.
Date published:
May 1, 2001
Featured in this article:
Dong Xu.
Genetic and environmental determinants of interferon-τ secretion by in vivo- and in vitro-derived bovine blastocysts. Kubisch HM, Larson MA, Ealy AD, Murphy CN, Roberts RM. Animal Reproduction Science; 66(1-2):1-13.
Date published:
April 30, 2001
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.
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A GP64-null baculovirus pseudotyped with vesicular stomatitis virus G protein. Mangor JT, Monsma SA, Johnson MC, Blissard GW. Journal of Virology; 75(6):2544-2556.
Date published:
March 15, 2001
Featured in this article:
Marc Johnson.
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Hydrogen peroxide, a messenger with too many roles?. Mittler R, Berkowitz G. Redox Report; 6(2):69-72.
Date published:
February 21, 2001
Featured in this article:
Ron Mittler.
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An RGD sequence in the P2Y₂ receptor interacts with αᵥβ₃ integrins and is required for G₀-mediated signal transduction. Erb L, Liu J, Ockerhausen J, Kong Q, Garrad RC, Griffin K, Neal C, Krugh B, Santiago-Pérez LI, González FA, Gresham HD, Turner JT, Weisman GA. Journal of Cell Biology; 152(3):491-501.
Date published:
February 5, 2001
Featured in this article:
Gary Weisman.
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New infraspecific names in North American Liliales. Kiger RW, Case FW Jr, Pires JC. Taxon; 50(1):201.
Date published:
February 1, 2001
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.
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Erratum: The exon 2b region of the spinal muscular atophy protein, SMN, is involved in self-association and SIP1 binding (Human Molecular Genetics (2000) vol. 9 (2869-2877)). Young PJ, Man NT, Lorson CL, Le TT, Androphy EJ, Burghes AHM, Morris GE. Human Molecular Genetics; 10(1):88.
Date published:
January 1, 2001
Featured in this article:
Christian Lorson.
Molecular and morphological phylogenetic analyses of Themidaceae (Asparagales). Pires JC, Fay MF, Davis WS, Hufford L, Rova J, Chase MW, Sytsma KJ. Kew Bulletin; 56(3):601-626.
Date published:
January 1, 2001
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.
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The Bradyrhizobium japonicum hsfA gene exhibits a unique developmental expression pattern in cowpea nodules. Oh H-S, Son O, Chun J-Y, Stacey G, Lee M-S, Min K-H, Song E-S, Cheon C-I. Molecular Plant-Microbe Interactions; 14(11):1286-1292.
Date published:
January 1, 2001
Featured in this article:
Gary Stacey.
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Differential regulation of a family of apyrase genes from Medicago truncatula. Cohn JR, Uhm T, Ramu S, Nam Y-W, Kim D-J, Varma Penmetsa R, Wood TC, Denny RL, Young ND, Cook DR, Stacey G. Plant Physiology; 125(4):2104-2119.
Date published:
January 1, 2001
Featured in this article:
Gary Stacey.
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Report and abstracts from the annual scientific meeting of the society for low temperature biology: 1-2 September 2000, st. Martin’s college, ambleside, cumbria. Stacey GN, Day JG. Cryo-Letters; 22(2):77-78.
Date published:
January 1, 2001
Featured in this article:
Gary Stacey.
Binding site for chitin oligosaccharides in the soybean plasma membrane. Day RB, Okada M, Ito Y, Tsukada K, Zaghouani H, Shibuya N, Stacey G. Plant Physiology; 126(3):1162-1173.
Date published:
January 1, 2001
Featured in this article:
Gary Stacey.
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A marker-dense physical map of the Bradyrhizobium japonicum genome. Tomkins JP, Wood TC, Stacey MG, Loh JT, Judd A, Goicoechea JL, Stacey G, Sadowsky MJ, Wing RA. Genome Research; 11(8):1434-1440.
Date published:
January 1, 2001
Featured in this article:
Minviluz (Bing) Stacey,
Gary Stacey.
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Feedback regulation of the Bradyrhizobium japonicum nodulation genes. Loh JT, Stacey G. Molecular Microbiology; 41(6):1357-1364.
Date published:
January 1, 2001
Featured in this article:
Gary Stacey.
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Population density-dependent regulation of the Bradyrhizobium japonicum nodulation genes. Loh JT, Yuen-Tsai JP-Y, Stacey MG, Lohar D, Welborn A, Stacey G. Molecular Microbiology; 42(1):37-46.
Date published:
January 1, 2001
Featured in this article:
Minviluz (Bing) Stacey,
Gary Stacey.
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ZMPP2, a novel type-2C protein phosphatase from maize. Broz AK, Thelen JJ, Muszynski MG, Miernyk JA, Randall DD. Journal of Experimental Botany; 52(361):1739-1740.
Date published:
January 1, 2001
Featured in this article:
Jay Thelen.
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Brassicaceae express multiple isoforms of biotin carboxyl carrier protein in a tissue-specific manner. Thelen JJ, Mekhedov S, Ohlrogge JB. Plant Physiology; 125(4):2016-2028.
Date published:
January 1, 2001
Featured in this article:
Jay Thelen.
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P2Y₂ receptors regulate multiple signal transduction pathways in monocytic cells. Weisman GA, Griffin K, Santiago-Pérez LI, Liu J, Krugh B, Flores RV, Chorna NE, Santos-Berríos C, Vivas-Mejía PE, Garrad RC, González FA, Erb L. Drug Development Research; 53(2-3):186-192.
Date published:
January 1, 2001
Featured in this article:
Gary Weisman.
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P2Y₂ nucleotide receptor signaling in human monocytic cells: Activation, desensitization, and coupling to mitogen-activated protein kinases. Santiago-Pérez LI, Flores RV, Santos-Berríos C, Chorna NE, Krugh B, Garrad RC, Erb L, Weisman GA, González FA. Journal of Cellular Physiology; 187(2):196-208.
Date published:
January 1, 2001
Featured in this article:
Gary Weisman.
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Minimum spanning trees for gene expression data clustering. Xu Y, Olman V, Xu D. Genome informatics. International Conference on Genome Informatics; 12:24-33.
Date published:
January 1, 2001
Featured in this article:
Dong Xu.
Application of PROSPECT in CASP4: Characterizing protein structures with new folds. Xu D, Crawford OH, Locascio PF, Xu Y. Proteins: Structure, Function and Genetics; 45(SUPPL. 5):140-148.
Date published:
January 1, 2001
Featured in this article:
Dong Xu.
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An aspartic proteinase expressed in the yolk sac and neonatal stomach of the mouse. Chen X, Rosenfeld CS, Roberts RM, Green JA. Biology of Reproduction; 65(4):1092-1101.
Date published:
January 1, 2001
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Intraovarian actions of oestrogen. Rosenfeld CS, Wagner JS, Roberts RM, Lubahn DB. Reproduction; 122(2):215-226.
Date published:
January 1, 2001
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Polymorphic forms of expressed bovine interferon-τ genes: Relative transcript abundance during early placental development, promoter sequences of genes and biological activity of protein products. Ealy AD, Larson SF, Liu L, Alexenko AP, Winkelman GL, Kubisch HM, Bixby JA, Roberts RM. Endocrinology; 142(7):2906-2915.
Date published:
January 1, 2001
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The place of farm animal species in the new genomics world of reproductive biology. Mahesh VB, Roberts RM. Biology of Reproduction; 64(2):409-417.
Date published:
January 1, 2001
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Estrogen receptor- and aromatase-deficient mice provide insight into the roles of estrogen within the ovary and uterus. Rosenfeld CS, Michael Roberts R, Lubahn DB. Molecular Reproduction and Development; 59(3):336-346.
Date published:
January 1, 2001
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Gene for porcine pregnancy-associated glycoprotein 2 (poPAG2): Its structural organization and analysis of its promoter. Szafranska B, Miura R, Ghosh D, Ezashi T, Xie S, Roberts RM, Green JA. Molecular Reproduction and Development; 60(2):137-146.
Date published:
January 1, 2001
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Repression of Ets-2-induced transactivation of the tau interferon promoter by Oct-4. Ezashi T, Ghosh D, Roberts RM. Molecular Reproduction and Development; 21(23):7883-7891.
Date published:
January 1, 2001
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2000
Phosphorylation-dependent regulation of cyclin D1 nuclear export and cyclin D1-dependent cellular transformation. Alt JR, Cleveland JL, Hannink M, Diehl JA. Genes and Development; 14(24):3102-3114.
Date published:
December 15, 2000
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.
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The exon 2b region of the spinal muscular atrophy protein, SMN, is involved in self-association and SIP1 binding. Young PJ, Man NT, Lorson CL, Le TT, Androphy EJ, Burghes AHM, Morris GE. Human Molecular Genetics; 9(19):2869-2877.
Date published:
November 22, 2000
Featured in this article:
Christian Lorson.
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The Menkes copper transporter is required for the activation of tyrosinase. Petris MJ, Strausak D, Mercer JFB. Human Molecular Genetics; 9(19):2845-2851.
Date published:
November 22, 2000
Featured in this article:
Michael Petris.
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Self-complementary motifs (SCM) in α-crystallin small heat shock proteins. Farnsworth PN, Singh K. FEBS Letters; 482(3):175-179.
Date published:
October 6, 2000
Featured in this article:
Kamlendra Singh.
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Transgene-induced lesion mimic. Mittler R, Rizhsky L. Plant Molecular Biology; 44(3):335-344.
Date published:
October 1, 2000
Featured in this article:
Ron Mittler.
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Molecular evolution of virulence in natural field strains of Xanthomonas campestris pv. vesicatoria. Gassmann W, Dahlbeck D, Chesnokova O, Minsavage GV, Jones JB, Staskawicz BJ. Journal of Bacteriology; 182(24):7053-7059.
Date published:
September 26, 2000
Featured in this article:
Walter Gassmann.
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Molecular characterization of a gene region involved in lipopolysaccharide biosynthesis in Bradyrhizobium japonicum: Cloning, sequencing and expression of rfaf gene. So J-S, Kim W-S, Stacey G. FEMS Microbiology Letters; 190(1):109-114.
Date published:
September 1, 2000
Featured in this article:
Gary Stacey.
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MyoD(-/-) satellite cells in single-fiber culture are differentiation defective and MRF4 deficient. Cornelison DDW, Olwin BB, Rudnicki MA, Wold BJ. Developmental Biology; 224(2):122-137.
Date published:
August 15, 2000
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D Cornelison.
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Htra2-β1 stimulates an exonic splicing enhancer and can restore full-length SMN expression to survival motor neuron 2 (SMN2). Hofmann Y, Lorson CL, Stamm S, Androphy EJ, Wirth B. Proceedings of the National Academy of Sciences of the United States of America; 97(17):9618-9623.
Date published:
August 15, 2000
Featured in this article:
Christian Lorson.
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Protein threading using PROSPECT: Design and evaluation. Xu Y, Xu D. Proteins: Structure, Function and Genetics; 40(3):343-354.
Date published:
August 15, 2000
Featured in this article:
Dong Xu.
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The virulence factor AvrXa7 of Xanthomonas oryzae pv. oryzae is a type III secretion pathway-dependent nuclear-localized double-stranded DNA-binding protein. Yang B, Zhu W, Johnson LB, White FF. Proceedings of the National Academy of Sciences of the United States of America; 97(17):9807-9812.
Date published:
August 15, 2000
Featured in this article:
Bing Yang.
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The J-helix of Escherichia coli DNA polymerase I (Klenow fragment) regulates polymerase and 3′-5′-exonuclease functions. Tuske S, Singh K, Kaushik N, Modak MJ. Journal of Biological Chemistry; 275(31):23759-23768.
Date published:
August 4, 2000
Featured in this article:
Kamlendra Singh.
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DNA vaccines encoding viral glycoproteins induce nonspecific immunity and Mx protein synthesis in fish. Kim CH, Johnson MC, Drennan JD, Simon BE, Thomann E, Leong J-A. Journal of Virology; 74(15):7048-7054.
Date published:
August 1, 2000
Featured in this article:
Marc Johnson.
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Prospects for understanding avirulence gene function. White FF, Yang B, Johnson LB. Current Opinion in Plant Biology; 3(4):291-298.
Date published:
August 1, 2000
Featured in this article:
Bing Yang.
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Pyruvate dehydrogenase kinase from Arabidopsis thaliana: A protein histidine kinase that phosphorylates serine residues. Thelen JJ, Miernyk JA, Randall DD. Biochemical Journal; 349(1):195-201.
Date published:
July 1, 2000
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Jay Thelen.
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Computational Tools for Protein Modeling. Xu Y, Xu D, Uberbacher EC. Current Protein and Peptide Science; 1(1):1-21.
Date published:
July 1, 2000
Featured in this article:
Dong Xu.
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A carboxylate triad is essential for the polymerase activity of Escherichia coli DNA polymerase I (Klenow Fragment). Presence of two functional triads at the catalytic center. Gangurde R, Kaushik N, Singh K, Modak MJ. Journal of Biological Chemistry; 275(26):19685-19692.
Date published:
June 30, 2000
Featured in this article:
Kamlendra Singh.
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Protein structure determination using protein threading and sparse NMR data. Xu Ying, Xu Dong, Crawford Oakley H, Einstein J Ralph, Sepersu Engin. Proceedings of the Annual International Conference on Computational Molecular Biology, RECOMB; 299-307.
Date published:
April 8, 2000
Featured in this article:
Dong Xu.
Enhancement of Na+ uptake currents, time-dependent inward-rectifying K+ channel currents, and K+ channel transcripts by K+ starvation in wheat root cells. Buschmann PH, Vaidyanathan R, Gassmann W, Schroeder JI. Plant Physiology; 122(4):1387-1397.
Date published:
April 1, 2000
Featured in this article:
Walter Gassmann.
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Adaptive diversification within a large family of recently duplicated, placentally expressed genes. Hughes AL, Green JA, Garbayo JM, Roberts RM. Proceedings of the National Academy of Sciences of the United States of America; 97(7):3319-3323.
Date published:
March 28, 2000
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.
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Microbial elicitors induce activation and dual phosphorylation of the Arabidopsis thaliana MAPK 6. Nühse TS, Peck SC, Hirt H, Boller T. Journal of Biological Chemistry; 275(11):7521-7526.
Date published:
March 17, 2000
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Scott Peck.
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Nuclear import of IκBα is accomplished by a Ran-independent transport pathway. Sachdev S, Bagchi S, Zhang DD, Mings AC, Hannink M. Molecular and Cellular Biology; 20(5):1571-1582.
Date published:
March 1, 2000
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Production of recombinant Snakehead rhabdovirus: The NV protein is not required for viral replication. Johnson MC, Simon BE, Kim CH, Leong J-AC. Journal of Virology; 74(5):2343-2350.
Date published:
March 1, 2000
Featured in this article:
Marc Johnson.
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Sequence-structure specificity of a knowledge based energy function at the secondary structure level. Xu D, Unseren MA, Xu Y, Uberbacher EC. Bioinformatics; 3/1/2000.
Date published:
March 1, 2000
Featured in this article:
Dong Xu.
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A floret by any other name: Control of meristem identity in maize. McSteen P, Laudencia-Chingcuanco D, Colasanti J. Trends in Plant Science; 5(2):61-66.
Date published:
February 1, 2000
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Paula McSteen.
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Cloning and functional characterization of a constitutively expressed nitrate transporter gene, OsNRT1, from rice. Lin C-M, Koh S, Stacey G, Yu S-M, Lin T-Y, Tsay Y-F. Plant Physiology; 122(2):379-388.
Date published:
February 1, 2000
Featured in this article:
Gary Stacey.
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An exonic enhancer is required for inclusion of an essential exon in the SMA-determining gene SMN. Lorson CL, Androphy EJ. Human Molecular Genetics; 9(2):259-266.
Date published:
January 22, 2000
Featured in this article:
Christian Lorson.
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Histidine modifying agents abolish pyruvate dehydrogenase kinase activity. Mooney B, David NR, Thelen JJ, Miernyk JA, Randall DD. Biochemical and Biophysical Research Communications; 267(2):500-503.
Date published:
January 19, 2000
Featured in this article:
Jay Thelen.
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LIN-5 is a novel component of the spindle apparatus required for chromosome segregation and cleavage plane specification in Caenorhabditis elegans. Lorson MA, Horvitz HR, Van Den Heuvel S. Journal of Cell Biology; 148(1):73-86.
Date published:
January 10, 2000
Featured in this article:
Monique Lorson.
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Role of Q190 of MuLV RT in ddNTP resistance and fidelity of DNA synthesis: A molecular model of interactions with substrates. Singh K, Kaushik N, Jin J, Madhusudanan M, Modak MJ. Protein Engineering; 13(9):635-643.
Date published:
January 1, 2000
Featured in this article:
Kamlendra Singh.
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Structure and regulation of opioid receptors. Chaturvedi K, Christoffers KH, Singh K, Howells RD. Biopolymers - Peptide Science Section; 55(4):334-346.
Date published:
January 1, 2000
Featured in this article:
Kamlendra Singh.
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Differential expression of two soybean apyrases, one of which is an early nodulin. Day RB, McAlvin CB, Loh JT, Denny RL, Wood TC, Young ND, Stacey G. Molecular Plant-Microbe Interactions; 13(10):1053-1070.
Date published:
January 1, 2000
Featured in this article:
Gary Stacey.
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Erratum: An Arabidopsis peptide transporter is a member of a new class of membrane transport proteins. The Plant cell (6) (1994) (1289-1299). Steiner H-Y, Song W, Zhang L, Naider F, Becker JM, Stacey G. Plant Cell; 12(11):2295.
Date published:
January 1, 2000
Featured in this article:
Gary Stacey.
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Biotin carboxyl carrier protein isoforms in Brassicaceae oilseeds. Thelen JJ, Mekhedov S, Ohlrogge JB. Biochemical Society Transactions; 28(6):595-598.
Date published:
January 1, 2000
Featured in this article:
Jay Thelen.
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Construction and characterization of a new bovine bacterial artificial chromosome library with 10 genome-equivalent coverage. Warren W, Smith TPL, Rexroad III CE, Fahrenkrug SC, Allison T, Shu C-L, Catanese J, De Jong PJ. Mammalian Genome; 11(8):662-663.
Date published:
January 1, 2000
Featured in this article:
Wes Warren.
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Extracellular UTP stimulates electrogenic bicarbonate secretion across CFTR knockout gallbladder epithelium. Clarke LL, Harline MC, Gawenis LR, Walker NM, Turner JT, Weisman GA. American Journal of Physiology - Gastrointestinal and Liver Physiology; 279(1 42-1):G132-G138.
Date published:
January 1, 2000
Featured in this article:
Gary Weisman.
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Mechanisms of agonist-dependent and -independent desensitization of a recombinant P2Y₂ nucleotide receptor. Otero M, Garrad RC, Velázquez B, Hernández-Pérez MG, Camden JM, Erb L, Clarke LL, Turner JT, Weisman GA, González FA. Molecular and Cellular Biochemistry; 205(1-2):115-123.
Date published:
January 1, 2000
Featured in this article:
Gary Weisman.
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Differential agonist-induced desensitization of P2Y₂ nucleotide receptors by ATP and UTP. Velázquez B, Garrad RC, Weisman GA, González FA. Molecular and Cellular Biochemistry; 206(1-2):75-89.
Date published:
January 1, 2000
Featured in this article:
Gary Weisman.
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Protein domain decomposition using a graph-theoretic approach. Xu Y, Xu D, Gabow HN. Bioinformatics; 16(12):1091-1104.
Date published:
January 1, 2000
Featured in this article:
Dong Xu.
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A computational method for NMR-constrained protein threading. Xu Y, Xu D, Crawford OH, Einstein JR. Journal of Computational Biology; 7(3-4):449-467.
Date published:
January 1, 2000
Featured in this article:
Dong Xu.
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GATEWAY recombinational cloning: Application to the cloning of large numbers of open reading frames or ORFeomes. Walhout AJM, Temple GF, Brasch MA, Hartley JL, Lorson MA, Van den Heuvel S, Vidal M. Methods in Enzymology; 328:575-592.
Date published:
January 1, 2000
Featured in this article:
Monique Lorson.
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Modular domain structure of Arabidopsis COP1. Reconstitution of activity by fragment complementation and mutational analysis of a nuclear localization signal in planta. Stacey MG, Kopp OR, Kim T-H, Von Arnim AG. Plant Physiology; 124(3):979-989.
Date published:
January 1, 2000
Featured in this article:
Minviluz (Bing) Stacey.
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Pregnancy-associated bovine and ovine glycoproteins exhibit spatially and temporally distinct expression patterns during pregnancy. Green JA, Xie S, Quan X, Bao B, Gan X, Mathialagan N, Beckers J-F, Roberts RM. Biology of Reproduction; 62(6):1624-1631.
Date published:
January 1, 2000
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.
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Independent origin of IFN-α and IFN-β in birds and mammals. Hughes AL, Roberts RM. Journal of Interferon and Cytokine Research; 20(8):737-739.
Date published:
January 1, 2000
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.
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A classification for the interferon-τ. Alexenko AP, Ealy AD, Bixby JA, Roberts RM. Journal of Interferon and Cytokine Research; 20(9):817-822.
Date published:
January 1, 2000
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.
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Caprine pregnancy-associated glycoproteins (PAG): Their cloning, expression, and evolutionary relationship to other PAG. Garbayo JM, Green JA, Manikkam M, Beckers J-F, Kiesling DO, Ealy AD, Roberts RM. Molecular Reproduction and Development; 57(4):311-322.
Date published:
January 1, 2000
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1999
Erratum: Functional analysis of the N-terminal CXXC metal-binding motifs in the human Menkes copper-transporting P-type ATPase expressed in cultured mammalian cells (Journal of Biological Chemistry (1999) 274 (22008-22012)). Voskoboinik I, Strausak D, Greenough M, Brooks H, Petris M, Smith S, Mercer JF, Camakaris J. Journal of Biological Chemistry; 274(50):36030.
Date published:
December 10, 1999
Featured in this article:
Michael Petris.
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Dyslipidemia and vascular dysfunction in diabetic pigs fed an atherogenic diet. Dixon JL, Stoops JD, Parker JL, Laughlin MH, Weisman GA. Arteriosclerosis, Thrombosis, and Vascular Biology; 19(12):2981-2992.
Date published:
December 1, 1999
Featured in this article:
Gary Weisman.
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Transgenic tobacco plants with reduced capability to detoxify reactive oxygen intermediates are hyperresponsive to pathogen infection. Mittler R, Herr EH, Orvar BL, Van Camp W, Willekens H, Inzé D, Ellis BE. Proceedings of the National Academy of Sciences of the United States of America; 96(24):14165-14170.
Date published:
November 23, 1999
Featured in this article:
Ron Mittler.
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Evaluation of the somatogenic activity of bovine placental lactogen with cell lines transfected with the bovine somatotropin receptor. Warren WC, Byatt JC, Huynh M, Paik K, Pegg G, Staten NR. Life Sciences; 65(25):2755-2767.
Date published:
November 12, 1999
Featured in this article:
Wes Warren.
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The Arabidopsis RPS4 bacterial-resistance gene is a member of the TIR-NBS-LRR family of disease-resistance genes. Gassmann W, Hinsch ME, Staskawicz BJ. Plant Journal; 20(3):265-277.
Date published:
November 1, 1999
Featured in this article:
Walter Gassmann.
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Molecular characterization of the glycoproteins from two warm water rhabdoviruses: Snakehead rhabdovirus (SHRV) and rhabdovirus of penaeid shrimp (RPS)/spring viremia of carp virus (SVCV). Johnson MC, Maxwell JM, Loh PC, Leong J-AC. Virus Research; 64(2):95-106.
Date published:
November 1, 1999
Featured in this article:
Marc Johnson.
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The Menkes protein (ATP7A; MNK) cycles via the plasma membrane both in basal and elevated extracellular copper using a C-terminal di-leucine endocytic signal. Petris MJ, Mercer JFB. Human Molecular Genetics; 8(11):2107-2115.
Date published:
October 1, 1999
Featured in this article:
Michael Petris.
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Evaluation of two cDNA-derived bovine tandem repeat sequences, BMON112 and BMON114. Warren WC, Allison T, Tao N, Kappes SM. Animal Genetics; 30(5):401-402.
Date published:
October 1, 1999
Featured in this article:
Wes Warren.
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A novel motif mediates the targeting of the Arabidopsis COP1 protein to subnuclear foci. Stacey MG, Von Arnim AG. Journal of Biological Chemistry; 274(38):27231-27236.
Date published:
September 17, 1999
Featured in this article:
Minviluz (Bing) Stacey.
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Aberrant nodulation response of Vigna umbellata to a Bradyrhizobium japonicum NodZ mutant and nodulation signals. Conn J, Stokkermans T, Kolli VK, Day RB, Dunlap J, Carlson R, Hughes D, Peters NK, Stacey G. Molecular Plant-Microbe Interactions; 12(9):766-773.
Date published:
September 1, 1999
Featured in this article:
Gary Stacey.
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The C terminus of AvrXa10 can be replaced by the transcriptional activation domain of VP16 from the herpes simplex virus. Zhu W, Yang B, Wills N, Johnson LB, White FF. Plant Cell; 11(9):1665-1674.
Date published:
September 1, 1999
Featured in this article:
Bing Yang.
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Polyphyly and Convergent Morphological Evolution in Commelinales and Commelinidae: Evidence from rbcL Sequence Data. Givnish TJ, Evans TM, Pires JC, Sytsma KJ. Molecular Phylogenetics and Evolution; 12(3):360-385.
Date published:
August 1, 1999
Featured in this article:
.
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Functional analysis of the N-terminal CXXC metal-binding motifs in the human Menkes copper-transporting P-type ATPase expressed in cultured mammalian cells. Voskoboinik I, Strausak D, Greenough M, Brooks H, Petris M, Smith S, Mercer JF, Camakaris J. Journal of Biological Chemistry; 274(31):22008-22012.
Date published:
July 30, 1999
Featured in this article:
Michael Petris.
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The dihydrolipoamide S-acetyltransferase subunit of the mitochondrial pyruvate dehydrogenase complex from maize contains a single lipoyl domain. Thelen JJ, Muszynski MG, David NR, Luethy MH, Elthon TE, Miernyk JA, Randall DD. Journal of Biological Chemistry; 274(31):21769-21775.
Date published:
July 30, 1999
Featured in this article:
Jay Thelen.
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Analysis of the role of glutamine 190 in the catalytic mechanism of murine leukemia virus reverse transcriptase. Jin J, Kaushik N, Singh K, Modak MJ. Journal of Biological Chemistry; 274(30):20861-20868.
Date published:
July 23, 1999
Featured in this article:
Kamlendra Singh.
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Identification of survival motor neuron as a transcriptional activator-binding protein. Strasswimmer J, Lorson CL, Breiding DE, Chen JJ, Le T, Burghes AHM, Androphy EJ. Human Molecular Genetics; 8(7):1219-1226.
Date published:
July 1, 1999
Featured in this article:
Christian Lorson.
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A single nucleotide difference that alters splicing patterns distinguishes the SMA gene SMN1 from the copy gene SMN2. Monani UR, Lorson CL, Parsons DW, Prior TW, Androphy EJ, Burghes AHM, McPherson JD. Human Molecular Genetics; 8(7):1177-1183.
Date published:
July 1, 1999
Featured in this article:
Christian Lorson.
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A single nucleotide in the SMN gene regulates splicing and is responsible for spinal muscular atrophy. Lorson CL, Hahnen E, Androphy EJ, Wirth B. Proceedings of the National Academy of Sciences of the United States of America; 96(11):6307-6311.
Date published:
May 25, 1999
Featured in this article:
Christian Lorson.
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Trophoblast interferons. Roberts RM, Ealy AD, Alexenko AP, Han C-S, Ezashi T. Placenta; 20(4):259-264.
Date published:
May 1, 1999
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.
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Involvement of lipid mediators on cytokine signaling and induction of secretory phospholipase A2 in immortalized astrocytes (DITNC). Tong W, Shah D, Xu J, Diehl JA, Hans A, Hannink M, Sun GY. Journal of Molecular Neuroscience; 12(2):89-99.
Date published:
April 1, 1999
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.
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Genetic selection of mutations in the high affinity K+ transporter HKT1 that define functions of a loop site for reduced Na+ permeability and increased Na+ tolerance. Rubio F, Schwarz M, Gassmann W, Schroeder JI. Journal of Biological Chemistry; 274(11):6839-6847.
Date published:
March 12, 1999
Featured in this article:
Walter Gassmann.
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Tyrosine 222, a member of the YXDD motif of MuLV RT, is catalytically essential and is a major component of the fidelity center. Kaushik N, Singh K, Ailuru I, Modak MJ. Biochemistry; 38(9):2617-2627.
Date published:
March 2, 1999
Featured in this article:
Kamlendra Singh.
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Signals controlling the expression of cytosolic ascorbate peroxidase during pathogen-induced programmed cell death in tobacco. Mittler R, Lam E, Shulaev V, Cohen M. Plant Molecular Biology; 39(5):1025-1035.
Date published:
March 1, 1999
Featured in this article:
Ron Mittler.
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The Bradyrhizobium japonicum nolA gene encodes three functionally distinct proteins. Loh J, Stacey MG, Sadowsky MJ, Stacey G. Journal of Bacteriology; 181(5):1544-1554.
Date published:
March 1, 1999
Featured in this article:
Minviluz (Bing) Stacey,
Gary Stacey.
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Plant gene banking: Agriculture, biotechnology and conservation. Stacey GN, Lynch PT, Benson EE. Agro Food Industry Hi-Tech; 10(2):9-14.
Date published:
March 1, 1999
Featured in this article:
Gary Stacey.
Discrete domains mediate the light-responsive nuclear and cytoplasmic localization of Arabidopsis COP1. Stacey MG, Hicks SN, Von Arnim AG. Plant Cell; 11(3):349-363.
Date published:
March 1, 1999
Featured in this article:
Minviluz (Bing) Stacey.
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Molecular cloning and expression analysis of the mitochondrial pyruvate dehydrogenase from maize. Thelen JJ, Miernyk JA, Randall DD. Plant Physiology; 119(2):635-643.
Date published:
February 1, 1999
Featured in this article:
Jay Thelen.
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The cell biology of the menkes disease protein. Petris MJ, Mercer JFB, Camakaris J. Advances in Experimental Medicine and Biology; 448:53-66.
Date published:
January 1, 1999
Featured in this article:
Michael Petris.
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Quality assurance for cell substrates. Stacey GN, Phillips P. Developments in biological standardization; 98:141-151.
Date published:
January 1, 1999
Featured in this article:
Gary Stacey.
Chapter 4 P2Y receptors in the nervous system: Molecular studies of a P2Y₂ receptor subtype from NG108-15 neuroblastoma x glioma hybrid cells. Weisman GA, Garrad RC, Erb LJ, Santos-Berrios C, Gonzalez FA. Progress in Brain Research; 120(C):33-43.
Date published:
January 1, 1999
Featured in this article:
Gary Weisman.
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Desensitization of P2Y2 receptor-activated transepithelial anion secretion. Clarke LL, Harline MC, Otero MA, Glover GG, Garrad RC, Krugh B, Walker NM, González FA, Turner JT, Weisman GA. American Journal of Physiology - Cell Physiology; 276(4 45-4):C777-C787.
Date published:
January 1, 1999
Featured in this article:
Gary Weisman.
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Protein threading by PROSPECT: A prediction experiment in CASP3. Xu Y, Xu D, Crawford OH, Einstein JR, Larimer F, Uberbacher E, Unseren MA, Zhang G. Protein Engineering; 12(11):899-907.
Date published:
January 1, 1999
Featured in this article:
Dong Xu.
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Protein structure prediction in a 210-type lattice model: Parameter optimization in the genetic algorithm using orthogonal array. Sun Z, Xia X, Guo Q, Xu D. Journal of Protein Chemistry; 18(1):39-46.
Date published:
January 1, 1999
Featured in this article:
Dong Xu.
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Identification of the expressed forms of ovine interferon-tau in the periimplantation conceptus: Sequence relationships and comparative biological activities. Winkelman GL, Roberts RM, Peterson AJ, Alexenko AP, Ealy AD. Biology of Reproduction; 61(6):1592-1600.
Date published:
January 1, 1999
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Erratum: The evolution of the type I interferons (Journal of Interferon and Cytokine Research (October 1998) 8:10 (805-816)). Roberts RM, Liu L, Guo Q, Leaman D, Bixby J. Journal of Interferon and Cytokine Research; 19(4):427.
Date published:
January 1, 1999
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Identification of a new aspartic proteinase expressed by the outer chorionic cell layer of the equine placenta. Green JA, Sancai X, Szafranska B, Gan X, Newman AG, McDowell K, Roberts RM. Biology of Reproduction; 60(5):1069-1077.
Date published:
January 1, 1999
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The cross-species antiviral activities of different IFN-τ- subtypes on bovine, murine, and human cells: Contradictory evidence for therapeutic potential. Alexenko AP, Ealy AD, Roberts RM. Journal of Interferon and Cytokine Research; 19(12):1335-1341.
Date published:
January 1, 1999
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1998
Pathogen-induced programmed cell death in plants, a possible defense mechanism. Mittler R, Del Pozo O, Meisel L, Lam E. Developmental Genetics; 21(4):279-289.
Date published:
December 6, 1998
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Ron Mittler.
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Differential regulation of genes encoding 1-aminocyclopropane-1-carboxylate (ACC) synthase in etiolated pea seedlings: Effects of indole-3-acetic acid, wounding, and ethylene. Peck SC, Kende H. Plant Molecular Biology; 38(6):977-982.
Date published:
December 1, 1998
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Scott Peck.
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A C-terminal di-leucine is required for localization of the Menkes protein in the trans-Golgi network. Petris MJ, Camakaris J, Greenough M, LaFontaine S, Mercer JFB. Human Molecular Genetics; 7(13):2063-2071.
Date published:
December 1, 1998
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Michael Petris.
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Correction of the copper transport defect of Menkes patient fibroblasts by expression of the menkes and Wilson ATPases. La Fontaine S, Firth SD, Camakaris J, Englezou A, Theophilos MB, Petris MJ, Howie M, Lockhart PJ, Greenough M, Brooks H, Reddel RR, Mercer JFB. Journal of Biological Chemistry; 273(47):31375-31380.
Date published:
November 20, 1998
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Michael Petris.
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Structural basis of agonist-induced desensitization and sequestration of the P2Y₂ nucleotide receptor: Consequences of truncation of the C terminus. Garrad RC, Otero MA, Erb L, Theiss PM, Clarke LL, Gonzalez FA, Turner JT, Weisman GA. Journal of Biological Chemistry; 273(45):29437-29444.
Date published:
November 6, 1998
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Gary Weisman.
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Biodegradation of aromatic hydrocarbons in an extremely acidic environment. Stapleton RD, Savage DC, Sayler GS, Stacey G. Applied and Environmental Microbiology; 64(11):4180-4184.
Date published:
November 1, 1998
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Gary Stacey.
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Definition of the redox states of cobalt-precorrinoids: Investigation of the substrate and redox specificity of CbiL from Salmonella typhimurium. Spancer P, Stolowich NJ, Sumner LW, Scott AI. Biochemistry; 37(42):14917-14927.
Date published:
October 20, 1998
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Lloyd Sumner.
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Molecular analysis of two pyruvate dehydrogenase kinases from maize. Thelen JJ, Muszynski MG, Miernyk JA, Randall DD. Journal of Biological Chemistry; 273(41):26618-26623.
Date published:
October 9, 1998
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Jay Thelen.
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Cloning vectors for the expression of green fluorescent protein fusion proteins in transgenic plants. Von Arnim AG, Deng X-W, Stacey MG. Gene; 221(1):35-43.
Date published:
October 9, 1998
Featured in this article:
Minviluz (Bing) Stacey.
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Rapid up-regulation of HKT1, a high-affinity potassium transporter gene, in roots of barley and wheat 4 following withdrawal of potassium. Wang T-B, Gassmann W, Rubio F, Schroeder JI, Glass ADM. Plant Physiology; 118(2):651-659.
Date published:
October 1, 1998
Featured in this article:
Walter Gassmann.
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The evolution of the type I interferons. Roberts RM, Liu L, Guo Q, Leaman D, Bixby J. Journal of Interferon and Cytokine Research; 18(10):805-816.
Date published:
October 1, 1998
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Recombination, RNA evolution, and bifunctional RNA molecules isolated through chimeric SELEX. Burke DH, Willis JH. RNA; 4(9):1165-1175.
Date published:
September 1, 1998
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Donald Burke-Agüero.
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Loss of IκBα-mediated control over nuclear import and DNA binding enables oncogenic activation of c-Rel. Sachdev S, Hannink M. Molecular and Cellular Biology; 18(9):5445-5456.
Date published:
September 1, 1998
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Finding the funding for agriculture [1]. Roberts RM. Nature; 394(6693):517.
Date published:
August 6, 1998
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The domain encoded by exon 2 of the survival motor neuron protein mediates nucleic acid binding. Lorson CL, Androphy EJ. Human Molecular Genetics; 7(8):1269-1275.
Date published:
August 1, 1998
Featured in this article:
Christian Lorson.
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A unified DNA- and dNTP-binding mode for DNA polymerases. Singh K, Modak MJ. Trends in Biochemical Sciences; 23(8):277-281.
Date published:
August 1, 1998
Featured in this article:
Kamlendra Singh.
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AvrXa10 contains an acidic transcriptional activation domain in the functionally conserved C terminus. Zhu W, Yang B, Chittoor JM, Johnson LB, White FF. Molecular Plant-Microbe Interactions; 11(8):824-832.
Date published:
August 1, 1998
Featured in this article:
Bing Yang.
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Control of interferon-τ gene expression by Ets-2. Ezashi T, Ealy AD, Ostrowski MC, Roberts RM. Proceedings of the National Academy of Sciences of the United States of America; 95(14):7882-7887.
Date published:
July 7, 1998
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Control of floral homeotic gene expression and organ morphogenesis in Antirrhinum. McSteen PCM, Vincent CA, Doyle S, Carpenter R, Coen ES. Development; 125(13):2359-2369.
Date published:
July 1, 1998
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Paula McSteen.
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Characterization of proteins utilized in the desulfurization of petroleum products by matrix-assisted laser desorption ionization time-of- flight mass spectrometry. Wolf BP, Sumner LW, Shields SJ, Neilsen K, Gray KA, Russell DH. Analytical Biochemistry; 260(2):117-127.
Date published:
July 1, 1998
Featured in this article:
Lloyd Sumner.
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A gene encoding 1-aminocyclopropane-1-carboxylate (ACC) synthase produces two transcripts: Elucidation of a conserved response. Peck SC, Kende H. Plant Journal; 14(5):573-581.
Date published:
June 1, 1998
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Scott Peck.
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The Bradyrhizobium japonicum noeD gene: A negatively acting, genotype-specific nodulation gene for soybean. Lohrke SM, Day B, Kumar Kolli VS, Hancock R, Yuen JP-Y, De Souza ML, Stacey G, Carlson R, Tong Z, Hur H-G, Orf JH, Sadowsky MJ. Molecular Plant-Microbe Interactions; 11(6):476-488.
Date published:
June 1, 1998
Featured in this article:
Gary Stacey.
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Electrostatics, allostery, and activity of the yeast chorismate mutase. Lin SL, Xu D, Li A, Nussinov R. Proteins: Structure, Function and Genetics; 31(4):445-452.
Date published:
June 1, 1998
Featured in this article:
Dong Xu.
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Loss of the signature six carboxyl amino acid tail from ovine interferon-tau does not affect biological activity. Ealy AD, Alexenko AP, Keisler DH, Roberts RM. Biology of Reproduction; 58(6):1463-1468.
Date published:
June 1, 1998
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Nuclear localization of IκBα is mediated by the second ankyrin repeat: The IκBα ankyrin repeats define a novel class of cis-acting nuclear import sequences. Sachdev S, Hoffmann A, Hannink M. Molecular and Cellular Biology; 18(5):2524-2534.
Date published:
May 1, 1998
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SMN oligomerization defect correlates with spinal muscular atrophy severity. Lorson CL, Strasswimmer J, Yao J-M, Baleja JD, Hahnen E, Wirth B, Le T, Burghes AHM, Androphy EJ. Nature Genetics; 19(1):63-66.
Date published:
May 1, 1998
Featured in this article:
Christian Lorson.
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Asymmetric responsiveness to ethylene mediates cell elongation in the apical hook of peas. Peck SC, Pawlowski K, Kende H. Plant Cell; 10(5):713-719.
Date published:
May 1, 1998
Featured in this article:
Scott Peck.
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Interaction of DNA with bovine lens α-crystallin: Its functional implications. Singh K, Groth-Vasselli B, Farnsworth PN. International Journal of Biological Macromolecules; 22(3-4):315-320.
Date published:
May 1, 1998
Featured in this article:
Kamlendra Singh.
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Refinement of 3D structure of bovine lens αA-crystallin. Farnsworth PN, Frauwirth H, Groth-Vasselli B, Singh K. International Journal of Biological Macromolecules; 22(3-4):175-185.
Date published:
May 1, 1998
Featured in this article:
Kamlendra Singh.
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Genetic control of plant development. McSteen P, Hake S. Current Opinion in Biotechnology; 9(2):189-195.
Date published:
April 1, 1998
Featured in this article:
Paula McSteen.
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A novel acidophilic RNA motif that recognizes coenzyme A. Burke DH, Hoffman DC. Biochemistry; 37(13):4653-4663.
Date published:
March 31, 1998
Featured in this article:
Donald Burke-Agüero.
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New method for modeling and solving the protein fold recognition problem. Xu Ying, Xu Dong, Uberbacher Edward C. Proceedings of the Annual International Conference on Computational Molecular Biology, RECOMB; 285-292.
Date published:
March 22, 1998
Featured in this article:
Dong Xu.
Post-transcriptional suppression of cytosolic ascorbate peroxidase expression during pathogen-induced programmed cell death in tobacco. Mittler R, Feng X, Cohen M. Plant Cell; 10(3):461-473.
Date published:
March 1, 1998
Featured in this article:
Ron Mittler.
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Legume nodule organogenesis. Cohn J, Bradley Day R, Stacey G. Trends in Plant Science; 3(3):105-110.
Date published:
March 1, 1998
Featured in this article:
Gary Stacey.
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Mechanism and evolution of protein dimerization. Xu D, Tsai C-J, Nussinov R. Protein Science; 7(3):533-544.
Date published:
March 1, 1998
Featured in this article:
Dong Xu.
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Relationship between age of blastocyst formation and interferon-τ secretion by in vitro-derived bovine embryos. Kubisch HM, Larson MA, Roberts RM. Molecular Reproduction and Development; 49(3):254-260.
Date published:
March 1, 1998
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Effect of electrostatic interactions in recognition of acetylcholine by acetylcholinesterase. Linaras CE, Singh K, Kristol D, Ritter AB. Journal of Molecular Structure: THEOCHEM; 425(1-2):81-85.
Date published:
February 19, 1998
Featured in this article:
Kamlendra Singh.
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Different ovine interferon-tau genes are not expressed identically and their protein products display different activities. Ealy AD, Green JA, Alexenko AP, Keisler DH, Roberts RM. Biology of Reproduction; 58(2):566-573.
Date published:
February 1, 1998
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An SP1-binding site and TATA element are sufficient to support full transactivation by proximally bound NS1 protein of minute virus of mice. Lorson C, Pearson J, Burger L, Pintel DJ. Virology; 240(2):326-337.
Date published:
January 15, 1998
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Christian Lorson.
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Correlation of 2,3,7,8-tetrachlorodibenzo-p-dioxin-induced apoptotic cell death in the embryonic vasculature with embryotoxicity. Cantrell SM, Joy-Schlezinger J, Stegeman JJ, Tillitt DE, Hannink M. Toxicology and Applied Pharmacology; 148(1):24-34.
Date published:
January 1, 1998
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Interferon-inducible Mx proteins in fish. Leong J-AC, Trobridge GD, Kim CHY, Johnson M, Simon B. Immunological Reviews; 166:349-363.
Date published:
January 1, 1998
Featured in this article:
Marc Johnson.
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Corrigendum: The domain encoded by exon 2 of the survival motor neuron protein mediates nucleic acid binding (Human Molecular Genetics (1998) 7 (1269-1275)). Lorson CL, Androphy EJ. Human Molecular Genetics; 7(11):1831.
Date published:
January 1, 1998
Featured in this article:
Christian Lorson.
Analysis of the role of gln190 in the active site of murine leukemia virus reverse transcriptase (MuLV RT). Jin J, Singh K, Modak MJ. FASEB Journal; 12(8):A1353.
Date published:
January 1, 1998
Featured in this article:
Kamlendra Singh.
Substitution of tyr->phe in the YXDD motif of MULV-RT significantly enhances the fidelity of the enzyme. Kaushik N, Ailuru I, Singh K, Modak MJ. FASEB Journal; 12(8):A1353.
Date published:
January 1, 1998
Featured in this article:
Kamlendra Singh.
Pentacoordinate (μ-Oxo)diiron (III) Thiolate Complexes and Dimeric Iron(II) Precursors. Musie G, Lai C-h, Reibenspies JH, Sumner LW, Darensbourg MY. Inorganic Chemistry; 37(16):4086-4093.
Date published:
January 1, 1998
Featured in this article:
Lloyd Sumner.
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Partial Purification and Characterization of the Maize Mitochondrial Pyruvate Dehydrogenase Complex. Thelen JJ, Miernyk JA, Randall DD. Plant Physiology; 116(4):1443-1450.
Date published:
January 1, 1998
Featured in this article:
Jay Thelen.
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Structure and function of P2Y₂ nucleotide receptors in cystic fibrosis (CF) epithelium. Weisman GA, Garrad RC, Erb L, Otero M, Gonzalez FA, Clarke LL. Advances in Experimental Medicine and Biology; 431:417-424.
Date published:
January 1, 1998
Featured in this article:
Gary Weisman.
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Salivary gland nucleotide receptors: Changes in expression and activity related to development and tissue damage. Turner JT, Park M, Camden JM, Weisman GA. Annals of the New York Academy of Sciences; 842:70-75.
Date published:
January 1, 1998
Featured in this article:
Gary Weisman.
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P2Y nucleotide receptors in the immune system: Signaling by a P2Y₂ receptor in U937 monocytes. Weisman GA. Drug Development Research; 45(3-4):222-228.
Date published:
January 1, 1998
Featured in this article:
Gary Weisman.
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Salivary gland nucleotide receptors: Evidence for functional expression of both P2X and P2Y subtypes. Turner JT, Weisman GA, Landon LA, Park M, Camden JM. European Journal of Morphology; 36(2 SUPPL.):170-175.
Date published:
January 1, 1998
Featured in this article:
Gary Weisman.
An efficient computational method for globally optimal threading. Xu Y, Xu D, Uberbacher EC. Journal of Computational Biology; 5(3):597-614.
Date published:
January 1, 1998
Featured in this article:
Dong Xu.
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Protein folding via binding and vice versa. Tsai C-J, Xu D, Nussinov R. Folding and Design; 3(4):R71-R80.
Date published:
January 1, 1998
Featured in this article:
Dong Xu.
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Favorable domain size in proteins. Xu D, Nussinov R. Folding and Design; 3(1):11-17.
Date published:
January 1, 1998
Featured in this article:
Dong Xu.
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An aspartic proteinase expressed in the equine placenta. Green J, Xie S, Gan X, Roberts RM. Advances in Experimental Medicine and Biology; 436:163-167.
Date published:
January 1, 1998
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.
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Expression of multiple genes for pregnancy-associated glycoproteins in the sheep placenta. Xie S, Green J, Roberts RM. Advances in Experimental Medicine and Biology; 436:195-200.
Date published:
January 1, 1998
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.
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Pepsin-related molecules secreted by trophoblast. Green JA, Xie S, Michael Roberts R. Reviews of Reproduction; 3(1):62-69.
Date published:
January 1, 1998
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1997
Multiple pregnancy-associated glycoproteins are secreted by Day 100 ovine placental tissue. Xie S, Green J, Bao B, Beckers J-F, Valdez KE, Hakami L, Roberts RM. Biology of Reproduction; 57(6):1384-1393.
Date published:
December 1, 1997
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.
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The antiproliferative and antiviral activities of IFN-τ variants in human cells. Alexenko AP, Leaman DW, Li J, Roberts RM. Journal of Interferon and Cytokine Research; 17(12):769-779.
Date published:
December 1, 1997
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.
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The diversity and evolutionary relationships of the pregnancy-associated glycoproteins, an aspartic proteinase subfamily consisting of many trophoblast-expressed genes. Xie S, Green J, Bixby JB, Szafranska B, Demartini JC, Hecht S, Roberts RM. Proceedings of the National Academy of Sciences of the United States of America; 94(24):12809-12816.
Date published:
November 25, 1997
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Single-cell analysis of regulatory gene expression in quiescent and activated mouse skeletal muscle satellite cells. Cornelison DDW, Wold BJ. Developmental Biology; 191(2):270-283.
Date published:
November 15, 1997
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D Cornelison.
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RNA aptamers to the peptidyl transferase inhibitor chloramphenicol. Burke DH, Hoffman DC, Brown A, Hansen M, Pardi A, Gold L. Chemistry and Biology; 4(11):833-843.
Date published:
November 1, 1997
Featured in this article:
Donald Burke-Agüero.
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New cell substrates for in vitro evaluation of microcystin hepato- cytotoxicity. Battle T, Touchard C, Moulsdale HJ, Dowsett B, Stacey GN. Toxicology in Vitro; 11(5):557-567.
Date published:
October 1, 1997
Featured in this article:
Gary Stacey.
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Investigation of the enzymatic mechanism of the yeast chorismate mutase by docking a transition state analog. Lin SL, Xu D, Li A, Rosen M, Wolfson HJ, Nussinov R. Journal of Molecular Biology; 271(5):838-845.
Date published:
September 5, 1997
Featured in this article:
Dong Xu.
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Characterization of the minute virus of mice P38 core promoter elements. Lorson C, Pintel DJ. Journal of Virology; 71(9):6568-6575.
Date published:
September 1, 1997
Featured in this article:
Christian Lorson.
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Upregulation of P2Y₂ nucleotide receptors in rat salivary gland cells during short-term culture. Turner JT, Weisman GA, Camden JM. American Journal of Physiology - Cell Physiology; 273(3 42-3):C1100-C1107.
Date published:
September 1, 1997
Featured in this article:
Gary Weisman.
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Structural motifs at protein-protein interfaces: Protein cores versus two-state and three-state model complexes. Tsai C-J, Xu D, Nussinov R. Protein Science; 6(9):1793-1805.
Date published:
September 1, 1997
Featured in this article:
Dong Xu.
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Effects of temperature and concentration on bovine lens α-crystallin secondary structure: A circular dichroism spectroscopic study. Farnsworth PN, Groth-Vasselli B, Greenfield NJ, Singh K. International Journal of Biological Macromolecules; 20(4):283-291.
Date published:
July 1, 1997
Featured in this article:
Kamlendra Singh.
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Antisense expression of the peptide transport gene AtPTR2-B delays flowering and arrests seed development in transgenic Arabidopsis plants. Song W, Koh S, Czako M, Marton L, Drenkard E, Becker JM, Stacey G. Plant Physiology; 114(3):927-935.
Date published:
July 1, 1997
Featured in this article:
Gary Stacey.
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Identification and characterization of P2Y₂ nucleotide receptors in human retinal pigment epithelial cells. Sullivan DM, Erb L, Anglade E, Weisman GA, Turner JT, Csaky KG. Journal of Neuroscience; 49(1):43-52.
Date published:
July 1, 1997
Featured in this article:
Gary Weisman.
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Prediction of protein supersecondary structures based on the artificial neural network method. Sun Z, Rao X, Peng L, Xu D. Protein Engineering; 10(7):763-769.
Date published:
July 1, 1997
Featured in this article:
Dong Xu.
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Pathogen-induced programmed cell death in tobacco. Mittler R, Simon L, Lam E. Journal of Cell Science; 110(11):1333-1344.
Date published:
June 1, 1997
Featured in this article:
Ron Mittler.
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A threshold nuclear level of the v-Rel oncoprotein is required for transformation of avian lymphocytes. Sachdev S, Diehl JA, McKinsey TA, Hans A, Hannink M. Oncogene; 14(21):2585-2594.
Date published:
May 26, 1997
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.
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RNA aptamers to the adenosine moiety of S-adenosyl methionine: Structural inferences from variations on a theme and the reproducibility of SELEX. Burke DH, Gold L. Nucleic Acids Research; 25(0):2020-2024.
Date published:
May 1, 1997
Featured in this article:
Donald Burke-Agüero.
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Characterization of nuclease activities and DNA fragmentation induced upon hypersensitive response cell death and mechanical stress. Mittler R, Lam E. Plant Molecular Biology; 34(2):209-221.
Date published:
May 1, 1997
Featured in this article:
Ron Mittler.
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Ethylene provides positional information on cortical cell division but is not involved in Nod factor-induced root hair tip growth in Rhizobium-legume interaction. Heidstra R, Yang WC, Yalcin Y, Peck S, Emons A, Van Kammen A, Bisseling T. Development; 124(9):1781-1787.
Date published:
May 1, 1997
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Scott Peck.
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Location and exposure of hydrophobic surfaces in relation to an ‘open’ micellar quaternary structure of alpha-crystallin. Farnsworth PN, Groth-Vasselli B, Kumosinski TF, Singh K. Experimental eye research; 64(5):853-855.
Date published:
May 1, 1997
Featured in this article:
Kamlendra Singh.
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NodV and NodW, a second flavonoid recognition system regulating nod gene expression in Bradyrhizobium japonicum. Loh J, Garcia M, Stacey G. Journal of Bacteriology; 179(9):3013-3020.
Date published:
May 1, 1997
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Gary Stacey.
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Adenovirus E3-10.4K/14.5K protein complex inhibits tumor necrosis factor-induced translocation of cytosolic phospholipase A2 to membranes. Dimitrov T, Krajcsi P, Hermiston TW, Tollefson AE, Hannink M, Wold WSM. Journal of Virology; 71(4):2830-2837.
Date published:
April 1, 1997
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.
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Expression of a plasmin/trypsin Kunitz inhibitor by pig trophoblast. Duffy JY, Stallings-Mann ML, Trout WE, Roberts RM. Molecular Reproduction and Development; 46(4):443-449.
Date published:
April 1, 1997
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.
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Authentication of animal cell cultures by direct visualization of repetitive DNA, aldolase gene PCR and isoenzyme analysis. Stacey GN, Hoelzl H, Stephenson JR, Doyle A. Biologicals; 25(1):75-85.
Date published:
March 1, 1997
Featured in this article:
Gary Stacey.
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A gene family of silicon transporters [5]. Hildebrand M, Volcani BE, Gassmann W, Schroeder JI. Nature; 385(6618):688-689.
Date published:
February 20, 1997
Featured in this article:
Walter Gassmann.
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Protein binding versus protein folding: The role of hydrophilic bridges in protein associations. Xu D, Lin SL, Nussinov R. Journal of Molecular Biology; 265(1):68-84.
Date published:
January 10, 1997
Featured in this article:
Dong Xu.
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The ankyrin repeat domain of I KB a mediates nuclear shuttling reduced control by iicb-a over nuclear localization of rel proteins contributes to oncogenic activation. Sachdev S, Hannink M. FASEB Journal; 11(9):A1065.
Date published:
January 1, 1997
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.
Fish vaccine antigens produced or delivered by recombinant DNA technologies. Leong JC, Anderson E, Bootland LM, Chiou PW, Johnson M, Kim C, Mourich D, Trobridge G. Developments in biological standardization; 90:267-277.
Date published:
January 1, 1997
Featured in this article:
Marc Johnson.
Interaction of dna with bovine lens cc-crystallin. Singh K, Groth-Vasselli B, Farnsworth PN. Investigative Ophthalmology and Visual Science; 38(4):S302.
Date published:
January 1, 1997
Featured in this article:
Kamlendra Singh.
Standardization in Animal Cell Technology. Stacey GN. Folia Microbiologica; 42(2):113-116.
Date published:
January 1, 1997
Featured in this article:
Gary Stacey.
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Chitin recognition in rice and legumes. Stacey G, Shibuya N. Plant and Soil; 194(1-2):161-169.
Date published:
January 1, 1997
Featured in this article:
Gary Stacey.
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Molecular signals exchanged between host plants and rhizobia: Basic aspects and potential application in agriculture. Hungria M, Stacey G. Soil Biology and Biochemistry; 29(5-6):819-830.
Date published:
January 1, 1997
Featured in this article:
Gary Stacey.
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Molecular studies on a new genetic locus linked to the common nodulation genes in Bradyrhizobium japonicum. Luka S, Stacey G. FEMS Microbiology Letters; 148(2):145-151.
Date published:
January 1, 1997
Featured in this article:
Gary Stacey.
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Immortalised hepatocytes as alternatives to the use of animals. Maguire T, Moulsdale HJ, Touchard G, Stacey GN. Genetic Engineer and Biotechnologist; 17(2-3):107-109.
Date published:
January 1, 1997
Featured in this article:
Gary Stacey.
Methods of detecting compounds which bind to the P2U receptor. Boucher Richard, Weisman Gary A, Turner John T, Harden Thomas K, Parr Claude, Sullivan Daniel, Erb Laura J, Lustig Kevin D. Biotechnology Advances; 15(3-4):752.
Date published:
January 1, 1997
Featured in this article:
Gary Weisman.
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Changes in P2Y₁ nucleotide receptor activity during the development of rat salivary glands. Park MK, Garrad RC, Weisman GA, Turner JT. American Journal of Physiology - Cell Physiology; 272(4 41-4):C1388-C1393.
Date published:
January 1, 1997
Featured in this article:
Gary Weisman.
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Upregulation of P2Y₂ nucleotide receptors in rat salivary gland cells during short-term culture. Turner JT, Weisman GA, Camden JM. American Journal of Physiology; 273(3 PART 1):C1057-C1063.
Date published:
January 1, 1997
Featured in this article:
Gary Weisman.
Specific binding between the v/33 integrin and an RGD domain of the P2Y2 nucleotide receptor. Erb L, Ockerhansen J, Garrad R, Gresham H, Weisman GA, Turner JT. FASEB Journal; 11(9):A1430.
Date published:
January 1, 1997
Featured in this article:
Gary Weisman.
Mechanisms of P2Y ₂ nucleotide receptor desensitization, implications for cystic fibrosis pharmacotherapy. Garrad RC, Otero MA, Erb L, Clarke LL, Gonzalez F, Turner JT, Weisman GA. FASEB Journal; 11(9):A1327.
Date published:
January 1, 1997
Featured in this article:
Gary Weisman.
Hydrogen bonds and salt bridges across protein-protein interfaces. Xu D, Tsai C-J, Nussinov R. Protein Engineering; 10(9):999-1012.
Date published:
January 1, 1997
Featured in this article:
Dong Xu.
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New and Atypical Families of Type I Interferons in Mammals: Comparative Functions, Structures, and Evolutionary Relationships. Roberts RM, Liu L, Alexenko A. Progress in Nucleic Acid Research and Molecular Biology; 56(C):287-325.
Date published:
January 1, 1997
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Molecular cloning of ovine and bovine type I interferon receptor subunits from uteri, and endometrial expression of messenger ribonucleic acid for ovine receptors during the estrous cycle and pregnancy. Han C-S, Mathialagan N, Klemann SW, Roberts RM. Endocrinology; 138(11):4757-4767.
Date published:
January 1, 1997
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Control of extracellular matrix remodelling within ovarian tissues: Localization and regulation of gene expression of plasminogen activator inhibitor type-1 within the ovine corpus luteum. Smith GW, Gentry PC, Bao B, Long DK, Roberts RM, Smith MF. Journal of Reproduction and Fertility; 110(1):107-114.
Date published:
January 1, 1997
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Effect of variants of interferon-τ with mutations near the carboxyl terminus on luteal life span in sheep. Niswender KD, Li J, Powell MR, Loos KR, Roberts RM, Keisler DH, Smith MF. Biology of Reproduction; 56(1):214-220.
Date published:
January 1, 1997
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Adenovirus-mediated gene transfer by perivitelline microinjection of mouse, rat, and cow embryos. Kubisch HM, Larson MA, Eichen PA, Wilson JM, Roberts RM. Biology of Reproduction; 56(1):119-124.
Date published:
January 1, 1997
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Silencing of the gene for the α-subunit of human chorionic gonadotropin by the embryonic transcription factor Oct-3/4. Liu L, Leaman D, Villalta M, Roberts RM. Molecular Endocrinology; 11(11):1651-1658.
Date published:
January 1, 1997
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1996
Bent pseudoknots and novel RNA inhibitors of type 1 human immunodeficiency virus (HIV-1) reverse transcriptase. Burke DH, Scates L, Andrews K, Gold L. Journal of Molecular Biology; 264(4):650-666.
Date published:
December 13, 1996
Featured in this article:
Donald Burke-Agüero.
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A comparison of structural relationships among α-crystallin, human Hsp27, γ-crystallins and βB2-crystallin. Singh K, Zewge D, Groth-Vasselli B, Farnsworth PN. International Journal of Biological Macromolecules; 19(4):227-233.
Date published:
December 1, 1996
Featured in this article:
Kamlendra Singh.
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Ligand-regulated transport of the Menkes copper P-type ATPase efflux pump from the Golgi apparatus to the plasma membrane: A novel mechanism of regulated trafficking. Petris MJ, Mercer JFB, Culvenor JG, Lockhart P, Gleeson PA, Camakaris J. EMBO Journal; 15(22):6084-6095.
Date published:
November 15, 1996
Featured in this article:
Michael Petris.
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Alkali cation selectivity of the wheat root high-affinity potassium transporter HKT1. Gassmann W, Rubio F, Schroeder JI. Plant Journal; 10(5):869-882.
Date published:
November 1, 1996
Featured in this article:
Walter Gassmann.
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Embryotoxicity of 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD): The embryonic vasculature is a physiological target for TCDD-induced DNA damage and apoptotic cell death in medaka (Orizias latipes). Cantrell SM, Lutz LH, Tillitt DE, Hannink M. Toxicology and Applied Pharmacology; 141(1):23-34.
Date published:
November 1, 1996
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Inhibition of programmed cell death in tobacco plants during a pathogen-induced hypersensitive response at low oxygen pressure. Mittler R, Shulaev V, Seskar M, Lam E. Plant Cell; 8(11):1991-2001.
Date published:
November 1, 1996
Featured in this article:
Ron Mittler.
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Effect of thiobase incorporation into duplex DNA during the polymerization reaction. Singh K, Groth-Vasselli B, Farnsworth PN, Rai DK. Research Communications in Molecular Pathology and Pharmacology; 94(2):129-140.
Date published:
November 1, 1996
Featured in this article:
Kamlendra Singh.
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The interferon-τ genes of the giraffe, a nonbovid species. Liu L, Leaman DW, Roberts RM. Journal of Interferon and Cytokine Research; 16(11):949-951.
Date published:
November 1, 1996
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Comparative modelling and analysis of amino acid substitutions suggests that the family of pregnancy-associated glycoproteins includes both active and inactive aspartic proteinases. Guruprasad K, Blundell TL, Xie S, Green J, Szafranska B, Nagel RJ, McDowell K, Baker CB, Roberts RM. Protein Engineering; 9(10):849-856.
Date published:
October 1, 1996
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The reverse two-hybrid system: A genetic scheme for selection against specific protein/protein interactions. Leanna CA, Hannink M. Nucleic Acids Research; 24(17):3341-3347.
Date published:
September 1, 1996
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Cooperative action of lipo-chitin nodulation signals on the induction of the early nodulin, ENOD2, in soybean roots. Minami E, Kouchi H, Carlson RW, Cohn JR, Kolli VK, Day RB, Ogawa T, Stacey G. Molecular Plant-Microbe Interactions; 9(7):574-583.
Date published:
September 1, 1996
Featured in this article:
Gary Stacey.
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Phenotypic characterization and regulation of the nolA gene of Bradyrhizobium japonicum. Garcia M, Dunlap J, Loh J, Stacey G. Molecular Plant-Microbe Interactions; 9(7):625-636.
Date published:
September 1, 1996
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Gary Stacey.
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Nodule development induced by mutants of Bradyrhizobium japonicum defective in cyclic B-glucan synthesis. Dunlap J, Minami E, Bhagwat AA, Keister DL, Stacey G. Molecular Plant-Microbe Interactions; 9(7):546-555.
Date published:
September 1, 1996
Featured in this article:
Gary Stacey.
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Oxidative damage to DNA constituents by iron-mediated Fenton reactions. The deoxyguanosine family. Henle ES, Luo Y, Gassmann W, Linn S. Journal of Biological Chemistry; 271(35):21177-21186.
Date published:
August 30, 1996
Featured in this article:
Walter Gassmann.
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High-affinity potassium uptake in plants. Walker NA, Sanders D, Maathuis FJM, Rubio F, Gassmann W, Schroeder JL. Science; 273(5277):977-979.
Date published:
August 16, 1996
Featured in this article:
Walter Gassmann.
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Protein response to external electric fields: Relaxation, hysteresis, and echo. Xu D, Phillips JC, Schulten K. Journal of Physical Chemistry; 100(29):12108-12121.
Date published:
July 18, 1996
Featured in this article:
Dong Xu.
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Expression of the early nodulin, ENOD40, in soybean roots in response to various lipo-chitin signal molecules. Minami E, Kouchi H, Cohn JR, Ogawa T, Stacey G. Plant Journal; 10(1):23-32.
Date published:
July 1, 1996
Featured in this article:
Gary Stacey.
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N-acetyl cysteine provides partial protection against TCDD-induced lethality in fish embryos. Cantrell SM, Hannink M, Tillitt D. Marine Environmental Research; 42(1-4):113-118.
Date published:
June 1, 1996
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A type I ovine interferon with limited similarity to IFN-α, IFN-ω and IFN-τ: Gene structure, biological properties and unusual species specificity. Liu L, Leaman DW, Bixby JA, Roberts RM. Biochimica et Biophysica Acta - Protein Structure and Molecular Enzymology; 1294(1):55-62.
Date published:
May 2, 1996
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PEST-dependent cytoplasmic retention of v-Rel by IκB-α: Evidence that IκB-α regulates cellular localization of c-Rel and v-Rel by distinct mechanisms. Rottjakob EM, Sachdev S, Leanna CA, McKinsey TA, Hannink M. Journal of Virology; 70(5):3176-3188.
Date published:
May 1, 1996
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High-performance liquid chromatography/continuous-flow liquid secondary ion mass spectrometry of flavonoid glycosides in leguminous plant extracts. Sumner LW, Paiva NL, Dixon RA, Geno PW. Journal of Mass Spectrometry; 31(5):472-485.
Date published:
May 1, 1996
Featured in this article:
Lloyd Sumner.
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Electrostatic parameters of the theoritical quaternary structure of bovine α-crystallin. Singh K, Groth-Vasselli B, Farnsworth PN. International Journal of Biological Macromolecules; 18(3):205-209.
Date published:
April 1, 1996
Featured in this article:
Kamlendra Singh.
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Template effect for O ₂ addition across cis-sulfur sites in nickel dithiolates. Grapperhaus CA, Darensbourg MY, Sumner LW, Russell DH. Journal of the American Chemical Society; 118(7):1791-1792.
Date published:
February 21, 1996
Featured in this article:
Lloyd Sumner.
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Structural relationships among α-crystallin, human HSP27, γ-crystallins and βB2-crystallin. Singh K, Groth-Vasselli B, Farnsworth PN. Investigative Ophthalmology and Visual Science; 37(3):S598.
Date published:
February 15, 1996
Featured in this article:
Kamlendra Singh.
Far UV-CD spectral analysis of bovine α-crystallin. Farnsworth PN, Singh K, Greenfield N, Groth-Vasselli B. Investigative Ophthalmology and Visual Science; 37(3):S598.
Date published:
February 15, 1996
Featured in this article:
Kamlendra Singh.
Cloning of the cDNAs coding for cat growth hormone and prolactin. Warren WC, Bentle KA, Bogosian G. Gene; 168(2):247-249.
Date published:
February 12, 1996
Featured in this article:
Wes Warren.
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Efficient transactivation of the minute virus of mice P38 promoter requires upstream binding of NS1. Lorson C, Burger LR, Mouw M, Pintel DJ. Journal of Virology; 70(2):834-842.
Date published:
February 1, 1996
Featured in this article:
Christian Lorson.
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Maternal recognition of pregnancy. Roberts RM, Xie S. Biology of Reproduction; 54(2):294-302.
Date published:
February 1, 1996
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Sacrifice in the face of foes: Pathogen-induced programmed cell death in plants. Mittler R, Lam E. Trends in Microbiology; 4(1):10-15.
Date published:
January 1, 1996
Featured in this article:
Ron Mittler.
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Plant genetic study of restricted nodulation in soybean. Qian D, Allen FL, Stacey G, Gresshoff PM. Crop Science; 36(2):234-249.
Date published:
January 1, 1996
Featured in this article:
Gary Stacey.
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Inhibition of nod gene expression in Bradyrhizobium japonicum by organic acids. Yuen JP-Y, Stacey G. Molecular Plant-Microbe Interactions; 9(5):424-428.
Date published:
January 1, 1996
Featured in this article:
Gary Stacey.
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Cloning of a second arabidopsis peptide transport gene. Song W, Steiner H-Y, Zhang L, Naider F, Stacey G, Becker JM. Plant Physiology; 110(1):171-178.
Date published:
January 1, 1996
Featured in this article:
Gary Stacey.
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Comparison between parental and variant soybean Bradyrhizobium strains with regard to the production of lipo-chitin nodulation signals, early stages of root infection, nodule occupancy, and N₂ fixation rates. Hungria M, Nishi CYM, Cohn J, Stacey G. Plant and Soil; 186(2):331-341.
Date published:
January 1, 1996
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Gary Stacey.
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NodZ of Bradyrhizobium extends the nodulation host range of Rhizobium by adding a fucosyl residue to nodulation signals. López-Lara IM, Blok-Tip L, Quinto C, Garcia ML, Stacey G, Bloemberg GV, Lamers GEM, Lugtenberg BJJ, Thomas-Oats JE, Spaink HP. Molecular Microbiology; 21(2):397-408.
Date published:
January 1, 1996
Featured in this article:
Gary Stacey.
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Increased production of peptide deformylase eliminates retention of formylmethionine in bovine somatotropin overproduced in Escherichia coli. Warren WC, Bentle KA, Schlittler MR, Schwane AC, O'Neil JP, Bogosian G. Gene; 174(2):235-238.
Date published:
January 1, 1996
Featured in this article:
Wes Warren.
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Cloned and transfected P2Y₄ receptors: Characterization of a suramin and PPADS-insensitive response to UTP. Charlton SJ, Brown CA, Weisman GA, Turner JT, Erb L, Boarder MR. British Journal of Pharmacology; 119(7):1301-1303.
Date published:
January 1, 1996
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Gary Weisman.
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PPADS and suramin as antagonists at cloned P₂Y- and P₂ᵤ-purinoceptors. Charlton SJ, Brown CA, Weisman GA, Turner JT, Erb L, Boarder MR. British Journal of Pharmacology; 118(3):704-710.
Date published:
January 1, 1996
Featured in this article:
Gary Weisman.
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Structure and function of P₂ purinoceptors. Weisman GA, Turner JT, Fedan JS. Journal of Pharmacology and Experimental Therapeutics; 277(1):1-9.
Date published:
January 1, 1996
Featured in this article:
Gary Weisman.
P2U purinoceptors: cDNA cloning, signal transduction mechanisms and structure-function analysis. Lustig KD, Weisman GA, Turner JT, Garrad R, Shiau AK, Erb L. CIBA Foundation Symposia; 198:193-207.
Date published:
January 1, 1996
Featured in this article:
Gary Weisman.
Molecular dynamics study of early picosecond events in the bacteriorhodopsin photocycle: Dielectric response, vibrational cooling and the J, K intermediates. Xu D, Martin C, Schulten K. Biophysical Journal; 70(1):453-460.
Date published:
January 1, 1996
Featured in this article:
Dong Xu.
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Trophoblast-specific processing and phosphorylation of pregnancy-associated glycoprotein-1 in day 15 to 25 sheep placenta. Xie S, Nagel RJ, Green J, Beckers J-F, Roberts RM. Biology of Reproduction; 54(1):122-129.
Date published:
January 1, 1996
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Ontogeny and regulation of luteinizing hormone receptor messenger ribonucleic acid Within the ovine corpus luteum. Smith GW, Gentry PC, Roberts RM, Smith MF. Biology of Reproduction; 54(1):76-83.
Date published:
January 1, 1996
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Interferon-τ and pregnancy. Michael Roberts R. Journal of Interferon and Cytokine Research; 16(4):271-273.
Date published:
January 1, 1996
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Differential gene expression within the ovine corpus luteum: Identification of secreted protein acidic and rich in cysteine as a major secretory product of small but not large luteal cells. Smith GW, Gentry PC, Long DK, Smith MF, Roberts RM. Endocrinology; 137(2):755-762.
Date published:
January 1, 1996
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Treatment with Recombinant Bovine Interferon-τ in Utero Attenuates Secretion of Prostaglandin F from Cultured Endometrial Epithelial Cells. Meyer MD, Desnoyers GD, Oldick B, Thatcher WW, Drost M, Schalue TK, Roberts RM. Journal of Dairy Science; 79(8):1375-1384.
Date published:
January 1, 1996
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Silencing of the gene for the β subunit of human chorionic gonadotropin by the embryonic transcription factor Oct-3/4. Liu L, Roberts RM. Journal of Biological Chemistry; 271(28):16683-16689.
Date published:
January 1, 1996
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1995
Cloning, expression, and chromosomal localization of the human uridine nucleotide receptor gene. Nguyen T, Erb L, Weisman GA, Marchese A, Heng HHQ, Garrad RC, George SR, Turner JT, O'Dowd BF. Journal of Biological Chemistry; 270(52):30845-30848.
Date published:
December 29, 1995
Featured in this article:
Gary Weisman.
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Sodium-driven potassium uptake by the plant potassium transporter HKT1 and mutations conferring salt tolerance. Rubio F, Gassmann W, Schroeder JI. Science; 270(5242):1660-1663.
Date published:
December 8, 1995
Featured in this article:
Walter Gassmann.
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Bradyrhizobium elkanii induces outer cortical root swelling in soybean. Yuhashi K-I, Akao S, Fukuhara H, Tateno E, Chun J-Y, Stacey G, Hara H, Kubota M, Asami T, Minamisawa K. Plant and Cell Physiology; 36(8):1571-1577.
Date published:
December 1, 1995
Featured in this article:
Gary Stacey.
A Three-Dimensional Model of Interferon-τ. Senda T, Saitoh S-I, Mitsui Y, Li J, Roberts RM. Journal of Interferon and Cytokine Research; 15(12):1053-1060.
Date published:
December 1, 1995
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.
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Identification, characterization, and purification of a tobacco endonuclease activity induced upon hypersensitive response cell death. Mittler R, Lam E. Plant Cell; 7(11):1951-1962.
Date published:
November 1, 1995
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Ron Mittler.
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Gene amplification of the menkes (MNK; ATP7A) P-type ATPase gene of CHO cells is associated with copper resistance and enhanced copper efflux. Camakaris J, Petris MJ, Bailey L, Shen P, Lockhart P, Glover TW, Barcroft CL, Patton J, Mercer JFB. Human Molecular Genetics; 4(11):2117-2123.
Date published:
November 1, 1995
Featured in this article:
Michael Petris.
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Identification of strong modifications in cation selectivity in an Arabidopsis inward rectifying potassium channel by mutant selection in yeast. Uozumí N, Gassmann W, Cao Y, Schroeder JI. Journal of Biological Chemistry; 270(41):24276-24281.
Date published:
October 13, 1995
Featured in this article:
Walter Gassmann.
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α-Crystallin quaternary structure: molecular basis for its chaperone activity. Singh K, Groth-Vasselli B, Kumosinski TF, Farnsworth PN. FEBS Letters; 372(2-3):283-287.
Date published:
September 25, 1995
Featured in this article:
Kamlendra Singh.
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Iκ-B-α-mediated inhibition of nuclear transport and DNA-binding by Rel proteins are separable functions: Phosphorylation of C-terminal serine residues of IκB-α is specifically required for inhibition of DNA-binding. Sachdev S, Rottjakob EM, Diehl JA, Hannink M. Oncogene; 11(5):811-823.
Date published:
September 7, 1995
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Predicting the structure of the light‐harvesting complex II of rhodospirillum molischianum. Hu X, Xu D, Hamer K, Schulten K, Koepke J, Michel H. Protein Science; 4(9):1670-1682.
Date published:
September 1, 1995
Featured in this article:
Dong Xu.
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Structural requirements of synthetic and natural product lipo-chitin oligosaccharides for induction of nodule primordia on Glycine soja. Stokkermans TJW, Ikeshita S, Cohn J, Carlson RW, Stacey G, Ogawa T, Peters NK. Plant Physiology; 108(4):1587-1595.
Date published:
August 1, 1995
Featured in this article:
Gary Stacey.
Pronuclear visibility, development and transgene expression in IVM/IVF-derived porcine embryos. Kubish H-M, Larson MA, Funahashi H, Day BN, Roberts RM. Theriogenology; 44(3):391-401.
Date published:
August 1, 1995
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A Bifunctional Vector Suitable for Both Site-Directed Mutagenesis and Recombinant Expression of Interferon-τ in Escherichia coli. Li JZ, Alexenko AP, Roberts RM. Protein Expression and Purification; 6(4):401-407.
Date published:
August 1, 1995
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In situ detection of nDNA fragmentation during the differentiation of tracheary elements in higher plants. Mittler R, Lam E. Plant Physiology; 108(2):489-493.
Date published:
June 1, 1995
Featured in this article:
Ron Mittler.
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Sequential induction of the ethylene biosynthetic enzymes by indole-3-acetic acid in etiolated peas. Peck SC, Kende H. Plant Molecular Biology; 28(2):293-301.
Date published:
May 1, 1995
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Scott Peck.
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Rapid communication: nucleotide sequence of the promoter and first exon of the somatotropin receptor gene in cattle. Heap D, Lucy MC, Collier RJ, Boyd CK, Warren WC. Journal of Animal Science; 73(5):1529.
Date published:
May 1, 1995
Featured in this article:
Wes Warren.
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Signal exchange in the Bradyrhizobium-soybean symbiosis. Stacey G, Sanjuan J, Luka S, Dockendorff T, Carlson RW. Soil Biology and Biochemistry; 27(4-5):473-483.
Date published:
April 1, 1995
Featured in this article:
Gary Stacey.
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G protein-coupled P₂ purinoceptors: from molecular biology to functional responses. Boarder MR, Weisman GA, Turner JT, Wilkinson GF. Trends in Pharmacological Sciences; 16(4):133-139.
Date published:
April 1, 1995
Featured in this article:
Gary Weisman.
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Concerted participation of NF-κB and C/EBP heteromer in lipopolysaccharide induction of serum amyloid A gene expression in liver. Ray A, Hannink M, Ray BK. Journal of Biological Chemistry; 270(13):7365-7374.
Date published:
March 31, 1995
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Bradyrhizobium japonicum nodulation genetics. Stacey G. FEMS Microbiology Letters; 127(1-2):1-9.
Date published:
March 15, 1995
Featured in this article:
Gary Stacey.
Site-directed mutagenesis of P₂ᵤ purinoceptors: Positively charged amino acids in transmembrane helices 6 and 7 affect agonist potency and specificity. Erb L, Garrad R, Wang Y, Quinn T, Turner JT, Weisman GA. Journal of Biological Chemistry; 270(9):4185-4188.
Date published:
March 3, 1995
Featured in this article:
Gary Weisman.
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Tumor necrosis factor-α-dependent activation of a RelA homodimer in astrocytes: Increased phosphorylation of RelA and MAD-3 precede activation of RelA. Diehl JA, Tong W, Sun G, Hannink M. Journal of Biological Chemistry; 270(6):2703-2707.
Date published:
February 10, 1995
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Purification, characterization, and submitochondrial localization of a 58-kilodalton NAD(P)H dehydrogenase. Luethy MH, Thelen JJ, Knudten AF, Elthon TE. Plant Physiology; 107(2):443-450.
Date published:
February 1, 1995
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Jay Thelen.
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Coordinated activation of programmed cell death and defense mechanisms in transgenic tobacco plants expressing a bacterial proton pump. Mittler R, Shulaev V, Lam E. Plant Cell; 7(1):29-42.
Date published:
January 1, 1995
Featured in this article:
Ron Mittler.
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Advances in computer technology: Impact on the practice of medicine. Groth-Vasselli B, Singh K, Farnsworth PN. Journal of Medicine; 26(5-6):323-330.
Date published:
January 1, 1995
Featured in this article:
Kamlendra Singh.
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The European Tissue Culture Society (ETCS) initiative on quality control of cell lines. Stacey GN, Parodi B, Doyle A. Journal of Experimental and Clinical Cancer Research; 14(1 SUPPL):210-211.
Date published:
January 1, 1995
Featured in this article:
Gary Stacey.
Molecular dynamics study of the early intermediates in the bacteriorhodopsin photocycle. Humphrey W, Xu D, Sheves M, Schulten K. Journal of Physical Chemistry; 99(39):14549-14560.
Date published:
January 1, 1995
Featured in this article:
Dong Xu.
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Temperature quench echoes in proteins. Xu D, Schulten K, Becker OM, Karplus M. The Journal of Chemical Physics; 103(8):3112-3123.
Date published:
January 1, 1995
Featured in this article:
Dong Xu.
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Velocity reassignment echoes in proteins. Xu D, Schulten K. The Journal of Chemical Physics; 103(8):3124-3139.
Date published:
January 1, 1995
Featured in this article:
Dong Xu.
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Molecular dynamics study of the M412 intermediate of bacteriorhodopsin. Xu D, Sheves M, Schulten K. Biophysical Journal; 69(6):2745-2760.
Date published:
January 1, 1995
Featured in this article:
Dong Xu.
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Molecular Dynamics Studies of Bacteriorhodopsin’s Photocycles. Schulten K, Humphrey W, Logunov I, Sheves M, Xu D. Israel Journal of Chemistry; 35(3-4):447-464.
Date published:
January 1, 1995
Featured in this article:
Dong Xu.
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Expression of two transgenes in in vitro matured and fertilized bovine zygotes after DNA microinjection. Kubish H-M, Hernandez-Ledezman JJ, Larson MA, Sikes JD, Roberts RM. Journal of Reproduction and Fertility; 104(1):133-139.
Date published:
January 1, 1995
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The gene encoding bovine pregnancy-associated glycoprotein-1, an inactive member of the aspartic proteinase family. Xie S, Green J, Beckers J-F, Roberts RM. Gene; 159(2):193-197.
Date published:
January 1, 1995
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Effect of Bovine Interferon-τ on Body Temperature and Plasma Progesterone Concentrations in Cyclic Dairy Cows. Meyer MD, Hansen PJ, Thatcher WW, Drost M, Roberts RM. Journal of Dairy Science; 78(7):1470-1476.
Date published:
January 1, 1995
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Extension of Corpus Luteum Lifespan and Reduction of Uterine Secretion of Prostaglandin F2α of Cows in Response to Recombinant Interferon-τ. Meyer MD, Hansen PJ, Thatcher WW, Drost M, Badinga L, Roberts RM, Li J, Ott TL, Bazer FW. Journal of Dairy Science; 78(9):1921-1931.
Date published:
January 1, 1995
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Regulation and regulatory role of proteinase inhibitors. Roberts RM, Mathialagan N, Duffy JY, Smith GW. Critical Reviews in Eukaryotic Gene Expression; 5(3-4):385-436.
Date published:
January 1, 1995
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Porcine pregnancy-associated glycoproteins: New members of the aspartic proteinase gene family expressed in trophectoderm. Szafranska B, Xie S, Green J, Roberts RM. Biology of Reproduction; 53(1):21-28.
Date published:
January 1, 1995
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1994
The biosynthesis of rhizobial lipo-oligosaccharide nodulation signal molecules. Carlson RW, Price NP, Stacey G. Molecular Plant-Microbe Interactions; 7(6):684-695.
Date published:
November 1, 1994
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Gary Stacey.
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Purification, characterization, and submitochondrial localization of the 32-kilodalton NADH dehydrogenase from maize. Knudten AF, Thelen JJ, Luethy MH, Elthon TE. Plant Physiology; 106(3):1115-1122.
Date published:
November 1, 1994
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Jay Thelen.
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Identification of a C/EBP-Rel complex in avian lymphoid cells. Diehl JA, Hannink M. Molecular and Cellular Biology; 14(10):6635-6646.
Date published:
October 1, 1994
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Purification, characterization, and cDNA cloning of a Kunitz-type proteinase inhibitor secreted by the porcine uterus. Stallings-Mann ML, Burke MG, Trout WE, Roberts RM. Journal of Biological Chemistry; 269(39):24090-24094.
Date published:
September 30, 1994
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An Arabidopsis peptide transporter is a member of a new class of membrane transport proteins. Steiner H-Y, Song W, Zhang L, Naider F, Becker JM, Stacey G. Plant Cell; 6(9):1289-1299.
Date published:
September 1, 1994
Featured in this article:
Gary Stacey.
Inward-rectifying K+ channels in root hairs of wheat. A mechanism for aluminum-sensitive low-affinity K+ uptake and membrane potential control. Gassmann W, Schroeder JI. Plant Physiology; 105(4):1399-1408.
Date published:
August 1, 1994
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Walter Gassmann.
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Classification of P₂ purinoceptors. Not all G protein-coupled P₂ purinoceptors can be classed as P₂y. Boarder MR, Turner JT, Erb L, Weisman GA. Trends in Pharmacological Sciences; 15(8):280.
Date published:
August 1, 1994
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Gary Weisman.
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Functional assignment of Erwinia herbicola Eho10 carotenoid genes expressed in Escherichia coli. Hundle B, Alberti M, Nievelstein V, Beyer P, Kleinig H, Armstrong GA, Burke DH, Hearst JE. MGG Molecular & General Genetics; 245(4):406-416.
Date published:
July 1, 1994
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Donald Burke-Agüero.
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Perspectives on the physiology and structure of inward-rectifying K+ channels in higher plants: Biophysical implications for K+ uptake. Schroeder JI, Ward JM, Gassmann W. Annual Review of Biophysics and Biomolecular Structure; 23:441-471.
Date published:
June 1, 1994
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Walter Gassmann.
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Coupling of protein motion to electron transfer in a photosynthetic reaction center: investigating the low temperature behavior in the framework of the spin-boson model. Xu D, Schulten K. Chemical Physics; 182(2-3):91-117.
Date published:
May 1, 1994
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Dong Xu.
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Multiple regulatory elements are required to direct trophoblast interferon gene expression in choriocarcinoma cells and trophectoderm. Leaman DW, Cross JC, Roberts RM. Molecular Endocrinology; 8(4):456-468.
Date published:
April 1, 1994
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Regulation of pea cytosolic ascorbate peroxidase and other antioxidant enzymes during the progression of drought stress and following recovery from drought. Mittler R, Zilinskas BA. The Plant Journal; 5(3):397-405.
Date published:
March 1, 1994
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Ron Mittler.
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Identification and characterization of the nolYZ genes of Bradyrhizobium japonicum. Dockendorff TC, Sharma AJ, Stacey G. Molecular Plant-Microbe Interactions; 7(2):173-180.
Date published:
March 1, 1994
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Gary Stacey.
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A Bradyrhizobium japonicum gene essential for nodulation competitiveness is differentially regulated from two promoters. Chun J-Y, Stacey G. Molecular Plant-Microbe Interactions; 7(2):248-255.
Date published:
March 1, 1994
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Gary Stacey.
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Identification and characterization of a novel Bradyrhizobium japonicum gene involved in host-specific nitrogen fixation. Chun J-Y, Sexton GL, Roth LE, Stacey G. Journal of Bacteriology; 176(21):6717-6729.
Date published:
January 1, 1994
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Gary Stacey.
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NodW is essential for full expression of the common nodulation genes in Bradyrhizobium japonicum. Sanjuan J, Grob P, Gottfert M, Hennecke H, Stacey G. Molecular Plant-Microbe Interactions; 7(3):364-369.
Date published:
January 1, 1994
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Gary Stacey.
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NoIA represses nod gene expression in Bradyrhizobium japonicum. Dockendorff TC, Sanjuan J, Grob P, Stacey G. Molecular Plant-Microbe Interactions; 7(5):569-602.
Date published:
January 1, 1994
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Gary Stacey.
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nodZ, a unique host-specific nodulation gene, is involved in the fucosylation of the lipooligosaccharide nodulation signal of Bradyrhizobium japonicum. Stacey G, Luka S, Sanjuan J, Banfalvi Z, Nieuwkoop AJ, Chun J-Y, Forsberg LS, Carlson R. Journal of Bacteriology; 176(3):620-633.
Date published:
January 1, 1994
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Gary Stacey.
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Cloning and expression of a human P(2U) nucleotide receptor, a target for cystic fibrosis pharmacotherapy. Parr CE, Sullivan DM, Paradiso AM, Lazarowski ER, Burch LH, Olsen JC, Erb L, Weisman GA, Boucher RC, Turner JT. Proceedings of the National Academy of Sciences of the United States of America; 91(8):3275-3279.
Date published:
January 1, 1994
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Gary Weisman.
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Erratum: Cloning and expression of a human P(2U) nucleotide receptor, a target for cystic fibrosis pharmacotherapy (Proceedings of the National Academy of Sciences of the United States of America (April 12, 1994) 91:8 (3275-3279)). Parr CE, Sullivan DM, Paradiso AM, Lazarowski ER, Burch LH, Olsen JC, Erb L, Weisman GA, Boucher RC, Turner JT. Proceedings of the National Academy of Sciences of the United States of America; 91(26):13067.
Date published:
January 1, 1994
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Gary Weisman.
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A role for cytokines in early pregnancy. Mathialagan N, Roberts RM. Indian Journal of Physiology and Pharmacology; 38(3):153-162.
Date published:
January 1, 1994
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Structure-function relationships in the interferon-τ (IFN-τ). Changes in receptor binding and in antiviral and antiproliferative activities resulting from site-directed mutagenesis performed near the carboxyl terminus. Li J, Roberts RM. Journal of Biological Chemistry; 269(40):24826-24833.
Date published:
January 1, 1994
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Interferon-τ and interferon-α interact with the same receptors in bovine endometrium. Use of a readily iodinatable form of recombinant interferon-τ for binding studies. Li J, Roberts RM. Journal of Biological Chemistry; 269(18):13544-13550.
Date published:
January 1, 1994
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Selective cloning of cDNA for secretory proteins of early embryos. Identification of a transiently expressed Kunitz domain protein from preimplantation sheep trophoblast. Kramer KK, Duffy JY, Klemann SW, Bixby JA, Low BG, Pope WF, Roberts RM. Journal of Biological Chemistry; 269(10):7255-7261.
Date published:
January 1, 1994
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Molécules de la famille des protéases aspartiques dans le placenta des ruminants: hormones ou protéines? [Molecules of the family of aspartic proteinases in the placenta of ruminants: hormones or proteins?]. Beckers JF, Roberts RM, Zoli AP, Ectors F, Derivaux J. Bulletin et mémoires de l'Académie royale de médecine de Belgique; 149(8-11):355-367.
Date published:
January 1, 1994
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A novel glycoprotein of the aspartic proteinase gene family expressed in bovine placental trophectoderm. Xie S, Low BG, Nagel RJ, Beckers J-F, Roberts RM. Biology of Reproduction; 51(6):1145-1153.
Date published:
January 1, 1994
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1993
Heterologous C-terminal sequences disrupt transcriptional activation and oncogenesis by p59(v-rel). Diehl JA, Hannink M. Journal of Virology; 67(12):7161-7171.
Date published:
December 1, 1993
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Spi-1: an hepatic serine protease inhibitor regulated by GH and other hormones. Warren WC, Munie GE, Glenn KC. Molecular and Cellular Endocrinology; 98(1):27-32.
Date published:
December 1, 1993
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Wes Warren.
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Functional expression and photoaffinity labeling of a cloned P₂ᵤ purinergic receptor. Erb L, Lustig KD, Sullivan DM, Turner JT, Weisman GA. Proceedings of the National Academy of Sciences of the United States of America; 90(22):10449-10453.
Date published:
November 15, 1993
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Gary Weisman.
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Expression of bovine trophoblast interferons by in vitro‐derived blastocysts is correlated with their morphological quality and stage of development. Hernandez-Ledezma JJ, Mathialagan N, Villanueva C, Sikes JD, Roberts RM. Molecular Reproduction and Development; 36(1):1-6.
Date published:
September 1, 1993
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Circularly permuted tRNAs as specific photoaffinity probes of ribonuclease P RNA structure. Nolan JM, Burke DH, Pace NR. Science; 261(5122):762-765.
Date published:
August 6, 1993
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Donald Burke-Agüero.
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Early evolution of photosynthesis: Clues from nitrogenase and chlorophyll iron proteins. Burke DH, Hearst JE, Sidow A. Proceedings of the National Academy of Sciences of the United States of America; 90(15):7134-7138.
Date published:
August 1, 1993
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Donald Burke-Agüero.
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Detection of ascorbate peroxidase activity in native gels by inhibition of the ascorbate-dependent reduction of nitroblue tetrazolium. Mittler R, Zilinskas BA. Analytical Biochemistry; 212(2):540-546.
Date published:
August 1, 1993
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Ron Mittler.
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Detection of mRNA for inhibin α- and βA-subunits in bovine ovarian tissues and the effect of in vivo administration of GNRH. Juengel JL, Imakawa K, Farin PW, Youngquist RS, Roberts RM, Smith MF, Garverick HA. Domestic Animal Endocrinology; 10(3):207-218.
Date published:
July 1, 1993
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Effects of CZB versus medium 199 and of conditioning culture media with either bovine oviductal epithelial cells or buffalo rat liver cells on the development of bovine zygotes derived by in vitro maturation-in vitro fertilization procedures. Hernandez-Ledezma JJ, Villanueva C, Sikes JD, Roberts RM. Theriogenology; 39(6):1267-1277.
Date published:
June 1, 1993
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Regulation of carotenoid and bacteriochlorophyll biosynthesis genes and identification of an evolutionarily conserved gene required for bacteriochlorophyll accumulation. Armstrong GA, Cook DN, Ma D, Alberti M, Burke DH, Hearst JE. Journal of General Microbiology; 139(5):879-906.
Date published:
May 1, 1993
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Donald Burke-Agüero.
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Determination of cinnamic acid and 4‐coumaric acid in alfalfa (Medicago sativa L.) cell suspension cultures by gas chromatography. Orr JD, Sumner LW, Edwards R, Dixon RA. Phytochemical Analysis; 4(3):124-130.
Date published:
May 1, 1993
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Lloyd Sumner.
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The Rhodobacter capsulatus chlorin reductase-encoding locus, bchA, consists of three genes, bchX, bchY, and bchZ. Burke DH, Alberti M, Hearst JE. Journal of Bacteriology; 175(8):2407-2413.
Date published:
April 1, 1993
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Donald Burke-Agüero.
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bchFNBH Bacteriochlorophyll synthesis genes of Rhodobacter capsulatus and identification of the third subunit of light-independent protochlorophyllide reductase in bacteria and plants. Burke DH, Alberti M, Hearst JE. Journal of Bacteriology; 175(8):2414-2422.
Date published:
April 1, 1993
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Donald Burke-Agüero.
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A novel mobile phase for continuous‐flow liquid secondary ion mass spectrometry of high molecular mass phthalocyanines. Sumner LW, Ford WT, Chang YH, Choi KH, Lee JJ. Organic Mass Spectrometry; 28(4):475-477.
Date published:
April 1, 1993
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Lloyd Sumner.
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The chlL (frxC) gene: Phylogenetic distribution in vascular plants and DNA sequence from Polystichum acrostichoides (Pteridophyta) and Synechococcus sp. 7002 (Cyanobacteria). Burke DH, Raubeson LA, Alberti M, Hearst JE, Jordan ET, Kirch SA, Valinski AEC, Conant DS, Stein DB. Plant Systematics and Evolution; 187(1-4):89-102.
Date published:
March 1, 1993
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Donald Burke-Agüero.
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Differential pp40(IκB-β) inhibition of DNA binding by rel proteins. Diehl JA, McKinsey TA, Hannink M. Molecular and Cellular Biology; 13(3):1769-1778.
Date published:
March 1, 1993
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Signal Transduction Pathways Coupled to a P₂ᵤ Receptor in Neuroblastoma × Glioma (NG108‐15) Cells. Lin T-A, Lustig KD, Sportiello MG, Weisman GA, Sun GY. Journal of Neurochemistry; 60(3):1115-1125.
Date published:
March 1, 1993
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Gary Weisman.
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Erratum: Molecular cloning and characterization of a gene encoding pea cytosolic ascorbate peroxidase (Journal of Biological Chemistry (1992) 267 (21802-21807)). Mittler R, Zilinskas BA. Journal of Biological Chemistry; 268(6):4568.
Date published:
February 25, 1993
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Ron Mittler.
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A cDNA sequence encoding 1-aminocyclopropane-1-carboxylate oxidase from pea. Peck SC, Olson DC, Kende H. Plant Physiology; 101(2):689-690.
Date published:
February 1, 1993
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Scott Peck.
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Alteration of plant growth and development by Rhizobium nodA and nodB genes involved in the synthesis of oligosaccharide signal molecules. Schmidt J, Röhrig H, John M, Wieneke U, Stacey G, Koncz C, Schell J. Plant Journal; 4(4):651-658.
Date published:
January 1, 1993
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Gary Stacey.
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Diversity of retron elements in a population of rhizobia and other gram- negative bacteria. Rice SA, Bieber J, Chun J-Y, Stacey G, Lampson BC. Journal of Bacteriology; 175(13):4250-4254.
Date published:
January 1, 1993
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Gary Stacey.
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The structures and biological activities of the lipo-oligosaccharide nodulation signals produced by type I and II strains of Bradyrhizobium japonicum. Carlson RW, Sanjuan J, Bhat UR, Glushka J, Spaink HP, Wijfjes AHM, Van Brussel AAN, Stokkermans TJW, Peters NK, Stacey G. Journal of Biological Chemistry; 268(24):18372-18381.
Date published:
January 1, 1993
Featured in this article:
Gary Stacey.
nolMNO genes of Bradyrhizobium japonicum are co-transcribed with nodYABCSUIJ, and nolO is involved in the synthesis of the lipo- oligosaccharide nodulation signals. Luka S, Sanjuan J, Carlson RW, Stacey G. Journal of Biological Chemistry; 268(36):27053-27059.
Date published:
January 1, 1993
Featured in this article:
Gary Stacey.
Extracellular ATP reversibly increases the plasma membrane permeability of transformed mouse fibroblasts to large macromolecules. Saribas AS, Lustig KD, Zhang X, Weisman GA. Analytical Biochemistry; 209(1):45-52.
Date published:
January 1, 1993
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Gary Weisman.
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Uteroferrin and intracellular tartrate-resistant acid phosphatases are the products of the same gene. Ling P, Roberts RM. Journal of Biological Chemistry; 268(10):6896-6902.
Date published:
January 1, 1993
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Porcine uterine retinol-binding proteins are identical gene products to the serum retinol-binding protein. Stallings-Mann ML, Trout WE, Roberts RM. Biology of Reproduction; 48(5):998-1005.
Date published:
January 1, 1993
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Embryo-uterine interactions in pigs during week 2 of pregnancy. Roberts RM, Xie S, Trout WE. Journal of reproduction and fertility. Supplement; 48:171-186.
Date published:
January 1, 1993
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Interferon-tau [3]. Roberts RM. Nature; 362(6421):583.
Date published:
January 1, 1993
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Overexpression of uteroferrin, a lysosomal acid phosphatase found in porcine uterine secretions, results in its high rate of secretion from transfected fibroblasts. Ling P, Roberts RM. Biology of Reproduction; 49(6):1317-1327.
Date published:
January 1, 1993
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1992
Quantification and cellular localization of ovine placental lactogen messenger ribonucleic acid expression during mid- and late gestation. Kappes SM, Warren WC, Pratt SL, Liang R, Anthony RV. Endocrinology; 131(6):2829-2838.
Date published:
December 1, 1992
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Wes Warren.
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Localization of the Ethylene-Forming Enzyme from Tomatoes, 1-Aminocyclopropane-1-Carboxylate Oxidase, in Transgenic Yeast. Peck SC, Reinhardt D, Olson DC, Boller T, Kende H. Journal of Plant Physiology; 140(6):681-686.
Date published:
November 1, 1992
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Scott Peck.
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Tissue repair by thrombin-derived peptides in the rat. Warren WC, Mustoe TA, Glenn KC. Peptide Research; 5(6):331-335.
Date published:
November 1, 1992
Featured in this article:
Wes Warren.
Molecular cloning and characterization of a gene encoding pea cytosolic ascorbate peroxidase. Mittler R, Zilinskas BA. Journal of Biological Chemistry; 267(30):21802-21807.
Date published:
October 25, 1992
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Ron Mittler.
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Inhibition of lymphocyte proliferation by bovine trophoblast protein-1 (Type I trophoblast interferon) and bovine interferon-αI1. Skopets B, Li J, Thatcher WW, Roberts RM, Hansen PJ. Veterinary Immunology and Immunopathology; 34(1-2):81-96.
Date published:
October 1, 1992
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Ruminant placental lactogens: structure and biology. Byatt JC, Warren WC, Eppard PJ, Staten NR, Krivi GG, Collier RJ. Journal of Animal Science; 70(9):2911-2923.
Date published:
September 1, 1992
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Wes Warren.
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The v-rel oncogene: Insights into the mechanism of transcriptional activation, repression, and transformation. Walker WH, Stein B, Ganchi PA, Hoffman JA, Kaufman PA, Ballard DW, Hannink M, Greene WC. Journal of Virology; 66(8):5018-5029.
Date published:
August 1, 1992
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Interferons as hormones of pregnancy. Roberts RM, Cross JC, Leaman DW. Endocrine Reviews; 13(3):432-452.
Date published:
August 1, 1992
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Expression of interleukin‐6 in porcine, ovine, and bovine preimplantation conceptuses. Mathialagan N, Bixby JA, Roberts RM. Molecular Reproduction and Development; 32(4):324-330.
Date published:
August 1, 1992
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Role of Interferons in Maternal Recognition of Pregnancy in Ruminants. Roberts, Leaman DW, Cross JC. Proceedings of the Society for Experimental Biology and Medicine; 200(1)7-18.
Date published:
May 1, 1992
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Steroid regulation of the synthesis and secretion of retinol-binding protein by the uterus of the pig. Trout WE, Hall JA, Stallings-Mann ML, Galvin JM, Anthony RV, Michael Roberts R. Endocrinology; 130(5):2557-2564.
Date published:
May 1, 1992
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Metal-ion-directed site-specificity of hydroxyl radical detection. Gelvan D, Moreno V, Gassmann W, Hegenauer J, Saltman P. BBA - General Subjects; 1116(2):183-191.
Date published:
April 22, 1992
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Walter Gassmann.
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Citrate is a major component of snake venoms. Freitas MA, Geno PW, Sumner LW, Cooke ME, Hudiburg SA, Ownby CL, Kaiser II, Odell GV. Toxicon; 30(4):461-464.
Date published:
April 1, 1992
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Lloyd Sumner.
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A unique ascorbate peroxidase active component in the cyanobacterium synechococcus PCC 7942 (r2). Rozen A, Mittler R, Burstein Y, Tel-or E. Free Radical Research; 17(1):1-8.
Date published:
March 25, 1992
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Ron Mittler.
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Mechanisms by which extracellular ATP and UTP stimulate the release of prostacyclin from bovine pulmonary artery endothelial cells. Lustig KD, Erb L, Landis DM, Hicks-Taylor CS, Zhang X, Sportiello MG, Weisman GA. BBA - Molecular Cell Research; 1134(1):61-72.
Date published:
February 19, 1992
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Gary Weisman.
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Multilocus DNA fingerprint analysis of cellbanks: Stability studies and culture identification in human B-lymphoblastoid and mammalian cell lines. Stacey GN, Bolton BJ, Morgan D, Clark SA, Doyle A. Cytotechnology; 8(1):13-20.
Date published:
February 1, 1992
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Gary Stacey.
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Genes for the Trophoblast Interferons in Sheep, Goat, and Musk Ox and Distribution of Related Genes Among Mammals. Leaman DW, Roberts RM. Journal of Interferon Research; 12(1):1-11.
Date published:
February 1, 1992
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Detection and separation of Rhizobium and Bradyrhizobium Nod metabolites using thin-layer chromatography. Spaink HP, Aarts A, Stacey G, Bloemberg GV, Lugtenberg BJ, Kennedy EP. Molecular plant-microbe interactions : MPMI; 5(1):72-80.
Date published:
January 1, 1992
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Gary Stacey.
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Bradyrhizobium japonicum nodD₁ can be specifically induced by soybean flavonoids that do not induce the nodYABCSUIJ operon. Smit G, Puvanesarajah V, Carlson RW, Barbour WM, Stacey G. Journal of Biological Chemistry; 267(1):310-318.
Date published:
January 1, 1992
Featured in this article:
Gary Stacey.
A 2-O-methylfucose moiety is present in the lipo-oligosaccharide nodulation signal of Bradyrhizobium japonicum. Sanjuan J, Carlson RW, Spaink HP, Bhat UR, Barbour WM, Glushka J, Stacey G. Proceedings of the National Academy of Sciences of the United States of America; 89(18):8789-8793.
Date published:
January 1, 1992
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Gary Stacey.
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Expression of a calmodulin methylation mutant affects the growth and development of transgenic tobacco plants. Roberts DM, Besl L, Suk-Heung OH, Masterson RV, Schell J, Stacey G. Proceedings of the National Academy of Sciences of the United States of America; 89(17):8394-8398.
Date published:
January 1, 1992
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Gary Stacey.
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A nucleotide receptor in vascular endothelial cells is specifically activated by the fully ionized forms of ATP and UTP. Lustig KD, Sportiello MG, Erb L, Weisman GA. Biochemical Journal; 284(3):733-739.
Date published:
January 1, 1992
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Gary Weisman.
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Luteal function after intrauterine infusion of recombinant bovine interferon-α(I)1 into postpartum beef cows expected to have short or normal luteal phases. Garverick HA, Moser MT, Keisler DH, Hamilton SA, Roberts RM, Smith MF. Journal of Reproduction and Fertility; 94(2):319-325.
Date published:
January 1, 1992
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Genes for the trophoblast interferons and their distribution among mammals. Leaman DW, Cross JC, Roberts RM. Reproduction, Fertility and Development; 4(3):349-353.
Date published:
January 1, 1992
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Expression of bovine trophoblast interferon in conceptuses derived by in vitro techniques. Hernandez-Ledezma JJ, Sikes JD, Murphy CN, Watson AJ, Schultz GA, Roberts RM. Biology of Reproduction; 47(3):374-380.
Date published:
January 1, 1992
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1991
Purification and characterization of pea cytosolic ascorbate peroxidase. Mittler R, Zilinskas BA. Plant Physiology; 97(3):962-968.
Date published:
November 1, 1991
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Ron Mittler.
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Quantitative immunogold ultracryomicrotome studies of the distribution of periimplantation proteins in the sheep. Wooding FBP, Morgan G, Roberts RM. Cell and Tissue Research; 266(2):417.
Date published:
November 1, 1991
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MINDO/3 and MNDO evaluation of bond orders and valence indices in uracil and 2-thiouracil. Singh K, Rai DK, Rai R. Journal of Molecular Structure: THEOCHEM; 235(1-2):15-19.
Date published:
October 1, 1991
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Kamlendra Singh.
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The retinol-binding protein of the expanding pig blastocyst: Molecular cloning and expression in trophectoderm and embryonic disc. Trout WE, McDonnell JJ, Kramer KK, Baumbach GA, Roberts RM. Molecular Endocrinology; 5(10):1533-1540.
Date published:
October 1, 1991
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Molecular cloning and nucleotide sequence analysis of a cDNA encoding pea cytosolic ascorbate peroxidase. Mittler R, Zilinskas BA. FEBS Letters; 289(2):257-259.
Date published:
September 2, 1991
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Ron Mittler.
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Uteroferrin contains complex and high mannose-type oligosaccharides when synthesized in vitro. Baumbach GA, Saunders PTK, Ketcham CM, Bazer FW, Roberts RM. Molecular and Cellular Biochemistry; 105(2):107-117.
Date published:
September 1, 1991
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Transfer RNA₄ˡʸˢ and cell cycle progression: Characterization of Ts-694 cells. Turchi JJ, Weisman GA, Ortweth BJ. Experimental Cell Research; 195(2):536-540.
Date published:
August 1, 1991
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Gary Weisman.
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A lipopolysaccharide mutant of Bradyrhizobium japonicum that uncouples plant from bacterial differentiation. Stacey G, So JS, Roth LE, Lakshmi SK B, Carlson RW. Molecular plant-microbe interactions : MPMI; 4(4):332-340.
Date published:
July 1, 1991
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Gary Stacey.
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Quantitative immunogold ultracryomicrotome stidies of the distribution of periimplantation proteins in the sheep. Wooding FBP, Morgan G, Roberts RM. Cell and Tissue Research; 265(1):83-93.
Date published:
July 1, 1991
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MINDO/3 and MNDO studies of some thio analogues of nucleic acid bases. Singh K, Rai DK, Yadav JS. Journal of Molecular Structure: THEOCHEM; 231(C):103-107.
Date published:
June 20, 1991
Featured in this article:
Kamlendra Singh.
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DNA fingerprinting and the characterisation of cell lines. Stacey G. Cytotechnology; 6(2):91-92.
Date published:
June 1, 1991
Featured in this article:
Gary Stacey.
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Induction of Trophoblastic Interferon Expression in Ovine Blastocysts after Treatment with Double-Stranded RNA. Farin CE, Cross JC, Tindle NA, Murphy CN, Farin PW, Roberts RM. Journal of Interferon Research; 11(3):151-157.
Date published:
June 1, 1991
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A role for interferons in early pregnancy. Roberts RM. BioEssays; 13(3):121-126.
Date published:
March 1, 1991
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8th International Congress on Nitrogen Fixation. Gresshoff PM, Roth LE, Stacey G. Plant Molecular Biology Reporter; 9(1):39-44.
Date published:
February 1, 1991
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Gary Stacey.
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Molecular mechanisms of transformation by the v-rel oncogene. Hannink M, Temin HM. Critical reviews in oncogenesis; 2(4):293-309.
Date published:
January 1, 1991
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Oxidative stress responses and shock proteins in the unicellular cyanobacterium Synechococcus R2 (PCC-7942). Mittler R, Tel-Or E. Archives of Microbiology; 155(2):125-130.
Date published:
January 1, 1991
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Oxidative stress responses in the unicellular cyanobacterium synechococcus pcc 7942. Mittler R, Tel-or E. Free Radical Research; 13(1):845-850.
Date published:
January 1, 1991
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Ron Mittler.
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Vibrational studies of biomolecules-III. 6-Thioguanine. Singh K, Yadav RA, Yadav JS. Spectrochimica Acta Part A: Molecular Spectroscopy; 47(6):819-820.
Date published:
January 1, 1991
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Calcium-dependent phosphorylation of symbiosome membrane proteins from nitrogen-fixing soybean nodules: Evidence for phosphorylation of nodulin-26. Weaver CD, Crombie B, Stacey G, Roberts DM. Plant Physiology; 95(1):222-227.
Date published:
January 1, 1991
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Chemotaxis of Bradyrhizobium japonicum to soybean exudates. Barbour WM, Hattermann DR, Stacey G. Applied and Environmental Microbiology; 57(9):2635-2639.
Date published:
January 1, 1991
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Studies of the Bradyrhizobium japonicum nodD₁ promoter: A repeated structure for the nod box. Wang S-P, Stacey G. Journal of Bacteriology; 173(11):3356-3365.
Date published:
January 1, 1991
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Chemical control of interstrain competition for soybean nodulation by Bradyrhizobium japonicum. Cunningham S, Kollmeyer WD, Stacey G. Applied and Environmental Microbiology; 57(7):1886-1892.
Date published:
January 1, 1991
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The quality control of cell banks using DNA fingerprinting. Stacey GN, Bolton BJ, Doyle A. EXS; 58:361-370.
Date published:
January 1, 1991
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Gary Stacey.
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The Bradyrhizobium japonicum nolA gene and its involvement in the genotype-specific nodulation of soybeans. Sadowsky MJ, Cregan PB, Gottfert M, Sharma A, Gerhold D, Rodriguez-Quinones F, Keyser HH, Hennecke H, Stacey G. Proceedings of the National Academy of Sciences of the United States of America; 88(2):637-641.
Date published:
January 1, 1991
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Constitutive and trophoblast-specific expression of a class of bovine interferon genes. Cross JC, Roberts RM. Proceedings of the National Academy of Sciences of the United States of America; 88(9):3817-3821.
Date published:
January 1, 1991
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Slowed transcription and rapid messenger RNA turnover contribute to a decline in synthesis of ovine trophoblast protein-1 during in vitro culture. Hansen TR, Cross JC, Farin CE, Imakawa K, Roberts RM. Biology of Reproduction; 45(1):94-100.
Date published:
January 1, 1991
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Identification of the major pregnancy-specific antigens of cattle and sheep as inactive members of the aspartic proteinase family. Xie S, Low BG, Nagel RJ, Kramer KK, Anthony RV, Zoli AP, Beckers J-F, Roberts RM. Proceedings of the National Academy of Sciences of the United States of America; 88(22):10247-10251.
Date published:
January 1, 1991
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Unique features of the trophoblast interferons. Roberts RM, Cross JC, Leaman DW. Pharmacology and Therapeutics; 51(3):329-345.
Date published:
January 1, 1991
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The polypeptides and genes for ovine and bovine trophoblast protein-1. Roberts RM, Klemann SW, Leaman DW, Bixby JA, Cross JC, Farin CE, Imakawa K, Hansen TR. Journal of reproduction and fertility. Supplement; 43:3-12.
Date published:
January 1, 1991
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Effect of injected bovine interferon-α(I)1 on oestrous cycle length and pregnancy success in sheep. Schalue-Francis TK, Farin PW, Cross JC, Keisler D, Roberts RM. Journal of Reproduction and Fertility; 91(1):347-356.
Date published:
January 1, 1991
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The genes for the trophoblast interferons and the related interferon-α(II) possess distinct 5′-promoter and 3′-flanking sequences. Hansen TR, Leaman DW, Cross JC, Mathialagan N, Bixby JA, Roberts RM. Journal of Biological Chemistry; 266(5):3060-3067.
Date published:
January 1, 1991
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Induction of the synthesis of the pregnancy-specific protein p70 in the endometrium by intramuscular injection of recombinant bovine interferon-α11 in nonpregnant ewes. Francis H, Keisler DH, Roberts RM. Journal of Reproduction and Fertility; 93(2):367-374.
Date published:
January 1, 1991
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1990
Sequence variability among ovine trophoblast interferon cDNA. Klemann SW, Imakawa K, Roberts RM. Nucleic Acids Research; 18(22):6724.
Date published:
November 25, 1990
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The v-rel oncogene encodes a κB enhancer binding protein that inhibits NF-κB function. Ballard DW, Walker WH, Doerre S, Sista P, Molitor JA, Dixon EP, Peffer NJ, Hannink M, Greene WC. Cell; 63(4):803-814.
Date published:
November 16, 1990
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The Production, Purification, and Bioactivity of Recombinant Bovine Trophoblast Protein-1 (Bovine Trophoblast Interferon). Klemann SW, Li J, Imakawa K, Cross JC, Francis H, Roberts RM. Molecular Endocrinology; 4(10):1506-1514.
Date published:
October 1, 1990
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Ammonia regulation of nod genes in Bradyrhizobium japonicum. Wang S-P, Stacey G. MGG Molecular & General Genetics; 223(2):329-331.
Date published:
September 1, 1990
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Effects of intramuscular administration of recombinant bovine interferon-alpha I1 during the period of maternal recognition of pregnancy. Nephew KP, McClure KE, Day ML, Xie S, Roberts RM, Pope WF. Journal of Animal Science; 68(9):2766-2770.
Date published:
September 1, 1990
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Synthesis and secretion of ovine placental lactogen and its biochemical properties. Warren WC, Keisler DH, Anthony RV. Domestic Animal Endocrinology; 7(3):331-342.
Date published:
July 1, 1990
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Wes Warren.
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Purification and structural characterization of ovine placental lactogen. Warren WC, Liang R, Krivi GG, Siegel NR, Anthony RV. The Journal of Endocrinology; 126(1):141-149.
Date published:
July 1, 1990
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Wes Warren.
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Rapid endocytosis and recycling of wheat germ agglutinin binding sites on CHO cells: Evidence for two compartments in a nondegradative pathway. Raub TJ, Koroly MJ, Roberts RM. Journal of Cellular Physiology; 144(1):52-61.
Date published:
July 1, 1990
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Antiperoxidative enzymes in retama and their seasonal variation. Mittler R, Nir M, Tel-Or E. Free Radical Research; 14(1):17-24.
Date published:
June 10, 1990
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Ron Mittler.
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Characterization of the antiviral activity constitutively produced by murine conceptuses: Absence of placental mrnas for interferon alpha and beta. Cross JC, Farin CE, Sharif SF, Roberts RM. Molecular Reproduction and Development; 26(2):122-128.
Date published:
June 1, 1990
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An RNA holliday junction? Structural and dynamic considerations of the bacteriophage T4 gene 60 interruption. Burke-Agüero DH, Hearst JE. Journal of Molecular Biology; 213(2):199-201.
Date published:
May 20, 1990
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Donald Burke-Agüero.
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Endocytosis of wheat germ agglutinin binding sites from the cell surface into a tubular endosomal network. Raub TJ, Koroly MJ, Roberts RM. Journal of Cellular Physiology; 143(1):1-12.
Date published:
April 1, 1990
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Molecular cloning of the uteroferrin-associated protein, a major progesterone-induced serpin secreted by the porcine uterus, and the expression of its mRNA during pregnancy. Malathy P-V, Lmakawat K, Simmen RCM, Roberts RM. Molecular Endocrinology; 4(3):428-440.
Date published:
March 1, 1990
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Structure and autoregulation of the c-rel promoter. Hannink M, Temin HM. Oncogene; 5(12):1843-1850.
Date published:
January 1, 1990
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Efficient DNA transformation of Bradyrhizobium japonicum by electroporation. Hattermann DR, Stacey G. Applied and Environmental Microbiology; 56(4):833-836.
Date published:
January 1, 1990
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Gary Stacey.
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Covalent incorporation of 3′-O-(4-benzoyl)benzoyl-ATP into a P₂ purinoceptor in transformed mouse fibroblasts. Erb L, Lustig KD, Ahmed AH, Gonzalez FA, Weisman GA. Journal of Biological Chemistry; 265(13):7424-7431.
Date published:
January 1, 1990
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Gary Weisman.
Interferons at the placental interface. Roberts RM, Cross JC, Farin CE, Hansen TR, Klemann SW, Imakawa K. Journal of reproduction and fertility. Supplement; 41:63-74.
Date published:
January 1, 1990
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Two-dimensional polyacrylamide gel electrophoresis of proteins synthesized and released by conceptuses and endometria from pony mares. McDowell KJ, Sharp DC, Fazleabas A, Roberts RM. Journal of Reproduction and Fertility; 89(1):107-115.
Date published:
January 1, 1990
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Differential expression of TRAP isoenzyme in b-CLL cells treated with different inducers. Gignac SM, Buschle M, Roberts RM, Pettit GR, Hoffbrand AV, Drexler HG. Leukemia and Lymphoma; 3(1):19-29.
Date published:
January 1, 1990
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Maternal recognition of pregnancy and embryonic loss. Roberts RM, Schalue-Francis T. Theriogenology; 33(1):175-183.
Date published:
January 1, 1990
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A novel family of progesterone-induced, retinol-binding proteins from uterine secretions of the pig. Clawitter J, Trout WE, Burke MG, Araghi S, Roberts RM. Journal of Biological Chemistry; 265(6):3248-3255.
Date published:
January 1, 1990
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A progesterone-modulated, low-molecular-weight protein from the uterus of the sheep is associated with crystalline inclusion bodies in uterine epithelium and embryonic trophectoderm. Kazemi M, Amann JF, Keisler DH, Ing NH, Roberts RM, Morgan G, Wooding FBP. Biology of Reproduction; 43(1):80-96.
Date published:
January 1, 1990
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Transfer of iron from uteroferrin (purple acid phosphatase) to transferrin related to acid phosphatase activity. Nuttleman PR, Roberts RM. Journal of Biological Chemistry; 265(21):12192-12199.
Date published:
January 1, 1990
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Expression of trophoblastic interferon genes in sheep and cattle. Farin CE, Imakawa K, Hansen TR, McDonnell JJ, Murphy CN, Farin PW, Roberts RM. Biology of Reproduction; 43(2):210-218.
Date published:
January 1, 1990
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Trophoblast proteins and maternal recognition of pregnancy. Roberts RM, Farin CE, Cross JC. Oxford reviews of reproductive biology; 12:147-180.
Date published:
January 1, 1990
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1989
Transactivation of gene expression by nuclear and cytoplasmic rel proteins. Hannink M, Temin HM. Molecular and Cellular Biology; 9(10):4323-4336.
Date published:
October 1, 1989
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cDNA Sequence, Gene Organization, and Progesterone Induction of mRNA for Uteroferrin, a Porcine Uterine Iron Transport Protein. Simmen RCM, Srinivas V, Roberts RM. DNA; 8(8):543-554.
Date published:
October 1, 1989
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Immunogold localization of the NodC and NodA proteins of Rhizobium meliloti. Johnson D, Roth LE, Stacey G. Journal of Bacteriology; 171(9):4583-4588.
Date published:
September 1, 1989
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A Novel Group of Interferons Associated with the Early Ovine and Bovine Embryo. Roberts RM. Journal of Interferon Research; 9(4):373-378.
Date published:
August 1, 1989
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Structure and function of platelet-derived growth factor (PDGF) and related proteins. Hannink M, Donoghue DJ. BBA - Reviews on Cancer; 989(1):1-10.
Date published:
July 28, 1989
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In situ localization of mRNA for the interferon, ovine trophoblast protein-1, during early embryonic development of the sheep. Farin CE, Imakawa K, Roberts RM. Molecular Endocrinology; 3(7):1099-1107.
Date published:
July 1, 1989
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Bacterium release into host cells of nitrogen-fixing soybean nodules: the symbiosome membrane comes from three sources. Roth LE, Stacey G. European Journal of Cell Biology; 49(1):13-23.
Date published:
June 1, 1989
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Gary Stacey.
Cytoplasmic membrane systems involved in bacterium release into soybean nodule cells as studied with two Bradyrhizobium japonicum mutant strains. Roth LE, Stacey G. European Journal of Cell Biology; 49(1):24-32.
Date published:
June 1, 1989
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Identification of Bradyrhizobium nod genes involved in host-specific nodulation. Deshmane N, Stacey G. Journal of Bacteriology; 171(6):3324-3330.
Date published:
June 1, 1989
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Suppression of T‐Lymphocyte Blastogenesis by Ovine Trophoblast Protein‐1 and Human Interferon‐α May Be Independent of Interleukin‐2 Production. Niwano Y, Hansen TR, Kazemi M, Malathy P-V, Johnson HD, Roberts RM, Imakawa K. American Journal of Reproductive Immunology; 20(1):21-26.
Date published:
May 1, 1989
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Localization of the human type 5, tartrate-resistant acid phosphatase gene by in situ hybridization. Allen BS, Ketcham CM, Michael Roberts R, Nick HS, Ostrer H. Genomics; 4(4):597-600.
Date published:
May 1, 1989
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Permeabilization of transformed mouse fibroblasts by 3′‐O‐(4‐benzoyl)benzoyl adenosine 5′‐triphosphate and the desensitization of the process. Gonzalez FA, Ahmed AH, Lustig KD, Erb L, Weisman GA. Journal of Cellular Physiology; 139(1):109-115.
Date published:
April 1, 1989
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Gary Weisman.
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Complex Binding of the Embryonic Interferon, Ovine Trophoblast Protein-1, to Endometrial Receptors. Hansen TR, Kazemi M, Keisler DH, Malathy P-V, Imakawa K, Roberts RM. Journal of Interferon Research; 9(2):215-225.
Date published:
April 1, 1989
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Interferon Production by the Preimplantation Sheep Embryo. Roberts RM, Imakawa K, Niwano Y, Kazemi M, Malathy P-V, Hansen TR, Glass AA, Kronenberg LH. Journal of Interferon Research; 9(2):175-187.
Date published:
April 1, 1989
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Use of a promoter-specific probe to identify two loci from the Rhizobium meliloti nodulation regulon. Gerhold D, Stacey G, Kondorosi A. Plant Molecular Biology; 12(2):181-188.
Date published:
February 1, 1989
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Gary Stacey.
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Purification and characterization of human bone tartrate‐resistant acid phosphatase. Allen SH, Nuttleman PR, Ketcham CM, Roberts RM. Journal of Bone and Minderal Research; 4(1):47-55.
Date published:
February 1, 1989
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Lipid A with 2,3-diamino-2,3-dideoxy-glucose in lipopolysaccharides from slow-growing members of Rhizobiaceae and from “Pseudomonas carboxydovorans”. Mayer H, Krauss JH, Urbanik-Sypniewska T, Puvanesarajah V, Stacey G, Auling G. Archives of Microbiology; 151(2):111-116.
Date published:
January 1, 1989
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Gary Stacey.
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Permeabilizing mammalian cells to macromolecules. Weisman GA, Lustig KD, Friedberg I, Heppel LA. Methods in Enzymology; 171(C):857-869.
Date published:
January 1, 1989
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Gary Weisman.
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Ionic dependence of the extracellular ATP‐induced permeabilization of transformed mouse fibroblasts: Role of plasma membrane activities that regulate cell volume. Weisman GA, De BK, Pritchard RS. Journal of Cellular Physiology; 138(2):375-383.
Date published:
January 1, 1989
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Conceptus inferteons and maternal recognition of pregnancy. Roberts RM. Biology of Reproduction; 40(3):449-452.
Date published:
January 1, 1989
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Structural relationship, biosynthesis, and immunocytochemical localization of uteroferrin-associated basic glycoproteins. Murray MK, Malathy PV, Bazer FW, Roberts RM. Journal of Biological Chemistry; 264(7):4143-4150.
Date published:
January 1, 1989
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Interferons and maternal recognition of pregnancy. Imakawa K, Roberts RM. Progress in clinical and biological research; 294:347-358.
Date published:
January 1, 1989
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Molecular cloning and characterization of complementary deoxyribonucleic acids corresponding to bovine trophoblast protein-1: A comparison with ovine trophoblast protein-1 and bovine lnterferon-αII. Imakawa K, Hansen TR, Malathy P-V, Anthony RV, Polites HG, Marotti KR, Roberts RM. Molecular Endocrinology; 3(1):127-139.
Date published:
January 1, 1989
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Correlation between the release of ovine trophoblast protein-1 by the conceptus and the production of polypeptides by the maternal endometrium of ewes. Sharif SF, Francis H, Keisler DH, Roberts RM. Journal of Reproduction and Fertility; 85(2):471-476.
Date published:
January 1, 1989
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Molecular cloning of the type 5, iron-containing, tartrate-resistant acid phosphatase from human placenta. Ketcham CM, Roberts RM, Simmen RCM, Nick HS. Journal of Biological Chemistry; 264(1):557-563.
Date published:
January 1, 1989
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The major progesterone-modulated proteins secreted into the sheep uterus are members of the serpin superfamily of serine protease inhibitors. Ing NH, Roberts RM. Journal of Biological Chemistry; 264(6):3372-3379.
Date published:
January 1, 1989
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Progesterone induction of the uterine milk proteins: Major secretory proteins of sheep endometrium. Ing NH, Francis H, McDonnell JJ, Amann JF, Roberts RM. Biology of Reproduction; 41(4):643-654.
Date published:
January 1, 1989
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1988
Regulation of nod gene expression in Bradyrhizobium japonicum. Banfalvi Z, Nieuwkoop A, Schell M, Besl L, Stacey G. MGG Molecular & General Genetics; 214(3):420-424.
Date published:
November 1, 1988
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Ovine trophoblast protein-1 and bovine trophoblast protein-1 are present as specific components of uterine flushings of pregnant ewes and cows. Kazemi M, Malathy PV, Keisler DH, Roberts RM. Biology of Reproduction; 39(2):457-463.
Date published:
September 1, 1988
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Synthesis and processing of ovine trophoblast protein-1 and bovine trophoblast protein-1, conceptus secretory proteins involved in the maternal recognition of pregnancy. Anthony RV, Helmer SD, Sharif SF, Roberts RM, Hansen PJ, Thatcher WW, Bazer FW. Endocrinology; 123(3):1274-1280.
Date published:
September 1, 1988
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Autocrine stimulation by the v-sis gene product requires a ligand-receptor interaction at the cell surface. Hannink M, Donoghue DJ. Journal of Cell Biology; 107(1):287-298.
Date published:
July 1, 1988
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Conceptus development, uterine response, blood gases and endocrine function of gilts exposed to increased ambient temperature during early pregnancy. Wettemann RP, Bazer FW, Thatcher WW, Caton D, Roberts RM. Theriogenology; 30(1):57-74.
Date published:
July 1, 1988
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The histidine-221 to tyrosine substitution in v-mos abolishes its biological function and its protein kinase activity. Singh B, Wittenberg C, Hannink M, Reed SI, Donoghue DJ, Arlinghaus RB. Virology; 164(1):114-120.
Date published:
May 1, 1988
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Aprotinin inhibits urokinase but not tissue-type plasminogen activator. Lottenberg R, Sjak-Shie N, Fazleabas AT, Roberts RM. Thrombosis Research; 49(6):549-556.
Date published:
March 15, 1988
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Molecular cloning and temporal expression during pregnancy of the messenger ribonucleic acid encoding uteroferrin, a progesterone-induced uterine secretory protein. Simmen RCM, Baumbach GA, Roberts RM. Molecular Endocrinology; 2(3):253-262.
Date published:
March 1, 1988
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Growth inhibition of transformed mouse fibroblasts by adenine nucleotides occurs via generation of extracellular adenosine. Weisman GA, Lustig KD, Lane E, Huang N, Belzer I, Friedberg I. Journal of Biological Chemistry; 263(25):12367-12372.
Date published:
January 1, 1988
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Interferon RNA of embryonic origin is expressed transiently during early pregnancy in the ewe. Hansen TR, Imakawa K, Polites HG, Marotti KR, Anthony RV, Roberts RM. Journal of Biological Chemistry; 263(26):12801-12804.
Date published:
January 1, 1988
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The functions of uterine secretions. Roberts RM, Bazer FW. Journal of Reproduction and Fertility; 82(2):875-892.
Date published:
January 1, 1988
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1987
The effect of ovine trophoblast protein-one on endometrial protein secretion and cyclic nucleotides. Vallet JL, Bazer FW, Roberts RM. Biology of Reproduction; 37(5):1307-1316.
Date published:
December 1, 1987
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Secretory function of the ovine uterus: effects of gestation and steroid replacement therapy. Moffatt RJ, Bazer FW, Roberts RM, Thatcher WW. Journal of Animal Science; 65(5):1400-1410.
Date published:
November 1, 1987
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Identification of a signal for nuclear targeting in platelet-derived-growth-factor-related molecules. Lee BA, Maher DW, Hannink M, Donoghue DJ. Molecular and Cellular Biology; 7(10):3527-3537.
Date published:
October 1, 1987
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Localizations of aluminum in soybean bacteroids and seeds. Roth LE, Dunlap JR, Stacey G. Applied and Environmental Microbiology; 53(10):2548-2553.
Date published:
October 1, 1987
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Suppression of Lymphocyte Activation by a High‐Molecular‐Weight Glycoprotein Released From Preimplantation Ovine and Porcine Conceptuses. Murray MK, Segerson EC, Hansen PJ, Bazer FW, Roberts RM. American Journal of Reproductive Immunology and Microbiology; 14(2):38-44.
Date published:
June 1, 1987
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Sequence homology in the metalloproteins; Purple acid phosphatase from beef spleen and uteroferrin from porcine uterus. Hunt DF, Yates JR III, Shabanowitz J, Zhu N-Z, Zirino T, Averill BA, Daurat-Larroque ST, Shewale JG, Roberts RM, Brew K. Biochemical and Biophysical Research Communications; 144(3):1154-1160.
Date published:
May 14, 1987
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Transposon-induced symbiotic mutants of Bradyrhizobium japonicum: Isolation of two gene regions essential for nodulation. So J-S, Hodgson LM, Haugland R, Leavitt M, Banfalvi Z, Nieuwkoop AJ, Stacey G. MGG Molecular & General Genetics; 207(1):15-23.
Date published:
April 1, 1987
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Cell surface polysaccharides from Bradyrhizobium japonicum and a nonnodulating mutant. Puvanesarajah V, Schell FM, Gerhold D, Stacey G. Journal of Bacteriology; 169(1):137-141.
Date published:
January 1, 1987
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Common loci for Agrobacterium tumefaciens and Rhizobium meliloti exopolysaccharide synthesis and their roles in plant interactions. Cangelosi GA, Hung L, Puvanesarajah V, Stacey G, Ozga DA, Leigh JA, Nester EW. Journal of Bacteriology; 169(5):2086-2091.
Date published:
January 1, 1987
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A locus encoding host range is linked to the common nodulation genes of Bradyrhizobium japonicum. Nieuwkoop AJ, Banfalvi Z, Deshmane N, Gerhold D, Schell MG, Sirotkin KM, Stacey G. Journal of Bacteriology; 169(6):2631-2638.
Date published:
January 1, 1987
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Identification of bovine trophoblast protein-1, a secretory protein immunologically related to ovine trophoblast protein-1. Helmer SD, Hansen PJ, Anthony RV, Thatcher WW, Bazer FW, Roberts RM. Journal of Reproduction and Fertility; 79(1):83-91.
Date published:
January 1, 1987
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Effects of early pregnancy and acute 17β-estradiol administration on porcine uterine secretion, cyclic nucleotides, and catecholamines. Young KH, Bazer FW, Simpkins JW, Roberts RM. Endocrinology; 120(1):254-263.
Date published:
January 1, 1987
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The role of ovine conceptus secretory proteins in the establishment of pregnancy. Bazer FW, Vallet JL, Ashworth CJ, Anthony RV, Roberts RM. Advances in Experimental Medicine and Biology; 230:221-235.
Date published:
January 1, 1987
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Hormonal control and function of secretory proteins. Roberts RM, Murray MK, Burke MG, Ketcham CM, Bazer FW. Advances in Experimental Medicine and Biology; 230:137-150.
Date published:
January 1, 1987
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Interferon-like sequence of ovine trophoblast protein secreted by embryonic trophectoderm. Imakawa K, Anthony RV, Kazemi M, Marotti KR, Polites HG, Roberts RM. Nature; 330(6146):377-379.
Date published:
January 1, 1987
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Biochemical characterization and biosynthesis of the uterine milk proteins of the pregnant sheep uterus. Hansen PJ, Ing NH, Moffatt RJ, Baumbach GA, Saunders PT, Bazer FW, Roberts RM. Biology of Reproduction; 36(2):405-418.
Date published:
January 1, 1987
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Purification, secretion and immunocytochemical localization of the uterine milk proteins, major progesterone-induced proteins in uterine secretions of the sheep. Moffatt J, Bazer FW, Hansen PJ, Chun PW, Roberts RW. Biology of Reproduction; 36(2):419-430.
Date published:
January 1, 1987
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1986
p37(mos)-Associated serine/threonine protein kinase activity correlates with the cellular transformation function of v-mos. Singh B, Hannink M, Donoghue DJ, Arlinghaus RB. Journal of Virology; 60(3):1148-1152.
Date published:
December 1, 1986
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Cell surface expression of membrane-anchored v-sis gene products: Glycosylation is not required for cell surface transport. Hannink M, Donoghue DJ. Journal of Cell Biology; 103(6):2311-2322.
Date published:
December 1, 1986
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Possible function of carbohydrate on glycoproteins secreted by the pig uterus during pregnancy. Roberts RM, Baumbach GA, Saunders PTK, Raub TJ, Renegar RH, Bazer FW. Molecular and Cellular Biochemistry; 72(1-2):67-79.
Date published:
November 1, 1986
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Deletions in the N-terminal coding region of the v-sis gene: Determination of the minimal transforming region. Sauer MK, Hannink M, Donoghue DJ. Journal of Virology; 59(2):292-300.
Date published:
August 1, 1986
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Cell surface glycoproteins of CHO cells. II. Surface distribution and pathway of internalization. Raub TJ, Roberts RM. Experimental Cell Research; 165(1):92-106.
Date published:
July 1, 1986
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Cell surface glycoproteins of CHO cells. I. Internalization and rapid recycling. Raub TJ, Denny JB, Roberts RM. Experimental Cell Research; 165(1):73-91.
Date published:
July 1, 1986
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Deletions in the C-terminal coding region of the v-sis gene: Dimerization is required for transformation. Hannink M, Sauer MK, Donoghue DJ. Molecular and Cellular Biology; 6(4):1304-1314.
Date published:
April 1, 1986
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Biosynthesis of the v-sis gene product: Signal sequence cleavage, glycosylation, and proteolytic processing. Hannink M, Donoghue DJ. Molecular and Cellular Biology; 6(4):1343-1348.
Date published:
April 1, 1986
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Inhibition of uterine prostaglandin-F2α production by bovine conceptus secretory proteins. Knickerbocker JJ, Thatcher WW, Bazer FW, Barron DH, Roberts RM. Prostaglandins; 31(4):777-793.
Date published:
April 1, 1986
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Role of uteroferrin in placental iron transport in swine: relationship between uteroferrin levels and iron deposition in the conceptus during gestation. Ducsay CA, Buhi WC, Bazer FW, Roberts RM. Journal of Animal Science; 62(3):706-716.
Date published:
March 1, 1986
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Functions of the mos oncogene family and associated gene products. Bold RJ, Hannink M, Donoghue DJ. Cancer Surveys; 5(2):243-255.
Date published:
January 1, 1986
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Signal exchange in plant-microbe interactions. Halverson LJ, Stacey G. Microbiological Reviews; 50(2):193-225.
Date published:
January 1, 1986
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Effect of lectin on nodulation by wild-type Bradyrhizobium japonicum and a nodulation-defective mutant. Halverson LJ, Stacey G. Applied and Environmental Microbiology; 51(4):753-760.
Date published:
January 1, 1986
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Potential for rhizobium improvement. Hodgson ALM, Stacey G, Gibson AH. Critical Reviews in Biotechnology; 4(1):1-74.
Date published:
January 1, 1986
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Interrelationships between uterus and conceptus to maintain corpus luteum function in early pregnancy: sheep, cattle, pigs and horses. Thatcher WW, Bazer FW, Sharp DC, Roberts RM. Journal of Animal Science; 62(Su[[; 2):25-46.
Date published:
January 1, 1986
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Proteins secreted by day-16 to -18 bovine conceptuses extend corpus luteum function in cows. Knickerbocker JJ, Thatcher WW, Bazer FW, Drost M, Barron DH, Fincher KB, Roberts RM. Journal of Reproduction and Fertility; 77(2):381-391.
Date published:
January 1, 1986
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Role of uteroferrin in transplacental iron transport in the pig. Roberts RM, Raub TJ, Bazer FW. Federation Proceedings; 45(10):2513-2518.
Date published:
January 1, 1986
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Role of conceptus secretory products in establishment of pregnancy. Bazer FW, Vallet JL, Roberts RM, Sharp DC, Thatcher WW. Journal of Reproduction and Fertility; 76(2):841-850.
Date published:
January 1, 1986
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Proteins secreted by the sheep conceptus suppress induction of uterine prostaglandin F-2α release by oestradiol and oxytocin. Fincher KB, Bazer FW, Hansen PJ, Thatcher WW, Roberts RM. Journal of Reproduction and Fertility; 76(1):425-433.
Date published:
January 1, 1986
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Isolation and characterization of a high molecular weight stable pink form of uteroferrin from uterine secretions and allantoic fluid of pigs. Baumbach GA, Ketcham CM, Richardson DE, Bazer FW, Roberts RM. Journal of Biological Chemistry; 261(27):12869-12878.
Date published:
January 1, 1986
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Phosphorylation of the oligosaccharide of uteroferrin by UDP-GlcNAc:glycoprotein N-acetylglucosamine-1-phosphotransferases from rat liver, Acanthamoeba castellani, and Dictyostelium discoideum requires α1,2-linked mannose residues. Couso R, Lang L, Roberts RM, Kornfeld S. Journal of Biological Chemistry; 261(14):6326-6331.
Date published:
January 1, 1986
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Residual stress relaxation in cemented carbide composites. Krawitz AD, Roberts R, Faber J. Institute of Physics Conference Series; 75:577-589.
Date published:
January 1, 1986
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1985
Lysine residue 121 in the proposed ATP-binding site of the v-mos protein is required for transformation. Hannink M, Donoghue DJ. Proceedings of the National Academy of Sciences of the United States of America; 82(23):7894-7898.
Date published:
December 1, 1985
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Permeabilization of transformed cells in culture by external ATP. Heppel LA, Weisman GA, Friedberg I. The Journal of Membrane Biology; 86(3):189-196.
Date published:
October 1, 1985
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Permeability change in transformed mouse fibroblasts caused by ionophores, and its relationship to membrane permeabilization by exogenous ATP. Friedberg I, Weisman GA, De BK. The Journal of Membrane Biology; 83(3):251-259.
Date published:
October 1, 1985
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In vitro synthesis and secretion of ovine trophoblast protein-1 during the period of maternal recognition of pregnancy. Bazer FW, Baumbach GA, Hansen PJ, Anthony RV, Roberts RM. Endocrinology; 117(4):1424-1430.
Date published:
October 1, 1985
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Characterization of proteins produced in vitro by periattachment bovine conceptuses. Bartol FF, Roberts RM, Bazer FW, Lewis GS, Godkin JD, Thatcher WW. Biology of Reproduction; 32(3):681-693.
Date published:
April 1, 1985
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Isolation and characterization of the DNA region encoding nodulation functions in Bradyrhizobium japonicum. Russell B, Schell MG, Nelson KK, Halverson LJ, Sirotkin KM, Stacey G. Journal of Bacteriology; 164(3):1301-1308.
Date published:
January 1, 1985
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Gary Stacey.
Role for 2-linked-β-D-glucan in the virulence of Agrobacterium tumefaciens. Puvanesarajah V, Schell FM, Stacey G, Douglas CJ, Nester EW. Journal of Bacteriology; 164(1):102-106.
Date published:
January 1, 1985
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Antagonism of the mitogenic effect of epidermal growth factor (EGF) and insulin in tumor cells by exogenous AMP. Weisman GA, Friedberg I. Federation Proceedings; 44(3):1260.
Date published:
January 1, 1985
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Gary Weisman.
Maternal recognition of pregnancy in relation to the survival of transferred embryos: Endocrine aspects. Thatcher WW, Knickerbocker JJ, Bartol FF, Bazer FW, Roberts RM, Drost M. Theriogenology; 23(1):129-143.
Date published:
January 1, 1985
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Characterization of proteins produced in vitro by bovine endometrial explants. Bartol FF, Roberts RM, Bazer FW, Thatcher WW. Biology of Reproduction; 33(3):745-759.
Date published:
January 1, 1985
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The type 5, acid phosphatase from spleen of humans with hairy cell leukemia. Purification, properties, immunological characterization, and comparison with porcine uteroferrin. Ketcham CM, Baumbach GA, Bazer FW, Roberts RM. Journal of Biological Chemistry; 260(9):5768-5776.
Date published:
January 1, 1985
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Appearance of β-hexosaminidase and other lysosomal-like enzymes in the uterine lumen of gilts, ewes and mares in response to progesterone and oestrogens. Hansen PJ, Bazer FW, Roberts RM. Journal of Reproduction and Fertility; 73(2):411-424.
Date published:
January 1, 1985
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Isolation and characterization of high molecular weight uteroferrin. Baumbach GA, Bazer FW, Ketcham CM, Roberts RM. Federation Proceedings; 44(5):5933.
Date published:
January 1, 1985
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Protein production by cultures established from Day-14-16 sheep and pig conceptuses. Godkin JD, Bazer FW, Roberts RM. Journal of Reproduction and Fertility; 74(2):377-382.
Date published:
January 1, 1985
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The carbohydrate structure of porcine uteroferrin and the role of the high mannose chains in promoting uptake by the reticuloendothelial cells of the fetal liver. Saunders PTK, Renegar RH, Raub TJ, Baumbach GA, Atkinson PH, Bazer FW, Roberts RM. Journal of Biological Chemistry; 260(6):3658-3665.
Date published:
January 1, 1985
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1984
Requirement for a signal sequence in biological expression of the v-sis oncogene. Hannink M, Donoghue DJ. Science; 226(4679):1197-1199.
Date published:
December 7, 1984
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Role of uteroferrin in placental iron transport: effect of maternal iron treatment on fetal iron and uteroferrin content and neonatal hemoglobin. Ducsay CA, Buhi WC, Bazer FW, Roberts RM, Combs GE. Journal of Animal Science; 59(5):1303-1308.
Date published:
November 1, 1984
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The role of calcium ions in the permeability changes produced by external ATP in transformed 3T3 cells. De BK, Weisman GA. BBA - Biomembranes; 775(3):381-388.
Date published:
September 5, 1984
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Uteroferrin: A protein in search of a function. Roberts RM, Bazer FW. BioEssays; 1(1):8-11.
Date published:
July 1, 1984
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Biochemical interactions between blastocyst and endometrium in the large domestic animals. Roberts RM, Bazer FW, Thatcher WW. Journal of Biosciences; 6(2 Supplement):63-74.
Date published:
July 1, 1984
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Rhizobium inoculation of legumes. Stacey G, Upchurch RG. Trends in Biotechnology; 2(3):65-70.
Date published:
May 1, 1984
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Gary Stacey.
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Cellular responses to external ATP which precede an increase in nucleotide permeability in transformed cells. Weisman GA, De BK, Friedberg I, Pritchard RS, Heppel LA. Journal of Cellular Physiology; 119(2):211-219.
Date published:
May 1, 1984
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Presence of an inhibitor of plasminogen activator in uterine fluid of the western spotted skunk during delayed implantation. Fazleabas AT, Mead RA, Rourke AW, Roberts RM. Biology of Reproduction; 30(2):311-322.
Date published:
March 1, 1984
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On the role of protein phosphorylation in the ATP‐dependent permeabilization of transformed cells. Weisman GA Dunn SD, De BK, Kitagawa T, Friedberg I. Journal of Cellular Physiology; 118(2):124-132.
Date published:
February 1, 1984
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Gary Weisman.
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Bacteriophage that can distinguish between wild-type Rhizobium japonicum and a non-nodulating mutant. Stacey G, Pocratsky LA, Puvanesarajah V. Applied and Environmental Microbiology; 48(1):68-72.
Date published:
January 1, 1984
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Effect of calcium, calmodulin and calmodulin antagonists on exogenous ATP-dependent permeabilization of transformed cells. De BK, Weisman GA. Federation Proceedings; 43(3):2844.
Date published:
January 1, 1984
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Gary Weisman.
The effect of endogenous adenine nucleotides on transformed cell growth and membrane permeability. Weisman GA, De BK. Federation Proceedings; 43(3):1374.
Date published:
January 1, 1984
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Gary Weisman.
Uteroferrin has N-asparagine-linked high-mannose-type oligosaccharides that contain mannose 6-phosphate. Baumbach GA, Saunders PTK, Bazer FW, Roberts RM. Proceedings of the National Academy of Sciences of the United States of America; 81(10 I):2985-2989.
Date published:
January 1, 1984
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Topographical distribution and internalization of cell surface glycoproteins in the plasma membrane of Chinese hamster ovary. Raub TJ, Roberts RM. Federation Proceedings; 43(7):3181.
Date published:
January 1, 1984
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Suppression of phytohemagglutinin-stimulated lymphocyte blastogenesis by ovine uterine milk protein. Segerson EC, Moffatt RJ, Bazer FW, Roberts RM. Biology of Reproduction; 30(5):1175-1186.
Date published:
January 1, 1984
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Proteins released by cultured Day 15-16 conceptuses prolong luteal maintenance when introduced into the uterine lumen of cyclic ewes. Godkin JD, Bazer FW, Thatcher WW, Roberts RM. Journal of Reproduction and Fertility; 71(1):57-64.
Date published:
January 1, 1984
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Residual stress relaxation in cemented carbide composites studied using the Argonne intense pulsed neutron source. Krawitz AD, Roberts R, Faber J. Advances in X-Ray Analysis; 27:239-249.
Date published:
January 1, 1984
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Ovine trophoblast protein 1, an early secreted blastocyst protein, binds specifically to uterine endometrium and affects protein synthesis. Godkin JD, Bazer FW, Roberts RM. Endocrinology; 114(1):120-130.
Date published:
January 1, 1984
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Lysosomal enzyme phosphorylation. Recognition of a protein-dependent determinant allows specific phosphorylation of oligosaccharides present on lysosomal enzymes. Lang L, Reitman M, Tang J, Roberts RM, Kornfeld S. Journal of Biological Chemistry; 259(23):14663-14671.
Date published:
January 1, 1984
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Acid phosphatase and leucine aminopeptidase activity in the uterine flushings of non-pregnant and pregnant gilts. Zavy MT, Roberts RM, Bazer FW. Journal of Reproduction and Fertility; 72(2):503-507.
Date published:
January 1, 1984
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1983
Biochemical aspects of conceptus–endometrial interactions. Bazer FW, Roberts RM. Journal of Experimental Zoology; 228(2):373-383.
Date published:
November 1, 1983
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Electron transport to nitrogenase. Purification and characterization of pyruvate:flavodoxin oxidoreductase. The nifJ gene product.. Shah VK, Stacey G, Brill WJ. Journal of Biological Chemistry; 258(19):12064-12068.
Date published:
October 10, 1983
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Gary Stacey.
Relationship between release of plasminogen activator and estrogen by blastocysts and secretion of plasmin inhibitor by uterine endometrium in the pregnant pig. Fazleabas AT, Geisert RD, Bazer FW, Roberts RM. Biology of Reproduction; 29(1):225-238.
Date published:
August 1, 1983
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A function of the allantoic sac in the metabolism of uteroferrin and maternal iron by the fetal pig. Buhi WC, Ducsay CA, Bartol FF, Bazer FW, Roberts RM. Placenta; 4(SPEC. ISS.):455-469.
Date published:
January 1, 1983
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1982
Mutants of Rhizobium japonicum defective in nodulation. Stacey G, Paau AS, Noel KD, Maier RJ, Silver LE, Brill WJ. Archives of Microbiology; 132(3):219-224.
Date published:
September 1, 1982
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Gary Stacey.
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A new immunoreactive probe for the isolation and analysis of plasma membrane polypeptides. Synthesis and properties of isethionyl-3-(N-2,4-dinitrophenyl)-aminopropioimidate. Denny JB, Roberts RM. Journal of Biological Chemistry; 257(5):2460-2468.
Date published:
March 10, 1982
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Iron content and molecular weight of uteroferrin and a comparison of its iron and copper forms. Buhi WC, Gray WJ, Mansfield EA, Chun PW, Ducsay CA, Bazer FW, Roberts RM. Biochimica et Biophysica Acta (BBA)/Protein Structure and Molecular; 701(1):32-38.
Date published:
February 4, 1982
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Intragenic complementation by the nifJ-coded protein of Klebsiella pneumoniae. Stacey G, Zhu J, Shah VK, Shen SC, Brill WJ. Journal of Bacteriology; 150(1):293-297.
Date published:
January 1, 1982
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Gary Stacey.
Rhizobium japonicum mutants defective in symbiotic nitrogen fixation. Noel KD, Stacey G, Tandon SR, Siver LE, Brill WJ. Journal of Bacteriology; 152(1):485-494.
Date published:
January 1, 1982
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Gary Stacey.
Purification and properties of a progesterone-induced plasmin/trypsin inhibitor from uterine secretions of pigs and its immunocytochemical localization in the pregnant uterus. Fazleabas AT, Bazer FW, Roberts RM. Journal of Biological Chemistry; 257(12):6886-6897.
Date published:
January 1, 1982
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Iron transfer between the purple phosphatase uteroferrin and transferrin and its possible role in iron metabolism of the fetal pig. Buhi WC, Ducsay CA, Bazer FW, Roberts RM. Journal of Biological Chemistry; 257(4):1712-1723.
Date published:
January 1, 1982
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Identification of stage-specific and hormonally induced polypeptides in the uterine protein secretions of the mare during the oestrous cycle and pregnancy. Zavy MT, Sharp DC, Bazer FW, Fazleabas A, Sessions F, Roberts RM. Journal of Reproduction and Fertility; 64(1):199-207.
Date published:
January 1, 1982
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Role of uteroferrin in iron transport and macromolecular uptake by allantoic epithelium of the porcine conceptus. Ducsay CA, Buhi WC, Bazer FW, Roberts RM. Biology of Reproduction; 26(4):729-745.
Date published:
January 1, 1982
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Purification and properties of a major, low molecular weight protein released by the trophoblast of sheep blastocysts at Day 13-21. Godkin JD, Bazer FW, Moffatt J, Sessions F, Roberts RM. Journal of Reproduction and Fertility; 65(1):141-150.
Date published:
January 1, 1982
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Establishment of pregnancy in the pig: III. Endometrial secretory response to estradiol valerate administered on day 11 of the estrous cycle. Geisert RD, Thatcher WW, Roberts RM, Bazer FW. Biology of Reproduction; 27(4):957-965.
Date published:
January 1, 1982
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High molecular weight glycoproteins released by expanding, pre-attachment sheep, pig and cow blastocysts in culture. Masters RA, Roberts RM, Lewis GS, Thatcher WW, Bazer FW, Godkin JD. Journal of Reproduction and Fertility; 66(2):571-583.
Date published:
January 1, 1982
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Establishment of pregnancy in the pig: II. Cellular remodeling of the porcine blastocyst during elongation on day 12 of pregnancy. Geisert RD, Brookbank JW, Roberts RM, Bazer FW. Biology of Reproduction; 27(4):941-955.
Date published:
January 1, 1982
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Placental transport and distribution of uteroferrin in the fetal pig. Renegar RH, Bazer FW, Roberts RM. Biology of Reproduction; 27(5):1247-1260.
Date published:
January 1, 1982
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Synthesis and release of polypeptides by pig conceptuses during the period of blastocyst elongation and attachment. Godkin JD, Bazer FW, Lewis GS, Geisert RD, Roberts RM. Biology of Reproduction; 27(4):977-987.
Date published:
January 1, 1982
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Comparison of glucose, fructose, ascorbic acid and glucosephosphate isomerase enzymatic activity in uterine flushings from nonpregnant and pregnant gilts and pony mares. Zavy MT, Clark WR, Sharp DC, Roberts RM, Bazer FW. Biology of Reproduction; 27(5):1147-1158.
Date published:
January 1, 1982
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Establishment of pregnancy in the pig: I. Interrelationships between preimplantation development of the pig blastocyst and uterine endometrial secretions. Geisert RD, Renegar RH, Thatcher WW, Roberts RM, Bazer FW. Biology of Reproduction; 27(4):925-939.
Date published:
January 1, 1982
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Partial characterization of the equine uteroferrin-like protein. McDowell KJ, Sharp DC, Fazleabas A, Roberts RM, Bazer FW. Journal of reproduction and fertility. Supplement; 32:329-334.
Date published:
January 1, 1982
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1981
Effects of the estrous cycle and early pregnancy on bovine uterine, luteal, and follicular responses. Bartol FF, Thatcher WW, Bazer FW, Kimball FA, Chenault JR, Wilcox CJ, Roberts RM. Biology of Reproduction; 25(4):759-776.
Date published:
January 1, 1981
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Progesterone-induced secretion of a retinol-binding protein in the pig uterus. Adams KL, Bazer FW, Roberts RM. Journal of Reproduction and Fertility; 62(1):39-47.
Date published:
January 1, 1981
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Properties of a membrane-associated L-leucine β-naphthylamidase (leucine aminopeptidase) from the porcine uterus. Mancarella DA, Basha SM, Mullins DE, Mansfield E, Bazer FW, Roberts RM. Biology of Reproduction; 24(4):879-887.
Date published:
January 1, 1981
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1980
Alkaline urea solubilization, two-dimensional electrophoresis and lectin staining of mammalian cell plasma membrane and plant seed proteins. Horst MN, Basha SMM, Baumbach GA, Mansfield EH, Roberts RM. Analytical Biochemistry; 102(2):399-408.
Date published:
March 1, 1980
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Progesterone-induced uterine secretions in pigs. Recovery from pseudopregnant and unilaterally pregnant gilts. Basha SM, Bazer FW, Geisert RD, Roberts RM. Journal of Animal Science; 50(1):113-123.
Date published:
January 1, 1980
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Secretion of a progesterone-induced inhibitor of plasminogen activator by the porcine uterus. Mullins DE, Bazer FW, Roberts R. Cell; 20(3):865-872.
Date published:
January 1, 1980
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Isolation and characterization of a plasma membrane fraction derived from the luminal surface of the pig uterus during the estrous cycle and early pregnancy. Mullins DE, Horst MN, Bazer FW, Roberts RM. Biology of Reproduction; 22(5):1181-1192.
Date published:
January 1, 1980
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Effect of the conceptus on quantitative and qualitative aspects of uterine secretion in pigs. Basha SMM, Bazer FW, Roberts RM. Journal of Reproduction and Fertility; 60(1):41-48.
Date published:
January 1, 1980
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The novel g’ = 1.74 EPR spectrum of pink and purple uteroferrin. Antanaitis BC, Aisen P, Lilienthal HR, Roberts RM, Bazer FW. Journal of Biological Chemistry; 255(23):11204-11209.
Date published:
January 1, 1980
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1979
Method for obtaining ovine uterine secretions from unilaterally pregnant ewes. Bazer FW, Roberts RW, Basha SM, Zavy MT, Caton D, Barron DH. Journal of Animal Science; 49(6):1522-1527.
Date published:
December 1, 1979
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Resonance Raman scattering from uteroferrin, the purple glycoprotein of the porcine uterus. Gaber BP, Sheridan JP, Bazer FW, Roberts RM. Journal of Biological Chemistry; 254(17):8340-8342.
Date published:
September 10, 1979
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Active Ca²⁺ transport by vesicles reconstituted from triton X-100-solubilized pigeon erythrocyte membrane. Yeung WK, Weisman G, Vidaver GA. BBA - Biomembranes; 555(2):249-258.
Date published:
August 7, 1979
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The purification of glutamine synthetase from Azotobacter and other procaryotes by blue sepharose chromatography. Lepo JE, Stacey G, Wyss O, Tabita FR. BBA - Enzymology; 568(2):428-436.
Date published:
June 6, 1979
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Nitrogen and ammonia assimilation in the cyanobacteria: Regulation of glutamine synthetase. Stacey G, Van Baalen C, Tabita FR. Archives of Biochemistry and Biophysics; 194(2):457-467.
Date published:
May 1, 1979
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Two-dimensional electrophoretic analysis of concanavalin-A binding components in the plasma membranes of Chinese hamster fibroblasts. Horst MN, Baumbach G, Roberts RM. FEBS Letters; 100(2):385-388.
Date published:
April 15, 1979
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Control of heterocyst and nitrogenase synthesis in cyanobacteria. Stacey G, Bottomley PJ, Van Baalen C, Tabita FR. Journal of Bacteriology; 137(1):321-326.
Date published:
January 1, 1979
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Gary Stacey.
Analysis of polypeptide turnover rates in Chinese hamster ovary cell plasma membranes using two-dimensional electrophoresis. Horst MN, Roberts RM. Journal of Biological Chemistry; 254(12):5000-5007.
Date published:
January 1, 1979
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The secretion of a uterine specific, purple phosphatase by cultured explants of porcine endometrium dependency upon the state of pregnancy of the donor animal. Basha SMM, Bazer FW, Roberts RM. Biology of Reproduction; 20(3):431-441.
Date published:
January 1, 1979
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Actions of hormones on the uterus and effect on conceptus development. Bazer FW, Roberts RM, Thatcher WW. Journal of Animal Science; 49(Suppl 2):35-45.
Date published:
January 1, 1979
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1978
Peptidases from pig reproductive tract: Purification and properties of aminopeptidases from uterine secretions, allantoic fluid, and amniotic fluid. Basha SMM, Horst MN, Bazer FW, Roberts RM. Archives of Biochemistry and Biophysics; 185(1):174-184.
Date published:
January 15, 1978
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1977
A sephadex column procedure for measuring uptake and loss of low molecular weight solutes from small, lipid-rich vesicles. Sorensen EN, Weisman G, Vidaver GA. Analytical Biochemistry; 82(2):376-384.
Date published:
October 1, 1977
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Isolation and characterization of a marine Anabaena sp. capable of rapid growth on molecular nitrogen. Stacey G, Van Baalen C, Tabita FR. Archives of Microbiology; 114(3):197-201.
Date published:
September 1, 1977
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Gary Stacey.
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A simple colorimetric method for the determination of tryptophan. Mahaboob Basha SM, Roberts RM. Analytical Biochemistry; 77(2):378-386.
Date published:
February 1, 1977
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Nitrogen and ammonia assimilation in the cyanobacteria: purification of glutamine synthetase from Anabaena sp. strain CA. Stacey G, Tabita FR, Van Baalen C. Journal of Bacteriology; 132(2):596-603.
Date published:
January 1, 1977
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Gary Stacey.
Characterization of a progesterone-induced aminopeptidase from the uterus and allantoic fluid of pigs. Basha SMM, Horst MN, Bazer FW, Roberts RM. Federation Proceedings; 36(3):2596.
Date published:
January 1, 1977
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1976
Progesterone induction of lysozyme and peptidase activities in the porcine uterus. Roberts RM, Bazer FW, Baldwin N, Pollard WE. Archives of Biochemistry and Biophysics; 177(2):499-507.
Date published:
December 1, 1976
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A correlation between membrane glycopeptide composition and losses in concanavalin a agglutinability induced by db-cAMP in Chinese hamster ovary cells. Van Veen J, Noonan KD, Roberts RM. Experimental Cell Research; 103(2):405-413.
Date published:
December 1, 1976
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Requirement of an essential thiol group and ferric iron for the activity of the progesterone-induced porcine uterine purple phosphatase. Schlosnagle DC, Sander EG, Bazer FW, Roberts RM. Journal of Biological Chemistry; 251(15):4680-4685.
Date published:
August 10, 1976
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Phosphoprotein phosphatase activity of the progesterone-induced purple glycoprotein of the procine uterus. Roberts RM, Bazer FW. Biochemical and Biophysical Research Communications; 68(2):450-455.
Date published:
January 26, 1976
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1975
Radiolabeling of mammalian cells in tissue culture by use of acetic anhydride. Potential value for studying the dynamics of protein turnover in living cells. Roberts RM, Barbara O-Ching Y. Archives of Biochemistry and Biophysics; 171(1):226-233.
Date published:
November 1, 1975
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Turnover of plasma membrane polypeptides in nonproliferating cultures of Chinese hamster ovary cells and human skin fibroblasts. Roberts RM, Barbara O-Ching Y. Archives of Biochemistry and Biophysics; 171(1):234-244.
Date published:
November 1, 1975
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Presence of a progesterone-induced, uterine specific, acid phosphatase in allantoic fluid of gilts. Bazer FW, Chen TT, Knight JW, Schlosnagle D, Baldwin NJ, Roberts RM. Journal of Animal Science; 41(4):1112-1119.
Date published:
October 1, 1975
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Complex saccharide metabolism in cystic fibrosis fibroblasts. Welch DW, Roberts RW. Pediatric Research; 9(9):698-702.
Date published:
September 1, 1975
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Plasma membrane components of skin fibroblasts from normal individuals and patients with cystic fibrosis. Baig MM, Cetorelli JJ, Roberts RM. Journal of Pediatrics; 86(1):72-76.
Date published:
January 1, 1975
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Rapid cell surface changes in Chinese hamster ovary cells associated with morphological responses to dibutyryl cyclic AMP. Van Veen J, Noonan KD, Roberts RM. Federation Proceedings; 34(3):2236.
Date published:
January 1, 1975
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Uterine secretion in mammals: synthesis and placental transport of a purple acid phosphatase in pigs. Chen TT, Bazer FW, Gebhardt BM, Roberts RM. Biology of Reproduction; 13(3):304-313.
Date published:
January 1, 1975
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Radiolabeling of mammalian cells in tissue culture using acetic anhydride: potential value for studying the dynamics of protein turnover in living cells. Roberts RM. Journal of General Physiology; 66(6):18a.
Date published:
January 1, 1975
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Biochemical characteristics of membrane fractions isolated from maize (Zea mays L.) roots. Hall JL, Roberts RM. Annals of Botany; 39(5):983-993.
Date published:
January 1, 1975
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Are glycoproteins and glycosaminoglycans components of the eukaryotic genome?. Stein GS, Roberts RM, Davis JL, Head WJ, Stein JL, Thrall CL, Van Veen J, Welch DW. Nature; 258(5536):639-641.
Date published:
January 1, 1975
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1974
Chemical modification of the plasma membrane polypeptides of cultured mammalian cells as an aid to studying protein turnover. Roberts RM, Yuan BO-C. Biochemistry; 13(23):4846-4855.
Date published:
November 1, 1974
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Properties of a progesterone induced, iron containing glycoprotein with phosphatase activity from the uterine fluids of pigs. Roberts RM, Schlosnagel DC, Bazer FW. Federation Proceedings; 33(5 II):1195.
Date published:
January 1, 1974
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An iron containing phosphatase induced by progesterone in the uterine fluids of pigs. Schlosnagle DC, Bazer FW, Tsibris JCM, Roberts RM. Journal of Biological Chemistry; 249(23):7574-7579.
Date published:
January 1, 1974
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1973
Determination of l-galactose in polysaccharide material. Roberts RM, Harrer E. Phytochemistry; 12(11):2679-2682.
Date published:
November 1, 1973
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Fucose-containing glycopeptides from the cell surface of chinese hamster ovary cells grown in the presence or absence of cyclic amp. Roberts RM, Walker A, Cetorelli JJ. Nature New Biology; 244(133):86-89.
Date published:
July 18, 1973
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Comparative studies on the carbohydrate-containing membrane components of normal and adenosine 3′:5′-cyclic monophosphate-treated Chinese hamster ovary cells. Baig MM, Roberts RM. Biochemical Journal; 134(1):329-339.
Date published:
May 1, 1973
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Purification and properties of a progesterone induced basic glycoprotein from the uterine fluids of pigs. Chen TT, Bazer FW, Cetorelli JJ, Pollard WE, Roberts RM. Journal of Biological Chemistry; 248(24):8560-8566.
Date published:
January 1, 1973
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1971
The formation of glycoproteins in tissues of higher plants. Specific labelling with D-(1- 14 C)glucosamine. Roberts RM, Connor AB, Cetorelli JJ. Biochemical Journal; 125(4):999-1008.
Date published:
December 1, 1971
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The localized incorporation of 3H-L-fucose into cell-wall polysaccharides of the cap and epidermis of corn roots – Autoradiographic and biosynthetic studies. Kirby EG, Roberts RM. Planta; 99(3):211-221.
Date published:
September 1, 1971
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The formation of uridine diphosphate-glucuronic acid in plants. Uridine diphosphate-glucuronic acid pyrophosphorylase from barley seedlings. Roberts RM. Journal of Biological Chemistry; 246(16):4995-5002.
Date published:
August 25, 1971
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The metabolism of d-mannose-14C to polysaccharide in corn roots. Specific labeling of l-galactose, d-mannose, and l-fucose. Roberts RM. Archives of Biochemistry and Biophysics; 145(2):685-692.
Date published:
August 1, 1971
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1970
Incorporation of 14C-l-arabinose into polysaccharides of maize root-tips. Roberts RM, Butt VS. Planta; 94(3):175-183.
Date published:
September 1, 1970
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A critical study of the DEAE paper disc technique used in radiochemical enzyme assays. Roberts RM, Tovey KC. Analytical Biochemistry; 34(2):582-590.
Date published:
April 1, 1970
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The incorporation of D-glucosamine-14C into root tissues of higher plants. Roberts RM. Plant Physiology; 45(3):263-267.
Date published:
March 1, 1970
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An artefact in the chromatography of sugar nucleotides using solvents containing ammonium acetate. Tovey KC, Roberts RM. Journal of Chromatography A; 47(C):287-290.
Date published:
January 1, 1970
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1969
Trehalase activity in Selaginella martensii. Roberts RM, Tovey KC. Archives of Biochemistry and Biophysics; 133(2):408-412.
Date published:
September 1, 1969
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Patterns of incorporation of d-galactose into cell wall polysaccharide of growing maize roots. Roberts RM, Butt VS. Planta; 84(3):250-262.
Date published:
September 1, 1969
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1968
The metabolism of l-fucose by sycamore (Acer pseudoplatanus L.) cell cultures. Roberts RM. Archives of Biochemistry and Biophysics; 128(3):819-820.
Date published:
December 1, 1968
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Patterns of incorporation of pentose and uronic acid into the cell walls of maize root-tips. Roberts RM, Butt VS. Experimental Cell Research; 51(2-3):519-530.
Date published:
July 1, 1968
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1967
Rates of incorporation of label from d-[14C]glucose into different regions of the root-tip of maize (zea mays l.). Roberts RM, Butt VS. New Phytologist; 66(4):563-567.
Date published:
October 1, 1967
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Patterns of cellulose synthesis in maize root-tips. A chemical and autoradiographic study. Roberts RM, Butt VS. Experimental Cell Research; 46(3):495-510.
Date published:
June 1, 1967
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The incorporation of 14C-labelled D-glucuronate and D-galactose into segments of the root-tip of corn. Roberts RM. Phytochemistry; 6(4):525-533.
Date published:
April 1, 1967
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Conversion of myo-inositol-2-14C to labeled 4-O-methyl-glucuronic acid in the cell wall of maize root tips. Roberts RM, Shah R, Loewus F. Archives of Biochemistry and Biophysics; 119(C):590-593.
Date published:
January 1, 1967
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1966
Polysaccharide synthesis and the fine structure of root cells. Juniper BE, Roberts RM. Journal of the Royal Microscopical Society; 85(1):63-72.
Date published:
February 1, 1966
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Global urban environmental change drives adaptation in white clover. Santangelo, James S, Ness, Rob W.; Cohan, Beata; Fitzpatrick, Connor R.; Innes, Simon G.; Koch, Sophie; Miles, Lindsay S. , Munim, Samreen; Peres-Neto, Pedro R., Prashad, Cindy; Tong, Alex T, Aguirre, Windsor E.. Science; Volume 375, Issue 6586, Pages 1275 - 1281.
Date published:
January 1, 1970
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Marc Johnson.
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