Skip to navigation Skip to content

Publications

Ruthie Angelovici
Yobi, Abou, Albert Batushansky, Melvin J. Oliver, and Ruthie Angelovici. “Adaptive Responses of Amino Acid Metabolism to the Combination of Desiccation and Low Nitrogen Availability in Sporobolus Stapfianus.” Planta, 2019. doi:10.1007/s00425-019-03105-6.

Smith, Stacey D., Ruthie Angelovici, Karolina Heyduk, Hiroshi A. Maeda, Gaurav D. Moghe, J. Chris Pires, Joshua R. Widhalm, and Jennifer H. Wisecaver. “The Renaissance of Comparative Biochemistry.” American Journal of Botany, January 1, 2019.

Yobi, Abou, and Ruthie Angelovici. “A High‐Throughput Absolute‐Level Quantification of Protein‐Bound Amino Acids in Seeds.” Current Protocols in Plant Biology, December 2018.

Li, Aixia, Shangang Jia, Abou Yobi, Zhengxiang Ge, Shirley Sato, Chi Zhang, Ruthie Angelovici, Tom E. Clemente, and David R. Holding. “Editing of an Alpha-kafirin Gene Family Increases Digestibility and Protein Quality in Sorghum.” Plant Physiology, 2018. doi:10.1104/pp.18.00200.

Ren, Ying, Abou Yobi, Leandra Marshall, Ruthie Angelovici, Oscar Rodriguez, and David R. Holding. “Generation and Evaluation of Modified Opaque-2 Popcorn Suggests a Route to Quality Protein Popcorn.” Frontiers in Plant Science. 9 (2018). doi:10.3389/fpls.2018.01803.

Li, Mao, Hong An, Ruthie Angelovici, Clement Bagaza, Albert Batushansky, Lynn Clark, Viktoriya Coneva, Michael J. Donoghue, Erika Edwards, Diego Fajardo, Hui Fang, Margaret H. Frank, Timothy Gallaher, Sarah Gebken, Theresa Hill, Shelley Jansky, Baljinder Kaur, Phillip C. Klahs, Laura L. Klein, Vasu Kuraparthy, Jason Londo, Zoë Migicovsky, Allison Miller, Rebekah Mohn, Sean Myles, Wagner C. Otoni, J. C. Pires, Edmond Rieffer, Sam Schmerler, Elizabeth Spriggs, Christopher N. Topp, Allen Van Deynze, Kuang Zhang, Linglong Zhu, Braden M. Zink, and Daniel H. Chitwood. “Topological Data Analysis as a Morphometric Method: Using Persistent Homology to Demarcate a Leaf Morphospace.” Frontiers in Plant Science. 9 (2018). doi:10.3389/fpls.2018.00553.

Bird, Kevin A., Sarah Diane Turner, Timothy M. Beissinger, and Ruthie Angelovici. “Subset-based Genomic Prediction Provides Insights into the Genetic Architecture of Free Amino Acid Levels in Dry Arabidopsis Thaliana seeds.” 2018. doi:10.1101/272047.

Donald H. Burke
Hill, Kyle J., Leonard C. Rogers, Duncan T. Njenda, Donald H. Burke, Stefan G. Sarafianos, Anders Sönnerborg, Ujjwal Neogi, and Kamalendra Singh. “Strain-specific Effect on Biphasic DNA Binding by HIV-1 Integrase.” Aids. 33, no. 3 (2019): 588-92. doi:10.1097/qad.0000000000002078.

Alam, Khalid K., Jonathan L. Chang, Margaret J. Lange, Phuong D.m. Nguyen, Andrew W. Sawyer, and Donald H. Burke. “Poly-Target Selection Identifies Broad-Spectrum RNA Aptamers.” Molecular Therapy – Nucleic Acids. 13 (2018): 605-19. doi:10.1016/j.omtn.2018.10.010.

Lange, Margaret J., Donald H. Burke, and John C. Chaput. “Activation of Innate Immune Responses by a Cytosine-Phosphate-Guanine Oligonucleotide Sequence Composed Entirely of Threose Nucleic Acid.” Nucleic Acid Therapeutics, December 2018.

Smith, Josiah D., Leah N. Cardwell, David Porciani, Julie A. Nguyen, Rui Zhang, Fabio Gallazzi, Rama Rao Tata, Donald H. Burke, Mark A. Daniels, and Bret D. Ulery. “Aptamer-displaying Peptide Amphiphile Micelles as a Cell-targeted Delivery Vehicle of Peptide Cargoes.” Physical Biology. 15, no. 6 (2018): 065006. doi:10.1088/1478-3975/aadb68.

Porciani, David, Leah N. Cardwell, Kwaku D. Tawiah, Khalid K. Alam, Margaret J. Lange, Mark A. Daniels, and Donald H. Burke. “Modular Cell-internalizing Aptamer Nanostructure Enables Targeted Delivery of Large Functional RNAs in Cancer Cell Lines.” Nature Communications. 9, no. 1 (2018). doi:10.1038/s41467-018-04691-x.

Lange, Margaret J., Donald H. Burke-Aguero, and John Chaput. “Activation of Innate Immune Responses by a CpG Oligonucleotide Sequence Composed Entirely of Threose Nucleic Acid.” 2018. doi:10.1101/401612.

Anand Chandrasekhar
Ferguson, Ross, Daniel E. Holloway, Anand Chandrasekhar, K. Ravi Acharya, and Vasanta Subramanian. “The Catalytic Activity and Secretion of Zebrafish RNases Are Essential for Their in Vivo Function in Motor Neurons and Vasculature.” Scientific Reports. 9, no. 1 (2019). doi:10.1038/s41598-018-37140-2.

Zochodne, Douglas William, Arul Duraikannu, Anand Krishnan, and Ambika Chandrasekhar. “BEYOND TROPHIC FACTORS: EXPLOITING THE INTRINSIC REGENERATIVE PROPERTIES OF ADULT NEURONS.” Frontiers in Cellular Neuroscience. 12 (2019).

Duraikannu, Arul, Jose A. Martinez, Ambika Chandrasekhar, and Douglas W. Zochodne. “Expression and Manipulation of the APC-β-Catenin Pathway During Peripheral Neuron Regeneration.” Scientific Reports. 8, no. 1 (2018). doi:10.1038/s41598-018-31167-1.

Chandrasekhar, Anand, Keerthana Natarajan, Mohammad Yavarimanesh, and Ramakrishna Mukkamala. “An IPhone Application for Blood Pressure Monitoring via the Oscillometric Finger Pressing Method.” Scientific Reports. 8, no. 1 (2018). doi:10.1038/s41598-018-31632-x.

Gurung, Suman, Emilia Asante, Devynn Hummel, Ashley Williams, Oren Feldman-Schultz, Mary C. Halloran, Vinoth Sittaramane, and Anand Chandrasekhar. “Distinct Roles for the Cell Adhesion Molecule Contactin2 in the Development and Function of Neural Circuits in Zebrafish.” Mechanisms of Development. 152 (2018): 1-12. doi:10.1016/j.mod.2018.05.005.

Krishnan, Anand, Kaylynn Purdy, Ambika Chandrasekhar, Jose Martinez, Chu Cheng, and Douglas W. Zochodne. “A BRCA1-Dependent DNA Damage Response in the Regenerating Adult Peripheral Nerve Milieu.” Molecular Neurobiology, 2017. doi:10.1007/s12035-017-0574-7.

Kassim, Yasmin M., Noorm. Al-Shakarji, Emilia Asante, Anand Chandrasekhar, and K. Palaniappan. “Dissecting Branchiomotor Neuron Circuits in Zebrafish — toward High-throughput Automated Analysis of Jaw Movements.” 2018 IEEE 15th International Symposium on Biomedical Imaging (ISBI 2018), 2018. doi:10.1109/isbi.2018.8363726.

Chandrasekhar, Anand, Chang-Sei Kim, Mohammed Naji, Keerthana Natarajan, Jin-Oh Hahn, and Ramakrishna Mukkamala. “Smartphone-based Blood Pressure Monitoring via the Oscillometric Finger-pressing Method.” Science Translational Medicine, March 7, 2018. doi:10.3410/f.732805891.793543562.

Woo, V., C. Cheng, A. Duraikannu, A. Chandrasekhar, K. Purdy, J.a. Martinez, and D.w. Zochodne. “Caspase-6 Is a Dispensable Enabler of Adult Mammalian Axonal Degeneration.” Neuroscience. 371 (2018): 242-53. doi:10.1016/j.neuroscience.2017.11.052.
Melaragno, and Alexandre Reymond. “Inactivation of AMMECR1 Is Associated with Growth, Bone, and Heart Alterations.” Human Mutation, February 2018.

D Cornelison
Fernando, Charmain A., Aaron M. Pangan, Ddw Cornelison, and Steven S. Segal. “Recovery of Blood Flow Regulation in Microvascular Resistance Networks during Regeneration of Mouse Gluteus Maximus Muscle.” The Journal of Physiology. 597, no. 5 (2019): 1401-417. doi:10.1113/jp277247.

Cornelison, Ddw. ““Known Unknowns”: Current Questions in Muscle Satellite Cell Biology.” Current Topics in Developmental Biology Myogenesis in Development and Disease, 2018, 205-33. doi:10.1016/bs.ctdb.2017.08.006.

Walter Gassmann
Pike, Sharon, Michaela S. Matthes, Paula Mcsteen, and Walter Gassmann. “Using Xenopus Laevis Oocytes to Functionally Characterize Plant Transporters.” Current Protocols in Plant Biology. 4, no. 1 (2019). doi:10.1002/cppb.20087.

Sanz, Amparo, Sharon Pike, Mather A. Khan, Àngela Carrió-Seguí, David G. Mendoza-Cózatl, Lola Peñarrubia, and Walter Gassmann. “Copper Uptake Mechanism of Arabidopsis Thaliana High-affinity COPT Transporters.” Protoplasma. 256, no. 1 (2018): 161-70. doi:10.1007/s00709-018-1286-1.

Spears, Benjamin Joseph, T.c. Howton, Fei Gao, Christopher M. Garner, Shahid Muhktar, and Walter Gassmann. “Direct Regulation of the EFR-dependent Immune Response by Arabidopsis TCP Transcription Factors.” Molecular Plant-Microbe Interactions, 2018. doi:10.1094/mpmi-07-18-0201-fi.

Rampuria, Sakshi, Pushan Bag, Conner J. Rogan, Akanksha Sharma, Walter Gassmann, and P.b. Kirti. “Pathogen-induced AdDjSKI of the Wild Peanut, Arachis Diogoi, Potentiates Tolerance of Multiple Stresses in E. Coli and Tobacco.” Plant Science. 272 (2018): 62-74. doi:10.1016/j.plantsci.2018.03.033.

Halane, Morgan K., Sang Hee Kim, Benjamin J. Spears, Christopher M. Garner, Conner J. Rogan, Elizabeth C. Okafor, Jianbin Su, Saikat Bhattacharjee, and Walter Gassmann. “The Bacterial Type III-secreted Protein AvrRps4 Is a Bipartite Effector.” PLOS Pathogens. 14, no. 3 (2018). doi:10.1371/journal.ppat.1006984.

Su, Jianbin, Benjamin J. Spears, Sang Hee Kim, and Walter Gassmann. “Constant Vigilance: Plant Functions Guarded by Resistance Proteins.” The Plant Journal. 93, no. 4 (2018): 637-50. doi:10.1111/tpj.13798.

Li, Min, Huan Chen, Jian Chen, Ming Chang, Ian A. Palmer, Walter Gassmann, Fengquan Liu, and Zheng Qing Fu. “TCP Transcription Factors Interact With NPR1 and Contribute Redundantly to Systemic Acquired Resistance.” Frontiers in Plant Science. 9 (2018). doi:10.3389/fpls.2018.01153.

Mark Hannink
Sun, Grace Y., Agnes Simonyi, Kevin L. Fritsche, Dennis Y. Chuang, Mark Hannink, Zezong Gu, C. Michael Greenlief, Jeffrey K. Yao, James C. Lee, and David Q. Beversdorf. “Docosahexaenoic Acid (DHA): An Essential Nutrient and a Nutraceutical for Brain Health and Diseases.” Prostaglandins, Leukotrienes and Essential Fatty Acids. 136 (2018): 3-13. doi:10.1016/j.plefa.2017.03.006.

Tipton, Peter, Tong Su, and Mark Hannink. “Assembly of PGAM5 into Multimeric Complexes Provides a Mechanism for Allosteric Regulation of Phosphatase Activity.” Methods in Enzymology Phosphatases, 2018, 353-72. doi:10.1016/bs.mie.2018.05.017.

Marc Johnson
Xu, Chaoyi, Robert A. Dick, Marc C. Johnson, Volker M. Vogt, and Juan R. Perilla. “Energetics of Nucleotides Translocation through HIV-1 CA Hexamer.” Biophysical Journal. 116, no. 3 (2019). doi:10.1016/j.bpj.2018.11.2587.

Dick, Robert A., Kaneil K. Zadrozny, Chaoyi Xu, Florian K. M. Schur, Terri D. Lyddon, Clifton L. Ricana, Jonathan M. Wagner, Juan R. Perilla, Barbie K. Ganser-Pornillos, Marc C. Johnson, Owen Pornillos, and Volker M. Vogt. “Author Correction: Inositol Phosphates Are Assembly Co-factors for HIV-1.” Nature563, no. 7731 (2018). doi:10.1038/s41586-018-0505-4.
Song, Yul, Daniel Cyburt, Tiffany Lucas, Devon Gregory, Terri Lyddon, and Marc Johnson. “βTrCP Is Required for HIV-1 Vpu Modulation of CD4, GaLV Env, and BST-2/Tetherin.” Viruses. 10, no. 10 (2018): 573. doi:10.3390/v10100573.

Dick, Robert A., Kaneil K. Zadrozny, Chaoyi Xu, Florian K. M. Schur, Terri D. Lyddon, Clifton L. Ricana, Jonathan M. Wagner, Juan R. Perilla, Barbie K. Ganser-Pornillos, Marc C. Johnson, Owen Pornillos, and Volker M. Vogt. “Inositol Phosphates Are Assembly Co-factors for HIV-1.” Nature. 560, no. 7719 (2018): 509-12. doi:10.1038/s41586-018-0396-4.

Dick, Robert A., Kaneil K. Zadrozny, Chaoyi Xu, Florian K. M. Schur, Terri D. Lyddon, Clifton L. Ricana, Jonathan M. Wagner, Juan R. Perilla, Barbie K. Ganser-Pornillos, Marc C. Johnson, Owen Pornillos, and Volker M. Vogt. “Author Correction: Inositol Phosphates Are Assembly Co-factors for HIV-1.” Nature. 563, no. 7731 (2018). doi:10.1038/s41586-018-0505-4.

Mannie Liscum
Stone, Bethany B., and Emmanuel Liscum. “Photoreceptors and Associated Signaling III: Phototropins.” Encyclopedia of Plant and Crop Science, 2019, 889-92. doi:10.1081/e-epcs-120012962.

Morrow, Johanna, Kyle T. Willenburg, and Emmanuel Liscum. “Phototropism in Land Plants: Molecules and Mechanism from Light Perception to Response.” Frontiers in Biology. 13, no. 5 (2018): 342-57. doi:10.1007/s11515-018-1518-y.

Christian Lorson
Osman, E. Y., A. Rietz, R. A. Kline, J. J. Cherry, K. J. Hodgetts, C. L. Lorson, and E. J. Androphy. “Intraperitoneal Delivery of a Novel Drug‐like Compound Improves Disease Severity in Severe and Intermediate Mouse Models of Spinal Muscular Atrophy.” Scientific Reports. 9, no. 1 (2019). doi:10.1038/s41598-018-38208-9.

Shababi, Monir, Eric Villalón, Kevin A. Kaifer, Vince Demarco, and Christian L. Lorson. “A Direct Comparison of IV and ICV Delivery Methods for Gene Replacement Therapy in a Mouse Model of SMARD1.” Molecular Therapy – Methods & Clinical Development. 10 (2018): 348-60. doi:10.1016/j.omtm.2018.08.005.

Gray, Kelsey M., Kevin A. Kaifer, David Baillat, Ying Wen, Thomas R. Bonacci, Allison D. Ebert, Amanda C. Raimer, Ashlyn M. Spring, Sara Ten Have, Jacqueline J. Glascock, Kushol Gupta, Gregory D. Van Duyne, Michael J. Emanuele, Angus I. Lamond, Eric J. Wagner, Christian L. Lorson, and A. Gregory Matera. “Self-oligomerization Regulates Stability of Survival Motor Neuron Protein Isoforms by Sequestering an SCFSlmb Degron.” Molecular Biology of the Cell. 29, no. 2 (2018): 96-110. doi:10.1091/mbc.e17-11-0627.

Paula McSteen
Pike, Sharon, Michaela S. Matthes, Paula Mcsteen, and Walter Gassmann. “Using Xenopus Laevis Oocytes to Functionally Characterize Plant Transporters.” Current Protocols in Plant Biology. 4, no. 1 (2019). doi:10.1002/cppb.20087.

Yao, Hong, Andrea Skirpan, Brian Wardell, Michaela S. Matthes, Norman B. Best, Tyler Mccubbin, Amanda Durbak, Taylor Smith, Simon Malcomber, and Paula Mcsteen. “The Barren Stalk2 Gene Is Required for Axillary Meristem Development in Maize.” Molecular Plant. 12, no. 3 (2019): 374-89. doi:10.1016/j.molp.2018.12.024.

Matthes, Michaela Sylvia, Norman Bradley Best, Janlo M. Robil, Simon Malcomber, Andrea Gallavotti, and Paula Mcsteen. “Auxin EvoDevo: Conservation and Diversification of Genes Regulating Auxin Biosynthesis, Transport, and Signaling.” Molecular Plant. 12, no. 3 (2019): 298-320. doi:10.1016/j.molp.2018.12.012.

Matthes, Michaela S., Janlo M. Robil, Thu Tran, Ashten Kimble, and Paula Mcsteen. “Increased Transpiration Is Correlated with Reduced Boron Deficiency Symptoms in the Maize Tassel-less1 Mutant.” Physiologia Plantarum163, no. 3 (2018): 344-55. doi:10.1111/ppl.12717.

David Mendoza
Sanz, Amparo, Sharon Pike, Mather A. Khan, Àngela Carrió-Seguí, David G. Mendoza-Cózatl, Lola Peñarrubia, and Walter Gassmann. “Copper Uptake Mechanism of Arabidopsis Thaliana High-affinity COPT Transporters.” Protoplasma. 256, no. 1 (2018): 161-70. doi:10.1007/s00709-018-1286-1.

Isidra-Arellano, Mariel C., María Del Rocio Reyero-Saavedra, María Del Socorro Sánchez-Correa, Lise Pingault, Sidharth Sen, Trupti Joshi, Lourdes Girard, Norma A. Castro-Guerrero, David G. Mendoza-Cozatl, Marc Libault, and Oswaldo Valdés-López. “Phosphate Deficiency Negatively Affects Early Steps of the Symbiosis between Common Bean and Rhizobia.” 2018. doi:10.20944/preprints201809.0207.v1.

Khan, Mather A., Norma A. Castro-Guerrero, Samuel A. Mcinturf, Nga T. Nguyen, Ashley N. Dame, Jiaojiao Wang, Rebecca K. Bindbeutel, Trupti Joshi, Silvia S. Jurisson, Dmitri A. Nusinow, and David G. Mendoza-Cozatl. “Changes in Iron Availability in Arabidopsis Are Rapidly Sensed in the Leaf Vasculature and Impaired Sensing Leads to opposite Transcriptional Programs in Leaves and Roots.” Plant, Cell & Environment. 41, no. 10 (2018): 2263-276. doi:10.1111/pce.13192.

Melissa Mitchum
Masonbrink, Rick E., Thomas R. Maier, Usha Muppirala, Arun S. Seetharam, Etienne Lord, Parijat Juvale, Jeremy Schmutz, Nathan T. Johnson, Dmitry Korkin, Melissa G. Mitchum, Benjamin Mimee, Sebastian Eves-Van Den Akker, Matthew Hudson, Andrew J. Severin, and Thomas J. Baum. “The Genome of the Soybean Cyst Nematode (Heterodera Glycines) Reveals Complex Patterns of Duplications Involved in the Evolution of Parasitism Genes.” 2018. doi:10.1101/391276.

Gheysen, Godelieve, and Melissa G. Mitchum. “Phytoparasitic Nematode Control of Plant Hormone Pathways.” Plant Physiology, 2018. doi:10.1104/pp.18.01067.

Howland, Amanda, Nick Monnig, Jeff Mathesius, Manjula Nathan, and Melissa G. Mitchum. “Survey of Heterodera Glycines Population Densities and Virulence Phenotypes During 2015–2016 in Missouri.” Plant Disease102, no. 12 (2018): 2407-410. doi:10.1094/pdis-04-18-0650-sr.
Juvale, Parijat S., G. Pogorelko, J. Wang, MG Mitchum, and TJ Baum. “DIVERSE STRATEGIES EMPLOYED BY THE SOYBEAN CYST NEMATODE TO CIRCUMVENT HOST DEFENSE RESPONSES.” JOURNAL OF NEMATOLOGY, 2018.

Shannon, G., M. Crisel, S. Smothers, ML Ali, M. Clubb, S. Sleves, MG Mitchum, A. Scaboo, Z. Li, J. Bond, and P. Chen. “Registration of ‘MO 5301D CONV’Soybean.” Journal of Plant Registrations, January 12, 2018.

Chen, S., P. Lang, MG Mitchum, and X. Wang. “Functional Characterization of a Large Group of CLE Effectors Encoded by Globodera Cyst Nematodes.” AMER PHYTOPATHOLOGICAL SOC, January 10, 2018.

Barnes, Stacey N., Catherine L. Wram, Melissa G. Mitchum, and Thomas J. Baum. “The Plant-parasitic Cyst Nematode Effector GLAND4 Is a DNA-binding Protein.” Molecular Plant Pathology 19, no. 10 (2018): 2263-276. doi:10.1111/mpp.12697.

Gardner, Michael, Andi Dhroso, Nathan Johnson, Eric L. Davis, Thomas J. Baum, Dmitry Korkin, and Melissa G. Mitchum. “Novel Global Effector Mining from the Transcriptome of Early Life Stages of the Soybean Cyst Nematode Heterodera Glycines.” Scientific Reports. 8, no. 1 (2018). doi:10.1038/s41598-018-20536-5.

Ruark, Casey L., Michael Gardner, Melissa G. Mitchum, Eric L. Davis, and Tim L. Sit. “Novel RNA Viruses within Plant Parasitic Cyst Nematodes.” Plos One. 13, no. 3 (2018). doi:10.1371/journal.pone.0193881.

Verma, Anju, Chris Lee, Stephanie Morriss, Fiona Odu, Charlotte Kenning, Nancy Rizzo, William G. Spollen, Marriam Lin, Amanda G. Mcrae, Scott A. Givan, Tarek Hewezi, Richard Hussey, Eric L. Davis, Thomas J. Baum, and Melissa G. Mitchum. “The Novel Cyst Nematode Effector Protein 30D08 Targets Host Nuclear Functions to Alter Gene Expression in Feeding Sites.” New Phytologist. 219, no. 2 (2018): 697-713. doi:10.1111/nph.15179.

Scott Peck
Ishikawa, Shinnosuke, José Barrero, Fuminori Takahashi, Scott Peck, Frank Gubler, Kazuo Shinozaki, and Taishi Umezawa. “Comparative Phosphoproteomic Analysis of Barley Embryos with Different Dormancy during Imbibition.” International Journal of Molecular Sciences20, no. 2 (2019): 451. doi:10.3390/ijms20020451.

Jiang, Lingyan, Yinhua Chen, Lijuan Luo, and Scott C. Peck. “Central Roles and Regulatory Mechanisms of Dual-Specificity MAPK Phosphatases in Developmental and Stress Signaling.” Frontiers in Plant Science. 9 (2018). doi:10.3389/fpls.2018.01697.

Peck, Scott C. “Proteomics: Setting the Stage for Systems Biology.” Plant Systems Biology: 243-57. doi:10.1002/9781444312249.ch8.

Michael Petris
Chun, Haarin, Tamara Korolnek, Chul-Jin Lee, H. Jerome Coyne, Dennis R. Winge, Byung-Eun Kim, and Michael J. Petris. “An Extracellular Histidine-containing Motif in the Zinc Transporter ZIP4 Plays a Role in Zinc Sensing and Zinc-induced Endocytosis in Mammalian Cells.” Journal of Biological Chemistry. 294, no. 8 (2018): 2815-826. doi:10.1074/jbc.ra118.005203.

Woods, Lt, Jm Camden, Mg Khalafalla, Mj Petris, L. Erb, Jl Ambrus, and Ga Weisman. “P2Y2R Deletion Ameliorates Sialadenitis in IL-14α-transgenic Mice.” Oral Diseases. 24, no. 5 (2018): 761-71. doi:10.1111/odi.12823.

Zlatic, Stephanie A., Alysia Vrailas-Mortimer, Avanti Gokhale, Lucas J. Carey, Elizabeth Scott, Reid Burch, Morgan M. Mccall, Samantha Rudin-Rush, John Bowen Davis, Cortnie Hartwig, Erica Werner, Lian Li, Michael Petris, and Victor Faundez. “Rare Disease Mechanisms Identified by Genealogical Proteomics of Copper Homeostasis Mutant Pedigrees.” Cell Systems. 6, no. 3 (2018). doi:10.1016/j.cels.2018.01.008.

David Pintel
Cotmore, Susan F., Mavis Agbandje-Mckenna, Marta Canuti, John A. Chiorini, Anna-Maria Eis-Hubinger, Joseph Hughes, Mario Mietzsch, Sejal Modha, Mylène Ogliastro, Judit J. Pénzes, David J. Pintel, Jianming Qiu, Maria Soderlund-Venermo, Peter Tattersall, and Peter Tijssen. “ICTV Virus Taxonomy Profile: Parvoviridae.” Journal of General Virology. 100, no. 3 (2019): 367-68. doi:10.1099/jgv.0.001212.

Dong, Yanming, Olufemi O. Fasina, and David J. Pintel. “The Human Bocavirus 1 NP1 Protein Is a Multifunctional Regulator of Viral RNA Processing.” Journal of Virology. 92, no. 22 (2018). doi:10.1128/jvi.01187-18.

Dong, Yanming, Olufemi O. Fasina, and David J. Pintel. “Minute Virus of Canines NP1 Protein Interacts with the Cellular Factor CPSF6 To Regulate Viral Alternative RNA Processing.” Journal of Virology. 93, no. 2 (2018). doi:10.1128/jvi.01530-18.

Majumder, Kinjal, Juexin Wang, Maria Boftsi, Matthew S. Fuller, Jordan E. Rede, Trupti Joshi, and David J. Pintel. “Parvovirus Minute Virus of Mice Interacts with Sites of Cellular DNA Damage to Establish and Amplify Its Lytic Infection.” ELife. 7 (2018). doi:10.7554/elife.37750.

Chris Pires
Blischak, Paul D., Makenzie E. Mabry, Gavin C. Conant, and J. Chris Pires. “Integrating Networks, Phylogenomics, and Population Genomics for the Study of Polyploidy.” Annual Review of Ecology, Evolution, and Systematics. 49, no. 1 (2018): 253-78. doi:10.1146/annurev-ecolsys-121415-032302.

Edger, Patrick P., Jocelyn C. Hall, Alex Harkess, Michelle Tang, Jill Coombs, Setareh Mohammadin, M. Eric Schranz, Zhiyong Xiong, James Leebens-Mack, Blake C. Meyers, Kenneth J. Sytsma, Marcus A. Koch, Ihsan A. Al-Shehbaz, and J. Chris Pires. “Brassicales Phylogeny Inferred from 72 Plastid Genes: A Reanalysis of the Phylogenetic Localization of Two Paleopolyploid Events and Origin of Novel Chemical Defenses.” American Journal of Botany. 105, no. 3 (2018): 463-69. doi:10.1002/ajb2.1040.

Emery, Marianne, M. Madeline S. Willis, Yue Hao, Kerrie Barry, Khouanchy Oakgrove, Yi Peng, Jeremy Schmutz, Eric Lyons, J. Chris Pires, Patrick P. Edger, and Gavin C. Conant. “Preferential Retention of Genes from One Parental Genome after Polyploidy Illustrates the Nature and Scope of the Genomic Conflicts Induced by Hybridization.” PLOS Genetics. 14, no. 3 (2018). doi:10.1371/journal.pgen.1007267.

Givnish, Thomas J., Alejandro Zuluaga, Daniel Spalink, Marybel Soto Gomez, Vivienne K. Y. Lam, Jeffrey M. Saarela, Chodon Sass, William J. D. Iles, Danilo José Lima De Sousa, James Leebens-Mack, J. Chris Pires, Wendy B. Zomlefer, Maria A. Gandolfo, Jerrold I. Davis, Dennis W. Stevenson, Claude Depamphilis, Chelsea D. Specht, Sean W. Graham, Craig F. Barrett, and Cécile Ané. “Monocot Plastid Phylogenomics, Timeline, Net Rates of Species Diversification, the Power of Multi-gene Analyses, and a Functional Model for the Origin of Monocots.” American Journal of Botany. 105, no. 11 (2018): 1888-910. doi:10.1002/ajb2.1178.

Hao, Yue, Jacob D. Washburn, Jacob Rosenthal, Brandon Nielsen, Eric Lyons, Patrick P. Edger, J. Chris Pires, and Gavin C. Conant. “Patterns of Population Variation in Two Paleopolyploid Eudicot Lineages Suggest That Dosage-Based Selection on Homeologs Is Long-Lived.” Genome Biology and Evolution. 10, no. 3 (2018): 999-1011. doi:10.1093/gbe/evy061.

Hurgobin, Bhavna, Agnieszka A. Golicz, Philipp E. Bayer, Chon-Kit Kenneth Chan, Soodeh Tirnaz, Aria Dolatabadian, Sarah V. Schiessl, Birgit Samans, Juan D. Montenegro, Isobel A. P. Parkin, J. Chris Pires, Boulos Chalhoub, Graham J. King, Rod Snowdon, Jacqueline Batley, and David Edwards. “Homoeologous Exchange Is a Major Cause of Gene Presence/absence Variation in the Amphidiploid Brassica Napus.” Plant Biotechnology Journal. 16, no. 7 (2018): 1265-274. doi:10.1111/pbi.12867.

Li, Mao, Hong An, Ruthie Angelovici, Clement Bagaza, Albert Batushansky, Lynn Clark, Viktoriya Coneva, Michael J. Donoghue, Erika Edwards, Diego Fajardo, Hui Fang, Margaret H. Frank, Timothy Gallaher, Sarah Gebken, Theresa Hill, Shelley Jansky, Baljinder Kaur, Phillip C. Klahs, Laura L. Klein, Vasu Kuraparthy, Jason Londo, Zoë Migicovsky, Allison Miller, Rebekah Mohn, Sean Myles, Wagner C. Otoni, J. C. Pires, Edmond Rieffer, Sam Schmerler, Elizabeth Spriggs, Christopher N. Topp, Allen Van Deynze, Kuang Zhang, Linglong Zhu, Braden M. Zink, and Daniel H. Chitwood. “Topological Data Analysis as a Morphometric Method: Using Persistent Homology to Demarcate a Leaf Morphospace.” Frontiers in Plant Science. 9 (2018). doi:10.3389/fpls.2018.00553.

Mohammadin, Setareh, Wei Wang, Ting Liu, Hamid Moazzeni, Kuddisi Ertugrul, Tuna Uysal, Charalambos S. Christodoulou, Patrick P. Edger, J. Chris Pires, Stephen I. Wright, and M. Eric Schranz. “Genome-wide Nucleotide Diversity and Associations with Geography, Ploidy Level and Glucosinolate Profiles in Aethionema Arabicum (Brassicaceae).” Plant Systematics and Evolution. 304, no. 5 (2018): 619-30. doi:10.1007/s00606-018-1494-3.

Peer, Yves Van De, and J. Chris Pires. “Editorial Overview: Genome Studies and Molecular Genetics: Treasure Troves of Evolution.” Current Opinion in Plant Biology. 42 (2018): Iii-V. doi:10.1016/j.pbi.2018.04.015.

Smith, Stacey D., Ruthie Angelovici, Karolina Heyduk, Hiroshi A. Maeda, Gaurav D. Moghe, J. Chris Pires, Joshua R. Widhalm, and Jennifer H. Wisecaver. “The Renaissance of Comparative Biochemistry.” American Journal of Botany, January 1, 2019.

Unruh, Sarah A., Michael R. Mckain, Yung-I Lee, Tomohisa Yukawa, Melissa K. Mccormick, Richard P. Shefferson, Ann Smithson, James H. Leebens-Mack, and J. Chris Pires. “Phylotranscriptomic Analysis and Genome Evolution of the Cypripedioideae (Orchidaceae).” American Journal of Botany. 105, no. 4 (2018): 631-40. doi:10.1002/ajb2.1047.

Wang, Jiameng, Jennifer J. Cappa, Jonathan P. Harris, Patrick P. Edger, Wen Zhou, J. Chris Pires, Michael Adair, Sarah A. Unruh, Mark P. Simmons, Michela Schiavon, and Elizabeth A. H. Pilon-Smits. “Transcriptome-wide Comparison of Selenium Hyperaccumulator and Nonaccumulator Stanleya Species Provides New Insight into Key Processes Mediating the Hyperaccumulation Syndrome.” Plant Biotechnology Journal. 16, no. 9 (2018): 1582-594. doi:10.1111/pbi.12897.

Wang, Jiameng, Jennifer J. Cappa, Jonathan P. Harris, Patrick P. Edger, Wen Zhou, J. Chris Pires, Michael Adair, Sarah A. Unruh, Mark P. Simmons, Michela Schiavon, and Elizabeth A. H. Pilon-Smits. “Transcriptome-wide Comparison of Selenium Hyperaccumulator and Nonaccumulator Stanleya Species Provides New Insight into Key Processes Mediating the Hyperaccumulation Syndrome.” Plant Biotechnology Journal. 16, no. 9 (2018): 1582-594. doi:10.1111/pbi.12897.

Wilhelmsson, Per K. I., Jake O. Chandler, Noe Fernandez-Pozo, Kai Graeber, Kristian K. Ullrich, Waheed Arshad, Safina Khan, Johannes A. Hofberger, Karl Buchta, Patrick P. Edger, J. Chris Pires, M. Eric Schranz, Gerhard Leubner-Metzger, and Stefan A. Rensing. “Usability of Reference-free Transcriptome Assemblies for Detection of Differential Expression: A Case Study on Aethionema Arabicum Dimorphic Seeds.” BMC Genomics. 20, no. 1 (2019). doi:10.1186/s12864-019-5452-4.

Michael Roberts
Bayer, Avraham, Nicholas J. Lennemann, Yingshi Ouyang, Elena Sadovsky, Megan A. Sheridan, R. Michael Roberts, Carolyn B. Coyne, and Yoel Sadovsky. “Chromosome 19 MicroRNAs Exert Antiviral Activity Independent from Type III Interferon Signaling.” Placenta. 61 (2018): 33-38. doi:10.1016/j.placenta.2017.11.004.

Karvas, Rowan M., Ying Yang, Toshihiko Ezashi, Danny J. Schust, R. Michael Roberts, and Laura C. Schulz. “ITGA1 Is Upregulated in Response to Oxygen over Time in a BMP4 Model of Trophoblast.” Molecular Reproduction and Development. 85, no. 8-9 (2018): 738-39. doi:10.1002/mrd.23047.

Karvas, Rowan M., Ying Yang, Toshihiko Ezashi, Danny J. Schust, R. Michael Roberts, and Laura C. Schulz. “Cover Image, Volume 85, Issue 8–9, August 2018.” Molecular Reproduction and Development. 85, no. 8-9 (August 2018): I.

Roberts, R. Michael, Toshihiko Ezashi, Megan A. Sheridan, and Ying Yang. “Specification of Trophoblast from Embryonic Stem Cells Exposed to BMP4†.” Biology of Reproduction. 99, no. 1 (2018): 212-24. doi:10.1093/biolre/ioy070.

Roberts, R. Michael, and Toshihiko Ezashi. “Pregnancy Recognition Signals With an Emphasis on Ruminants.” Encyclopedia of Reproduction, 2018, 383-87. doi:10.1016/b978-0-12-801238-3.64658-5.

Sheridan, Megan A., Velmurugan Balaraman, Danny J. Schust, Toshihiko Ezashi, R. Michael Roberts, and Alexander W. E. Franz. “African and Asian Strains of Zika Virus Differ in Their Ability to Infect and Lyse Primitive Human Placental Trophoblast.” Plos One. 13, no. 7 (2018). doi:10.1371/journal.pone.0200086.

Sheridan, Megan A., Ying Yang, Ashish Jain, Alex S. Lyons, Penghua Yang, Sambasiva R. Brahmasani, Aihua Dai, Yuchen Tian, Mark R. Ellersieck, Geetu Tuteja, Danny J. Schust, Laura C. Schulz, Toshihiko Ezashi, and R. Michael Roberts. “Early Onset Preeclampsia in a Model for Human Placental Trophoblast.” Proceedings of the National Academy of Sciences. 116, no. 10 (March 5, 2019): 4336-345.

Yuan, Y., L. D. Spate, B. K. Redel, R. S. Prather, and R. M. Roberts. “162 Supplementation of Fibroblast Growth Factor 2, Leukemia Inhibitory Factor, and Insulin-Like Growth Factor 1 (FLI) Enables Efficient Production of Competent Porcine Oocytes Without Gonadotropins in the Maturation Medium.” Reproduction, Fertility and Development. 30, no. 1 (2018): 220. doi:10.1071/rdv30n1ab162.

Cheryl Rosenfeld
Baran, David A., Cheryl Rosenfeld, and Mark J. Zucker. “Corticosteroid Weaning in Stable Heart Transplant Patients: Guidance by Serum Cortisol Level.” Journal of Transplantation (2018): 1-6. doi:10.1155/2018/3740395.

Bax, Erin N., Karlee E. Cochran, Jiude Mao, Charles E. Wiedmeyer, and Cheryl S. Rosenfeld. “Opposing Effects of S-equol Supplementation on Metabolic and Behavioral Parameters in Mice Fed a High-fat Diet.” Nutrition Research. 64 (2019): 39-48. doi:10.1016/j.nutres.2018.12.008.

Belenchia, Anthony M., Karen L. Jones, Matthew Will, David Q. Beversdorf, Victoria Vieira-Potter, Cheryl S. Rosenfeld, and Catherine A. Peterson. “Maternal Vitamin D Deficiency during Pregnancy Affects Expression of Adipogenic-regulating Genes Peroxisome Proliferator-activated Receptor Gamma (PPARγ) and Vitamin D Receptor (VDR) in Lean Male Mice Offspring.” European Journal of Nutrition. 57, no. 2 (2016): 723-30. doi:10.1007/s00394-016-1359-x.

Cheong, Ana, Sarah A. Johnson, Emily C. Howald, Mark R. Ellersieck, Luísa Camacho, Sherry M. Lewis, Michelle M. Vanlandingham, Jun Ying, Shuk-Mei Ho, and Cheryl S. Rosenfeld. “Gene Expression and DNA Methylation Changes in the Hypothalamus and Hippocampus of Adult Rats Developmentally Exposed to Bisphenol A or Ethinyl Estradiol: A CLARITY-BPA Consortium Study.” Epigenetics. 13, no. 7 (2018): 704-20. doi:10.1080/15592294.2018.1497388.

Johnson, Sarah A., Mark R. Ellersieck, and Cheryl S. Rosenfeld. “Hypothalamic Gene Expression Changes in F1 California Mice (Peromyscus Californicus) Parents Developmentally Exposed to Bisphenol A or Ethinyl Estradiol.” Heliyon. 4, no. 6 (2018). doi:10.1016/j.heliyon.2018.e00672.

Johnson, Sarah A., Michelle J. Farrington, Claire R. Murphy, Paul D. Caldo, Leif A. Mcallister, Sarabjit Kaur, Catherine Chun, Madison T. Ortega, Brittney L. Marshall, Frauke Hoffmann, Mark R. Ellersieck, A. Katrin Schenk, and Cheryl S. Rosenfeld. “Multigenerational Effects of Bisphenol A or Ethinyl Estradiol Exposure on F2 California Mice (Peromyscus Californicus) Pup Vocalizations.” Plos One. 13, no. 6 (2018). doi:10.1371/journal.pone.0199107.

Ortega, Madison T., Nathan J. Bivens, Takamichi Jogahara, Asato Kuroiwa, Scott A. Givan, and Cheryl S. Rosenfeld. “Sexual Dimorphism in Brain Transcriptomes of Amami Spiny Rats (Tokudaia Osimensis): A Rodent Species Where Males Lack the Y Chromosome.” BMC Genomics. 20, no. 1 (2019). doi:10.1186/s12864-019-5426-6.

Rosenfeld, Cheryl S., Dusti A. Shay, and Victoria J. Vieira-Potter. “Cognitive Effects of Aromatase and Possible Role in Memory Disorders.” Frontiers in Endocrinology. 9 (2018). doi:10.3389/fendo.2018.00610.

Rosenfeld, Cheryl S., Angela B. Javurek, Sarah A. Johnson, Zhentian Lei, Lloyd W. Sumner, and Rex A. Hess. “Seminal Fluid Metabolome and Epididymal Changes after Antibiotic Treatment in Mice.” Reproduction. 156, no. 1 (2018): 1-10. doi:10.1530/rep-18-0072.

Rosenfeld, Cheryl S. “Male Reproductive Tract Cilia Beat to a Different Drummer.” Proceedings of the National Academy of Sciences. 116, no. 9 (2019): 3361-363. doi:10.1073/pnas.1900112116.

Rosenfeld, Cheryl S., and Paul S. Cooke. “Endocrine Disruption through Membrane Estrogen Receptors and Novel Pathways Leading to Rapid Toxicological and Epigenetic Effects.” The Journal of Steroid Biochemistry and Molecular Biology. 187 (2019): 106-17. doi:10.1016/j.jsbmb.2018.11.007.

Shay, Dusti A., Victoria J. Vieira-Potter, and Cheryl S. Rosenfeld. “Sexually Dimorphic Effects of Aromatase on Neurobehavioral Responses.” Frontiers in Molecular Neuroscience. 11 (2018). doi:10.3389/fnmol.2018.00374.

Vieira-Potter, Victoria J., Tzu-Wen L. Cross, Kelly S. Swanson, Saurav J. Sarma, Zhentian Lei, Lloyd W. Sumner, and Cheryl S. Rosenfeld. “Soy-Induced Fecal Metabolome Changes in Ovariectomized and Intact Female Rats: Relationship with Cardiometabolic Health.” Scientific Reports. 8, no. 1 (2018). doi:10.1038/s41598-018-35171-3.

Gary Stacey
Alves, Luis Paulo Silveira, Fernanda Plucani Do Amaral, Daewon Kim, Maritza Todo Bom, Manuel Piñero Gavídia, Cícero Silvano Teixeira, Fernanda Holthman, Fabio De Oliveira Pedrosa, Emanuel Maltempi De Souza, Leda Satie Chubatsu, Marcelo Müller-Santos, and Gary Stacey. “Importance of Poly-3-Hydroxybutyrate Metabolism to the Ability of Herbaspirillum Seropedicae To Promote Plant Growth.” Applied and Environmental Microbiology. 85, no. 6 (2019). doi:10.1128/aem.02586-18.

Perroud, Pierre‐François, Fabian B. Haas, Manuel Hiss, Kristian K. Ullrich, Alessandro Alboresi, Mojgan Amirebrahimi, Kerrie Barry, Roberto Bassi, Sandrine Bonhomme, Haodong Chen, Juliet C. Coates, Tomomichi Fujita, Anouchka Guyon‐Debast, Daniel Lang, Junyan Lin, Anna Lipzen, Fabien Nogué, Melvin J. Oliver, Inés Ponce De León, Ralph S. Quatrano, Catherine Rameau, Bernd Reiss, Ralf Reski, Mariana Ricca, Younousse Saidi, Ning Sun, Péter Szövényi, Avinash Sreedasyam, Jane Grimwood, Gary Stacey, Jeremy Schmutz, and Stefan A. Rensing. “The Physcomitrella Patens Gene Atlas Project: Large‐scale RNA‐seq Based Expression Data.” The Plant Journal. 95, no. 1 (July 2018): 168-82.

Shang-Guan, Keke, Min Wang, Nang Myint Phyu Sin Htwe, Ping Li, Yaoshen Li, Fan Qi, Dawei Zhang, Min Cao, Chanhong Kim, Haiyong Weng, Haiyan Cen, Ian M. Black, Parastoo Azadi, Russell W. Carlson, Gary Stacey, and Yan Liang. “Lipopolysaccharides Trigger Two Successive Bursts of Reactive Oxygen Species at Distinct Cellular Locations.” Plant Physiology. 176, no. 3 (2018): 2543-556. doi:10.1104/pp.17.01637.

Song, Lihui, Beverly Agtuca, Michael J. Schueller, Silvia S. Jurisson, Gary Stacey, and Richard A. Ferrieri. “Relationship Between Carbon Mobilization and Root Growth Measured by Carbon-11 Tracer in Arabidopsis Starch Mutants.” Journal of Plant Growth Regulation, 2018. doi:10.1007/s00344-018-9824-9.

Stopka, Sylwia A., Rikkita Khattar, Beverly J. Agtuca, Christopher R. Anderton, Ljiljana Paša-Tolić, Gary Stacey, and Akos Vertes. “Metabolic Noise and Distinct Subpopulations Observed by Single Cell LAESI Mass Spectrometry of Plant Cells in Situ.” Frontiers in Plant Science. 9 (2018). doi:10.3389/fpls.2018.01646.

Stopka, Sylwia A., Laith Z. Samarah, Jared B. Shaw, Andrey V. Liyu, Dušan Veličković, Beverly J. Agtuca, Caroline Kukolj, David W. Koppenaal, Gary Stacey, Ljiljana Paša-Tolić, Christopher R. Anderton, and Akos Vertes. “Ambient Metabolic Profiling and Imaging of Biological Samples with Ultrahigh Molecular Resolution Using Laser Ablation Electrospray Ionization 21 Tesla FTICR Mass Spectrometry.” Analytical Chemistry, 2019. doi:10.1021/acs.analchem.8b05084.

Tripathi, Diwaker, Tong Zhang, Abraham J. Koo, Gary Stacey, and Kiwamu Tanaka. “Extracellular ATP Acts on Jasmonate Signaling to Reinforce Plant Defense.” Plant Physiology. 176, no. 1 (2017): 511-23. doi:10.1104/pp.17.01477.

Veličković, Dušan, Beverly J. Agtuca, Sylwia A. Stopka, Akos Vertes, David W. Koppenaal, Ljiljana Paša-Tolić, Gary Stacey, and Christopher R. Anderton. “Observed Metabolic Asymmetry within Soybean Root Nodules Reflects Unexpected Complexity in Rhizobacteria-legume Metabolite Exchange.” The ISME Journal. 12, no. 9 (2018): 2335-338. doi:10.1038/s41396-018-0188-8.

Wongkaew, Arunee, Koki Asayama, Taisuke Kitaiwa, Shin-Ichi Nakamura, Katsuhiro Kojima, Gary Stacey, Hitoshi Sekimoto, Tadashi Yokoyama, and Naoko Ohkama-Ohtsu. “AtOPT6 Protein Functions in Long-Distance Transport of Glutathione in Arabidopsis Thaliana.” Plant and Cell Physiology, 2018. doi:10.1093/pcp/pcy074.

George Stewart
Adkins, P.r.f., S. Dufour, J.n. Spain, M.j. Calcutt, T.j. Reilly, G.c. Stewart, and J.r. Middleton. “Cross-sectional Study to Identify Staphylococcal Species Isolated from Teat and Inguinal Skin of Different-aged Dairy Heifers.” Journal of Dairy Science. 101, no. 4 (2018): 3213-225. doi:10.3168/jds.2017-13974.

Adkins, P.r.f., S. Dufour, J.n. Spain, M.j. Calcutt, T.j. Reilly, G.c. Stewart, and J.r. Middleton. “Molecular Characterization of Non-aureus Staphylococcus Spp. from Heifer Intramammary Infections and Body Sites.” Journal of Dairy Science. 101, no. 6 (2018): 5388-403. doi:10.3168/jds.2017-13910.

Boone, Tyler J., Michael Mallozzi, Alex Nelson, Brian Thompson, Mark Khemmani, Dörte Lehmann, Alexis Dunkle, Paul Hoeprich, Amy Rasley, George Stewart, and Adam Driks. “Coordinated Assembly of the Bacillus Anthracis Coat and Exosporium during Bacterial Spore Outer Layer Formation.” MBio. 9, no. 6 (2018). doi:10.1128/mbio.01166-18.

Ho, Khanh-Van, Zhentian Lei, Lloyd Sumner, Mark Coggeshall, Hsin-Yeh Hsieh, George Stewart, and Chung-Ho Lin. “Identifying Antibacterial Compounds in Black Walnuts (Juglans Nigra) Using a Metabolomics Approach.” Metabolites. 8, no. 4 (2018): 58. doi:10.3390/metabo8040058.

Lloyd Sumner
Busi, Susheel Bhanu, Zhentian Lei, Lloyd Sumner, and James Amos-Landgraf. “Abstract 2400: Complex Gut Microbiota Modulate Rat Colon Adenoma Susceptibility, Metabolites, and Host Gene Expression.” Cancer Research. 78, no. 13 Supplement (2018): 2400. doi:10.1158/1538-7445.am2018-2400.

Ho, Khanh-Van, Zhentian Lei, Lloyd Sumner, Mark Coggeshall, Hsin-Yeh Hsieh, George Stewart, and Chung-Ho Lin. “Identifying Antibacterial Compounds in Black Walnuts (Juglans Nigra) Using a Metabolomics Approach.” Metabolites. 8, no. 4 (2018): 58. doi:10.3390/metabo8040058.

Kera, Kota, Dennis D. Fine, Daniel J. Wherritt, Yoshiki Nagashima, Norimoto Shimada, Takeshi Ara, Yoshiyuki Ogata, Lloyd W. Sumner, and Hideyuki Suzuki. “Pathway-specific Metabolome Analysis with 18O2-labeled Medicago Truncatula via a Mass Spectrometry-based Approach.” Metabolomics. 14, no. 5 (2018). doi:10.1007/s11306-018-1364-6.

Lei, Zhentian, Clayton Kranawetter, Barbara Sumner, David Huhman, Daniel Wherritt, Andrew Thomas, Charles Rohla, and Lloyd Sumner. “Metabolomics of Two Pecan Varieties Provides Insights into Scab Resistance.” Metabolites. 8, no. 4 (2018): 56. doi:10.3390/metabo8040056.

Lei, Zhentian, Barbara W. Sumner, Anil Bhatia, Saurav J. Sarma, and Lloyd W. Sumner. “UHPLC-MS Analyses of Plant Flavonoids.” Current Protocols in Plant Biology. 4, no. 1 (2018). doi:10.1002/cppb.20085.

Moskowitz, Jacob E., Zhentian Lei, Susheel Busi, Marcia Hart, Craig Franklin, Lloyd Sumner, and James Amos-Landgraf. “Abstract 4076: Gut Microbiota and Metabolite-driven Phenotype Modulation in a Mouse Model of Colorectal Cancer.” Cancer Research. 78, no. 13 Supplement (2018): 4076. doi:10.1158/1538-7445.am2018-4076.

Qiu, Feng, Zhentian Lei, and Lloyd W. Sumner. “MetExpert: An Expert System to Enhance Gas Chromatography‒mass Spectrometry-based Metabolite Identifications.” Analytica Chimica Acta. 1037 (2018): 316-26. doi:10.1016/j.aca.2018.03.052.

Rosenfeld, Cheryl S., Angela B. Javurek, Sarah A. Johnson, Zhentian Lei, Lloyd W. Sumner, and Rex A. Hess. “Seminal Fluid Metabolome and Epididymal Changes after Antibiotic Treatment in Mice.” Reproduction. 156, no. 1 (2018): 1-10. doi:10.1530/rep-18-0072.

Serra-Clusellas, Anna, Laura De Angelis, Chung-Ho Lin, Phuc Vo, Mohamed Bayati, Lloyd Sumner, Zhentian Lei, Nathalia B. Amaral, Liliana M. Bertini, Jose Mazza, Luis R. Pizzio, Jorge D. Stripeikis, Julián A. Rengifo-Herrera, and María M. Fidalgo De Cortalezzi. “Abatement of 2,4-D by H2O2 Solar Photolysis and Solar Photo-Fenton-like Process with Minute Fe(III) Concentrations.” Water Research. 144 (2018): 572-80. doi:10.1016/j.watres.2018.07.072.

Sumner, Lloyd W., Dong Sik Yang, Bennie J. Bench, Bonnie S. Watson, Chao Li, and A. Daniel Jones. “Spatially Resolved Plant Metabolomics.” Annual Plant Reviews, Volume 43, 2011, 343-66. doi:10.1002/9781444339956.ch11.

Vieira-Potter, Victoria J., Tzu-Wen L. Cross, Kelly S. Swanson, Saurav J. Sarma, Zhentian Lei, Lloyd W. Sumner, and Cheryl S. Rosenfeld. “Soy-Induced Fecal Metabolome Changes in Ovariectomized and Intact Female Rats: Relationship with Cardiometabolic Health.” Scientific Reports. 8, no. 1 (2018). doi:10.1038/s41598-018-35171-3.

Vu, Danh C., Zhentian Lei, Lloyd W. Sumner, Mark V. Coggeshall, and Chung-Ho Lin. “Identification and Quantification of Phytosterols in Black Walnut Kernels.” Journal of Food Composition and Analysis. 75 (2019): 61-69. doi:10.1016/j.jfca.2018.09.016.

Jay Thelen
Ahsan, Nagib, Rashaun S. Wilson, and Jay J. Thelen. “Absolute Quantitation of Plant Proteins.” Current Protocols in Plant Biology. 3, no. 1 (2018): 1-13. doi:10.1002/cppb.20064.

Gruzdev, V.e., D. Korkin, B.p. Mooney, J.f. Havelund, I.m. Moller, and J.j. Thelen. “Controlled Chemical Modification of Biomolecules by Femtosecond Laser in Polar Liquids.” 2018 International Conference Laser Optics (ICLO), 2018. doi:10.1109/lo.2018.8435786.

Gruzdev, Vitaly, Dmitry Korkin, Brian P. Mooney, Jesper F. Havelund, Ian Max Møller, and Jay J. Thelen. “Controlled Laser Biochemistry in Room-temperature Polar Liquids by Ultrashort Laser Pulses.” Conference on Lasers and Electro-Optics, 2018. doi:10.1364/cleo_at.2018.am3p.5.

Li-Beisson, Yonghua, Jay J. Thelen, Eric Fedosejevs, and John L. Harwood. “The Lipid Biochemistry of Eukaryotic Algae.” Progress in Lipid Research. 74 (2019): 31-68. doi:10.1016/j.plipres.2019.01.003.

Mcclain, Scott, Severin E. Stevenson, Cavell Brownie, Corinne Herouet-Guicheney, Rod A. Herman, Gregory S. Ladics, Laura Privalle, Jason M. Ward, Nancy Doerrer, and Jay J. Thelen. “Variation in Seed Allergen Content From Three Varieties of Soybean Cultivated in Nine Different Locations in Iowa, Illinois, and Indiana.” Frontiers in Plant Science. 9 (2018). doi:10.3389/fpls.2018.01025.

Passamani, Lucas Z., Amanda A. Bertolazi, Alessandro C. Ramos, Claudete Santa-Catarina, Jay J. Thelen, and Vanildo Silveira. “Embryogenic Competence Acquisition in Sugar Cane Callus Is Associated with Differential H -Pump Abundance and Activity.” Journal of Proteome Research. 17, no. 8 (2018): 2767-779. doi:10.1021/acs.jproteome.8b00213.

Strodtman, Kent, Sooyoung Frank, Severin Stevenson, Jay Thelen, and David Emerich. “Proteomic Characterization of Bradyrhizobium Diazoefficiens Bacteroids Reveals a Post-Symbiotic, Hemibiotrophic-Like Lifestyle of the Bacteria within Senescing Soybean Nodules.” International Journal of Molecular Sciences. 19, no. 12 (2018): 3947. doi:10.3390/ijms19123947.

Wilson, Rashaun S., and Jay J. Thelen. “In Vivo Quantitative Monitoring of Subunit Stoichiometry for Metabolic Complexes.” Journal of Proteome Research. 17, no. 5 (2018): 1773-783. doi:10.1021/acs.jproteome.7b00756.

Zhang, Ning, R. S. P. Rao, Fernanda Salvato, Jesper F. Havelund, Ian M. Møller, Jay J. Thelen, and Dong Xu. “MU-LOC: A Machine-Learning Method for Predicting Mitochondrially Localized Proteins in Plants.” Frontiers in Plant Science. 9 (2018). doi:10.3389/fpls.2018.00634.

Zhou, Xin, Xiaobing Chen, Zhenghua Du, Yi Zhang, Wenjing Zhang, Xiangrui Kong, Jay J. Thelen, Changsong Chen, and Mingjie Chen. “Terpenoid Esters Are the Major Constituents From Leaf Lipid Droplets of Camellia Sinensis.” Frontiers in Plant Science. 10 (2019). doi:10.3389/fpls.2019.00179.

Gary Weisman
Ambrus, Julian L., Jr., Alexander Jacob, Gary A. Weisman, and Jing He. “Metabolic Changes in the Evolution of Sjogren’s Syndrome in a Mouse Model.” CLINICAL AND EXPERIMENTAL RHEUMATOLOGY. 36, no. 3 (January 1, 2018): S301.

Erb, Laurie, Lucas T. Woods, Mahmoud G. Khalafalla, and Gary A. Weisman. “Purinergic Signaling in Alzheimer’s Disease.” Brain Research Bulletin, November 22, 2018.

Martin, Adam L., Mahmoud G. Khalafalla, Kimberly J. Jasmer-McDonald, Lucas T. Woods, Jean M. Camden, Laurie Erb, and Gary A. Weisman. “P2X7 and P2Y2 Receptors as Therapeutic Targets in Sjogren’s Syndrome Mouse Models.” CLINICAL AND EXPERIMENTAL RHEUMATOLOGY. 36, no. 3 (January 1, 2018): S282-283.

Voynova, Elisaveta, Tamer Mahmoud, Lucas T. Woods, Gary A. Weisman, Rachel Ettinger, and Helen Braley-Mullen. “Requirement for CD40/CD40L Interactions for Development of Autoimmunity Differs Depending on Specific Checkpoint and Costimulatory Pathways.” ImmunoHorizons. 2, no. 1 (2018): 54-66. doi:10.4049/immunohorizons.1700069.

Weisman, Gary A. “Targeting P2Y2 and P2X7 Receptors in Salivary Glands in the Autoimmune Disease Sjogren’s Syndrome.” PURINERGIC SIGNALLING, December 1, 2018, S19.

Woods, Lucas T., Jean M. Camden, Mahmoud G. Khalafalla, Michael J. Petris, Laurie Erb, JL Ambrus, Jr., and Gary A. Weisman. “P2Y2R Deletion Ameliorates Sialadenitis in IL‐14α‐transgenic Mice.” Oral Diseases. 24, no. 5 (July 2018): 761-71.

Dong Xu
Dickinson, Matthew, Saptarshi Debroy, Prasad Calyam, Samaikya Valluripally, Yuanxun Zhang, Ronny Bazan Antequera, Trupti Joshi, Tommi White, and Dong Xu. “Multi-cloud Performance and Security Driven Federated Workflow Management.” IEEE Transactions on Cloud Computing, 2018, 1. doi:10.1109/tcc.2018.2849699.

Do, Tuyen D., Tri D. Vuong, David Dunn, Scotty Smothers, Gunvant Patil, Dennis C. Yungbluth, Pengyin Chen, Andrew Scaboo, Dong Xu, Thomas E. Carter, Henry T. Nguyen, and J. Grover Shannon. “Mapping and Confirmation of Loci for Salt Tolerance in a Novel Soybean Germplasm, Fiskeby III.” Theoretical and Applied Genetics. 131, no. 3 (2017): 513-24. doi:10.1007/s00122-017-3015-0.

Fang, Chao, Yi Shang, and Dong Xu. “Prediction of Protein Backbone Torsion Angles Using Deep Residual Inception Neural Networks.” IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2018, 1. doi:10.1109/tcbb.2018.2814586.

Fang, Chao, Yi Shang, and Dong Xu. “MUFOLD-SS: New Deep Inception-inside-inception Networks for Protein Secondary Structure Prediction.” Proteins: Structure, Function, and Bioinformatics. 86, no. 5 (2018): 592-98. doi:10.1002/prot.25487.

Fang, Chao, Yi Shang, and Dong Xu. “Improving Protein Gamma-Turn Prediction Using Inception Capsule Networks.” Scientific Reports. 8, no. 1 (2018). doi:10.1038/s41598-018-34114-2.

He, Fei, Rui Wang, Jiagen Li, Lingling Bao, Dong Xu, and Xiaowei Zhao. “Large-scale Prediction of Protein Ubiquitination Sites Using a Multimodal Deep Architecture.” BMC Systems Biology. 12, no. S6 (2018). doi:10.1186/s12918-018-0628-0.

Jiang, Yuexu, Duolin Wang, and Dong Xu. “DeepDom: Predicting Protein Domain Boundary from Sequence Alone Using Stacked Bidirectional LSTM.” Biocomputing 2019, 2018. doi:10.1142/9789813279827_0007.

Jiang, Yuexu, Duolin Wang, Dong Xu, and Trupti Joshi. “Integrating Gene Expression Data and Pathway Knowledge for In Silico Hypothesis Generation with IMPRes.” 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), 2018. doi:10.1109/bibm.2018.8621465.

Keasar, Chen, Liam J. Mcguffin, Björn Wallner, Gaurav Chopra, Badri Adhikari, Debswapna Bhattacharya, Lauren Blake, Leandro Oliveira Bortot, Renzhi Cao, B. K. Dhanasekaran, Itzhel Dimas, Rodrigo Antonio Faccioli, Eshel Faraggi, Robert Ganzynkowicz, Sambit Ghosh, Soma Ghosh, Artur Giełdoń, Lukasz Golon, Yi He, Lim Heo, Jie Hou, Main Khan, Firas Khatib, George A. Khoury, Chris Kieslich, David E. Kim, Pawel Krupa, Gyu Rie Lee, Hongbo Li, Jilong Li, Agnieszka Lipska, Adam Liwo, Ali Hassan A. Maghrabi, Milot Mirdita, Shokoufeh Mirzaei, Magdalena A. Mozolewska, Melis Onel, Sergey Ovchinnikov, Anand Shah, Utkarsh Shah, Tomer Sidi, Adam K. Sieradzan, Magdalena Ślusarz, Rafal Ślusarz, James Smadbeck, Phanourios Tamamis, Nicholas Trieber, Tomasz Wirecki, Yanping Yin, Yang Zhang, Jaume Bacardit, Maciej Baranowski, Nicholas Chapman, Seth Cooper, Alexandre Defelicibus, Jeff Flatten, Brian Koepnick, Zoran Popović, Bartlomiej Zaborowski, David Baker, Jianlin Cheng, Cezary Czaplewski, Alexandre Cláudio Botazzo Delbem, Christodoulos Floudas, Andrzej Kloczkowski, Stanislaw Ołdziej, Michael Levitt, Harold Scheraga, Chaok Seok, Johannes Söding, Saraswathi Vishveshwara, Dong Xu, and Silvia N. Crivelli. “An Analysis and Evaluation of the WeFold Collaborative for Protein Structure Prediction and Its Pipelines in CASP11 and CASP12.” Scientific Reports. 8, no. 1 (2018). doi:10.1038/s41598-018-26812-8.

Khan, Saad M., Jason E. Denney, Michael X. Wang, and Dong Xu. “Whole-exome Sequencing and MicroRNA Profiling Reveal PI3K/AKT Pathway’s Involvement in Juvenile Myelomonocytic Leukemia.” Quantitative Biology. 6, no. 1 (2018): 85-97. doi:10.1007/s40484-017-0125-2.

La, Thang, Edward Large, Earl Taliercio, Qijian Song, Jason D. Gillman, Dong Xu, Henry T. Nguyen, Grover Shannon, and Andrew Scaboo. “Characterization of Select Wild Soybean Accessions in the USDA Germplasm Collection for Seed Composition and Agronomic Traits.” Crop Science. 59, no. 1 (2019): 233. doi:10.2135/cropsci2017.08.0514.

Li, Dan, William Yang, Yifan Zhang, Jack Y. Yang, Renchu Guan, Dong Xu, and Mary Qu Yang. “Genomic Analyses Based on Pulmonary Adenocarcinoma in Situ Reveal Early Lung Cancer Signature.” BMC Medical Genomics. 11, no. S5 (2018). doi:10.1186/s12920-018-0413-3.

Liu, Ye, Zhengfei Yu, Jingxuan Zhu, Song Wang, Dong Xu, and Weiwei Han. “Why Is a High Temperature Needed by Thermus Thermophilus Argonaute During MRNA Silencing: A Theoretical Study.” Frontiers in Chemistry. 6 (2018). doi:10.3389/fchem.2018.00223.

Rao, R. Shyama Prasad, Ning Zhang, Dong Xu, and Ian Max Møller. “CarbonylDB: A Curated Data-resource of Protein Carbonylation Sites.” Bioinformatics. 34, no. 14 (2018): 2518-520. doi:10.1093/bioinformatics/bty123.

Wang, Donghui, Yanchun Liang, Dong Xu, Xiaoyue Feng, and Renchu Guan. “A Content-based Recommender System for Computer Science Publications.” Knowledge-Based Systems. 157 (2018): 1-9. doi:10.1016/j.knosys.2018.05.001.

Wang, Duolin, Yanchun Liang, and Dong Xu. “Capsule Network for Protein Post-translational Modification Site Prediction.” Bioinformatics, 2018. doi:10.1093/bioinformatics/bty977.

Wang, Juexin, Robert Sheridan, S. Onur Sumer, Nikolaus Schultz, Dong Xu, and Jianjiong Gao. “G2S: A Web-service for Annotating Genomic Variants on 3D Protein Structures.” Bioinformatics. 34, no. 11 (2018): 1949-950. doi:10.1093/bioinformatics/bty047.

Wang, Wenbo, Junlin Wang, Dong Xu, and Yi Shang. “Two New Heuristic Methods for Protein Model Quality Assessment.” IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2018, 1. doi:10.1109/tcbb.2018.2880202.

Wu, Yun, Zhiquan He, Hao Lin, Yufei Zheng, Jingfen Zhang, and Dong Xu. “A Fast Projection-Based Algorithm for Clustering Big Data.” Interdisciplinary Sciences: Computational Life Sciences, 2018. doi:10.1007/s12539-018-0294-3.

Zeng, Shuai, Zhen Lyu, Siva Ratna Kumari Narisetti, Dong Xu, and Trupti Joshi. “Knowledge Base Commons (KBCommons) V1.0: A Multi OMICS Web-based Data Integration Framework for Biological Discoveries.” 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), 2018. doi:10.1109/bibm.2018.8621369.

Zhang, Ning, R. S. P. Rao, Fernanda Salvato, Jesper F. Havelund, Ian M. Møller, Jay J. Thelen, and Dong Xu. “MU-LOC: A Machine-Learning Method for Predicting Mitochondrially Localized Proteins in Plants.” Frontiers in Plant Science. 9 (2018). doi:10.3389/fpls.2018.00634.

Zhao, Qi, Yuanning Liu, Ning Zhang, Menghan Hu, Hao Zhang, Trupti Joshi, and Dong Xu. “Evidence for Plant-derived XenomiRs Based on a Large-scale Analysis of Public Small RNA Sequencing Data from Human Samples.” Plos One. 13, no. 6 (2018). doi:10.1371/journal.pone.0187519.

Shuqun Zhang
Han, Xiaofei, Sen Li, Miao Zhang, Liuyi Yang, Yidong Liu, Juan Xu, and Shuqun Zhang. “Regulation of GDSL Lipase Gene Expression by MPK3/MPK6 Cascade and Its Downstream WRKY Transcription Factor(s) in Arabidopsis Immunity.” Molecular Plant-Microbe Interactions, 2018. doi:10.1094/mpmi-06-18-0171-r.

Li, Sen, Xiaofei Han, Liuyi Yang, Xiangxiong Deng, Hongjiao Wu, Mengmeng Zhang, Yidong Liu, Shuqun Zhang, and Juan Xu. “Mitogen-activated Protein Kinases and Calcium-dependent Protein Kinases Are Involved in Wounding-induced Ethylene Biosynthesis in Arabidopsis Thaliana.” Plant, Cell & Environment. 41, no. 1 (2017): 134-47. doi:10.1111/pce.12984.

Su, Jianbin, Liuyi Yang, Qiankun Zhu, Hongjiao Wu, Yi He, Yidong Liu, Juan Xu, Dean Jiang, and Shuqun Zhang. “Active Photosynthetic Inhibition Mediated by MPK3/MPK6 Is Critical to Effector-triggered Immunity.” PLOS Biology. 16, no. 5 (2018). doi:10.1371/journal.pbio.2004122.

Zaman, Najia, Kati Seitz, Mohiuddin Kabir, Lauren St. George-Schreder, Ian Shepstone, Yidong Liu, Shuqun Zhang, and Patrick J. Krysan. “A Förster Resonance Energy Transfer Sensor for Live-cell Imaging of Mitogen-activated Protein Kinase Activity in Arabidopsis.” The Plant Journal. 97, no. 5 (2019): 970-83. doi:10.1111/tpj.14164.

Zhang, Mengmeng, Jianbin Su, Yan Zhang, Juan Xu, and Shuqun Zhang. “Conveying Endogenous and Exogenous Signals: MAPK Cascades in Plant Growth and Defense.” Current Opinion in Plant Biology. 45 (2018): 1-10. doi:10.1016/j.pbi.2018.04.012.

Zhang, Shuqun. “Mitogen-Activated Protein Kinase Cascades in Plant Intracellular Signaling.” Intracellular Signaling in Plants: 100-36. doi:10.1002/9781444302387.ch4.

Zheng, Yueping, Xiangxiong Deng, Aili Qu, Mengmeng Zhang, Yuan Tao, Liuyi Yang, Yidong Liu, Juan Xu, and Shuqun Zhang. “Regulation of Pollen Lipid Body Biogenesis by MAP Kinases and Downstream WRKY Transcription Factors in Arabidopsis.” PLOS Genetics. 14, no. 12 (2018). doi:10.1371/journal.pgen.1007880.

Wes Warren
Attardo, Geoffrey Michael, Adly M.m. Abd-Alla, Alvaro Acosta-Serrano, James E. Allen, Rosemary Bateta, Joshua Benoit, Kostas Bourtzis, Jelle Caers, Guy Caljon, Mikkel B. Christensen, David W. Farrow, Markus Friedrich, Aurélie Hua-Van, Emily C. Jennings, Denis M. Larkin, Daniel Lawson, Michael J. Lehane, Vasileios P. Lenis, Ernesto Lowy-Gallego, Rosaline W. Macharia, Anna R. Malacrida, Heather G. Marco, Daniel Masiga, Gareth L. Maslen, Irina Matetovici, Richard P. Meisel, Irene Meki, Veronika Michalkova, Wolfgang J. Miller, Patrick Minx, Paul O. Mireji, Lino Ometto, Andrew G. Parker, Rita Rio, Clair Rose, Andrew J. Rosendale, Omar Rota Stabelli, Grazia Savini, Liliane Schoofs, Francesca Scolari, Martin T. Swain, Peter Takáč, Chad Tomlinson, George Tsiamis, Jan Van Den Abbeele, Aurélien Vigneron, Jingwen Wang, Wesley C. Warren, Robert M. Waterhouse, Matthew T. Weirauch, Brian L. Weiss, Richard K. Wilson, Xin Zhao, and Serap Aksoy. “The Glossina Genome Cluster: Comparative Genomic Analysis of the Vectors of African Trypanosomes.” 2019. doi:10.1101/531749.

Audano, Peter A., Arvis Sulovari, Tina A. Graves-Lindsay, Stuart Cantsilieris, Melanie Sorensen, Annemarie E. Welch, Max L. Dougherty, Bradley J. Nelson, Ankeeta Shah, Susan K. Dutcher, Wesley C. Warren, Vincent Magrini, Sean D. Mcgrath, Yang I. Li, Richard K. Wilson, and Evan E. Eichler. “Characterizing the Major Structural Variant Alleles of the Human Genome.” Cell. 176, no. 3 (2019). doi:10.1016/j.cell.2018.12.019.

Farré, Marta, Jaebum Kim, Anastasia A. Proskuryakova, Yang Zhang, Anastasia I. Kulemzina, Qiye Li, Yang Zhou, Yingqi Xiong, Jennifer L. Johnson, Polina Perelman, Warren E. Johnson, Wesley C. Warren, Anna V. Kukekova, Guojie Zhang, Stephen J. Obrien, Oliver A. Ryder, Alexander S. Graphodatsky, Jian Ma, Harris A. Lewin, and Denis M. Larkin. “Evolution of Gene Regulation in Ruminants Differs between Evolutionary Breakpoint Regions and Homologous Synteny Blocks.” Genome Research, 2019. doi:10.1101/gr.239863.118.

Franchini, Paolo, Julia C. Jones, Peiwen Xiong, Susanne Kneitz, Zachariah Gompert, Wesley C. Warren, Ronald B. Walter, Axel Meyer, and Manfred Schartl. “Long-term Experimental Hybridisation Results in the Evolution of a New Sex Chromosome in Swordtail Fish.” Nature Communications. 9, no. 1 (2018). doi:10.1038/s41467-018-07648-2.

Gandolfi, Barbara, Hasan Alhaddad, Mona Abdi, Leslie H. Bach, Erica K. Creighton, Brian W. Davis, Jared E. Decker, Nicholas H. Dodman, Jennifer C. Grahn, Robert A. Grahn, Bianca Haase, Jens Haggstrom, Michael J. Hamilton, Christopher R. Helps, Jennifer D. Kurushima, Hannes Lohi, Maria Longeri, Richard Malik, Kathryn M. Meurs, Michael J. Montague, James C. Mullikin, William J. Murphy, Sara M. Nilson, Niels C. Pedersen, Carlyn B. Peterson, Clare Rusbridge, Rashid Saif, G. Diane Shelton, Wesley C. Warren, Muhammad Wasim, and Leslie A. Lyons. “Author Correction: Applications and Efficiencies of the First Cat 63K DNA Array.” Scientific Reports. 8, no. 1 (2018). doi:10.1038/s41598-018-26885-5.

Gandolfi, Barbara, Hasan Alhaddad, Mona Abdi, Leslie H. Bach, Erica K. Creighton, Brian W. Davis, Jared E. Decker, Nicholas H. Dodman, Edward I. Ginns, Jennifer C. Grahn, Robert A. Grahn, Bianca Haase, Jens Haggstrom, Michael J. Hamilton, Christopher R. Helps, Jennifer D. Kurushima, Hannes Lohi, Maria Longeri, Richard Malik, Kathryn M. Meurs, Michael J. Montague, James C. Mullikin, William J. Murphy, Sara M. Nilson, Niels C. Pedersen, Carlyn B. Peterson, Clare Rusbridge, Rashid Saif, G. Diane Shelton, Wesley C. Warren, Muhammad Wasim, and Leslie A. Lyons. “Author Correction: Applications and Efficiencies of the First Cat 63 K DNA Array.” Scientific Reports. 9, no. 1 (2019). doi:10.1038/s41598-018-38073-6.

Guselnikov, Sergey V., Konstantin O. Baranov, Alexander M. Najakshin, Ludmila V. Mechetina, Nikolai A. Chikaev, Alexey I. Makunin, Sergey V. Kulemzin, Daria A. Andreyushkova, Matthias Stöck, Sven Wuertz, Jörn Gessner, Wesley C. Warren, Manfred Schartl, Vladimir A. Trifonov, and Alexander V. Taranin. “Diversity of Immunoglobulin Light Chain Genes in Non-Teleost Ray-Finned Fish Uncovers IgL Subdivision into Five Ancient Isotypes.” Frontiers in Immunology. 9 (2018). doi:10.3389/fimmu.2018.01079.

Herman, Adam, Yaniv Brandvain, James Weagley, William R. Jeffery, Alex C. Keene, Thomas J. Y. Kono, Helena Bilandžija, Richard Borowsky, Luis Espinasa, Kelly Oquin, Claudia P. Ornelas-García, Masato Yoshizawa, Brian Carlson, Ernesto Maldonado, Joshua B. Gross, Reed A. Cartwright, Nicolas Rohner, Wesley C. Warren, and Suzanne E. Mcgaugh. “The Role of Gene Flow in Rapid and Repeated Evolution of Cave-related Traits in Mexican Tetra, Astyanax Mexicanus.” Molecular Ecology. 27, no. 22 (2018): 4397-416. doi:10.1111/mec.14877.

Holt, Carson, Michael Campbell, David Keays, Nathaniel Edelman, Aurelie Kapusta, Emily Maclary, Eric Domyan, Alexander Suh, Wesley Warren, Mark Yandell, Thomas Gilbert, and Michael D. Shapiro. “Improved Genome Assembly and Annotation for the Rock Pigeon (Columba Livia).” 2017. doi:10.1101/220947.

Huddleston, John, Mark J.p. Chaisson, Karyn Meltz Steinberg, Wes Warren, Kendra Hoekzema, David Gordon, Tina A. Graves-Lindsay, Katherine M. Munson, Zev N. Kronenberg, Laura Vives, Paul Peluso, Matthew Boitano, Chen-Shin Chin, Jonas Korlach, Richard K. Wilson, and Evan E. Eichler. “Corrigendum: Discovery and Genotyping of Structural Variation from Long-read Haploid Genome Sequence Data.” Genome Research. 28, no. 1 (2018): 144. doi:10.1101/gr.233007.117.

Kim, Bo-Mi, Angel Amores, Seunghyun Kang, Do-Hwan Ahn, Jin-Hyoung Kim, Il-Chan Kim, Jun Hyuck Lee, Sung Gu Lee, Hyoungseok Lee, Jungeun Lee, Han-Woo Kim, Thomas Desvignes, Peter Batzel, Jason Sydes, Tom Titus, Catherine A. Wilson, Julian M. Catchen, Wesley C. Warren, Manfred Schartl, H. William Detrich, John H. Postlethwait, and Hyun Park. “Antarctic Blackfin Icefish Genome Reveals Adaptations to Extreme Environments.” Nature Ecology & Evolution. 3, no. 3 (2019): 469-78. doi:10.1038/s41559-019-0812-7.

Klotz, Barbara, Susanne Kneitz, Martina Regensburger, Lena Hahn, Michael Dannemann, Janet Kelso, Birgit Nickel, Yuan Lu, William Boswell, John Postlethwait, Wesley Warren, Manfred Kunz, Ronald B. Walter, and Manfred Schartl. “Expression Signatures of Early-stage and Advanced Medaka Melanomas.” Comparative Biochemistry and Physiology Part C: Toxicology & Pharmacology. 208 (2018): 20-28. doi:10.1016/j.cbpc.2017.11.005.

Lu, Yuan, Mikki Boswell, William Boswell, Susanne Kneitz, Michael Hausmann, Barbara Klotz, Janine Regneri, Markita Savage, Angel Amores, John Postlethwait, Wesley Warren, Manfred Schartl, and Ronald Walter. “Comparison of Xiphophorus and Human Melanoma Transcriptomes Reveals Conserved Pathway Interactions.” Pigment Cell & Melanoma Research. 31, no. 4 (2018): 496-508. doi:10.1111/pcmr.12686.

Lu, Yuan, Mikki Boswell, William Boswell, Susanne Kneitz, Barbara Klotz, Markita Savage, Raquel Salinas, Rebecca Marks, Janine Regneri, John Postlethwait, Wesley C. Warren, Manfred Schartl, and Ronald Walter. “Gene Expression Variation and Parental Allele Inheritance in a Xiphophorus Interspecies Hybridization Model.” PLOS Genetics. 14, no. 12 (2018). doi:10.1371/journal.pgen.1007875.

Lu, Yuan, William Boswell, Mikki Boswell, Barbara Klotz, Susanne Kneitz, Janine Regneri, Markita Savage, Cristina Mendoza, John Postlethwait, Wesley C. Warren, Manfred Schartl, and Ronald B. Walter. “Application of the Transcriptional Disease Signature (TDSs) to Screen Melanoma-Effective Compounds in a Small Fish Model.” Scientific Reports. 9, no. 1 (2019). doi:10.1038/s41598-018-36656-x.

Morris, Katrina M., Matthew M. Hindle, Simon Boitard, David W. Burt, Angela F. Danner, Lel Eory, Heather L. Forrest, David Gourichon, Jerome Gros, Ladeana Hillier, Thierry Jaffredo, Hanane Khoury, Rusty Lansford, Christine Leterrier, Andrew Loudon, Andrew S. Mason, Simone L. Meddle, Francis Minvielle, Patrick Minx, Frédérique Pitel, J. Patrick Seiler, Tsuyoshi Shimmura, Chad Tomlinson, Alain Vignal, Robert G. Webster, Takashi Yoshimura, Wesley C. Warren, and Jacqueline Smith. “The Quail as an Avian Model System: Its Genome Provides Insights into Social Behaviour, Seasonal Biology and Infectious Disease Response.” 2019. doi:10.1101/575332.

Oh, Annie, Jacqueline W. Pearce, Barbara Gandolfi, Erica K. Creighton, William K. Suedmeyer, Michael Selig, Ann P. Bosiack, Leilani J. Castaner, Rebecca E. H. Whiting, Ellen B. Belknap, Leslie A. Lyons, Danielle Aderdein, Paulo C. Alves, Gregory S. Barsh, Holly C. Beale, Adam R. Boyko, Marta G. Castelhano, Patricia Chan, N. Matthew Ellinwood, Dorian J. Garrick, Christopher R. Helps, Christopher B. Kaelin, Tosso Leeb, Hannes Lohi, Maria Longeri, Richard Malik, Michael J. Montague, John S. Munday, William J. Murphy, Niels C. Pedersen, Max F. Rothschild, William F. Swanson, Karen A. Terio, Rory J. Todhunter, and Wesley C. Warren. “Corrigendum: Early-Onset Progressive Retinal Atrophy Associated with an IQCB1 Variant in African Black-Footed Cats (Felis Nigripes).” Scientific Reports. 8 (2018): 46978. doi:10.1038/srep46978.

Perry, Blair W., Daren C. Card, Joel W. Mcglothlin, Giulia I M Pasquesi, Richard H. Adams, Drew R. Schield, Nicole R. Hales, Andrew B. Corbin, Jeffery P. Demuth, Federico G. Hoffmann, Michael W. Vandewege, Ryan K. Schott, Nihar Bhattacharyya, Belinda S W Chang, Nicholas R. Casewell, Gareth Whiteley, Jacobo Reyes-Velasco, Stephen P. Mackessy, Tony Gamble, Kenneth B. Storey, Kyle K. Biggar, Courtney N. Passow, Chih-Horng Kuo, Suzanne E. Mcgaugh, Anne M. Bronikowski, A. P Jason De Koning, Scott V. Edwards, Michael E. Pfrender, Patrick Minx, Edmund D. Brodie, Edmund D. Brodie, Wesley C. Warren, and Todd A. Castoe. “Molecular Adaptations for Sensing and Securing Prey and Insight into Amniote Genome Diversity from the Garter Snake Genome.” Genome Biology and Evolution. 10, no. 8 (2018): 2110-129. doi:10.1093/gbe/evy157.

Svardal, Hannes, Anna J. Jasinska, Cristian Apetrei, Giovanni Coppola, Yu Huang, Christopher A. Schmitt, Beatrice Jacquelin, Vasily Ramensky, Michaela Müller-Trutwin, Martin Antonio, George Weinstock, J. Paul Grobler, Ken Dewar, Richard K. Wilson, Trudy R. Turner, Wesley C. Warren, Nelson B. Freimer, and Magnus Nordborg. “Publisher Correction: Ancient Hybridization and Strong Adaptation to Viruses across African Vervet Monkey Populations.” Nature Genetics. 50, no. 11 (2018): 1617. doi:10.1038/s41588-018-0124-x.

Wagner, Josiah T., Param Priya Singh, Amie L. Romney, Claire L. Riggs, Patrick Minx, Steven C. Woll, Jake Roush, Wesley C. Warren, Anne Brunet, and Jason E. Podrabsky. “The Genome of Austrofundulus Limnaeus Offers Insights into Extreme Vertebrate Stress Tolerance and Embryonic Development.” BMC Genomics. 19, no. 1 (2018). doi:10.1186/s12864-018-4539-7.

Warren, Wesley C., Lukas Kuderna, Alana Alexander, Julian Catchen, José G. Pérez-Silva, Carlos López-Otín, Víctor Quesada, Patrick Minx, Chad Tomlinson, Michael J. Montague, Fabiana H G Farias, Ronald B. Walter, Tomas Marques-Bonet, Travis Glenn, Troy J. Kieran, Sandra S. Wise, John Pierce Wise, Robert M. Waterhouse, and John Pierce Wise. “The Novel Evolution of the Sperm Whale Genome.” Genome Biology and Evolution. 9, no. 12 (2017): 3260-264. doi:10.1093/gbe/evx187.

Warren, Wesley C., Raquel García-Pérez, Sen Xu, Kathrin P. Lampert, Domitille Chalopin, Matthias Stöck, Laurence Loewe, Yuan Lu, Lukas Kuderna, Patrick Minx, Michael J. Montague, Chad Tomlinson, Ladeana W. Hillier, Daniel N. Murphy, John Wang, Zhongwei Wang, Constantino Macias Garcia, Gregg C. W. Thomas, Jean-Nicolas Volff, Fabiana Farias, Bronwen Aken, Ronald B. Walter, Kim D. Pruitt, Tomas Marques-Bonet, Matthew W. Hahn, Susanne Kneitz, Michael Lynch, and Manfred Schartl. “Clonal Polymorphism and High Heterozygosity in the Celibate Genome of the Amazon Molly.” Nature Ecology & Evolution. 2, no. 4 (2018): 669-79. doi:10.1038/s41559-018-0473-y.

Ron Mittler
Choudhury, Feroza K., Amith R. Devireddy, Rajeev K. Azad, Vladimir Shulaev, and Ron Mittler. “Rapid Accumulation of Glutathione During Light Stress in Arabidopsis.” Plant and Cell Physiology. 59, no. 9 (2018): 1817-826. doi:10.1093/pcp/pcy101.

Choudhury, Feroza K., Amith R. Devireddy, Rajeev K. Azad, Vladimir Shulaev, and Ron Mittler. “Local and Systemic Metabolic Responses during Light-Induced Rapid Systemic Signaling.” Plant Physiology. 178, no. 4 (2018): 1461-472. doi:10.1104/pp.18.01031.

Devireddy, Amith R., Sara I. Zandalinas, Aurelio Gómez-Cadenas, Eduardo Blumwald, and Ron Mittler. “Coordinating the Overall Stomatal Response of Plants: Rapid Leaf-to-leaf Communication during Light Stress.” Science Signaling. 11, no. 518 (2018). doi:10.1126/scisignal.aam9514.

Iosub-Amir, Anat, Fang Bai, Yang-Sung Sohn, Luhua Song, Sagi Tamir, Henri-Baptiste Marjault, Guy Mayer, Ola Karmi, Patricia A. Jennings, Ron Mittler, José N. Onuchic, Assaf Friedler, and Rachel Nechushtai. “The Anti-apoptotic Proteins NAF-1 and IASPP Interact to Drive Apoptosis in Cancer Cells.” Chemical Science. 10, no. 3 (2019): 665-73. doi:10.1039/c8sc03390k.

Karmi, Ola, Henri-Baptiste Marjault, Luca Pesce, Paolo Carloni, Jose’ N. Onuchic, Patricia A. Jennings, Ron Mittler, and Rachel Nechushtai. “The Unique Fold and Lability of the [2Fe-2S] Clusters of NEET Proteins Mediate Their Key Functions in Health and Disease.” JBIC Journal of Biological Inorganic Chemistry. 23, no. 4 (2018): 599-612. doi:10.1007/s00775-018-1538-8.

King, Skylar D., Chipo F. Gray, Luhua Song, Rachel Nechushtai, Tina L. Gumienny, Ron Mittler, and Pamela A. Padilla. “The Cisd Gene Family Regulates Physiological Germline Apoptosis through Ced-13 and the Canonical Cell Death Pathway in Caenorhabditis Elegans.” Cell Death & Differentiation. 26, no. 1 (2018): 162-78. doi:10.1038/s41418-018-0108-5.

Kollist, Hannes, Sara I. Zandalinas, Soham Sengupta, Maris Nuhkat, Jaakko Kangasjärvi, and Ron Mittler. “Rapid Responses to Abiotic Stress: Priming the Landscape for the Signal Transduction Network.” Trends in Plant Science. 24, no. 1 (2019): 25-37. doi:10.1016/j.tplants.2018.10.003.

Lipper, Colin H., Ola Karmi, Yang Sung Sohn, Merav Darash-Yahana, Heiko Lammert, Luhua Song, Amy Liu, Ron Mittler, Rachel Nechushtai, José N. Onuchic, and Patricia A. Jennings. “Structure of the Human Monomeric NEET Protein MiNT and Its Role in Regulating Iron and Reactive Oxygen Species in Cancer Cells.” Proceedings of the National Academy of Sciences. 115, no. 2 (2017): 272-77. doi:10.1073/pnas.1715842115.

Martinez, Vicente, Manuel Nieves-Cordones, Maria Lopez-Delacalle, Reyes Rodenas, Teresa Mestre, Francisco Garcia-Sanchez, Francisco Rubio, Pedro Nortes, Ron Mittler, and Rosa Rivero. “Tolerance to Stress Combination in Tomato Plants: New Insights in the Protective Role of Melatonin.” Molecules. 23, no. 3 (2018): 535. doi:10.3390/molecules23030535.

Miller, Gad, Jesse Coutu, Vladimir Shulaev, and Ron Mittler. “Reactive Oxygen Signaling in Plants.” Intracellular Signaling in Plants, February 15, 2018, 189-201. doi:10.1111/b.9781405160025.2008.00007.x.

Mittler, Ron, Merav Darash-Yahana, Yang Sung Sohn, Fang Bai, Luhua Song, Ioav Z. Cabantchik, Patricia A. Jennings, José N. Onuchic, and Rachel Nechushtai. “NEET Proteins: A New Link Between Iron Metabolism, Reactive Oxygen Species, and Cancer.” Antioxidants & Redox Signaling. 30, no. 8 (2019): 1083-095. doi:10.1089/ars.2018.7502.

Rivero, RM, MJ Oliver, and R. Mittler. “Author Information:(1) CEBAS-CSIC, Department of Plant Nutrition, Campus Universitario Espinardo, 30100, Murcia, Spain.(2) USDA-ARS-MWA, Plant Genetics Research Unit ….” Physiol Plant. 165, no. 2, 125-27.

Sengupta, Soham, Rachel Nechushtai, Patricia A. Jennings, Jose’ N. Onuchic, Pamela A. Padilla, Rajeev K. Azad, and Ron Mittler. “Phylogenetic Analysis of the CDGSH Iron-sulfur Binding Domain Reveals Its Ancient Origin.” Scientific Reports. 8, no. 1 (2018). doi:10.1038/s41598-018-23305-6.

Zandalinas, Sara I., Ron Mittler, Damián Balfagón, Vicent Arbona, and Aurelio Gómez-Cadenas. “Plant Adaptations to the Combination of Drought and High Temperatures.” Physiologia Plantarum. 162, no. 1 (January 2018): 2-12. doi:10.1111/ppl.12540.

Zandalinas, Sara I., and Ron Mittler. “ROS-induced ROS Release in Plant and Animal Cells.” Free Radical Biology and Medicine. 122 (2018): 21-27. doi:10.1016/j.freeradbiomed.2017.11.028.

Zandalinas, Sara I., Soham Sengupta, David Burks, Rajeev K. Azad, and Ron Mittler. “Identification and Characterization of a Core Set of ROS Wave‐associated Transcripts Involved in the Systemic Acquired Acclimation Response of Arabidopsis to Excess Light.” The Plant Journal, 2018. doi:10.1111/tpj.14205

Bing Yang
Bezrutczyk, Margaret, Jungil Yang, Joon-Seob Eom, Matthew Prior, Davide Sosso, Thomas Hartwig, Boris Szurek, Ricardo Oliva, Casiana Vera-Cruz, Frank F. White, Bing Yang, and Wolf B. Frommer. “Sugar Flux and Signaling in Plant-microbe Interactions.” The Plant Journal. 93, no. 4 (February 2018): 675-85. doi:10.1111/tpj.13775.

Bezrutczyk, Margaret, Thomas Hartwig, Marc Horschman, Si Nian Char, Jinliang Yang, Bing Yang, Wolf B. Frommer, and Davide Sosso. “Impaired Phloem Loading in Zmsweet13a,b,c Sucrose Transporter Triple Knock-out Mutants in Zea Mays.” New Phytologist. 218, no. 2 (April 2018): 594-603. doi:10.1111/nph.15021.

Khanday, Imtiyaz, Debra Skinner, Bing Yang, Raphael Mercier, and Venkatesan Sundaresan. “A Male-expressed Rice Embryogenic Trigger Redirected for Asexual Propagation through Seeds.” Nature. 565, no. 7737 (January 2019): 91-95. doi:10.1038/s41586-018-0785-8.

Lee, Keunsub, Huilan Zhu, Bing Yang, and Kan Wang. “An Agrobacterium-Mediated CRISPR/Cas9 Platform for Genome Editing in Maize.” Methods in Molecular Biology Plant Genome Editing with CRISPR Systems, 2019, 121-43. doi:10.1007/978-1-4939-8991-1_10.

Li, Riqing, Si Nian Char, and Bing Yang. “Creating Large Chromosomal Deletions in Rice Using CRISPR/Cas9.” Methods in Molecular Biology Plant Genome Editing with CRISPR Systems, 2019, 47-61. doi:10.1007/978-1-4939-8991-1_4.

Liu, Yang, Paul Merrick, Zhengzhi Zhang, Chonghui Ji, Bing Yang, and Shui-Zhang Fei. “Targeted Mutagenesis in Tetraploid Switchgrass (Panicum Virgatum L.) Using CRISPR/Cas9.” Plant Biotechnology Journal. 16, no. 2 (February 2018): 381-93. doi:10.1111/pbi.12778.

Long, Juying, Congfeng Song, Fang Yan, Junhui Zhou, Huanbin Zhou, and Bing Yang. “Non-TAL Effectors From Xanthomonas Oryzae Pv. Oryzae Suppress Peptidoglycan-Triggered MAPK Activation in Rice.” Frontiers in Plant Science. 9 (2018). doi:10.3389/fpls.2018.01857.

Lu, Xuan, Juan Zhang, Benjamin Brown, Riqing Li, Julio Rodríguez-Romero, Aileen Berasategui, Bo Liu, Meimei Xu, Dangping Luo, Zhiqiang Pan, Scott R. Baerson, Jonathan Gershenzon, Zhaohu Li, Ane Sesma, Bing Yang, and Reuben J. Peters. “Inferring Roles in Defense from Metabolic Allocation of Rice Diterpenoids.” The Plant Cell. 30, no. 5 (May 1, 2018): 1119-131. doi:10.1105/tpc.18.00205.

Shan, Shengchen, Evgeny V. Mavrodiev, Riqing Li, Zhengzhi Zhang, Bernard A. Hauser, Pamela S. Soltis, Douglas E. Soltis, and Bing Yang. “Application of CRISPR/Cas9 to Tragopogon (Asteraceae), an Evolutionary Model for the Study of Polyploidy.” Molecular Ecology Resources. 18, no. 6 (November 2018): 1427-443. doi:10.1111/1755-0998.12935.

Yang, Jungil, Dangping Luo, Bing Yang, Wolf B. Frommer, and Joon-Seob Eom. “SWEET11 and 15 as Key Players in Seed Filling in Rice.” New Phytologist. 218, no. 2 (2018): 604-15. doi:10.1111/nph.15004.

Zhang, Zhengzhi, Lei Hua, Ajay Gupta, David Tricoli, Keith J. Edwards, Bing Yang, and Wanlong Li. “Development of an Agrobacterium-delivered CRISPR/Cas9 System for Wheat Genome Editing.” Plant Biotechnology Journal, 2019. doi:10.1111/pbi.13088.