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Publications

2022

Defining biological and biophysical properties of SARS-CoV-2 genetic material in wastewater. Robinson CA, Hsieh H-Y, Hsu S-Y, Wang Y, Salcedo BT, Belenchia A, Klutts J, Zemmer S, Reynolds M, Semkiw E, Foley T, Wan X, Wieberg CG, Wenzel J, Lin C-H, Johnson MC. Science of the Total Environment; 807:150786.

Date published: February 10, 2022
Featured in this article: Yang Wang, XiuFeng “Henry” Wan, Marc Johnson.

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2021

Structure of the mature Rous sarcoma virus lattice reveals a role for IP6 in the formation of the capsid hexamer. Obr M, Ricana CL, Nikulin N, Feathers J-PR, Klanschnig M, Thader A, Johnson MC, Vogt VM, Schur FKM, Dick RA. Nature Communications; 12(1):3226.

Date published: December 1, 2021
Featured in this article: Marc Johnson.

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Genetic variation among 481 diverse soybean accessions, inferred from genomic re-sequencing. Valliyodan B, Brown AV, Wang J, Patil G, Liu Y, Otyama PI, Nelson RT, Vuong T, Song Q, Musket TA, Wagner R, Marri P, Reddy S, Sessions A, Wu X, Grant D, Bayer PE, Roorkiwal M, Varshney RK, Liu X, Edwards D, Xu D, Joshi T, Cannon SB, Nguyen HT. Scientific Data; 8(1):50.

Date published: December 1, 2021
Featured in this article: Juexin Wang, Dong Xu, Trupti Joshi.

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Developmental exposure to silver nanoparticles leads to long term gut dysbiosis and neurobehavioral alterations. Lyu Z, Ghoshdastidar S, Rekha KR, Suresh D, Mao J, Bivens N, Kannan R, Joshi T, Rosenfeld CS, Upendran A. Scientific Reports; 11(1):6558.

Date published: December 1, 2021
Featured in this article: Zhen Lyu, Jiude Mao, Nathan Bivens, Trupti Joshi.

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A mouse model of prenatal exposure to Interleukin-6 to study the developmental origin of health and disease. Srivastava T, Joshi T, Heruth DP, Rezaiekhaligh MH, Garola RE, Zhou J, Boinpelly VS, Ali MF, Alon US, Sharma M, Vanden Heuvel GB, Mahajan P, Priya L, Jiang Y, McCarthy ET, Savin VJ, Sharma R, Sharma M. Scientific Reports; 11(1):13260.

Date published: December 1, 2021
Featured in this article: Trupti Joshi, Yuexu Jiang.

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S-acylation of P2K1 mediates extracellular ATP-induced immune signaling in Arabidopsis. Chen D, Hao F, Mu H, Ahsan N, Thelen JJ, Stacey G. Nature Communications; 12(1):2750.

Date published: December 1, 2021
Featured in this article: Jay Thelen, Gary Stacey.

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Chromosome-scale genome assembly of the sea louse Caligus rogercresseyi by SMRT sequencing and Hi-C analysis. Gallardo-Escárate C, Valenzuela-Muñoz V, Nuñez-Acuña G, Valenzuela-Miranda D, Gonçalves AT, Escobar-Sepulveda H, Liachko I, Nelson B, Roberts S, Warren W. Scientific Data; 8(1):60.

Date published: December 1, 2021
Featured in this article: Wes Warren.

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A chromosome-level genome of Astyanax mexicanus surface fish for comparing population-specific genetic differences contributing to trait evolution. Warren WC, Boggs TE, Borowsky R, Carlson BM, Ferrufino E, Gross JB, Hillier LD, Hu Z, Keene AC, Kenzior A, Kowalko JE, Tomlinson C, Kremitzki M, Lemieux ME, Graves-Lindsay T, McGaugh SE, Miller JT, Mommersteeg MTM, Moran RL, Peuß R, Rice ES, Riddle MR, Sifuentes-Romero I, Stanhope BA, Tabin CJ, Thakur S, Yamamoto Y, Rohner N. Nature Communications; 12(1):1447.

Date published: December 1, 2021
Featured in this article: Wes Warren.

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The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control. Olafson PU, Aksoy S, Attardo GM, Buckmeier G, Chen X, Coates CJ, Davis M, Dykema J, Emrich SJ, Friedrich M, Holmes CJ, Ioannidis P, Jansen EN, Jennings EC, Lawson D, Martinson EO, Maslen GL, Meisel RP, Murphy TD, Nayduch D, Nelson DR, Oyen KJ, Raszick TJ, Ribeiro JMC, Robertson HM, Rosendale AJ, Sackton TB, Saelao P, Swiger SL, Sze S-H, Tarone AM, Taylor DB, Warren WC, Waterhouse RM, Weirauch MT, Werren JH, Wilson RK, Zdobnov EM, Benoit JB. BMC Biology; 19(1):41.

Date published: December 1, 2021
Featured in this article: Wes Warren.

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Publisher Correction: The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control (BMC Biology, (2021), 19, 1, (41), 10.1186/s12915-021-00975-9). Olafson PU, Aksoy S, Attardo GM, Buckmeier G, Chen X, Coates CJ, Davis M, Dykema J, Emrich SJ, Friedrich M, Holmes CJ, Ioannidis P, Jansen EN, Jennings EC, Lawson D, Martinson EO, Maslen GL, Meisel RP, Murphy TD, Nayduch D, Nelson DR, Oyen KJ, Raszick TJ, Ribeiro JMC, Robertson HM, Rosendale AJ, Sackton TB, Saelao P, Swiger SL, Sze S-H, Tarone AM, Taylor DB, Warren WC, Waterhouse RM, Weirauch MT, Werren JH, Wilson RK, Zdobnov EM, Benoit JB. BMC Biology; 19(1):150.

Date published: December 1, 2021
Featured in this article: Wes Warren.

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Chromosome-length genome assembly and structural variations of the primal Basenji dog (Canis lupus familiaris) genome. Edwards RJ, Field MA, Ferguson JM, Dudchenko O, Keilwagen J, Rosen BD, Johnson GS, Rice ES, Hillier LD, Hammond JM, Towarnicki SG, Omer A, Khan R, Skvortsova K, Bogdanovic O, Zammit RA, Aiden EL, Warren WC, Ballard JWO. BMC Genomics; 22(1):188.

Date published: December 1, 2021
Featured in this article: Wes Warren.

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A domestic cat whole exome sequencing resource for trait discovery. Rodney AR, Buckley RM, Fulton RS, Fronick C, Richmond T, Helps CR, Pantke P, Trent DJ, Vernau KM, Munday JS, Lewin AC, Middleton R, Lyons LA, Warren WC. Scientific Reports; 11(1):7159.

Date published: December 1, 2021
Featured in this article: Wes Warren.

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Multi-omic analyses in Abyssinian cats with primary renal amyloid deposits. Genova F, Nonnis S, Maffioli E, Tedeschi G, Strillacci MG, Carisetti M, Sironi G, Cupaioli FA, Di Nanni N, Mezzelani A, Mosca E, Helps CR, Leegwater PAJ, Dorso L, Buckley RM, Aberdein D, Alves PC, Andersson AO, Barsh GS, Bellone RR, Bergström TF, Boyko AR, Brockman JA, Casal ML, Castelhano MG, Distl O, Dodman NH, Ellinwood NM, Fogle JE, Forman OP, Garrick DJ, Ginns EI, Haase B, Häggström J, Harvey RJ, Hasegawa D, Hernandez I, Hytönen MK, Kaukonen M, Kaelin CB, Kosho T, Leclerc E, Lear TL, Leeb T, Li RHL, Lohi H, Magnuson MA, Malik R, Mane SP, Munday JS, Murphy WJ, Pedersen NC, Peterson-Jones SM, Rothschild MF, Rusbridge C, Shapiro B, Stern JA, Swanson WF, Terio KA, Todhunter RJ, Warren WC, Wilcox EA, Wildschutte JH, Yu Y, Lyons LA, Longeri M. Scientific Reports; 11(1):8339.

Date published: December 1, 2021
Featured in this article: Wes Warren.

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Complete vertebrate mitogenomes reveal widespread repeats and gene duplications. Formenti G, Rhie A, Balacco J, Haase B, Mountcastle J, Fedrigo O, Brown S, Capodiferro MR, Al-Ajli FO, Ambrosini R, Houde P, Koren S, Oliver K, Smith M, Skelton J, Betteridge E, Dolucan J, Corton C, Bista I, Torrance J, Tracey A, Wood J, Uliano-Silva M, Howe K, McCarthy S, Winkler S, Kwak W, Korlach J, Fungtammasan A, Fordham D, Costa V, Mayes S, Chiara M, Horner DS, Myers E, Durbin R, Achilli A, Braun EL, Phillippy AM, Jarvis ED, Kirschel ANG, Digby A, Veale A, Bronikowski A, Murphy B, Robertson B, Baker C, Mazzoni C, Balakrishnan C, Lee C, Mead D, Teeling E, Aiden EL, Todd E, Eichler E, Naylor GJP, Zhang G, Smith J, Wolf J, Touchon J, Delmore K, Jakobsen K, Komoroske L, Wilkinson M, Genner M, Pšenička M, Fuxjager M, Stratton M, Liedvogel M, Gemmell N, Minias P, Dunn PO, Sudmant P, Morin P, Ayub Q, Kraus R, Vernes S, Smith S, Lama T, Edwards T, Smith T, Gilbert T, Marques-Bonet T, Einfeldt T, Venkatesh B, Johnson W, Warren W, Bukhman Y. Genome Biology; 22(1):120.

Date published: December 1, 2021
Featured in this article: Wes Warren.

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New genotypes of Helicobacter Pylori VacA d-region identified from global strains. Soyfoo DM, Doomah YH, Xu D, Zhang C, Sang H-M, Liu Y-Y, Zhang G-X, Jiang J-X, Xu S-F. BMC Molecular and Cell Biology; 22(1):4.

Date published: December 1, 2021
Featured in this article: Dong Xu.

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DeePaN: deep patient graph convolutional network integrating clinico-genomic evidence to stratify lung cancers for immunotherapy. Fang C, Xu D, Su J, Dry JR, Linghu B. npj Digital Medicine; 4(1):14.

Date published: December 1, 2021
Featured in this article: Dong Xu.

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scGNN is a novel graph neural network framework for single-cell RNA-Seq analyses. Wang J, Ma A, Chang Y, Gong J, Jiang Y, Qi R, Wang C, Fu H, Ma Q, Xu D. Nature Communications; 12(1):1882.

Date published: December 1, 2021
Featured in this article: Juexin Wang, Dong Xu.

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Evolutionary analysis of the Delta and Delta Plus variants of the SARS-CoV-2 viruses. Kannan SR, Spratt AN, Cohen AR, Naqvi SH, Chand HS, Quinn TP, Lorson CL, Byrareddy SN, Singh K. Journal of Autoimmunity; 124:102715.

Date published: November 1, 2021
Featured in this article: Thomas Quinn, Christian Lorson, Kamlendra Singh.

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The impact of stress combination on reproductive processes in crops. Sinha R, Fritschi FB, Zandalinas SI, Mittler R. Plant Science; 311:111007.

Date published: October 1, 2021
Featured in this article: Ranjita Sinha, Ron Mittler.

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Reinfection with two genetically distinct SARS-CoV-2 viruses within 19 days. Tang CY, Wang Y, McElroy JA, Li T, Hammer R, Ritter D, Lidl GM, Webby R, Hang J, Wan X-F. Journal of Medical Virology; 93(10):5700-5703.

Date published: October 1, 2021
Featured in this article: Cynthia Tang, Yang Wang, XiuFeng “Henry” Wan.

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Cell-adapted mutations and antigenic diversity of influenza b viruses in Missouri, 2019–2020 season. Tang CY, Segovia K, McElroy JA, Li T, Guan M, Zhang X, Misra S, Hang J, Wan X-F. Viruses; 13(10):1896.

Date published: October 1, 2021
Featured in this article: Cynthia Tang, Minhui Guan, XiuFeng “Henry” Wan.

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Triple reassortment increases compatibility among viral ribonucleoprotein genes of contemporary avian and human influenza A viruses. Waters K, Gao C, Ykema M, Han L, Voth L, Tao YJ, Wan X-F. PLoS Pathogens; 17(10):e1009962.

Date published: October 1, 2021
Featured in this article: Cheng Gao, XiuFeng “Henry” Wan.

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Deep learning analysis and age prediction from shoeprints. Hassan M, Wang Y, Wang D, Li D, Liang Y, Zhou Y, Xu D. Forensic Science International; 327:110987.

Date published: October 1, 2021
Featured in this article: Dong Xu.

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Characterization of Subtype H6 Avian Influenza A Viruses Isolated From Wild Birds in Poyang Lake, China. Wan Z, Kan Q, Zhao Z, Shao H, Deliberto TJ, Wan X-F, Qin A, Ye J. Frontiers in Veterinary Science; 8:685399.

Date published: September 13, 2021
Featured in this article: XiuFeng “Henry” Wan.

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Recent Developments Toward Integrated Metabolomics Technologies (UHPLC-MS-SPE-NMR and MicroED) for Higher-Throughput Confident Metabolite Identifications. Ghosh R, Bu G, Nannenga BL, Sumner LW. Frontiers in Molecular Biosciences; 8:720955.

Date published: September 2, 2021
Featured in this article: Lloyd Sumner.

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Fecal metabolome signature in the HIV-1 elite control phenotype: Enrichment of dipeptides acts as an HIV-1 antagonist but a Prevotella agonist. Sperk M, Ambikan AT, Ray S, Singh K, Mikaeloff F, Diez RC, Narayanan A, Vesterbacka J, Nowak P, Sönnerborg A, Neogi U. Journal of Virology; 95(18):e00479-21.

Date published: September 1, 2021
Featured in this article: Kamlendra Singh.

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Bridging the gap between analytical and microbial sciences in microbiome research. Quinn RA, Hagiwara KA, Liu K, Goudarzi M, Pathmasiri W, Sumner LW, Metz TO. mSystems; 6(5):e00585-21.

Date published: September 1, 2021
Featured in this article: Lloyd Sumner.

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Genome assemblies across the diverse evolutionary spectrum of leishmania protozoan parasites. Warren WC, Akopyants NS, Dobson DE, Hertz-Fowler C, Lye L-F, Myler PJ, Ramasamy G, Shanmugasundram A, Silva-Franco F, Steinbiss S, Tomlinson C, Wilson RK, Beverley SM. Microbiology Resource Announcements; 10(35):e00545-21.

Date published: September 1, 2021
Featured in this article: Wes Warren.

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Erratum: The genomics of ecological flexibility, large brains, and long lives in capuchin monkeys revealed with fecalFACS (Proc. Natl. Acad. Sci. U.S.A. (2021) 118 (e2010632118) DOI: 10.1073/pnas.2010632118). Orkin JD, Montague MJ, Tejada-Martinez D, de Manuel M, del Campo J, Hernandez SC, Fiore AD, Fontsere C, Hodgson JA, Janiak MC, Kuderna LFK, Lizano E. Proceedings of the National Academy of Sciences of the United States of America; 118(34):e2112613118.

Date published: August 24, 2021
Featured in this article: Wes Warren.

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Therapeutic implications of SARS-CoV-2 dysregulation of the gut-brain-lung axis. Johnson SD, Olwenyi OA, Bhyravbhatla N, Thurman M, Pandey K, Klug EA, Johnston M, Dyavar SR, Acharya A, Podany AT, Fletcher CV, Mohan M, Singh K, Byrareddy SN. World Journal of Gastroenterology; 27(29):4763-4783.

Date published: August 7, 2021
Featured in this article: Kamlendra Singh.

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Primary metabolism: It’s more than what’s for dinner. Anderson JC, Peck SC. Molecular Plant; 14(8):1219-1220.

Date published: August 2, 2021
Featured in this article: Scott Peck.

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SPM Receptor Expression and Localization in Irradiated Salivary Glands. dos Santos HT, Nam K, Hunt JP, Buchmann LO, Monroe MM, Baker OJ. Journal of Histochemistry and Cytochemistry; 69(8):523-534.

Date published: August 1, 2021
Featured in this article: Harim Tavares dos Santos, Kihoon Nam, Olga Baker.

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Monitoring sars-cov-2 populations in wastewater by amplicon sequencing and using the novel program sam refiner. Gregory DA, Wieberg CG, Wenzel J, Lin C-H, Johnson MC. Viruses; 13(8):1647.

Date published: August 1, 2021
Featured in this article: Marc Johnson.

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Survival motor neuron deficiency slows myoblast fusion through reduced myomaker and myomixer expression. McCormack NM, Villalón E, Viollet C, Soltis AR, Dalgard CL, Lorson CL, Burnett BG. Journal of Cachexla, Sarcopenla and Muscle; 12(4):1098-1116.

Date published: August 1, 2021
Featured in this article: Christian Lorson.

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A combined drug treatment that reduces mitochondrial iron and reactive oxygen levels recovers insulin secretion in NAF-1-deficient pancreatic cells. Karmi O, Sohn Y-S, Marjault H-B, Israeli T, Leibowitz G, Ionnidis K, Nahmias Y, Mittler R, Cabantchik IZ, Nechushtai R. Antioxidants; 10(8):1160.

Date published: August 1, 2021
Featured in this article: Ron Mittler.

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Brassica rapa Domestication: Untangling Wild and Feral Forms and Convergence of Crop Morphotypes. McAlvay AC, Ragsdale AP, Mabry ME, Qi X, Bird KA, Velasco P, An H, Pires JC, Emshwiller E. Molecular Biology and Evolution; 38(8):3358-3372.

Date published: August 1, 2021
Featured in this article: Hong An, J. Chris Pires.

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Variation in gene expression between two sorghum bicolor lines differing in innate immunity response. Cui Y, Chen D, Jiang Y, Xu D, Balint-Kurti P, Stacey G. Plant; 10(8):1536.

Date published: August 1, 2021
Featured in this article: Yaya Cui, Yuexu Jiang, Dong Xu, Gary Stacey.

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Genetic mosaicism, intrafamilial phenotypic heterogeneity, and molecular defects of a novel missense SLC6A1 mutation associated with epilepsy and ADHD. Poliquin S, Hughes I, Shen W, Mermer F, Wang J, Mack T, Xu D, Kang J-Q. Experimental Neurology; 342:113723.

Date published: August 1, 2021
Featured in this article: Juexin Wang, Dong Xu.

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Arabidopsis group C Raf-like protein kinases negatively regulate abscisic acid signaling and are direct substrates of SnRK2. Kamiyama Y, Hirotani M, Ishikawa S, Minegishi F, Katagiri S, Rogan CJ, Takahashi F, Nomoto M, Ishikawa K, Kodama Y, Tada Y, Takezawa D, Anderson JC, Peck SC, Shinozaki K, Umezawa T. Proceedings of the National Academy of Sciences of the United States of America; 1118(30):e2100073118.

Date published: July 27, 2021
Featured in this article: Scott Peck.

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Indomethacin Treatment Post-irradiation Improves Mouse Parotid Salivary Gland Function via Modulation of Prostaglandin E₂ Signaling. Gilman KE, Camden JM, Woods LT, Weisman GA, Limesand KH. Frontiers in Bioengineering and Biotechnology; 9:697671.

Date published: July 21, 2021
Featured in this article: Jean Camden, Lucas Woods, Gary Weisman.

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High-Throughput Analysis of Tissue-Embedded Single Cells by Mass Spectrometry with Bimodal Imaging and Object Recognition. Stopka SA, Wood EA, Khattar R, Agtuca BJ, Abdelmoula WM, Agar NYR, Stacey G, Vertes A. Analytical Chemistry; 93(28):9677-9687.

Date published: July 20, 2021
Featured in this article: Gary Stacey.

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Editorial: Computational Resources for Understanding Biomacromolecular Covalent Modifications. Xue Y, Huang H-D, Song J, Ren J, Xu D. Frontiers in Cell and Developmental Biology; 9:728127.

Date published: July 14, 2021
Featured in this article: Dong Xu.

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G2PDeep: A web-based deep-learning framework for quantitative phenotype prediction and discovery of genomic markers. Zeng S, Mao Z, Ren Y, Wang D, Xu D, Joshi T. Nucleic Acids Research; 49(W1):W228-W236.

Date published: July 2, 2021
Featured in this article: Shuai Zeng, Duolin Wang, Dong Xu, Trupti Joshi.

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SARS-CoV-2 show no infectivity at later stages in a prolonged COVID-19 patient despite positivity in RNA testing. Wan X-F, Tang CY, Ritter D, Wang Y, Li T, Segovia K, Kosikova M, Johnson M, Kwon HJ, Xie H, Hammer RD, McElroy JA, Hamid A, Collins ND, Hang J, Camp S. Journal of Medical Virology; 93(7):4570-4575.

Date published: July 1, 2021
Featured in this article: XiuFeng “Henry” Wan, Cynthia Tang, Yang Wang, Marc Johnson.

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grasviq: an image analysis framework for automatically quantifying vein number and morphology in grass leaves. Robil JM, Gao K, Neighbors CM, Boeding M, Carland FM, Bunyak F, McSteen P. Plant Journal; 107(2):629-648.

Date published: July 1, 2021
Featured in this article: Jan Lorie Robil, Paula McSteen.

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Vascular and nonvascular transmission of systemic reactive oxygen signals during wounding and heat stress. Zandalinas SI, Mittler R. Plant Physiology; 186(3):1721-1733.

Date published: July 1, 2021
Featured in this article: Ron Mittler.

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Integration of electric, calcium, reactive oxygen species and hydraulic signals during rapid systemic signaling in plants. Fichman Y, Mittler R. Plant Journal; 107(1):7-20.

Date published: July 1, 2021
Featured in this article: Yosef Fichman, Ron Mittler.

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The best of both worlds: Combining lineage-specific and universal bait sets in target-enrichment hybridization reactions. Hendriks KP, Mandáková T, Hay NM, Ly E, Hooft van Huysduynen A, Tamrakar E, Thomas SK, Toro-Núñez O, Pires JC, Nikolov LA, Koch MA, Windham MD, Lysak MA, Forest F, Mummenhoff K, Baker WJ, Lens F, Bailey CD. Applications in Plant Sciences; 9(7):e11438.

Date published: July 1, 2021
Featured in this article: J. Chris Pires.

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Comparative phylogenetics of repetitive elements in a diverse order of flowering plants (Brassicales). Beric A, Mabry ME, Harkess AE, Brose J, Schranz ME, Conant GC, Edger PP, Meyers BC, Pires JC. G3: Genes, Genomes, Genetics; 11(7):jkab14.

Date published: July 1, 2021
Featured in this article: J. Chris Pires.

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Domain-specific Topic Model for Knowledge Discovery in Computational and Data-Intensive Scientific Communities. Zhang Y, Calyam P, Joshi T, Nair S, Xu D. IEEE Transactions on Knowledge and Data Engineering; 1-19.

Date published: July 1, 2021
Featured in this article: Trupti Joshi, Dong Xu.

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Redox-dependent structural switch and CBF activation confer freezing tolerance in plants. Lee ES, Park JH, Wi SD, Kang CH, Chi YH, Chae HB, Paeng SK, Ji MG, Kim W-Y, Kim MG, Yun D-J, Stacey G, Lee SY. Nature Plants; 7(7):914-922.

Date published: July 1, 2021
Featured in this article: Gary Stacey.

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Soybean Hairy Root Transformation: A Rapid and Highly Efficient Method. Song J, Tóth K, Montes-Luz B, Stacey G. Current Protocols; 1(7):e195.

Date published: July 1, 2021
Featured in this article: Gary Stacey.

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Mass spectrometry-based metabolomics: a guide for annotation, quantification and best reporting practices. Alseekh S, Aharoni A, Brotman Y, Contrepois K, D'Auria J, Ewald J, C Ewald J, Fraser PD, Giavalisco P, Hall RD, Heinemann M, Link H, Luo J, Neumann S, Nielsen J, Perez de Souza L, Saito K, Sauer U, Schroeder FC, Schuster S, Siuzdak G, Skirycz A, Sumner LW, Snyder MP, Tang H, Tohge T, Wang Y, Wen W, Wu S, Xu G, Zamboni N, Fernie AR. Nature Methods; 18(7):747-756.

Date published: July 1, 2021
Featured in this article: Lloyd Sumner.

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Variations outside the conserved motifs of PB1 catalytic active site may affect replication efficiency of the RNP complex of influenza A virus. Waters K, Wan HJ, Han L, Xue J, Ykema M, Tao YJ, Wan X-F. Virology; 559:145-155.

Date published: July 1, 2021
Featured in this article: XiuFeng “Henry” Wan.

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Conserved opposite functions in plant resistance to biotrophic and necrotrophic pathogens of the immune regulator srfr1. Son G-H, Moon J, Shelake RM, Vuong UT, Ingle RA, Gassmann W, Kim J-Y, Kim S-H. International Journal of Molecular Sciences; 22(12):6427.

Date published: June 2, 2021
Featured in this article: Walter Gassmann.

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Global Warming, Climate Change, and Environmental Pollution: Recipe for a Multifactorial Stress Combination Disaster. Zandalinas SI, Fritschi FB, Mittler R. Trends in Plant Science; 26(6):588-599.

Date published: June 1, 2021
Featured in this article: Ron Mittler.

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Ceruloplasmin as a source of Cu for a fungal pathogen. Besold AN, Shanbhag V, Petris MJ, Culotta VC. Journal of Inorganic Biochemistry; 219:111424.

Date published: June 1, 2021
Featured in this article: Vinit Shanbhag, Michael Petris.

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Cross species multi-omics reveals cell wall sequestration and elevated global transcript abundance as mechanisms of boron tolerance in plants. Wang G, DiTusa SF, Oh D-H, Herrmann AD, Mendoza-Cozatl DG, O'Neill MA, Smith AP, Dassanayake M. New Phytologist; 230(5):1985-2000.

Date published: June 1, 2021
Featured in this article: David Mendoza-Cózatl.

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Erratum: Are pangolins the intermediate host of the 2019 novel coronavirus (SARSCoV-2)? (PLoS Pathogens (2020) 16:5 (e1008421) DOI: 10.1371/journal.ppat.1008421). Liu P, Jiang J-Z, Wan X-F, Hua Y, Li L, Zhou J, Wang X, Hou F, Chen J, Zou J, Chen J. PLoS Pathogens; 17(6):e1009664.

Date published: June 1, 2021
Featured in this article: XiuFeng “Henry” Wan.

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Reduced Influenza B-Specific Postvaccination Antibody Cross-reactivity in the B/Victoria Lineage-Predominant 2019/20 Season. Xie H, Xiang R, Wan HJ, Plant EP, Radvak P, Kosikova M, Li X, Zoueva O, Ye Z, Wan X-F. Clinical Infectious Diseases; 72(11):E776-E783.

Date published: June 1, 2021
Featured in this article: XiuFeng “Henry” Wan.

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Mining the 99 Lives Cat Genome Sequencing Consortium database implicates genes and variants for the Ticked locus in domestic cats (Felis catus). Lyons LA, Buckley RM, Harvey RJ, Abitbol M, Aberdein D, Alves PC, Ohlsson Andersson A, Bellone RR, Bergström TF, Bilgen N, Boyko AR, Brockman JA, Casal ML, Castelhano MG, Davis BW, Davison L, Distl O, Dodman NH, Ellinwood NM, Fogle JE, Forman OP, Garrick DJ, Ginns EI, Häggström J, Hasegawa D, Haase B, Jagannathan V, Lait P, Hernandez I, Hytönen MK, Kaukonen M, Kosho T, Leclerc E, Lear TL, Leeb T, Li RHL, Lohi H, Longeri M, Magnuson MA, Malik R, Mane SP, Middleton R, Munday JS, Murphy WJ, Myers AN, Pedersen NC, Peterson-Jones SM, Rothschild MF, Rusbridge C, Schoenebeck JJ, Shapiro B, Stern JA, Swanson WF, Terio KA, Todhunter RJ, Warren WC, Wilcox EA, Wildschutte JH, Yu Y. Animal Genetics; 52(3):321-332.

Date published: June 1, 2021
Featured in this article: Wes Warren.

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Explainable artificial intelligence in high-throughput drug repositioning for subgroup stratifications with interventionable potential. Al-Taie Z, Liu D, Mitchem JB, Papageorgiou C, Kaifi JT, Warren WC, Shyu C-R. Journal of Biomedical Informatics; 118:103792.

Date published: June 1, 2021
Featured in this article: Wes Warren.

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3D genomics across the tree of life reveals condensin II as a determinant of architecture type. Hoencamp C, Dudchenko O, Elbatsh AMO, Brahmachari S, Raaijmakers JA, van Schaik T, Cacciatore ÁS, Contessoto VG, van Heesbeen RGHP, van den Broek B, Mhaskar AN, Teunissen H, St Hilaire GB, Weisz D, Omer AD, Pham M, Colaric Z, Yang Z, Rao SSP, Mitra N, Lui C, Yao W, Khan R, Moroz LL, Kohn A, St Leger J, Mena A, Holcroft K, Gambetta MC, Lim F, Farley E, Stein N, Haddad A, Chauss D, Mutlu AS, Wang MC, Young ND, Hildebrandt E, Cheng HH, Knight CJ, Burnham TLU, Hovel KA, Beel AJ, Mattei P-J, Kornberg RD, Warren WC, Cary G, Gómez-Skarmeta JL, Hinman V, Lindblad-Toh K, Palma FD, Maeshima K, Multani AS, Pathak S, Nel-Themaat L, Behringer RR, Kaur P, Medema RH, van Steensel B, de Wit E, Onuchic JN, Di Pierro M, Aiden EL, Rowland BD. Science; 372(6545):abe2218.

Date published: May 28, 2021
Featured in this article: Wes Warren.

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Transcription Factor β-Catenin Plays a Key Role in Fluid Flow Shear Stress-Mediated Glomerular Injury in Solitary Kidney. Srivastava T, Heruth DP, Duncan RS, Rezaiekhaligh MH, Garola RE, Priya L, Boinpelly VC, Novak J, Ali MF, Joshi T, Alon US, Jiang Y, McCarthy ET, Savin VJ, Sharma R, Johnson ML, Sharma M. Cells; 10(5).

Date published: May 19, 2021
Featured in this article: Trupti Joshi, Yuexu Jiang.

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DM3Loc: Multi-label mRNA subcellular localization prediction and analysis based on multi-head self-attention mechanism. Wang D, Zhang Z, Jiang Y, Mao Z, Wang D, Lin H, Xu D. Nucleic Acids Research; 49(8):E46.

Date published: May 7, 2021
Featured in this article: Dong Xu.

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The impact of water deficit and heat stress combination on the molecular response, physiology, and seed production of soybean. Cohen I, Zandalinas SI, Fritschi FB, Sengupta S, Fichman Y, Azad RK, Mittler R. Physiologia Plantarum; 172(1):41-52.

Date published: May 1, 2021
Featured in this article: Yosef Fichman, Ron Mittler.

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The impact of multifactorial stress combination on plant growth and survival. Zandalinas SI, Sengupta S, Fritschi FB, Azad RK, Nechushtai R, Mittler R. New Phytologist; 230(3):1034-1048.

Date published: May 1, 2021
Featured in this article: Ron Mittler.

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P2Y receptors for extracellular nucleotides: Contributions to cancer progression and therapeutic implications. Woods LT, Forti KM, Shanbhag VC, Camden JM, Weisman GA. Biochemical Pharmacology; 187:114406.

Date published: May 1, 2021
Featured in this article: Lucas Woods, Kevin Muñoz Forti, Vinit Shanbhag, Jean Camden, Gary Weisman.

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Genetic variation, environment and demography intersect to shape Arabidopsis defense metabolite variation across Europe. Katz E, Li J-J, Jaegle B, Ashkenazy H, Abrahams SR, Bagaza C, Holden S, Pires CJ, Angelovici R, Kliebenstein DJ. eLife; 10:e67784.

Date published: May 1, 2021
Featured in this article: Clement Bagaza, J. Chris Pires, Ruthie Angelovici.

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Nuclear localization of hopa1pss61 is required for effector-triggered immunity. Kang H, Nguyen Q-M, Iswanto ABB, Hong JC, Bhattacharjee S, Gassmann W, Kim SH. Plants; 10(5):888.

Date published: May 1, 2021
Featured in this article: Walter Gassmann.

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Diazotrophic bacteria and their mechanisms to interact and benefit cereals. Silva Pankievicz VC, do Amaral FP, Ané J-M, Stacey G. Molecular Plant-Microbe Interactions; 34(5):491-498.

Date published: May 1, 2021
Featured in this article: Gary Stacey.

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Rapid high-throughput whole-genome sequencing of SARS-CoV-2 by using one-step reverse transcription-PCR amplification with an integrated microfluidic system and next-generation sequencing. Li T, Chung HK, Pireku PK, Beitzel BF, Sanborn MA, Tang CY, Hammer RD, Ritter D, Wan X-F, Berry IM, Hang J. Journal of Clinical Microbiology; 59(5):e02784-20.

Date published: May 1, 2021
Featured in this article: Cynthia Tang, XiuFeng “Henry” Wan.

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Current and prospective methods for assessing anti-tumor immunity in colorectal cancer. Nussbaum YI, Manjunath Y, Suvilesh KN, Warren WC, Shyu C-R, Kaifi JT, Ciorba MA, Mitchem JB. International Journal of Molecular Sciences; 22(9):4802.

Date published: May 1, 2021
Featured in this article: Wes Warren.

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Terminal Epitope-Dependent Branch Preference of Siglecs Toward N-Glycans. Wang S, Chen C, Guan M, Liu D, Wan X-F, Li L. Frontiers in Molecular Biosciences; 8:645999.

Date published: April 29, 2021
Featured in this article: Minhui Guan, XiuFeng “Henry” Wan.

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Towards complete and error-free genome assemblies of all vertebrate species. Rhie A, McCarthy SA, Fedrigo O, Damas J, Formenti G, Koren S, Uliano-Silva M, Chow W, Fungtammasan A, Kim J, Lee C, Ko BJ, Chaisson M, Gedman GL, Cantin LJ, Thibaud-Nissen F, Haggerty L, Bista I, Smith M, Haase B, Mountcastle J, Winkler S, Paez S, Howard J, Vernes SC, Lama TM, Grutzner F, Warren WC, Balakrishnan CN, Burt D, George JM, Biegler MT, Iorns D, Digby A, Eason D, Robertson B, Edwards T, Wilkinson M, Turner G, Meyer A, Kautt AF, Franchini P, Detrich HW III, Svardal H, Wagner M, Naylor GJP, Pippel M, Malinsky M, Mooney M, Simbirsky M, Hanningan BT, Pesout T, Houck M, Misuraca A, Kingan SB, Hall R, Kronenberg Z, Sović I, Dunn C, Ning Z, Hastie A, Lee J, Selvaraj S, Green RE, Putnam NH, Gut I, Ghurye J, Garrison E, Sims Y, Collins J, Pelan S, Torrance J, Tracey A, Wood J, Dagnew RE, Guan D, London SE, Clayton DF, Mello CV, Friedrich SR, Lovell PV, Osipova E, Al-Ajli FO, Secomandi S, Kim H, Theofanopoulou C, Hiller M, Zhou Y, Harris RS, Makova KD, Medvedev P, Hoffman J, Masterson P, Clark K, Martin F, Howe K, Flicek P, Walenz BP, Kwak W, Clawson H, Diekhans M, Nassar L, Paten B, Kraus RHS, Crawford AJ, Gilbert MTP, Zhang G, Venkatesh B, Murphy RW, Koepfli K-P, Shapiro B, Johnson WE, Di Palma F, Marques-Bonet T, Teeling EC, Warnow T, Graves JM, Ryder OA, Haussler D, O'Brien SJ, Korlach J, Lewin HA, Howe K, Myers EW, Durbin R, Phillippy AM, Jarvis ED. Nature; 592(7856):737-746.

Date published: April 29, 2021
Featured in this article: Wes Warren.

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Mass Spectrometry Imaging of Bio-oligomer Polydispersity in Plant Tissues by Laser Desorption Ionization from Silicon Nanopost Arrays. Samarah LZ, Tran TH, Stacey G, Vertes A. Angewandte Chemie - International Edition; 60(16):9071-9077.

Date published: April 12, 2021
Featured in this article: Gary Stacey.

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Genes derived from ancient polyploidy have higher genetic diversity and are associated with domestication in Brassica rapa. Qi X, An H, Hall TE, Di C, Blischak PD, McKibben MTW, Hao Y, Conant GC, Pires JC, Barker MS. New Phytologist; 230(1):372-386.

Date published: April 1, 2021
Featured in this article: Hong An, J. Chris Pires.

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Replaying the evolutionary tape to investigate subgenome dominance in allopolyploid Brassica napus. Bird KA, Niederhuth CE, Ou S, Gehan M, Pires JC, Xiong Z, VanBuren R, Edger PP. New Phytologist; 230(1):354-371.

Date published: April 1, 2021
Featured in this article: J. Chris Pires.

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Feralization: Confronting the Complexity of Domestication and Evolution. Mabry ME, Rowan TN, Pires JC, Decker JE. Trends in Genetics; 37(4):302-305.

Date published: April 1, 2021
Featured in this article: J. Chris Pires.

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Soybean transporter database: A comprehensive database for identification and exploration of natural variants in soybean transporter genes. Deshmukh R, Rana N, Liu Y, Zeng S, Agarwal G, Sonah H, Varshney R, Joshi T, Patil GB, Nguyen HT. Physiologia Plantarum; 171(4):756-770.

Date published: April 1, 2021
Featured in this article: Shuai Zeng, Trupti Joshi.

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A medicago truncatula metabolite atlas enables the visualization of differential accumulation of metabolites in root tissues. Kranawetter C, Zeng S, Joshi T, Sumner LW. Metabolites; 11(4):238.

Date published: April 1, 2021
Featured in this article: Clayton Kranawetter, Shuai Zeng, Trupti Joshi, Lloyd Sumner.

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A review on medical management of inflammatory bowel disease during the coronavirus disease 2019 pandemic. Chela H, Pasha SB, Wan X-F, Ghouri YA. Journal of Gastroenterology and Hepatology (Australia); 36(4):918-926.

Date published: April 1, 2021
Featured in this article: XiuFeng “Henry” Wan.

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P2Y₂ receptor antagonism resolves sialadenitis and improves salivary flow in a Sjögren’s syndrome mouse model. Jasmer KJ, Woods LT, Forti KM, Martin AL, Camden JM, Colanna M, Weisman GA. Archives of Oral Biology; 124:105067.

Date published: April 1, 2021
Featured in this article: Kimberly Jasmer, Lucas Woods, Kevin Muñoz Forti, Jean Camden, Gary Weisman.

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Final Selection of Quality Protein Popcorn Hybrids. Parsons L, Ren Y, Yobi A, Angelovici R, Rodriguez O, Holding DR. Frontiers in Plant Science; 12:658456.

Date published: March 24, 2021
Featured in this article: Abou Yobi, Ruthie Angelovici.

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Draft Genome Sequence of the Putative Endophytic Bacterium Pantoea agglomerans R6, Associated with Lactuca serriola from South Africa. Istain B, Mokgokong PS, Wu R, Mia J, Gokul A, Mendoza-Cozatl D, Plessis MD, Keyster M. Microbiology Resource Announcements; 10(10):e00023-21.

Date published: March 11, 2021
Featured in this article: David Mendoza-Cózatl.

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The Developmental and Genetic Architecture of the Sexually Selected Male Ornament of Swordtails. Schartl M, Kneitz S, Ormanns J, Schmidt C, Anderson JL, Amores A, Catchen J, Wilson C, Geiger D, Winkler C, Hedrich R, Warren WC, Walter R, Meyer A, Postlethwait JH. Current Biology; 31(5):911-922.e4.

Date published: March 8, 2021
Featured in this article: Wes Warren.

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The Molecular Basis of Kale Domestication: Transcriptional Profiling of Developing Leaves Provides New Insights Into the Evolution of a Brassica oleracea Vegetative Morphotype. Arias T, Niederhuth CE, McSteen P, Pires JC. Frontiers in Plant Science; 12:637115.

Date published: March 5, 2021
Featured in this article: Paula McSteen, J. Chris Pires.

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Exogenous 3,3′-diindolylmethane improves vanadium stress tolerance in brassica napus seedling shoots by modulating antioxidant enzyme activities. Gokul A, Fahiem Carelse M, Niekerk L-A, Klein A, Ludidi N, Mendoza-Cozatl D, Keyster M. Biomolecules; 11(3):1-18.

Date published: March 3, 2021
Featured in this article: David Mendoza-Cózatl.

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Predicting Resolvin D1 Pharmacokinetics in Humans with Physiologically-Based Pharmacokinetic Modeling. Yellepeddi VK, Parashar K, Dean SM, Watt KM, Constance JE, Baker OJ. Clinical and Translational Science; 14(2):683-691.

Date published: March 1, 2021
Featured in this article: Olga Baker.

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Trimers Conjugated to Fibrin Hydrogels Promote Salivary Gland Function. Dos Santos HT, Nam K, Brown CT, Dean SM, Lewis S, Pfeifer CS, Lei P, Petris MJ, Andreadis ST, Baker OJ. Journal of Dental Research; 100(3):268-275.

Date published: March 1, 2021
Featured in this article: Harim Tavares dos Santos, Kihoon Nam, Michael Petris, Olga Baker.

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The Conserved arginine required for avrrps4 processing is also required for recognition of its n-terminal fragment in lettuce. Su J, Nguyen Q-M, Kimble A, Pike SM, Kim SH, Gassmann W. Molecular Plant-Microbe Interactions; 34(3):270-278.

Date published: March 1, 2021
Featured in this article: Jianbin Su, Sharon Pike, Walter Gassmann.

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H7N1 Low Pathogenicity Avian Influenza Viruses in Poultry in the United States during 2018. Lee D-H, Killian ML, Deliberto TJ, Wan X-F, Lei L, Swayne DE, Torchetti MK. Avian Diseases; 65(1):59-62.

Date published: March 1, 2021
Featured in this article: XiuFeng “Henry” Wan.

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Ultracontinuous Single Haplotype Genome Assemblies for the Domestic Cat (Felis catus) and Asian Leopard Cat (Prionailurus bengalensis). Bredemeyer KR, Harris AJ, Li G, Zhao L, Foley NM, Roelke-Parker M, O'Brien SJ, Lyons LA, Warren WC, Murphy WJ. Journal of Heredity; 112(2):165-173.

Date published: March 1, 2021
Featured in this article: Wes Warren.

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Cross species multi-omics reveals cell wall sequestration and elevated global transcript abundance as mechanisms of boron tolerance in plants. Wang G, DiTusa SF, Oh D-H, Herrmann AD, Mendoza-Cozatl DG, O'Neill MA, Smith AP, Dassanayake M. New Phytologist; 230:1985-2000.

Date published: February 25, 2021
Featured in this article: David Mendoza-Cózatl.

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Opposing functions of the plant TOPLESS gene family during SNC1-mediated autoimmunity. Garner CM, Spears BJ, Su J, Cseke LJ, Smith SN, Rogan CJ, Gassmann W. PLoS Genetics; 17(2):e1009026.

Date published: February 23, 2021
Featured in this article: Jianbin Su, Leland Cseke, Walter Gassmann.

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Plasmodesmata-localized proteins and ROS orchestrate light-induced rapid systemic signaling in Arabidopsis. Fichman Y, Myers RJ Jr, Grant DG, Mittler R. Science Signaling; 14(671):eabf0322.

Date published: February 23, 2021
Featured in this article: Yosef Fichman, Ronald Jr. Myers, Ron Mittler.

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The genomics of ecological flexibility, large brains, and long lives in capuchin monkeys revealed with fecalFACS. Orkin JD, Montague MJ, Tejada-Martinez D, de Manuel M, del Campo J, Hernandez SC, Fiore AD, Fontsere C, Hodgson JA, Janiak MC, Kuderna LFK, Lizano E. Proceedings of the National Academy of Sciences of the United States of America; 118(7):e2010632118.

Date published: February 16, 2021
Featured in this article: Wes Warren.

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The mitochondrial localized CISD-3.1/CISD-3.2 proteins are required to maintain normal germline structure and function in Caenorhabditis elegans. King SD, Gray CF, Song L, Mittler R, Padilla PA. PLoS ONE; 16(2):e0245174.

Date published: February 1, 2021
Featured in this article: Ron Mittler.

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Copper metabolism as a unique vulnerability in cancer. Shanbhag VC, Gudekar N, Jasmer K, Papageorgiou C, Singh K, Petris MJ. Biochimica et Biophysica Acta - Molecular Cell Research; 1868(2):118893.

Date published: February 1, 2021
Featured in this article: Vinit Shanbhag, Nikita Gudekar, Kimberly Jasmer, Kamlendra Singh, Michael Petris.

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Chromosome inheritance and meiotic stability in allopolyploid Brassica napus. Xiong Z, Gaeta RT, Edger PP, Cao Y, Zhao K, Zhang S, Chris Pires J. G3: Genes, Genomes, Genetics; 11(2):jkaa011.

Date published: February 1, 2021
Featured in this article: J. Chris Pires.

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Placental SARS-CoV-2 in a pregnant woman with mild COVID-19 disease. Hsu AL, Guan M, Johannesen E, Stephens AJ, Khaleel N, Kagan N, Tuhlei BC, Wan X-F. Journal of Medical Virology; 93(2):1038-1044.

Date published: February 1, 2021
Featured in this article: Minhui Guan, XiuFeng “Henry” Wan.

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Short-duration splice promoting compound enables a tunable mouse model of spinal muscular atrophy. Rietz A, Hodgetts KJ, Lusic H, Quist KM, Osman EY, Lorson CL, Androphy EJ. Life Science Alliance; 4(1):e202000889.

Date published: January 1, 2021
Featured in this article: Christian Lorson.

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Meta-analysis of drought and heat stress combination impact on crop yield and yield components. Cohen I, Zandalinas SI, Huck C, Fritschi FB, Mittler R. Physiologia Plantarum; 171(1):66-76.

Date published: January 1, 2021
Featured in this article: Ron Mittler.

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Integration of reactive oxygen species and hormone signaling during abiotic stress. Devireddy AR, Zandalinas SI, Fichman Y, Mittler R. Plant Journal; 105(2):459-476.

Date published: January 1, 2021
Featured in this article: Yosef Fichman, Ron Mittler.

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Coronavirus helicases: attractive and unique targets of antiviral drug-development and therapeutic patents. Spratt AN, Gallazzi F, Quinn TP, Lorson CL, Sönnerborg A, Singh K. Expert Opinion on Therapeutic Patents; 31(4):339-350.

Date published: January 1, 2021
Featured in this article: Fabio Gallazzi, Thomas Quinn, Christian Lorson, Kamlendra Singh.

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Evolution, correlation, structural impact and dynamics of emerging SARS-CoV-2 variants. Spratt AN, Kannan SR, Woods LT, Weisman GA, Quinn TP, Lorson CL, Sönnerborg A, Byrareddy SN, Singh K. Computational and Structural Biotechnology Journal; 19:3799-3809.

Date published: January 1, 2021
Featured in this article: Lucas Woods, Gary Weisman, Thomas Quinn, Christian Lorson, Kamlendra Singh.

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Multi-Cloud Performance and Security Driven Federated Workflow Management. Dickinson M, Debroy S, Calyam P, Valluripally S, Zhang Y, Antequera RB, Joshi T, White T, Xu D. IEEE Transactions on Cloud Computing; 9(1):240-257.

Date published: January 1, 2021
Featured in this article: Trupti Joshi, Dong Xu.

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Application of SNPViz v2.0 using next-generation sequencing data sets in the discovery of potential causative mutations in candidate genes associated with phenotypes. Zeng S, Škrabišová M, Lyu Z, Chan YO, Dietz N, Bilyeu K, Joshi T. International Journal of Data Mining and Bioinformatics; 25(1-2):65-85.

Date published: January 1, 2021
Featured in this article: Shuai Zeng, Zhen Lyu, Yen On Chan, Trupti Joshi.

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Transcriptomic changes of murine visceral fat exposed to intermittent hypoxia at single cell resolution. Khalyfa A, Warren W, Andrade J, Bottoms CA, Rice ES, Cortese R, Kheirandish-Gozal L, Gozal D. International Journal of Molecular Sciences; 22(1):1-24.

Date published: January 1, 2021
Featured in this article: Wes Warren.

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Fixation of allelic gene expression landscapes and expression bias pattern shape the transcriptome of the clonal Amazon molly. Lu Y, Bierbach D, Ormanns J, Warren WC, Walter RB, Schartl M. Genome Research; 31(3):372-379.

Date published: January 1, 2021
Featured in this article: Wes Warren.

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Epigenetic Regulation of Cancer Immune Cells. Avella Patino DM, Radhakrishnan V, Suvilesh KN, Manjunath Y, Li G, Kimchi ET, Staveley-O'Carroll KF, Warren WC, Kaifi JT, Mitchem JB. Seminars in Cancer Biology; 1-7.

Date published: January 1, 2021
Featured in this article: Wes Warren.

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MusiteDeep: A deep-learning based webserver for protein post-translational modification site prediction and visualization. Wang D, Liu D, Yuchi J, He F, Jiang Y, Cai S, Li J, Xu D. Nucleic Acids Research; 48(W1):W140-W146.

Date published: January 1, 2021
Featured in this article: Dong Xu.

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Overlapping community detection based on membership degree propagation. Gao R, Li S, Shi X, Liang Y, Xu D. Entropy; 23(1):1-35.

Date published: January 1, 2021
Featured in this article: Dong Xu.

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[Deep Neural Architecture Search: A Survey] [深度神经架构搜索综述]. Meng Z, Gu X, Liang Y, Xu D, Wu C. Jisuanji Yanjiu yu Fazhan/Computer Research and Development; 58(1):22-33.

Date published: January 1, 2021
Featured in this article: Dong Xu.

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MULocDeep: A deep-learning framework for protein subcellular and suborganellar localization prediction with residue-level interpretation. Jiang Y, Wang D, Yao Y, Eubel H, Künzler P, Møller IM, Xu D. Computational and Structural Biotechnology Journal; 19:4825-4839.

Date published: January 1, 2021
Featured in this article: Dong Xu.

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Computational methods for protein localization prediction. Jiang Y, Wang D, Wang W, Xu D. Computational and Structural Biotechnology Journal; 19:5834-5844.

Date published: January 1, 2021
Featured in this article: Dong Xu.

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2020

Sequence diversity analyses of an improved rhesus macaque genome enhance its biomedical utility. Warren WC, Harris RA, Haukness M, Fiddes IT, Murali SC, Fernandes J, Dishuck PC, Storer JM, Raveendran M, Hillier LW, Porubsky D, Mao Y, Gordon D, Vollger MR, Lewis AP, Munson KM, Devogelaere E, Armstrong J, Diekhans M, Walker JA, Tomlinson C, Graves-Lindsay TA, Kremitzki M, Salama SR, Audano PA, Escalona M, Maurer NW, Antonacci F, Mercuri L, Maggiolini FAM, Catacchio CR, Underwood JG, O'Connor DH, Sanders AD, Korbel JO, Ferguson B, Kubisch HM, Picker L, Kalin NH, Rosene D, Levine J, Abbott DH, Gray SB, Sanchez MM, Kovacs-Balint ZA, Kemnitz JW, Thomasy SM, Roberts JA, Kinnally EL, Capitanio JP, Skene JHP, Platt M, Cole SA, Green RE, Ventura M, Wiseman RW, Paten B, Batzer MA, Rogers J, Eichler EE. Science; 370(6523):eabc6617.

Date published: December 18, 2020
Featured in this article: Wes Warren.

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CRISPR/Cas9-Mediated Knockout of Galactinol Synthase-Encoding Genes Reduces Raffinose Family Oligosaccharide Levels in Soybean Seeds. Le H, Nguyen NH, Ta DT, Le TNT, Bui TP, Le NT, Nguyen CX, Rolletschek H, Stacey G, Stacey MG, Pham NB, Do PT, Chu HH. Frontiers in Plant Science; 11:612942.

Date published: December 17, 2020
Featured in this article: Gary Stacey, Minviluz (Bing) Stacey.

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A multiomics discriminatory analysis approach to identify drought-related signatures in maize nodal roots. Sen S, McCubbin T, King SK, Greeley LA, Zeng S, Baker C, Mertz R, Niehues ND, Stemmle JT, Fristchi FB, Braun D, Peck SC, Oliver MJ, Sharp RE, Joshi T. Proceedings - 2020 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2020; 1856-1861.

Date published: December 16, 2020
Featured in this article: Sidharth Sen, Laura Greeley, Shuai Zeng, Scott Peck, Trupti Joshi.

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SNPViz v2.0: A web-based tool for enhanced haplotype analysis using large scale resequencing datasets and discovery of phenotypes causative gene using allelic variations. Zeng S, Skrabisova M, Lyu Z, Chan YO, Bilyeu K, Joshi T. Proceedings - 2020 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2020; 1408-1415.

Date published: December 16, 2020
Featured in this article: Shuai Zeng, Zhen Lyu, Yen On Chan, Trupti Joshi.

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A Formative Usability Study to Improve Prescriptive Systems for Bioinformatics Big Data. Singh K, Li S, Jahnke I, Pandey A, Lyu Z, Joshi T, Calyam P. Proceedings - 2020 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2020; 735-742.

Date published: December 16, 2020
Featured in this article: Kamlendra Singh, Zhen Lyu, Trupti Joshi.

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Author Correction: Elephant shark genome provides unique insights into gnathostome evolution (Nature, (2014), 505, 7482, (174-179), 10.1038/nature12826). Venkatesh B, Lee AP, Ravi V, Maurya AK, Lian MM, Swann JB, Ohta Y, Flajnik MF, Sutoh Y, Kasahara M, Hoon S, Gangu V, Roy SW, Irimia M, Korzh V, Kondrychyn I, Lim ZW, Tay B-H, Tohari S, Kong KW, Ho S, Lorente-Galdos B, Quilez J, Marques-Bonet T, Raney BJ, Ingham PW, Tay A, Hillier LW, Minx P, Boehm T, Wilson RK, Brenner S, Warren WC. Nature; 588(7837):E15.

Date published: December 10, 2020
Featured in this article: Wes Warren.

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Cell Sheets Restore Secretory Function in Wounded Mouse Submandibular Glands. Dos Santos HT, Kim K, Okano T, Camden JM, Weisman GA, Baker OJ, Nam K. Cells; 9(12).

Date published: December 9, 2020
Featured in this article: Harim Tavares dos Santos, Jean Camden, Gary Weisman, Olga Baker, Kihoon Nam.

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Genome-wide identification of the expansin gene family and its potential association with drought stress in moso bamboo. Jin K-M, Zhuo R-Y, Xu D, Wang Y-J, Fan H-J, Huang B-Y, Qiao G-R. International Journal of Molecular Sciences; 21(24):1-21.

Date published: December 2, 2020
Featured in this article: Dong Xu.

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Leaping into the unknown world of sporisorium scitamineum candidate effectors. Teixeira-Silva NS, Schaker PDC, Rody HVS, Maia T, Garner CM, Gassmann W, Monteiro-Vitorello CB. Journal of Fungi; 6(4):1-26.

Date published: December 1, 2020
Featured in this article: Walter Gassmann.

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Infectivity of SARS-CoV-2: there Is Something More than D614G?. Kannan SR, Spratt AN, Quinn TP, Heng X, Lorson CL, Sönnerborg A, Byrareddy SN, Singh K. Journal of Neuroimmune Pharmacology; 15(4):574-577.

Date published: December 1, 2020
Featured in this article: Thomas Quinn, Christian Lorson, Kamlendra Singh.

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Metallothioneins regulate ATP7A trafficking and control cell viability during copper deficiency and excess. Gudekar N, Shanbhag V, Wang Y, Ralle M, Weisman GA, Petris MJ. Scientific Reports; 10(1):7856.

Date published: December 1, 2020
Featured in this article: Nikita Gudekar, Vinit Shanbhag, Gary Weisman, Michael Petris.

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Developmental exposure of California mice to endocrine disrupting chemicals and potential effects on the microbiome-gut-brain axis at adulthood. Kaur S, Sarma SJ, Marshall BL, Liu Y, Kinkade JA, Bellamy MM, Mao J, Helferich WG, Schenk AK, Bivens NJ, Lei Z, Sumner LW, Bowden JA, Koelmel JP, Joshi T, Rosenfeld CS. Scientific Reports; 10(1):10902.

Date published: December 1, 2020
Featured in this article: Saurav Sarma, Jessica Kinkade, Jiude Mao, Nathan Bivens, Zhentian Lei, Lloyd Sumner, Trupti Joshi.

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Author Correction: Developmental exposure of California mice to endocrine disrupting chemicals and potential effects on the microbiome-gut-brain axis at adulthood (Scientific Reports, (2020), 10, 1, (10902), 10.1038/s41598-020-67709-9). Kaur S, Sarma SJ, Marshall BL, Liu Y, Kinkade JA, Bellamy MM, Mao J, Helferich WG, Schenk AK, Bivens NJ, Lei Z, Sumner LW, Bowden JA, Koelmel JP, Joshi T, Rosenfeld CS. Scientific Reports; 10(1):12524.

Date published: December 1, 2020
Featured in this article: Saurav Sarma, Jessica Kinkade, Jiude Mao, Nathan Bivens, Zhentian Lei, Lloyd Sumner, Trupti Joshi.

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Increased HIV in Greater Kinshasa Urban Health Zones: Democratic Republic of Congo (2017–2018). Pour M, James L, Singh K, Mampunza S, Baer F, Scott JA, Berg MG, Rodgers MA, Cloherty GA, Hackett J Jr, McArthur CP. AIDS Research and Therapy; 17(1):67.

Date published: December 1, 2020
Featured in this article: Kamlendra Singh.

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Selective Enrichment Coupled with Proteomics to Identify S-Acylated Plasma Membrane Proteins in Arabidopsis. Zhou L, Zhou M, Gritsenko MA, Stacey G. Current Protocols In Plant Biology; 5(4):e20119.

Date published: December 1, 2020
Featured in this article: Gary Stacey.

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Genome-wide association analysis of the strength of the MAMP-elicited defense response and resistance to target leaf spot in sorghum. Samira R, Kimball JA, Samayoa LF, Holland JB, Jamann TM, Brown PJ, Stacey G, Balint-Kurti PJ. Scientific Reports; 10(1):20817.

Date published: December 1, 2020
Featured in this article: Gary Stacey.

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Light spectra affect the in vitro shoot development of Cedrela fissilis Vell. (Meliaceae) by changing the protein profile and polyamine contents. Oliveira TDR, Aragão VPM, Moharana KC, Fedosejevs E, do Amaral FP, Sousa KR, Thelen JJ, Venâncio TM, Silveira V, Santa-Catarina C. Biochimica et Biophysica Acta - Proteins and Proteomics; 1868(12):140529.

Date published: December 1, 2020
Featured in this article: Jay Thelen.

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Docking of acetyl-CoA carboxylase to the plastid envelope membrane attenuates fatty acid production in plants. Ye Y, Nikovics K, To A, Lepiniec L, Fedosejevs ET, Van Doren SR, Baud S, Thelen JJ. Nature Communications; 11(1):6191.

Date published: December 1, 2020
Featured in this article: Jay Thelen.

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Antibody responses to sars-cov-2 antigens in humans and animals. Kim H, Seiler P, Jones JC, Ridout G, Camp KP, Fabrizio TP, Jeevan T, Miller LA, Throm RE, Ferrara F, Fredrickson RL, Lowe JF, Wang L, Odemuyiwa SO, Wan X-F, Webby RJ. Vaccines; 8(4):1-15.

Date published: December 1, 2020
Featured in this article: XiuFeng “Henry” Wan.

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Cross-Protection by Inactivated H5 Prepandemic Vaccine Seed Strains against Diverse Goose/Guangdong Lineage H5N1 Highly Pathogenic Avian Influenza Viruses. Criado MF, Sá e Silva M, Lee D-H, de Lima Salge CA, Spackman E, Donis R, Wan X-F, Swayne DE. Journal of Virology; 94(24):e00720-20.

Date published: December 1, 2020
Featured in this article: XiuFeng “Henry” Wan.

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Tissue Tropisms of Avian Influenza A Viruses Affect Their Spillovers from Wild Birds to Pigs. Zhang X, Cunningham FL, Li L, Hanson-Dorr K, Liu L, Waters K, Guan M, Olivier AK, Schmit BS, Nolting JM, Bowman AS, Torchetti MK, DeLiberto TJ, Wan X-F. Journal of Virology; 94(24):e00847-20.

Date published: December 1, 2020
Featured in this article: Minhui Guan, XiuFeng “Henry” Wan.

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Global assessment of organ specific basal gene expression over a diurnal cycle with analyses of gene copies exhibiting cyclic expression patterns. Lu Y, Boswell M, Boswell W, Salinas R, Savage M, Reyes J, Walter S, Marks R, Gonzalez T, Medrano G, Warren WC, Schartl M, Walter RB. BMC Genomics; 21(1):787.

Date published: December 1, 2020
Featured in this article: Wes Warren.

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Radiation-induced salivary gland dysfunction: Mechanisms, therapeutics and future directions. Jasmer KJ, Gilman KE, Forti KM, Weisman GA, Limesand KH. Journal of Clinical Medicine; 9(12):1-37.

Date published: December 1, 2020
Featured in this article: Kimberly Jasmer, Kevin Muñoz Forti, Gary Weisman.

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Single-Cell Techniques and Deep Learning in Predicting Drug Response. Wu Z, Lawrence PJ, Ma A, Zhu J, Xu D, Ma Q. Trends in Pharmacological Sciences; 41(12):1050-1065.

Date published: December 1, 2020
Featured in this article: Dong Xu.

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Deep Learning Detection of Inaccurate Smart Electricity Meters: A Case Study. Liu M, Liu D, Sun G, Zhao Y, Wang D, Liu F, Fang X, He Q, Xu D. IEEE Industrial Electronics Magazine; 14(4):79-90.

Date published: December 1, 2020
Featured in this article: Dong Xu.

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Oncogenic allelic interaction in Xiphophorus highlights hybrid incompatibility. Lu Y, Sandoval A, Voss S, Lai Z, Kneitz S, Boswell W, Boswell M, Savage M, Walter C, Warren W, Schartl M, Walter R. Proceedings of the National Academy of Sciences of the United States of America; 117(47):29786-29794.

Date published: November 24, 2020
Featured in this article: Wes Warren.

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Sequence analysis in Bos taurus reveals pervasiveness of X–Y arms races in mammalian lineages. Hughes JF, Skaletsky H, Pyntikova T, Koutseva N, Raudsepp T, Brown LG, Bellott DW, Cho T-J, Dugan-Rocha S, Khan Z, Kremitzki C, Fronick C, Graves-Lindsay TA, Fulton L, Warren WC, Wilson RK, Owens E, Womack JE, Murphy WJ, Muzny DM, Worley KC, Chowdhary BP, Gibbs RA, Page DC. Genome Research; 31(12):1716-1726.

Date published: November 18, 2020
Featured in this article: Wes Warren.

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Recommender-as-a-service with chatbot guided domain-science knowledge discovery in a science gateway. Vekaria K, Calyam P, Sivarathri SS, Wang S, Zhang Y, Pandey A, Chen C, Xu D, Joshi T, Nair S. Concurrency Computation; 33:e6080.

Date published: November 11, 2020
Featured in this article: Dong Xu, Trupti Joshi.

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Utility of Proteomics in Emerging and Re-Emerging Infectious Diseases Caused by RNA Viruses. Sperk M, Van Domselaar R, Rodriguez JE, Mikaeloff F, Sá Vinhas B, Saccon E, Sönnerborg A, Singh K, Gupta S, Végvári Á, Neogi U. Journal of Proteome Research; 19(11):4259-4274.

Date published: November 6, 2020
Featured in this article: Kamlendra Singh.

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Phytochrome B is required for systemic stomatal responses and reactive oxygen species signaling during light stress. Devireddy AR, Liscum E, Mittler R. Plant Physiology; 184(3):1563-1572.

Date published: November 3, 2020
Featured in this article: Ron Mittler.

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Genomic prediction informed by biological processes expands our understanding of the genetic architecture underlying free amino acid traits in dry arabidopsis seeds. Turner-Hissong SD, Bird KA, Lipka AE, King EG, Beissinger TM, Angelovici R. G3: Genes, Genomes, Genetics; 10(11):4227-4239.

Date published: November 1, 2020
Featured in this article: Ruthie Angelovici.

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2′-fluoro-modified pyrimidines enhance affinity of RNA oligonucleotides to HIV-1 reverse transcriptase. Gruenke, PR, Alam, KK, Singh K, Burke DH. RNA; 26(11):1667-1679.

Date published: November 1, 2020
Featured in this article: Paige Gruenke, Kamlendra Singh, Donald Burke-Agüero.

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Heme oxygenase promotes B-Raf-dependent melanosphere formation. Jasmer KJ, Hou J, Mannino P, Cheng J, Hannink M. Pigment Cell and Melanoma Research; 33(6):850-868.

Date published: November 1, 2020
Featured in this article: Kimberly Jasmer, Mark Hannink.

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The balancing act of NEET proteins: Iron, ROS, calcium and metabolism. Nechushtai R, Karmi O, Zuo K, Marjault H-B, Darash-Yahana M, Sohn Y-S, King SD, Zandalinas SI, Carloni P, Mittler R. Biochimica et Biophysica Acta - Molecular Cell Research; 1867(11):118805.

Date published: November 1, 2020
Featured in this article: Ron Mittler.

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High temperatures modify plant responses to abiotic stress conditions. Balfagón D, Zandalinas SI, Mittler R, Gómez-Cadenas A. Physiologia Plantarum; 170(3):335-344.

Date published: November 1, 2020
Featured in this article: Ron Mittler.

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Vascular bundles mediate systemic reactive oxygen signaling during light stress. Zandalinas SI, Fichman Y, Mittler R. Plant Cell; 32(11):3425-3435.

Date published: November 1, 2020
Featured in this article: Yosef Fichman, Ron Mittler.

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Correction: Stuckel, et al.; Enhanced CXCR4 expression associates with increased gene body 5-hydroxymethylcytosine modification but not decreased promoter methylation in colorectal cancer. (Cancers 2020, 12, 539). Stuckel AJ, Zhang W, Zhang X, Zeng S, Dougherty U, Mustafi, Zhang Q, Perreand E, Khare T, Joshi T, West-Szymanski DC, Bissonnette M, Khare S. Cancers; 12(11):1-3.

Date published: November 1, 2020
Featured in this article: Shuai Zeng, Trupti Joshi.

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A new domestic cat genome assembly based on long sequence reads empowers feline genomic medicine and identifies a novel gene for dwarfism. Buckley RM, Davis BW, Brashear WA, Farias FHG, Kuroki K, Graves T, Hillier LW, Kremitzki M, Li G, Middleton RP, Minx P, Tomlinson C, Lyons LA, Murphy WJ, Warren WC. PLoS Genetics; 16(10):e1008926.

Date published: October 22, 2020
Featured in this article: Wes Warren.

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The NS1 protein of the parvovirus MVM Aids in the localization of the viral genome to cellular sites of DNA damage. Majumder K, Boftsi M, Whittle FB, Wang J, Fuller MS, Joshi T, Pintel DJ. PLoS Pathogens; 16(10):e1009002.

Date published: October 16, 2020
Featured in this article: Maria Boftsi, Juexin Wang, Trupti Joshi.

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Optimized Pseudotyping Conditions for the SARS-COV-2 Spike Glycoprotein. Johnson MC, Lyddon TD, Suarez R, Salcedo B, LePique M, Graham M, Ricana C, Robinson C, Ritter DG. Journal of Virology; 94(21):e01062-20.

Date published: October 14, 2020
Featured in this article: Marc Johnson, Terri Lyddon.

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Aptamers with Tunable Affinity Enable Single-Molecule Tracking and Localization of Membrane Receptors on Living Cancer Cells. Delcanale P, Porciani D, Pujals S, Jurkevich A, Chetrusca A, Tawiah KD, Burke DH, Albertazzi L. Angewandte Chemie - International Edition; 59(42):18546-18555.

Date published: October 12, 2020
Featured in this article: David Porciani, Alexander Jurkevich, Donald Burke-Agüero.

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Deletion of maize RDM4 suggests a role in endosperm maturation as well as vegetative and stress-responsive growth. Jia S, Yobi A, Naldrett MJ, Alvarez S, Angelovici R, Zhang C, Holding DR. Journal of Experimental Botany; 71(19):5880-5895.

Date published: October 7, 2020
Featured in this article: Abou Yobi, Ruthie Angelovici.

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Intra-Strain Genetic Variation of Platyfish (Xiphophorus maculatus) Strains Determines Tumorigenic Trajectory. Lu Y, Olivas T, Boswell M, Boswell W, Warren WC, Schartl M, Walter RB. Frontiers in Genetics; 11:562594.

Date published: October 6, 2020
Featured in this article: Wes Warren.

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Label-Free Quantitative Phosphoproteomics Reveals Signaling Dynamics Involved in Embryogenic Competence Acquisition in Sugarcane. Almeida FA, Passamani LZ, Santa-Catarina C, Mooney BP, Thelen JJ, Silveira V. Journal of Proteome Research; 19(10):4145-4157.

Date published: October 2, 2020
Featured in this article: Brian Mooney, Jay Thelen.

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MYB30 orchestrates systemic reactive oxygen signaling and plant acclimation. Fichman Y, Zandalinas SI, Sengupta S, Burks D, Myers RJ Jr, Azad RK, Mittler R. Plant Physiology; 184(2):666-675.

Date published: October 1, 2020
Featured in this article: Yosef Fichman, Ron Mittler.

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Noninvasive Live ROS Imaging of Whole Plants Grown in Soil. Fichman Y, Mittler R. Trends in Plant Science; 25(10):1052-1053.

Date published: October 1, 2020
Featured in this article: Yosef Fichman, Ron Mittler.

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P2Y2 receptors mediate nucleotide-induced EGFR phosphorylation and stimulate proliferation and tumorigenesis of head and neck squamous cell carcinoma cell lines. Woods LT, Jasmer KJ, Muñoz Forti K, Shanbhag VC, Camden JM, Erb L, Petris MJ, Weisman GA. Oral Oncology; 109:104808.

Date published: October 1, 2020
Featured in this article: Lucas Woods, Kimberly Jasmer, Kevin Muñoz Forti, Vinit Shanbhag, Jean Camden, Michael Petris, Gary Weisman.

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Leveraging systematic functional analysis to benchmark an in silico framework distinguishes driver from passenger MEK mutants in cancer. Hanrahan AJ, Sylvester BE, Chang MT, Elzein A, Gao J, Han W, Liu Y, Xu D, Gao SP, Gorelick AN, Jones AM, Kiliti AJ, Nissan MH, Nimura CA, Poteshman AN, Yao Z, Gao Y, Hu W, Wise HC, Gavrila EI, Shoushtari AN, Tiwari S, Viale A, Abdel-Wahab O, Merghoub T, Berger MF, Rosen N, Taylor BS, Solit DB. Cancer Research; 80(19):4233-4243.

Date published: October 1, 2020
Featured in this article: Dong Xu.

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Intraoperative visualisation and treatment of salivary glands in Sjögren’s syndrome by contrast-enhanced ultrasound sialendoscopy (CEUSS): protocol for a phase I single-centre, single-arm, exploratory study. Karagozoglu KH, Helder M, Bot J, Kamp O, Forouzanfar T, Brand HS, Cha S, Weisman G, Bartelink I, Vissink A, Jager DHJ. BMJ open; 10(9):e033542.

Date published: September 30, 2020
Featured in this article: Gary Weisman.

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FMO1 Is Involved in Excess Light Stress-Induced Signal Transduction and Cell Death Signaling. Czarnocka W, Fichman Y, Bernacki M, Różańska E, Sańko-Sawczenko I, Mittler R, Karpiński S. Cells; 9(10).

Date published: September 24, 2020
Featured in this article: Yosef Fichman, Ron Mittler.

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AAV9-DOK7 gene therapy reduces disease severity in Smn2B/- SMA model mice. Kaifer KA, Villalón E, Smith CE, Simon ME, Marquez J, Hopkins AE, Morcos TI, Lorson CL. Biochemical and Biophysical Research Communications; 530(1):107-114.

Date published: September 10, 2020
Featured in this article: Caley Smith, Christian Lorson.

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HAPPI GWAS: Holistic analysis with pre- And post-integration GWAS. Slaten ML, Chan YO, Shrestha V, Lipka AE, Angelovici R. Bioinformatics; 36(17):4655-4657.

Date published: September 1, 2020
Featured in this article: Yen On Chan, Marianne Slaten, Ruthie Angelovici.

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Limited cross-protection provided by prior infection contributes to high prevalence of influenza D viruses in cattle. Wan X-F, Ferguson L, Oliva J, Rubrum A, Eckard L, Zhang X, Woolums AR, Lion A, Meyer G, Murakami S, Ma W, Horimoto T, Webby R, Ducatez MF, Epperson W. Journal of Virology; 94(18):e00240-20.

Date published: September 1, 2020
Featured in this article: XiuFeng “Henry” Wan.

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Measuring Site-specific Glycosylation Similarity between Influenza a Virus Variants with Statistical Certainty. Chang D, Hackett WE, Zhong L, Wan X-F, Zaia J. Molecular and Cellular Proteomics; 19(9):1533-1545.

Date published: September 1, 2020
Featured in this article: XiuFeng “Henry” Wan.

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How oncogenic mutations activate human MAP kinase 1 (MEK1): a molecular dynamics simulation study. Liu Y, Zhu J, Guo X, Huang T, Han J, Gao J, Xu D, Han W. Journal of Biomolecular Structure and Dynamics; 38(13):3942-3958.

Date published: September 1, 2020
Featured in this article: Dong Xu.

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Primate lentiviruses require Inositol hexakisphosphate (IP6) or inositol pentakisphosphate (IP5) for the production of viral particles. Ricana CL, Johnson MC, Lyddon TD, Dick RA. PLoS Pathogens; 16(8):e1008646.

Date published: August 1, 2020
Featured in this article: Marc Johnson, Terri Lyddon.

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Coordinated systemic stomatal responses in soybean. Zandalinas SI, Cohen IH, Fritschi FB, Mittler R. Plant Physiology; 183(4):1428-1431.

Date published: August 1, 2020
Featured in this article: Ron Mittler.

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Phylogeny and multiple independent whole-genome duplication events in the Brassicales. Mabry ME, Brose JM, Blischak PD, Sutherland B, Dismukes WT, Bottoms CA, Edger PP, Washburn JD, An H, Hall JC, McKain MR, Al-Shehbaz I, Barker MS, Schranz ME, Conant GC, Pires JC. American Journal of Botany; 107(8):1148-1164.

Date published: August 1, 2020
Featured in this article: Hong An, J. Chris Pires.

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Evolution of Lomandroideae: Multiple origins of polyploidy and biome occupancy in Australia. Gunn BF, Murphy DJ, Walsh NG, Conran JG, Pires JC, Macfarlane TD, Birch JL. Molecular Phylogenetics and Evolution; 149:106836.

Date published: August 1, 2020
Featured in this article: J. Chris Pires.

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Upregulated proteoglycan-related signaling pathways in fluid flow shear stress-treated podocytes. Srivastava T, Joshi T, Jiang Y, Heruth DP, Rezaiekhaligh MH, Novak J, Staggs VS, Alon US, Garola RE, El-Meanawy A, McCarthy ET, Zhou J, Boinpelly VS, Sharma R, Savin VJ, Sharma M. American Journal of Physiology - Renal Physiology; 319(2):F312-F322.

Date published: August 1, 2020
Featured in this article: Trupti Joshi, Yuexu Jiang.

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Metabolomic profiling of wild-type and mutant soybean root nodules using laser-ablation electrospray ionization mass spectrometry reveals altered metabolism. Agtuca BJ, Stopka SA, Evans S, Samarah L, Liu Y, Xu D, Stacey MG, Koppenaal DW, Paša-Tolić L, Anderton CR, Vertes A, Stacey G. Plant Journal; 103(5):1937-1958.

Date published: August 1, 2020
Featured in this article: Dong Xu, Minviluz (Bing) Stacey, Gary Stacey.

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Proteomic and bioinformatic profiling of transporters in higher plant mitochondria. Møller IM, Shyama Prasad Rao R, Jiang Y, Thelen JJ, Xu D. Biomolecules; 10(8):1-13.

Date published: August 1, 2020
Featured in this article: Jay Thelen, Dong Xu.

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Comprehensive N- and O-glycosylation mapping of human coagulation factor V. Ma C, Liu D, Li D, Zhang J, Xu X-Q, Zhu H, Wan X-F, Miao CH, Konkle BA, Onigman P, Xiao W, Li L. Journal of Thrombosis and Haemostasis; 18(8):1884-1892.

Date published: August 1, 2020
Featured in this article: XiuFeng “Henry” Wan.

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Transport and fate of human expiratory droplets – A modeling approach. Wang B, Wu H, Wan X-F. Physics of Fluids; 32(8):083307.

Date published: August 1, 2020
Featured in this article: XiuFeng “Henry” Wan.

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A novel swine sex-linked marker and its application across different mammalian species. Lucas CG, Spate AM, Samuel MS, Spate LA, Warren WC, Prather RS, Wells KD. Transgenic Research; 29(4):395-407.

Date published: August 1, 2020
Featured in this article: Wes Warren.

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Neuronal ceroid lipofuscinosis in a domestic cat associated with a DNA sequence variant that creates a premature stop codon in CLN6. Katz ML, Buckley RM, Biegen V, O'Brien DP, Johnson GC, Warren WC, Lyons LA. G3: Genes, Genomes, Genetics; 10(8):2741-2751.

Date published: August 1, 2020
Featured in this article: Wes Warren.

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The BADC and BCCP subunits of chloroplast acetyl-CoA carboxylase sense the pH changes of the light-dark cycle. Ye Y, Fulcher YG, Sliman DJ, Day MT, Schroeder MJ, Koppisetti RK, Bates PD, Thelen JJ, van Doren SR. Journal of Biological Chemistry; 295(29):9901-9916.

Date published: July 17, 2020
Featured in this article: Jay Thelen.

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Untangling the ties that bind different systemic signals in plants. Fichman Y, Zandalinas SI, Mittler R. Science Signaling; 13(640):eabb9505.

Date published: July 14, 2020
Featured in this article: Yosef Fichman, Ron Mittler.

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Current status of the multinational Arabidopsis community. Parry G, Provart NJ, Brady SM, Uzilday B, Adams K, Araújo W, Aubourg S, Baginsky S, Bakker E, Bärenfaller K, Batley J, Beale M, Beilstein M, Belkhadir Y, Mendel G, Berardini T, Bergelson J, Blanco-Herrera F, Brady S, Braun H-P, Briggs S, Brownfield L, Cardarelli M, Castellanos-Uribe M, Coruzzi G, Dassanayake M, De Jaeger G, Dilkes B, Doherty C, Ecker J, Edger P, Edwards D, El Kasmi F, Eriksson M, Exposito-Alonso M, Falter-Braun P, Fernie A, Ferro M, Fiehn O, Friesner J, Greenham K, Guo Y, Hamann T, Hancock A, Hauser M-T, Heazlewood J, Ho C-H, Hõrak H, Huala E, Hwang I, Iuchi S, Jaiswal P, Jakobson L, Jiang Y, Jiao Y, Jones A, Kadota Y, Khurana J, Kliebenstein D, Knee E, Kobayashi M, Koch M, Krouk G, Larson T, Last R, Lepiniec L, Li S, Lurin C, Lysak M, Maere S, Malinowski R, Maumus F, May S, Mayer K, Mendoza-Cozatl D, Mendoza-Poudereux I, Micol JL, Millar H, Mock H-P, Mukhtar K, Mukhtar S, Murcha M, Nakagami H, Nakamura Y, Nicolov L, Nikolau B, Nowack M, Nunes-Nesi A, Palmgren M, Parry G, Patron N, Peck S, Pedmale U, Perrot-Rechenmann C, Pieruschka R, Pío-Beltrán J, Pires JC, Provart N, Rajjou L, Reiser L, Rhee S, Rigas S, Rolland N, Romanowski A, Savaldi-Goldstein S, Schmitz R, Schulze W, Seki M, Shimizu KK, Slotkin K, Small I, Somers D, Sozzani R, Spillane C, Srinivasan R, Taylor N, Tello-Ruiz M-K, Thelen J, Tohge T, Town C, Toyoda T, Uzilday B, Walley J, Ware D, Weckwerth W, Whitelegge J, Wienkoop S, Wright C, Wrzaczek M, Yamazaki M, Yanovsky M, Žárský V, Zhong X, Van De Peer Y, Van Wijk K, Von Gillhaussen P, The Multinational Arabidopsis Steering Committee. Plant Direct; 4(7):e00248.

Date published: July 1, 2020
Featured in this article: David Mendoza-Cózatl, Scott Peck, J. Chris Pires, Jay Thelen.

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Arabidopsis lectin receptor kinase P2K2 is a second plant receptor for extracellular atp and contributes to innate immunity. Pham AQ, Cho S-H, Nguyen CT, Stacey G. Plant Physiology; 183(3):1364-1375.

Date published: July 1, 2020
Featured in this article: Gary Stacey.

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Protein Precipitation to Remove Carbohydrates that Interfere in Protein-Bound Tryptophan Quantification in Soybean Seeds. Lei Z, Kumar S, Sarma SJ, Kumar R, Sumner BW, Stacey MG, Sumner LW. Journal of Analysis and Testing; 4(3):238-247.

Date published: July 1, 2020
Featured in this article: Zhentian Lei, Saurav Sarma, Barbara Sumner, Minviluz (Bing) Stacey, Lloyd Sumner.

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Two New Heuristic Methods for Protein Model Quality Assessment. Wang W, Wang J, Xu D, Shang Y. IEEE/ACM Transactions on Computational Biology and Bioinformatics; 17(4):1430-1439.

Date published: July 1, 2020
Featured in this article: Juexin Wang, Dong Xu.

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Integration of genomics, metagenomics, and metabolomics to identify interplay between susceptibility alleles and microbiota in adenoma initiation. Moskowitz JE, Doran AG, Lei Z, Busi SB, Hart ML, Franklin CL, Sumner LW, Keane TM, Amos-Landgraf JM. BMC Cancer; 20(1):600.

Date published: June 29, 2020
Featured in this article: Zhentian Lei, Lloyd Sumner.

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Production and Selection of Quality Protein Popcorn Hybrids Using a Novel Ranking System and Combining Ability Estimates. Parsons L, Ren Y, Yobi A, Hurst P, Angelovici R, Rodriguez O, Holding DR. Frontiers in Plant Science; 11:698.

Date published: June 23, 2020
Featured in this article: Abou Yobi, Ruthie Angelovici.

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Minor snRNA gene delivery improves the loss of proprioceptive synapses on SMA motor neurons. Osman EY, van Alstyne M, Yen P-F, Lotti F, Feng Z, Ling KKY, Ko C-P, Pellizzoni L, Lorson CL. JCI Insight; 5(12):e130574.

Date published: June 18, 2020
Featured in this article: Christian Lorson.

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CRISPR/Cas9-Based Gene Editing Using Egg Cell-Specific Promoters in Arabidopsis and Soybean. Zheng N, Li T, Dittman JD, Su J, Li R, Gassmann W, Peng D, Whitham SA, Liu S, Yang B. Frontiers in Plant Science; 11:800.

Date published: June 16, 2020
Featured in this article: Jianbin Su, Riqing Li, Walter Gassmann, Bing Yang.

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Systemic signaling during abiotic stress combination in plants. Zandalinas SI, Fichman Y, Devireddy AR, Sengupta S, Azad RK, Mittler R. Proceedings of the National Academy of Sciences of the United States of America; 117(24):13810-13820.

Date published: June 16, 2020
Featured in this article: Yosef Fichman, Ron Mittler.

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Genomic Origin and Diversification of the Glucosinolate MAM Locus. Abrahams RS, Pires JC, Schranz ME. Frontiers in Plant Science; 11:711.

Date published: June 4, 2020
Featured in this article: J. Chris Pires.

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Mutations in the Kinesin-2 Motor KIF3B Cause an Autosomal-Dominant Ciliopathy. Cogné B, Latypova X, Senaratne LDS, Martin L, Koboldt DC, Kellaris G, Fievet L, Le Meur G, Caldari D, Debray D, Nizon M, Frengen E, Bowne SJ, Buckley RM, Aberdein D, Alves PC, Barsh GS, Bellone RR, Bergström TF, Boyko AR, Brockman JA, Casal ML, Castelhano MG, Distl O, Dodman NH, Ellinwood NM, Fogle JE, Forman OP, Garrick DJ, Ginns EI, Häggström J, Harvey RJ, Hasegawa D, Haase B, Helps CR, Hernandez I, Hytönen MK, Kaukonen M, Kaelin CB, Kosho T, Leclerc E, Lear TL, Leeb T, Li RHL, Lohi H, Longeri M, Magnuson MA, Malik R, Mane SP, Munday JS, Murphy WJ, Pedersen NC, Rothschild MF, Rusbridge C, Shapiro B, Stern JA, Swanson WF, Terio KA, Todhunter RJ, Warren WC, Wilcox EA, Wildschutte JH, Yu Y, Cadena EL, Daiger SP, Bujakowska KM, Pierce EA, Gorin M, Katsanis N, Bézieau S, Petersen-Jones SM, Occelli LM, Lyons LA, Legeai-Mallet L, Sullivan LS, Davis EE, Isidor B. American Journal of Human Genetics; 106(6):893-904.

Date published: June 4, 2020
Featured in this article: Wes Warren.

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MGWAS uncovers Gln-glucosinolate seed-specific interaction and its role in metabolic homeostasis. Slaten ML, Yobi A, Bagaza C, Chan YO, Shrestha V, Holden S, Katz E, Kanstrup C, Lipka AE, Kliebenstein DJ, Nour-Eldin HH, Angelovici R. Plant Physiology; 183(2):483-500.

Date published: June 1, 2020
Featured in this article: Marianne Slaten, Abou Yobi, Clement Bagaza, Yen On Chan, Ruthie Angelovici.

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Sex-mediated elevation of the specialized pro-resolving lipid mediator levels in a Sjögren’s syndrome mouse model. Parashar K, Schulte F, Hardt M, Baker OJ. FASEB Journal; 34(6):7733-7744.

Date published: June 1, 2020
Featured in this article: Olga Baker.

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Rapid systemic signaling during abiotic and biotic stresses: is the ROS wave master of all trades?. Fichman Y, Mittler R. Plant Journal; 102(5):887-896.

Date published: June 1, 2020
Featured in this article: Yosef Fichman, Ron Mittler.

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Environmental factor(s) and animal vector(s) associated with atypical Aeromonas hydrophila abundance and dissemination among channel catfish ponds. Cunningham FL, Hanson-Dorr KC, Ford L, Middleton DR, Crain A, Durst L, Ware C, Griffin MJ, Mischke CC, Wan X-F, Hanson LA. Journal of the World Aquaculture Society; 51(3):750-762.

Date published: June 1, 2020
Featured in this article: XiuFeng “Henry” Wan.

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HA stabilization promotes replication and transmission of swine H1N1 gamma influenza viruses in ferrets. Hu M, Yang G, De Beauchamp J, Crumpton JC, Kim H, Li L, Wan X-F, Kercher L, Bowman AS, Webster RG, Webby RJ, Russell CJ. eLife; 9:1-23.

Date published: June 1, 2020
Featured in this article: XiuFeng “Henry” Wan.

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The sterlet sturgeon genome sequence and the mechanisms of segmental rediploidization. Du K, Stöck M, Kneitz S, Klopp C, Woltering JM, Adolfi MC, Feron R, Prokopov D, Makunin A, Kichigin I, Schmidt C, Fischer P, Kuhl H, Wuertz S, Gessner J, Kloas W, Cabau C, Iampietro C, Parrinello H, Tomlinson C, Journot L, Postlethwait JH, Braasch I, Trifonov V, Warren WC, Meyer A, Guiguen Y, Schartl M. Nature Ecology and Evolution; 4(6):841-852.

Date published: June 1, 2020
Featured in this article: Wes Warren.

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Werewolf, there wolf: Variants in hairless associated with hypotrichia and roaning in the lykoi cat breed. Buckley RM, Gandolfi B, Creighton EK, Pyne CA, Bouhan DM, Leroy ML, Senter DA, Gobble JR, Abitbol M, Lyons LA, Lyons LA, Buckley RM, Aberdein D, Garrick DJ, Munday JS, Alves PC, Barsh GS, Kaelin CB, Bellone RR, Bergström TF, Boyko AR, Brockman JA, Casal ML, Castelhano MG, Todhunter RJ, Wilcox EA, Distl O, Dodman NH, Ellinwood NM, Rothschild MF, Fogle JE, Forman OP, Ginns EI, Häggström J, Harvey RJ, Hasegawa D, Yu Y, Haase B, Helps CR, Hernandez I, Hytönen MK, Kaukonen M, Lohi H, Kosho T, Leclerc E, Lear TL, Leeb T, Li RHL, Longeri M, Magnuson MA, Malik R, Mane SP, Murphy WJ, Pedersen NC, Stern JA, Peterson-Jones SM, Rusbridge C, Shapiro B, Swanson WF, Terio KA, Warren WC, Wildschutte JH. Genes; 11(6):1-15.

Date published: June 1, 2020
Featured in this article: Wes Warren.

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A deletion in GDF7 is associated with a heritable forebrain commissural malformation concurrent with ventriculomegaly and interhemispheric cysts in cats. Yu Y, Creighton EK, Buckley RM, Lyons LA, Buckley RM, Aberdein D, Alves PC, Barsh GS, Bellone RR, Bergström TF, Boyko AR, Brockman JA, Casal ML, Castelhano MG, Distl O, Dodman NH, Ellinwood NM, Fogle JE, Forman OP, Garrick DJ, Ginns EI, Häggström J, Harvey RJ, Hasegawa D, Haase B, Helps CR, Hernandez I, Hytönen MK, Kaukonen M, Kaelin CB, Kosho T, Leclerc E, Lear TL, Leeb T, Li RHL, Lohi H, Longeri M, Magnuson MA, Malik R, Mane SP, Munday JS, Murphy WJ, Pedersen NC, Peterson-Jones SM, Rothschild MF, Rusbridge C, Shapiro B, Stern JA, Swanson WF, Terio KA, Todhunter RJ, Warren WC, Wilcox EA, Wildschutte JH, Yu Y, Lyons LA. Genes; 11(6):1-15.

Date published: June 1, 2020
Featured in this article: Wes Warren.

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Overcoming Wnt–β-catenin dependent anticancer therapy resistance in leukaemia stem cells. Perry JM, Tao F, Roy A, Lin T, He XC, Chen S, Lu X, Nemechek J, Ruan L, Yu X, Dukes D, Moran A, Pace J, Schroeder K, Zhao M, Venkatraman A, Qian P, Li Z, Hembree M, Paulson A, He Z, Xu D, Tran T-H, Deshmukh P, Nguyen CT, Kasi RM, Ryan R, Broward M, Ding S, Guest E, August K, Gamis AS, Godwin A, Sittampalam GS, Weir SJ, Li L. Nature Cell Biology; 22(6):689-700.

Date published: June 1, 2020
Featured in this article: Dong Xu.

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Single-Cell Metabolic Profiling: Metabolite Formulas from Isotopic Fine Structures in Heterogeneous Plant Cell Populations. Samarah LZ, Khattar R, Tran TH, Stopka SA, Brantner CA, Parlanti P, Veličković D, Shaw JB, Agtuca BJ, Stacey G, Paša-Tolić L, Tolić N, Anderton CR, Vertes A. Analytical Chemistry; 92(10):7289-7298.

Date published: May 19, 2020
Featured in this article: Gary Stacey.

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In Vivo Chemical Analysis of Plant Sap from the Xylem and Single Parenchymal Cells by Capillary Microsampling Electrospray Ionization Mass Spectrometry. Samarah LZ, Tran TH, Stacey G, Vertes A. Analytical Chemistry; 92(10):7299-7306.

Date published: May 19, 2020
Featured in this article: Gary Stacey.

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Endoplasmic reticulum retention and degradation of a mutation in SLC6A1 associated with epilepsy and autism. Wang J, Poliquin S, Mermer F, Eissman J, Delpire E, Wang J, Shen W, Cai K, Li B-M, Li Z-Y, Xu D, Nwosu G, Flamm C, Liao W-P, Shi Y-W, Kang J-Q. Molecular Brain; 13(1):76.

Date published: May 12, 2020
Featured in this article: Juexin Wang, Dong Xu.

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Multi-task learning sparse group lasso: A method for quantifying antigenicity of influenza A(H1N1) virus using mutations and variations in glycosylation of Hemagglutinin. Li L, Chang D, Han L, Zhang X, Zaia J, Wan X-F. BMC Bioinformatics; 21(1):1DUMM.

Date published: May 11, 2020
Featured in this article: XiuFeng “Henry” Wan.

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Elesclomol alleviates Menkes pathology and mortality by escorting Cu to cuproenzymes in mice. Guthrie LM, Soma S, Yuan S, Silva A, Zulkifli M, Snavely TC, Greene HF, Nunez E, Lynch B, de Ville C, Shanbhag V, Lopez FR, Acharya A, Petris MJ, Kim B-E, Gohil VM, Sacchettini JC. Science; 368(6491):620-625.

Date published: May 8, 2020
Featured in this article: Vinit Shanbhag, Michael Petris.

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The complex response of free and bound amino acids to water stress during the seed setting stage in Arabidopsis. Yobi A, Bagaza C, Batushansky A, Shrestha V, Emery ML, Holden S, Turner-Hissong S, Miller ND, Mawhinney TP, Angelovici R. Plant Journal; 102(4):838-855.

Date published: May 1, 2020
Featured in this article: Abou Yobi, Clement Bagaza, Ruthie Angelovici.

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Adaptive responses of amino acid metabolism to the combination of desiccation and low nitrogen availability in Sporobolus stapfianus. Yobi A, Batushansky A, Oliver MJ, Angelovici R. Planta; 249(5):1535-1549.

Date published: May 1, 2020
Featured in this article: Abou Yobi, Ruthie Angelovici.

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Sex-dependent Regeneration Patterns in Mouse Submandibular Glands. Brown CT, Nam K, Zhang Y, Qiu Y, Dean SM, Dos Santos HT, Lei P, Andreadis ST, Baker OJ. Journal of Histochemistry and Cytochemistry; 68(5):305-318.

Date published: May 1, 2020
Featured in this article: Kihoon Nam, Harim Tavares dos Santos, Olga Baker.

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Mapping the metal-catalytic site of a zinc-activated phytochelatin synthase. García-García JD, Sánchez-Thomas R, Saavedra E, Fernández-Velasco DA, Romero-Romero S, Casanova-Figueroa KI, Mendoza-Cózatl DG, Moreno-Sánchez R. Algal Research; 47:101890.

Date published: May 1, 2020
Featured in this article: David Mendoza-Cózatl.

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Feasibility of known rna polymerase inhibitors as anti-sars-cov-2 drugs. Neogi U, Hill KJ, Ambikan AT, Heng X, Quinn TP, Byrareddy SN, Sönnerborg A, Sarafianos SG, Singh K. Pathogens; 9(5):320.

Date published: May 1, 2020
Featured in this article: Thomas Quinn, Kamlendra Singh.

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Role of cytosolic, tyrosine-insensitive prephenate dehydrogenase in Medicago truncatula. Schenck CA, Westphal J, Jayaraman D, Garcia K, Wen J, Mysore KS, Ané J-M, Sumner LW, Maeda HA. Plant Direct; 4(5):e00218.

Date published: May 1, 2020
Featured in this article: Lloyd Sumner.

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Multi-targeted trehalose-6-phosphate phosphatase I harbors a novel peroxisomal targeting signal 1 and is essential for flowering and development. Kataya ARA, Elshobaky A, Heidari B, Dugassa N-F, Thelen JJ, Lillo C. Planta; 251(5):98.

Date published: May 1, 2020
Featured in this article: Jay Thelen.

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Are pangolins the intermediate host of the 2019 novel coronavirus (SARS-CoV-2)?. Liu P, Jiang J-Z, Wan X-F, Hua Y, Li L, Zhou J, Wang X, Hou F, Chen J, Zou J, Chen J. PLoS Pathogens; 16(5):e1008421.

Date published: May 1, 2020
Featured in this article: XiuFeng “Henry” Wan.

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Detecting Cancer Survival Related Gene Markers Based on Rectified Factor Network. Su L, Liu G, Wang J, Gao J, Xu D. Frontiers in Bioengineering and Biotechnology; 8:349.

Date published: April 23, 2020
Featured in this article: Dong Xu.

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Can metabolic tightening and expansion of co-expression network play a role in stress response and tolerance?. Fait A, Batushansky A, Shrestha V, Yobi A, Angelovici R. Plant Science; 293:110409.

Date published: April 1, 2020
Featured in this article: Abou Yobi, Ruthie Angelovici.

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Predictive modeling of aspirin-triggered resolvin D1 pharmacokinetics for the study of Sjögren’s syndrome. Yellepeddi VK, Baker OJ. Clinical and Experimental Dental Research; 6(2):225-235.

Date published: April 1, 2020
Featured in this article: Olga Baker.

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EPSIN1 modulates the plasma membrane abundance of FLAGELLIN SENSING2 for effective immune responses. Collins CA, LaMontagne ED, Anderson JC, Ekanayake G, Clarke AS, Bond LN, Salamango DJ, Cornish PV, Peck SC, Heese A. Plant Physiology; 182(4):1762-1775.

Date published: April 1, 2020
Featured in this article: Scott Peck.

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Independent evolution of ancestral and novel defenses in a genus of toxic plants (Erysimum, brassicaceae). Züst T, Strickler SR, Powell AF, Mabry ME, An H, Mirzaei M, York T, Holland CK, Kumar P, Erb M, Petschenka G, Gómez J-M, Perfectti F, Müller C, Pires JC, Mueller LA, Jander G. eLife; 9:e51712.

Date published: April 1, 2020
Featured in this article: Hong An, J. Chris Pires.

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Evolutionary insights into plant breeding. Turner-Hissong SD, Mabry ME, Beissinger TM, Ross-Ibarra J, Pires JC. Current Opinion in Plant Biology; 54:93-100.

Date published: April 1, 2020
Featured in this article: J. Chris Pires.

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Epha7 promotes myogenic differentiation via cell-cell contact. Arnold LL, Cecchini A, Stark DA, Ihnat J, Craigg RN, Carter A, Zino S, Cornelison DDW. eLife; 9:e53689.

Date published: April 1, 2020
Featured in this article: Alessandra 'Lale' Cecchini-Porciani, D Cornelison.

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Identification of health-promoting bioactive phenolics in black walnut using cloud-based metabolomics platform. Vu DC, Park J, Ho K-V, Sumner LW, Lei Z, Greenlief CM, Mooney B, Coggeshall MV, Lin C-H. Journal of Food Measurement and Characterization; 14(2):770-777.

Date published: April 1, 2020
Featured in this article: Lloyd Sumner, Zhentian Lei, Michael Greenlief, Brian Mooney.

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Drug Resistance Mutations Against Protease, Reverse Transcriptase and Integrase Inhibitors in People Living With HIV-1 Receiving Boosted Protease Inhibitors in South Africa. Obasa AE, Mikasi SG, Brado D, Cloete R, Singh K, Neogi U, Jacobs GB. Frontiers in Microbiology; 11:438.

Date published: March 20, 2020
Featured in this article: Kamlendra Singh.

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Binding interface and impact on protease cleavage for an RNA aptamer to HIV-1 reverse transcriptase. Nguyen PDM, Zheng J, Gremminger TJ, Qiu L, Zhang D, Tuske S, Lange MJ, Griffin PR, Arnold E, Chen S-J, Zou X, Heng X, Burke DH. Nucleic Acids Research; 48(5):2709-2722.

Date published: March 18, 2020
Featured in this article: Margaret Lange, Donald Burke-Agüero.

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Engineering the mode of morphogenetic signal presentation to promote branching from salivary gland spheroids in 3D hydrogels. Samuel RZ, Lei P, Nam K, Baker OJ, Andreadis ST. Acta Biomaterialia; 105:121-130.

Date published: March 15, 2020
Featured in this article: Kihoon Nam, Olga Baker.

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P2 Receptors as Therapeutic Targets in the Salivary Gland: From Physiology to Dysfunction. Khalafalla MG, Woods LT, Jasmer KJ, Forti KM, Camden JM, Jensen JL, Limesand KH, Galtung HK, Weisman GA. Frontiers in Pharmacology; 11:222.

Date published: March 13, 2020
Featured in this article: Lucas Woods, Kimberly Jasmer, Kevin Muñoz Forti, Jean Camden, Gary Weisman.

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From element to development: The power of the essential micronutrient boron to shape morphological processes in plants. Matthes MS, Robil JM, McSteen P. Journal of Experimental Botany; 71(5):1681-1693.

Date published: March 12, 2020
Featured in this article: Jan Lorie Robil, Paula McSteen.

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Signal transduction networks during stress combination. Zandalinas SI, Fritschi FB, Mittler R. Journal of Experimental Botany; 71(5):1734-1741.

Date published: March 12, 2020
Featured in this article: Ron Mittler.

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Plant signaling in biotic and abiotic stress. Peck S, Mittler R. Journal of Experimental Botany; 71(5):1649-1651.

Date published: March 12, 2020
Featured in this article: Scott Peck, Ron Mittler.

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The role of microRNAs in the legume-Rhizobium nitrogen-fixing symbiosis. Hoang NT, Tóth K, Stacey G. Journal of Experimental Botany; 71(5):1668-1680.

Date published: March 12, 2020
Featured in this article: Gary Stacey.

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Correction: Evidence for plant-derived xenomiRs based on a large-scale analysis of public small RNA sequencing data from human samples (PLOS ONE (2019) 14:10 (e0224537) DOI: 10.1371/journal.pone.0224537). Zhao Q, Liu Y, Zhang N, Hu M, Zhang H, Joshi T, Xu D. PLoS ONE; 15(3):e0230146.

Date published: March 11, 2020
Featured in this article: Trupti Joshi, Dong Xu.

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Identification and Quantification of Bioactive Molecules Inhibiting Pro-inflammatory Cytokine Production in Spent Coffee Grounds Using Metabolomics Analyses. Ho K-V, Schreiber KL, Park J, Vo PH, Lei Z, Sumner LW, Brown CR, Lin C-H. Frontiers in Pharmacology; 11:229.

Date published: March 6, 2020
Featured in this article: Zhentian Lei, Lloyd Sumner.

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Bisphenol A and bisphenol S disruptions of the mouse placenta and potential effects on the placenta-brain axis. Mao J, Jain A, Denslow ND, Nouri M-Z, Chen S, Wang T, Zhu N, Koh J, Sarma SJ, Sumner BW, Lei Z, Sumner LW, Bivens NJ, Michael Roberts R, Tuteja G, Rosenfeld CS. Proceedings of the National Academy of Sciences of the United States of America; 117(9):4642-4652.

Date published: March 3, 2020
Featured in this article: Jiude Mao, Saurav Sarma, Barbara Sumner, Zhentian Lei, Lloyd Sumner, Nathan Bivens, Michael Roberts.

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Tumor-cell–macrophage fusion cells as liquid biomarkers and tumor enhancers in cancer. Manjunath Y, Porciani D, Mitchem JB, Suvilesh KN, Avella DM, Kimchi ET, Staveley-o’carroll KF, Burke DH, Li G, Kaifi JT. International Journal of Molecular Sciences; 21(5):1872.

Date published: March 1, 2020
Featured in this article: David Porciani, Donald Burke-Agüero.

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Changes in mammalian copper homeostasis during microbial infection. Culbertson EM, Khan AA, Muchenditsi A, Lutsenko S, Sullivan DJ, Petris MJ, Cormack BP, Culotta VC. Metallomics; 12(3):416-426.

Date published: March 1, 2020
Featured in this article: Aslam Khan, Michael Petris.

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Expression of a dominant-negative AtNEET-H89C protein disrupts iron–sulfur metabolism and iron homeostasis in Arabidopsis. Zandalinas SI, Song L, Sengupta S, McInturf SA, Grant DG, Marjault H-B, Castro-Guerrero NA, Burks D, Azad RK, Mendoza-Cozatl DG, Nechushtai R, Mittler R. Plant Journal; 101(5):1152-169.

Date published: March 1, 2020
Featured in this article: Norma Castro-Guerrero, David Mendoza-Cózatl, Ron Mittler.

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Enhanced CXCR4 expression associates with increased gene body 5-hydroxymethylcytosine modification but not decreased promoter methylation in colorectal cancer. Stuckel AJ, Zhang W, Zhang X, Zeng S, Dougherty U, Mustafi, Zhang Q, Perreand E, Khare T, Joshi T, West-Szymanski DC, Bissonnette M, Khare S. Cancers; 12(3):539.

Date published: March 1, 2020
Featured in this article: Shuai Zeng, Trupti Joshi.

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Nontargeted fecal metabolomics: An emerging tool to probe the role of the gut microbiome in host health. Sarma SJ, Lei Z, Rosenfeld CS, Ericsson A, Sumner LW. Bioanalysis; 12(6):351-353.

Date published: March 1, 2020
Featured in this article: Saurav Sarma, Zhentian Lei, Lloyd Sumner.

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A self-attention based message passing neural network for predicting molecular lipophilicity and aqueous solubility. Tang B, Kramer ST, Fang M, Qiu Y, Wu Z, Xu D. Journal of Cheminformatics; 12(1):15.

Date published: February 21, 2020
Featured in this article: Dong Xu.

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IMPRes-Pro: A high dimensional multiomics integration method for in silico hypothesis generation. Jiang Y, Wang D, Xu D, Joshi T. Methods; 173:16-23.

Date published: February 15, 2020
Featured in this article: Yuexu Jiang, Duolin Wang, Dong Xu, Trupti Joshi.

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MUFold-SSW: A new web server for predicting protein secondary structures, torsion angles and turns. Fang C, Li Z, Xu D, Shang Y. Bioinformatics; 36(4):1293-1295.

Date published: February 15, 2020
Featured in this article: Dong Xu.

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Corrigendum: Characterization of the Spatial and Temporal Expression of Two Soybean miRNAs Identifies SCL6 as a Novel Regulator of Soybean Nodulation (Frontiers in Plant Science, (2019), 10, 10.3389/fpls.2019.00475). Hossain MS, Hoang NT, Yan Z, Tóth K, Meyers BC, Stacey G. Frontiers in Plant Science; 10:1692.

Date published: February 12, 2020
Featured in this article: Gary Stacey.

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The quail genome: Insights into social behaviour, seasonal biology and infectious disease response. Morris KM, Hindle MM, Boitard S, Burt DW, Danner AF, Eory L, Forrest HL, Gourichon D, Gros J, Hillier LW, Jaffredo T, Khoury H, Lansford R, Leterrier C, Loudon A, Mason AS, Meddle SL, Minvielle F, Minx P, Pitel F, Seiler JP, Shimmura T, Tomlinson C, Vignal A, Webster RG, Yoshimura T, Warren WC, Smith J. BMC Biology; 18(1):14.

Date published: February 12, 2020
Featured in this article: Wes Warren.

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Assessment of a18f-phenylboronic acid radiotracer for imaging boron in maize. Housh AB, Matthes MS, Gerheart A, Wilder SL, Kil K-E, Schueller M, Guthrie JM, McSteen P, Ferrieri R. International Journal of Molecular Sciences; 21(3):976.

Date published: February 1, 2020
Featured in this article: Paula McSteen.

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A 50K SNP array reveals genetic structure for bald eagles (Haliaeetus leucocephalus). Judkins ME, Couger BM, Warren WC, Van Den Bussche RA. Conservation Genetics; 21(1):65-76.

Date published: February 1, 2020
Featured in this article: Wes Warren.

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Structures of immature EIAV Gag lattices reveal a conserved role for IP6 in lentivirus assembly. Dick RA, Xu C, Morado DR, Kravchuk V, Ricana CL, Lyddon TD, Broad AM, Feathers JR, Johnson MC, Vogt VM, Perilla JR, Briggs JAG, Schur FKM. PLoS Pathogens; 16(1):e1008277.

Date published: January 27, 2020
Featured in this article: Terri Lyddon, Marc Johnson.

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Using Tomato Recombinant Lines to Improve Plant Tolerance to Stress Combination Through a More Efficient Nitrogen Metabolism. Lopez-Delacalle M, Camejo DM, García-Martí M, Nortes PA, Nieves-Cordones M, Martínez V, Rubio F, Mittler R, Rivero RM. Frontiers in Plant Science; 10:1702.

Date published: January 17, 2020
Featured in this article: Ron Mittler.

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Security-aware Resource Brokering for Bioinformatics Workflows across Federated Multi-cloud Infrastructures. Nguyen M, Debroy S, Calyam P, Lyu Z, Joshi T. ACM International Conference Proceeding Series; F165625:3369791.

Date published: January 4, 2020
Featured in this article: Zhen Lyu, Trupti Joshi.

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Proteomic and Metabolomic Analysis of Azospirillum brasilense ntrC Mutant under High and Low Nitrogen Conditions. Kukolj C, Pedrosa FO, De Souza GA, Sumner LW, Lei Z, Sumner B, Do Amaral FP, Juexin W, Trupti J, Huergo LF, Monteiro RA, Valdameri G, Stacey G, De Souza EM. Journal of Proteome Research; 19(1):92-105.

Date published: January 3, 2020
Featured in this article: Lloyd Sumner, Zhentian Lei, Barbara Sumner, Juexin Wang, Trupti Joshi, Gary Stacey.

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Therapeutic peptide delivery: Via aptamer-displaying, disulfide-linked peptide amphiphile micelles. Smith JD, Cardwell LN, Porciani D, Nolla A, Cornelison BT, Schulte MC, Gallazzi F, Burke DH, Daniels MA, Ulery BD. Molecular Systems Design and Engineering; 5(1):269-283.

Date published: January 1, 2020
Featured in this article: David Porciani, Fabio Gallazzi, Donald Burke-Agüero.

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Coordinated and rapid whole-plant systemic stomatal responses. Devireddy AR, Arbogast J, Mittler R. New Phytologist; 225(1):21-25.

Date published: January 1, 2020
Featured in this article: Ron Mittler.

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A revised model for the role of GacS/GacA in regulating type III secretion by Pseudomonas syringae pv. tomato DC3000. O’Malley MR, Chien C-F, Peck SC, Lin N-C, Anderson JC. Molecular Plant Pathology; 21(1):139-144.

Date published: January 1, 2020
Featured in this article: Scott Peck.

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A dynamic programing approach to integrate gene expression data and network information for pathway model generation. Jiang Y, Liang Y, Wang D, Xu D, Joshi T. Bioinformatics; 36(1):169-176.

Date published: January 1, 2020
Featured in this article: Yuexu Jiang, Duolin Wang, Dong Xu, Trupti Joshi.

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Hypothalamic transcriptome of tame and aggressive silver foxes (Vulpes vulpes) identifies gene expression differences shared across brain regions. Rosenfeld CS, Hekman JP, Johnson JL, Lyu Z, Ortega MT, Joshi T, Mao J, Vladimirova AV, Gulevich RG, Kharlamova AV, Acland GM, Hecht EE, Wang X, Clark AG, Trut LN, Behura SK, Kukekova AV. Genes, Brain and Behavior; 19(1):e12614.

Date published: January 1, 2020
Featured in this article: Zhen Lyu, Trupti Joshi, Jiude Mao.

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Mice lacking uterine enhancer of zeste homolog 2 have transcriptomic changes associated with uterine epithelial proliferation. Mesa AM, Mao J, Nanjappa MK, Medrano TI, Tevosian S, Yu F, Kinkade J, Lyu Z, Liu Y, Joshi T, Wang D, Rosenfeld CS, Cooke PS. Physiological Genomics; 52(2):81-95.

Date published: January 1, 2020
Featured in this article: Jiude Mao, Jessica Kinkade, Zhen Lyu, Trupti Joshi, Duolin Wang.

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Inductive inference of gene regulatory network using supervised and semi-supervised graph neural networks. Wang J, Ma A, Ma Q, Xu D, Joshi T. Computational and Structural Biotechnology Journal; 18:3335-3343.

Date published: January 1, 2020
Featured in this article: Juexin Wang, Dong Xu, Trupti Joshi.

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Dysregulation in Akt/mTOR/HIF-1 signaling identified by proteo-transcriptomics of SARS-CoV-2 infected cells. Appelberg S, Gupta S, Akusjärvi SS, Ambikan AT, Mikaeloff F, Saccon E, Végvári Á, Benfeitas R, Sperk M, Ståhlberg M, Krishnan S, Singh K, Penninger JM, Mirazimi A, Neogi U. Emerging Microbes and Infections; 1748-1760.

Date published: January 1, 2020
Featured in this article: Kamlendra Singh.

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In-situ metabolomic analysis of Setaria viridis roots colonized by beneficial endophytic bacteria. Agtuca BJ, Stopka SA, Tuleski TR, Do Amaral FP, Evan S, Liu Y, Xu D, Monteiro RA, Koppenaal DW, Paša-Tolić L, Anderton CR, Vertes A, Stacey G. Molecular Plant-Microbe Interactions; 33(2):272-283.

Date published: January 1, 2020
Featured in this article: Dong Xu, Gary Stacey.

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Herbaspirillum rubrisubalbicans as a phytopathogenic model to study the immune system of Sorghum bicolor. Tuleski TR, Kimball J, Do Amaral FP, Pereira TP, Tadra-Sfeir MZ, De Oliveira Pedrosa F, De Souza EM, Balint-Kurti P, Monteiro RA, Stacey G. Molecular Plant-Microbe Interactions; 33(2):235-246.

Date published: January 1, 2020
Featured in this article: Gary Stacey.

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Generation of a collision cross section library for multi-dimensional plant metabolomics using UHPLC-trapped ion mobility-MS/MS. Schroeder M, Meyer SW, Heyman HM, Barsch A, Sumner LW. Metabolites; 10(1):13.

Date published: January 1, 2020
Featured in this article: Lloyd Sumner.

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Allelopathic potential of rice and identification of published allelochemicals by cloud-based metabolomics platform. Ho TL, Nguyen TTC, Vu DC, Nguyen NY, Nguyen TTT, Phong TNH, Nguyen CT, Lin C-H, Lei Z, Sumner LW, Le VV. Metabolites; 10(6):1-20.

Date published: January 1, 2020
Featured in this article: Zhentian Lei, Lloyd Sumner.

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Inferring seasonal infection risk at population and regional scales from serology samples. Wilber MQ, Webb CT, Cunningham FL, Pedersen K, Wan X-F, Pepin KM. Ecology; 101(1):e02882.

Date published: January 1, 2020
Featured in this article: XiuFeng “Henry” Wan.

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A deep dense inception network for protein beta-turn prediction. Fang C, Shang Y, Xu D. Proteins: Structure, Function and Bioinformatics; 88(1):143-151.

Date published: January 1, 2020
Featured in this article: Dong Xu.

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Fuzzified Image Enhancement for Deep Learning in Iris Recognition. Liu M, Zhou Z, Shang P, Xu D. IEEE Transactions on Fuzzy Systems; 28(1):92-99.

Date published: January 1, 2020
Featured in this article: Dong Xu.

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Artificial intelligence-driven structurization of diagnostic information in free-text pathology reports. Giannaris P, Al-Taie Z, Kovalenko M, Thanintorn N, Kholod O, Innokenteva Y, Coberly E, Frazier S, Laziuk K, Popescu M, Shyu C-R, Xu D, Hammer R, Shin D. Journal of Pathology Informatics; 11(1):4.

Date published: January 1, 2020
Featured in this article: Dong Xu.

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An Improved Topology Prediction of Alpha-Helical Transmembrane Protein Based on Deep Multi-Scale Convolutional Neural Network. Yang Y, Yu J, Liu Z, Wang X, Wang H, Ma Z, Xu D. IEEE/ACM Transactions on Computational Biology and Bioinformatics; 1-10.

Date published: January 1, 2020
Featured in this article: Dong Xu.

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Transporters and ascorbate–glutathione metabolism for differential cadmium accumulation and tolerance in two contrasting willow genotypes. Han X, Zhang Y, Yu M, Zhang J, Xu D, Lu Z, Qiao G, Qiu W, Zhuo R. Tree Physiology; 40(8):1126-1142.

Date published: January 1, 2020
Featured in this article: Dong Xu.

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MU-PseUDeep: A deep learning method for prediction of pseudouridine sites. Khan SM, He F, Wang D, Chen Y, Xu D. Computational and Structural Biotechnology Journal; 18:1877-1883.

Date published: January 1, 2020
Featured in this article: Dong Xu.

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2019

Knowledge Base Commons (KBCommons) v1.1: A universal framework for multi-omics data integration and biological discoveries. Zeng S, Lyu Z, Narisetti SRK, Xu D, Joshi T. BMC Genomics; 20:947.

Date published: December 20, 2019
Featured in this article: Shuai Zeng, Zhen Lyu, Dong Xu, Trupti Joshi.

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Development of a novel severe mouse model of spinal muscular atrophy with respiratory distress type 1: FVB-nmd. Shababi M, Smith CE, Kacher M, Alrawi Z, Villalón E, Davis D, Bryda EC, Lorson CL. Biochemical and Biophysical Research Communications; 520(2):341-346.

Date published: December 3, 2019
Featured in this article: Caley Smith, Mona Kacher, Christian Lorson.

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Using cell sheets to regenerate mouse submandibular glands. Nam K, Kim K, Dean SM, Brown CT, Davis RS, Okano T, Baker OJ. npj Regenerative Medicine; 4(1):16.

Date published: December 1, 2019
Featured in this article: Kihoon Nam, Olga Baker.

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Diphtheria Toxin A-Resistant Cell Lines Enable Robust Production and Evaluation of DTA-Encoding Lentiviruses. Lange MJ, Lyddon TD, Johnson MC. Scientific Reports; 9(1):8985.

Date published: December 1, 2019
Featured in this article: Margaret Lange, Terri Lyddon, Marc Johnson.

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Functional characterization of SMN evolution in mouse models of SMA. Osman EY, Bolding MR, Villalón E, Kaifer KA, Lorson ZC, Tisdale S, Hao Y, Conant GC, Pires JC, Pellizzoni L, Lorson CL. Scientific Reports; 9(1):9472.

Date published: December 1, 2019
Featured in this article: J. Chris Pires, Christian Lorson.

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Intraperitoneal delivery of a novel drug‐like compound improves disease severity in severe and intermediate mouse models of Spinal Muscular Atrophy. Osman EY, Rietz A, Kline RA, Cherry JJ, Hodgetts KJ, Lorson CL, Androphy EJ. Scientific Reports; 9(1):1633.

Date published: December 1, 2019
Featured in this article: Christian Lorson.

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4-Coumarate 3-hydroxylase in the lignin biosynthesis pathway is a cytosolic ascorbate peroxidase. Barros J, Escamilla-Trevino L, Song L, Rao X, Serrani-Yarce JC, Palacios MD, Engle N, Choudhury FK, Tschaplinski TJ, Venables BJ, Mittler R, Dixon RA. Nature Communications; 10(1):1994.

Date published: December 1, 2019
Featured in this article: Ron Mittler.

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Comparative Phosphoproteomic Analysis Reveals a Decay of ABA Signaling in Barley Embryos during After-Ripening. Ishikawa S, Barrero JM, Takahashi F, Nakagami H, Peck SC, Gubler F, Shinozaki K, Umezawa T. Plant and Cell Physiology; 60(12):2758-2768.

Date published: December 1, 2019
Featured in this article: Scott Peck.

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Adipocyte-specific disruption of ATPase copper transporting α in mice accelerates lipoatrophy. Tao C, Wang Y, Zhao Y, Pan J, Fan Y, Liang X, Cao C, Zhao J, Petris MJ, Li K, Wang Y. Diabetologia; 62(12):2340-2353.

Date published: December 1, 2019
Featured in this article: Michael Petris.

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Transcriptome and organellar sequencing highlights the complex origin and diversification of allotetraploid Brassica napus. An H, Qi X, Gaynor ML, Hao Y, Gebken SC, Mabry ME, McAlvay AC, Teakle GR, Conant GC, Barker MS, Fu T, Yi B, Pires JC. Nature Communications; 10(1):2878.

Date published: December 1, 2019
Featured in this article: Hong An, J. Chris Pires.

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Transcriptomics Analysis Reveals New Insights into the Roles of Notch1 Signaling on Macrophage Polarization. Hans CP, Sharma N, Sen S, Zeng S, Dev R, Jiang Y, Mahajan A, Joshi T. Scientific Reports; 9(1):7999.

Date published: December 1, 2019
Featured in this article: Sidharth Sen, Shuai Zeng, Yuexu Jiang, Trupti Joshi.

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Construction and comparison of three reference-quality genome assemblies for soybean. Valliyodan B, Cannon SB, Bayer PE, Shu S, Brown AV, Ren L, Jenkins J, Chung CYL, Chan T-E, Daum CG, Plott C, Hastie A, Baruch K, Barry KW, Huang W, Patil G, Varshney RK, Hu H, Batley J, Yuan Y, Song Q, Stupar RM, Goodstein DM, Stacey G, Lam H-M, Jackson SA, Schmutz J, Grimwood J, Edwards D, Nguyen HT. Plant Journal; 100(5):1066-1082.

Date published: December 1, 2019
Featured in this article: Gary Stacey.

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Identification of QTL for Target Leaf Spot resistance in Sorghum bicolor and investigation of relationships between disease resistance and variation in the MAMP response. Kimball J, Cui Y, Chen D, Brown P, Rooney WL, Stacey G, Balint-Kurti PJ. Scientific Reports; 9(1):18285.

Date published: December 1, 2019
Featured in this article: Yaya Cui, Gary Stacey.

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The neuraminidase of A(H3N2) influenza viruses circulating since 2016 is antigenically distinct from the A/Hong Kong/4801/2014 vaccine strain. Wan H, Gao J, Yang H, Yang S, Harvey R, Chen Y-Q, Zheng N-Y, Chang J, Carney PJ, Li X, Plant E, Jiang L, Couzens L, Wang C, Strohmeier S, Wu WW, Shen R-F, Krammer F, Cipollo JF, Wilson PC, Stevens J, Wan X-F, Eichelberger MC, Ye Z. Nature Microbiology; 4(12):2216-2225.

Date published: December 1, 2019
Featured in this article: XiuFeng “Henry” Wan.

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Application of the Transcriptional Disease Signature (TDSs) to Screen Melanoma-Effective Compounds in a Small Fish Model. Lu Y, Boswell W, Boswell M, Klotz B, Kneitz S, Regneri J, Savage M, Mendoza C, Postlethwait J, Warren WC, Schartl M, Walter RB. Scientific Reports; 9(1):530.

Date published: December 1, 2019
Featured in this article: Wes Warren.

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Author Correction: Applications and efficiencies of the first cat 63K DNA array (Scientific Reports, (2018), 8, 1, (7024), 10.1038/s41598-018-25438-0). Gandolfi B, Alhaddad H, Abdi M, Bach LH, Creighton EK, Davis BW, Decker JE, Dodman NH, Grahn JC, Grahn RA, Haase B, Haggstrom J, Hamilton MJ, Helps CR, Kurushima JD, Lohi H, Longeri M, Malik R, Meurs KM, Montague MJ, Mullikin JC, Murphy WJ, Nilson SM, Pedersen NC, Peterson CB, Rusbridge C, Saif R, Shelton DG, Warren WC, Wasim M, Lyons LA. Scientific Reports; 9(1):4664.

Date published: December 1, 2019
Featured in this article: Wes Warren.

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Phenotype Prediction and Genome-Wide Association Study Using Deep Convolutional Neural Network of Soybean. Liu Y, Wang D, He F, Wang J, Joshi T, Xu D. Frontiers in Genetics; 10:1091.

Date published: November 22, 2019
Featured in this article: Duolin Wang, Juexin Wang, Trupti Joshi, Dong Xu.

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ESAE: Evolutionary Strategy-Based Architecture Evolution. Gu X, Meng Z, Liang Y, Xu D, Huang H, Han X, Wu C. Communications in Computer and Information Science; 1159 CCIS:193-208.

Date published: November 22, 2019
Featured in this article: Dong Xu.

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OnTimeURB: Multi-Cloud Resource Brokering for Bioinformatics Workflows. Pandey A, Lyu Z, Joshi T, Calyam P. Proceedings - 2019 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2019; 466-473.

Date published: November 18, 2019
Featured in this article: Zhen Lyu, Trupti Joshi.

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Mutational Forks: Inferring Deregulated Flow of Signal Transduction Based on Patient-Specific Mutations. Kholod O, Lyu Z, Mitchem J, Tonellato P, Joshi T, Shin D. Proceedings - 2019 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2019; 2063-2068.

Date published: November 18, 2019
Featured in this article: Zhen Lyu, Trupti Joshi.

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DMCTOP: Topology Prediction of Alpha-Helical Transmembrane Protein Based on Deep Multi-Scale Convolutional Neural Network. Wang H, Yang Y, Yu J, Wang X, Zhao D, Xu D, Sun P. Proceedings - 2019 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2019; 36-43.

Date published: November 18, 2019
Featured in this article: Dong Xu.

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Capsule Network for Predicting Zinc Binding Sites in Metalloproteins. Essien C, Wang D, Xu D. Proceedings - 2019 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2019; 2337-2341.

Date published: November 18, 2019
Featured in this article: Dong Xu.

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Extracting Molecular Entities and Their Interactions from Pathway Figures Based on Deep Learning. He F, Wang D, Innokenteva Y, Kholod O, Shin D, Xu D. Proceedings - 2019 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2019; 1191-1193.

Date published: November 18, 2019
Featured in this article: Dong Xu.

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AAV9-Stathmin1 gene delivery improves disease phenotype in an intermediate mouse model of spinal muscular atrophy. Villalón E, Kline RA, Smith CE, Lorson ZC, Osman EY, O'day S, Murray LM, Lorson CL. Human Molecular Genetics; 28(22):3742-3754.

Date published: November 15, 2019
Featured in this article: Caley Smith, Christian Lorson.

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Human-specific tandem repeat expansion and differential gene expression during primate evolution. Sulovari A, Li R, Audano PA, Porubsky D, Vollger MR, Logsdon GA, Warren WC, Pollen AA, Chaisson MJP, Eichler EE. Proceedings of the National Academy of Sciences of the United States of America; 116(46):23243-23253.

Date published: November 12, 2019
Featured in this article: Wes Warren.

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Barium chloride injures myofibers through calcium-induced proteolysis with fragmentation of motor nerves and microvessels. Morton AB, Norton CE, Jacobsen NL, Fernando CA, Cornelison DDW, Segal SS. Skeletal Muscle; 9(1):27.

Date published: November 6, 2019
Featured in this article: D Cornelison.

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Genome Editing in Plants: Exploration of Technological Advancements and Challenges. Vats S, Kumawat S, Kumar V, Patil GB, Joshi T, Sonah H, Sharma TR, Deshmukh R. Cells; 8(11).

Date published: November 4, 2019
Featured in this article: Trupti Joshi.

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DORN1/P2K1 and purino-calcium signalling in plants: Making waves with extracellular ATP. Matthus E, Sun J, Wang L, Bhat MG, Mohammad-Sidik AB, Wilkins KA, Leblanc-Fournier N, Legué V, Moulia B, Stacey G, Davies JM. Annals of Botany; 124(7):1227-1242.

Date published: November 1, 2019
Featured in this article: Gary Stacey.

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Individual-Level Antibody Dynamics Reveal Potential Drivers of Influenza A Seasonality in Wild Pig Populations. Pepin KM, Pedersen K, Wan X-F, Cunningham FL, Webb CT, Wilber MQ. Integrative and Comparative Biology; 59(5):1231-1242.

Date published: November 1, 2019
Featured in this article: XiuFeng “Henry” Wan.

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Protein Ubiquitylation and Sumoylation Site Prediction Based on Ensemble and Transfer Learning. He F, Wang R, Gao Y, Wang D, Yu Y, Xu D, Zhao X. Proceedings - 2019 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2019; 117-123.

Date published: November 1, 2019
Featured in this article: Dong Xu.

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One thousand plant transcriptomes and the phylogenomics of green plants. Leebens-Mack JH, Barker MS, Carpenter EJ, Deyholos MK, Gitzendanner MA, Graham SW, Grosse I, Li Z, Melkonian M, Mirarab S, Porsch M, Quint M, Rensing SA, Soltis DE, Soltis PS, Stevenson DW, Ullrich KK, Wickett NJ, DeGironimo L, Edger PP, Jordon-Thaden IE, Joya S, Liu T, Melkonian B, Miles NW, Pokorny L, Quigley C, Thomas P, Villarreal JC, Augustin MM, Barrett MD, Baucom RS, Beerling DJ, Benstein RM, Biffin E, Brockington SF, Burge DO, Burris JN, Burris KP, Burtet-Sarramegna V, Caicedo AL, Cannon SB, Çebi Z, Chang Y, Chater C, Cheeseman JM, Chen T, Clarke ND, Clayton H, Covshoff S, Crandall-Stotler BJ, Cross H, dePamphilis CW, Der JP, Determann R, Dickson RC, Di Stilio VS, Ellis S, Fast E, Feja N, Field KJ, Filatov DA, Finnegan PM, Floyd SK, Fogliani B, García N, Gâteblé G, Godden GT, Goh FQY, Greiner S, Harkess A, Heaney JM, Helliwell KE, Heyduk K, Hibberd JM, Hodel RGJ, Hollingsworth PM, Johnson MTJ, Jost R, Joyce B, Kapralov MV, Kazamia E, Kellogg EA, Koch MA, Von Konrat M, Könyves K, Kutchan TM, Lam V, Larsson A, Leitch AR, Lentz R, Li F-W, Lowe AJ, Ludwig M, Manos PS, Mavrodiev E, McCormick MK, McKain M, McLellan T, McNeal JR, Miller RE, Nelson MN, Peng Y, Ralph P, Real D, Riggins CW, Ruhsam M, Sage RF, Sakai AK, Scascitella M, Schilling EE, Schlösser E-M, Sederoff H, Servick S, Sessa EB, Shaw AJ, Shaw SW, Sigel EM, Skema C, Smith AG, Smithson A, Stewart CN Jr, Stinchcombe JR, Szövényi P, Tate JA, Tiebel H, Trapnell D, Villegente M, Wang C-N, Weller SG, Wenzel M, Weststrand S, Westwood JH, Whigham DF, Wu S, Wulff AS, Yang Y, Zhu D, Zhuang C, Zuidof J, Chase MW, Pires JC, Rothfels CJ, Yu J, Chen C, Chen L, Cheng S, Li J, Li R, Li X, Lu H, Ou Y, Sun X, Tan X, Tang J, Tian Z, Wang F, Wang J, Wei X, Xu X, Yan Z, Yang F, Zhong X, Zhou F, Zhu Y, Zhang Y, Ayyampalayam S, Barkman TJ, Nguyen N-P, Matasci N, Nelson DR, Sayyari E, Wafula EK, Walls RL, Warnow T, An H, Arrigo N, Baniaga AE, Galuska S, Jorgensen SA, Kidder TI, Kong H, Lu-Irving P, Marx HE, Qi X, Reardon CR, Sutherland BL, Tiley GP, Welles SR, Yu R, Zhan S, Gramzow L, Theißen G, Wong GK-S, One Thousand Plant Transcriptomes Initiative. Nature; 574(7780):679-685.

Date published: October 31, 2019
Featured in this article: J. Chris Pires, Hong An.

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Modeling of contextual information in knowledge graphs of diagnostic reports. Giannaris P, Tang C, Kholod O, Hanson S, Shyu C-R, Hammer R, Xu D, Shin D. CEUR Workshop Proceedings; 2515:20-29.

Date published: October 26, 2019
Featured in this article: Dong Xu.

Jasmonic acid is required for plant acclimation to a combination of high light and heat stress. Balfagón D, Sengupta S, Gómez-Cadenas A, Fritschi FB, Azad RK, Mittler R, Zandalinasc SI. Plant Physiology; 181(4):1668-1682.

Date published: October 8, 2019
Featured in this article: Ron Mittler.

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Multi-cloud performance and security-driven brokering for bioinformatics workflows. Nguyen M, Debroy S, Calyam P, Lyu Z, Joshi T. Proceedings - International Conference on Network Protocols, ICNP; 2019-October:8888071.

Date published: October 7, 2019
Featured in this article: Zhen Lyu, Trupti Joshi.

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AAV9-mediated delivery of miR-23a reduces disease severity in Smn2B/-SMA model mice. Kaifer KA, Villalón E, O'Brien BS, Sison SL, Smith CE, Simon ME, Marquez J, O'Day S, Hopkins AE, Neff R, Rindt H, Ebert AD, Lorson CL. Human Molecular Genetics; 28(19):3199-3210.

Date published: October 1, 2019
Featured in this article: Caley Smith, Christian Lorson.

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Redox-dependent gating of VDAC by mitoNEET. Lipper CH, Stofleth JT, Bai F, Sohn Y-S, Roy S, Mittler R, Nechushtai R, Onuchic JN, Jennings PA. Proceedings of the National Academy of Sciences of the United States of America; 116(40):19924-19929.

Date published: October 1, 2019
Featured in this article: Ron Mittler.

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12-Hydroxy-Jasmonoyl-l-Isoleucine Is an Active Jasmonate That Signals through CORONATINE INSENSITIVE 1 and Contributes to the Wound Response in Arabidopsis. Poudel AN, Holtsclaw RE, Kimberlin A, Sen S, Zeng S, Joshi T, Lei Z, Sumner LW, Singh K, Matsuura H, Koo AJ. Plant and Cell Physiology; 60(10):2152-2166.

Date published: October 1, 2019
Featured in this article: Sidharth Sen, Shuai Zeng, Trupti Joshi, Zhentian Lei, Lloyd Sumner, Kamlendra Singh.

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Correction: Evidence for plant-derived xenomiRs based on a large-scale analysis of public small RNA sequencing data from human samples (PLoS ONE (2019) 13:6 (e0187519) DOI: 10.1371/journal.pone.0187519). Zhao Q, Liu Y, Zhang N, Hu M, Zhang H, Joshi T, Xu D. PLoS ONE; 14(10):e0224537.

Date published: October 1, 2019
Featured in this article: Trupti Joshi, Dong Xu.

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Serologic evidence for influenza a virus exposure in three loon species breeding in Alaska, USA. Uher-Koch BD, Spivey TJ, Van Hemert CR, Schmutz JA, Jiang K, Wan X-F, Ramey AM. Journal of Wildlife Diseases; 55(4):862-867.

Date published: October 1, 2019
Featured in this article: XiuFeng “Henry” Wan.

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A missense mutation in SLC6A1 associated with Lennox-Gastaut syndrome impairs GABA transporter 1 protein trafficking and function. Cai K, Wang J, Eissman J, Wang J, Nwosu G, Shen W, Liang H-C, Li X-J, Zhu H-X, Yi Y-H, Song J, Xu D, Delpire E, Liao W-P, Shi Y-W, Kang J-Q. Experimental Neurology; 320:112973.

Date published: October 1, 2019
Featured in this article: Dong Xu.

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Extracting molecular entities and their interactions from pathway figures based on deep learning. He F, Wang D, Innokenteva Y, Kholod O, Shin D, Xu D. ACM-BCB 2019 - Proceedings of the 10th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics; 397-404.

Date published: September 7, 2019
Featured in this article: Dong Xu.

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Machine Learning Classifiers for Endometriosis Using Transcriptomics and Methylomics Data. Akter S, Xu D, Nagel SC, Bromfield JJ, Pelch K, Wilshire GB, Joshi T. Frontiers in Genetics; 10:766.

Date published: September 4, 2019
Featured in this article: Dong Xu, Trupti Joshi.

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Early Extracellular ATP Signaling in Arabidopsis Root Epidermis: A Multi-Conductance Process. Wang L, Stacey G, Leblanc-Fournier N, Legué V, Moulia B, Davies JM. Frontiers in Plant Science; 10:1064.

Date published: September 4, 2019
Featured in this article: Gary Stacey.

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Whole-Plant Live Imaging of Reactive Oxygen Species. Fichman Y, Miller G, Mittler R. Molecular Plant; 12(9):1203-1210.

Date published: September 2, 2019
Featured in this article: Yosef Fichman, Ron Mittler.

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Comparative genomic analysis of six Glossina genomes, vectors of African trypanosomes. Attardo GM, Abd-Alla AMM, Acosta-Serrano A, Allen JE, Bateta R, Benoit JB, Bourtzis K, Caers J, Caljon G, Christensen MB, Farrow DW, Friedrich M, Hua-Van A, Jennings EC, Larkin DM, Lawson D, Lehane MJ, Lenis VP, Lowy-Gallego E, Macharia RW, Malacrida AR, Marco HG, Masiga D, Maslen GL, Matetovici I, Meisel RP, Meki I, Michalkova V, Miller WJ, Minx P, Mireji PO, Ometto L, Parker AG, Rio R, Rose C, Rosendale AJ, Rota-Stabelli O, Savini G, Schoofs L, Scolari F, Schoofs L, Scolari F, Swain MT, Takáč P, Tomlinson C, Tsiamis G, Van Den Abbeele J, Vigneron A, Wang J, Warren WC, Waterhouse RM, Weirauch MT, Weiss BL, Wilson RK, Zhao X, Aksoy S. Genome Biology; 20(1):187.

Date published: September 2, 2019
Featured in this article: Wes Warren.

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Nrf2-inducing and HMG-CoA reductase inhibitory activities of a polyphenol-rich fraction of Guazuma ulmifolia leaves. Sulistiyani S, Falah S, Wahyuni W, Andrianto D, Lelono A, Nurcholis W, Mossine V, Hannink M. Asian Pacific Journal of Tropical Biomedicine; 9(9):389-396.

Date published: September 1, 2019
Featured in this article: Mark Hannink.

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SoyCSN: Soybean context-specific network analysis and prediction based on tissue-specific transcriptome data. Wang J, Hossain MS, Lyu Z, Schmutz J, Stacey G, Xu D, Joshi T. Plant Direct; 3(9):e00167.

Date published: September 1, 2019
Featured in this article: Juexin Wang, Zhen Lyu, Gary Stacey, Dong Xu, Trupti Joshi.

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Ectopic defense gene expression is associated with growth defects in medicago truncatula lignin pathway mutants. Ha CM, Fine D, Bhatia A, Rao X, Martin MZ, Engle NL, Wherritt DJ, Tschaplinski TJ, Sumner LW, Dixon RA. Plant Physiology; 181(1):63-84.

Date published: September 1, 2019
Featured in this article: Lloyd Sumner.

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Purinergic signaling in Alzheimer’s disease. Erb L, Woods LT, Khalafalla MG, Weisman GA. Brain Research Bulletin; 151:25-37.

Date published: September 1, 2019
Featured in this article: Lucas Woods, Gary Weisman.

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A Fast Projection-Based Algorithm for Clustering Big Data. Wu Y, He Z, Lin H, Zheng Y, Zhang J, Xu D. Interdisciplinary Sciences: Computational Life Sciences; 11(3):360-366.

Date published: September 1, 2019
Featured in this article: Dong Xu.

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Keep talking: Crosstalk between iron and sulfur networks fine-tunes growth and development to promote survival under iron limitation. Mendoza-Cózatl DG, Gokul A, Carelse MF, Jobe TO, Long TA, Keyster M. Journal of Experimental Botany; 70(16):4197-4210.

Date published: August 19, 2019
Featured in this article: David Mendoza-Cózatl.

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A seed germination transcriptomic study contrasting two soybean genotypes that differ in terms of their tolerance to the deleterious impacts of elevated temperatures during seed fill. Gillman JD, Biever JJ, Ye S, Spollen WG, Givan SA, Lyu Z, Joshi T, Smith JR, Fritschi FB. BMC Research Notes; 12(1):522.

Date published: August 19, 2019
Featured in this article: Bill Spollen, Scott Givan, Zhen Lyu, Trupti Joshi.

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A rectified factor network based biclustering method for detecting cancer-related coding genes and miRNAs, and their interactions. Su L, Liu G, Wang J, Xu D. Methods; 166:22-30.

Date published: August 15, 2019
Featured in this article: Dong Xu.

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Muscle fiber-type selective propensity to pathology in the nmd mouse model of SMARD1. Villalón E, Lee NN, Marquez J, Lorson CL. Biochemical and Biophysical Research Communications; 516(1):313-319.

Date published: August 13, 2019
Featured in this article: Christian Lorson.

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Affordable remote monitoring of plant growth in facilities using Raspberry Pi computers. Grindstaff B, Mabry ME, Blischak PD, Quinn M, Chris Pires J. Applications in Plant Sciences; 7(8):e11280.

Date published: August 12, 2019
Featured in this article: J. Chris Pires.

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Biotechnological potential of LSD1, EDS1, and PAD4 in the improvement of crops and industrial plants. Bernacki MJ, Czarnocka W, Szechyńska-Hebda M, Mittler R, Karpiński S. Plants; 8(8):290.

Date published: August 1, 2019
Featured in this article: Ron Mittler.

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Silencing AXL by covalent siRNA-gelatin-antibody nanoconjugate inactivates mTOR/EMT pathway and stimulates p53 for TKI sensitization in NSCLC. Suresh D, Zambre A, Mukherjee S, Ghoshdastidar S, Jiang Y, Joshi T, Upendran A, Kannan R. Nanomedicine: Nanotechnology, Biology, and Medicine; 20:102007.

Date published: August 1, 2019
Featured in this article: Yuexu Jiang, Trupti Joshi.

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Early genistein exposure of California mice and effects on the gut microbiota-brain axis. Marshall BL, Liu Y, Farrington MJ, Mao J, Helferich WG, Schenk AK, Bivens NJ, Sarma SJ, Lei Z, Sumner LW, Joshi T, Rosenfeld CS. Journal of Endocrinology; 242(2):139-157.

Date published: August 1, 2019
Featured in this article: Jiude Mao, Nathan Bivens, Saurav Sarma, Zhentian Lei, Lloyd Sumner, Trupti Joshi.

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Virion-associated, host-derived DHX9/RNA helicase A enhances the processivity of HIV-1 reverse transcriptase on genomic RNA. Brady S, Singh G, Bolinger C, Song Z, Boeras I, Weng K, Trent B, Brown WC, Singh K, Boris-Lawrie K, Heng X. Journal of Biological Chemistry; 294(30):11473-11485.

Date published: July 26, 2019
Featured in this article: Kamlendra Singh.

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Increasing protected data accessibility for age-related cataract research using a semi-automated honest broker. Valluripally S, Raju M, Calyam P, Lemus M, Purohit S, Mosa A, Joshi T. Modeling and Artificial Intelligence in Ophthalmology; 2(3):115-132.

Date published: July 25, 2019
Featured in this article: Murugesan Raju, Trupti Joshi.

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Demonstration of highly efficient dual gRNA CRISPR/Cas9 editing of the homeologous GmFAD2-1A and GmFAD2-1B genes to yield a high oleic, low linoleic and α-linolenic acid phenotype in soybean. Do PT, Nguyen CX, Bui HT, Tran LTN, Stacey G, Gillman JD, Zhang ZJ, Stacey MG. BMC Plant Biology; 19(1):311.

Date published: July 15, 2019
Featured in this article: Gary Stacey, Minviluz (Bing) Stacey.

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Capsule network for protein post-translational modification site prediction. Wang D, Liang Y, Xu D. Bioinformatics; 35(14):2386-2394.

Date published: July 15, 2019
Featured in this article: Dong Xu.

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The Piranha Genome Provides Molecular Insight Associated to Its Unique Feeding Behavior. Schartl M, Kneitz S, Volkoff H, Adolfi M, Schmidt C, Fischer P, Minx P, Tomlinson C, Meyer A, Warren WC. Genome Biology and Evolution; 11(8):2099-2106.

Date published: July 8, 2019
Featured in this article: Wes Warren.

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Aspirin Triggered Resolvin D1 reduces inflammation and restores saliva secretion in a Sjögren’s syndrome mouse model. Dean S, Wang C-S, Nam K, Maruyama CL, Trump BG, Baker OJ. Rheumatology (United Kingdom); 58(7):1285-1292.

Date published: July 1, 2019
Featured in this article: Kihoon Nam, Olga Baker.

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Effects of moloney leukemia virus 10 protein on hepatitis B virus infection and viral replication. Puray-Chavez MN, Farghali MH, Yapo V, Huber AD, Liu D, Ndongwe TP, Casey MC, Laughlin T, Hannink M, Tedbury PR, Sarafianos SG. Viruses; 11(7):651.

Date published: July 1, 2019
Featured in this article: Mark Hannink.

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Exploring the molecular genetic foundations of cancer biology and how biomedical advances are made in an advanced undergraduate course. Alexander S, Hannink M. Biochemistry and Molecular Biology Education; 47(4):408-416.

Date published: July 1, 2019
Featured in this article: Mark Hannink.

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A guinea fowl genome assembly provides new evidence on evolution following domestication and selection in galliformes. Vignal A, Boitard S, Thébault N, Dayo G-K, Yapi-Gnaore V, Youssao Abdou Karim I, Berthouly-Salazar C, Pálinkás-Bodzsár N, Guémené D, Thibaud-Nissen F, Warren WC, Tixier-Boichard M, Rognon X. Molecular Ecology Resources; 19(4):997-1014.

Date published: July 1, 2019
Featured in this article: Wes Warren.

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Expression signatures of cisplatin- And trametinib-treated early-stage medaka melanomas. Klotz B, Kneitz S, Lu Y, Boswell W, Postlethwait J, Warren W, Walter RB, Schartl M. G3: Genes, Genomes, Genetics; 9(7):2267-2276.

Date published: July 1, 2019
Featured in this article: Wes Warren.

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Dramatic changes in gene expression in different forms of Crithidia fasciculata reveal potential mechanisms for insect-specific adhesion in kinetoplastid parasites. Filosa JN, Berry CT, Ruthel G, Beverley SM, Warren WC, Tomlinson C, Myler PJ, Dudkin EA, Povelones ML, Povelones M. PLoS Neglected Tropical Diseases; 13(7):e0007570.

Date published: July 1, 2019
Featured in this article: Wes Warren.

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Transcriptome sequencing of active buds from Populus deltoides CL. and Populus × zhaiguanheibaiyang reveals phytohormones involved in branching. Wang J, Tian Y, Li J, Yang K, Xing S, Han X, Xu D, Wang Y. Genomics; 111(4):700-709.

Date published: July 1, 2019
Featured in this article: Dong Xu.

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PSICA: a fast and accurate web service for protein model quality analysis. Wang W, Li Z, Wang J, Xu D, Shang Y. Nucleic Acids Research; 47(W1):W443-W450.

Date published: July 1, 2019
Featured in this article: Dong Xu.

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GS-CA compounds: First-in-class HIV-1 capsid inhibitors covering multiple grounds. Singh K, Gallazzi F, Hill KJ, Burke DH, Lange MJ, Quinn TP, Neogi U, Sönnerborg A. Frontiers in Microbiology; 10(JUN):1227.

Date published: June 20, 2019
Featured in this article: Kamlendra Singh, Fabio Gallazzi, Donald Burke-Agüero, Margaret Lange, Thomas Quinn.

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Synergistic effects of laminin-1 peptides, VEGF and FGF9 on salivary gland regeneration. Nam K, Dean SM, Brown CT, Smith RJ Jr, Lei P, Andreadis ST, Baker OJ. Acta Biomaterialia; 91:186-194.

Date published: June 1, 2019
Featured in this article: Kihoon Nam, Olga Baker.

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Long-acting Anti-HIV drugs targeting HIV-1 reverse transcriptase and integrase. Singh K, Sarafianos SG, Sönnerborg A. Pharmaceuticals; 12(2):62.

Date published: June 1, 2019
Featured in this article: Kamlendra Singh.

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Integrated metabolomics identifies CYP72A67 and CYP72A68 oxidases in the biosynthesis of Medicago truncatula oleanate sapogenins. Tzin V, Snyder JH, Yang DS, Huhman DV, Watson BS, Allen SN, Tang Y, Miettinen K, Arendt P, Pollier J, Goossens A, Sumner LW. Metabolomics; 15(6):85.

Date published: June 1, 2019
Featured in this article: Lloyd Sumner.

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Influenza Neuraminidase: Underrated Role in Receptor Binding. Wen F, Wan X-F. Trends in Microbiology; 27(6):447-479.

Date published: June 1, 2019
Featured in this article: XiuFeng “Henry” Wan.

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Large-scale profiling of saponins in different ecotypes of Medicago truncatula. Lei Z, Watson BS, Huhman D, Yang DS, Sumner LW. Frontiers in Plant Science; 10:850.

Date published: May 31, 2019
Featured in this article: Zhentian Lei, Lloyd Sumner.

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HDAC5 catalytic activity suppresses cardiomyocyte oxidative stress and NRF2 target gene expression. Hu T, Schreiter FC, Bagchi RA, Tatman PD, Hannink M, McKinsey TA. Journal of Biological Chemistry; 294(21):8640-8652.

Date published: May 24, 2019
Featured in this article: Mark Hannink.

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Sequence determinants in gammaretroviral Env cytoplasmic tails dictate virus-specific pseudotyping compatibility. Song YE, Olinger GY, Janaka SK, Johnson MC. Journal of Virology; 93(11):e0217218.

Date published: May 15, 2019
Featured in this article: Marc Johnson.

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Novel Hepatitis B Virus Capsid-Targeting Antiviral That Aggregates Core Particles and Inhibits Nuclear Entry of Viral Cores. Huber AD, Pineda DL, Liu D, Boschert KN, Gres AT, Wolf JJ, Coonrod MN, Tang J, Laughlin TG, Yang Q, Puray-Chavez MN, Ji J, Singh K, Kirby KA, Wang Z, Sarafianos SG. ACS Infectious Diseases; 5(5):750-758.

Date published: May 10, 2019
Featured in this article: Kamlendra Singh.

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A method for investigating the pseudomonas syringae-arabidopsis thaliana pathosystem under various light environments. Leuchtman DL, Shumate AD, Gassmann W, Liscum E. Methods in Molecular Biology; 1991:107-113.

Date published: May 1, 2019
Featured in this article: Walter Gassmann.

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Generating transgenic arabidopsis plants for functional analysis of pathogen effectors and corresponding R proteins. Pike S, Gassmann W, Su J. Methods in Molecular Biology; 1991:199-206.

Date published: May 1, 2019
Featured in this article: Sharon Pike, Walter Gassmann, Jianbin Su.

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Preface. Gassmann W. Methods in Molecular Biology; 1991:v-vi.

Date published: May 1, 2019
Featured in this article: Walter Gassmann.

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Direct regulation of the EFR-dependent immune response by arabidopsis TCP transcription factors. Spears BJ, Howton TC, Gao F, Garner CM, Shahid Mukhtar M, Gassmann W. Molecular Plant-Microbe Interactions; 32(5):540-549.

Date published: May 1, 2019
Featured in this article: Walter Gassmann.

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Author Correction: A lipid-based partitioning mechanism for selective incorporation of proteins into membranes of HIV particles (Nature Cell Biology, (2019), 21, 4, (452-461), 10.1038/s41556-019-0300-Y). Sengupta P, Seo AY, Pasolli HA, Song YE, Johnson MC, Lippincott-Schwartz J. Nature Cell Biology; 21(5):662.

Date published: May 1, 2019
Featured in this article: Marc Johnson.

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HIV-1 subtype C with PYxE insertion has enhanced binding of Gag-p6 to host cell protein ALIX and increased replication fitness. van Domselaar R, Njenda DT, Rao R, Sönnerborg A, Singh K, Neogi U. Journal of Virology; 93(9):e00077-19.

Date published: May 1, 2019
Featured in this article: Kamlendra Singh.

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P2X7 receptor deletion suppresses γ-radiation-induced hyposalivation. Gilman KE, Camden JM, Klein RR, Zhang Q, Weisman GA, Limesand KH. American Journal of Physiology - Regulatory Integrative and Comparative Physiology; 316(5):R687-R696.

Date published: May 1, 2019
Featured in this article: Jean Camden, Gary Weisman.

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Prediction of Protein Backbone Torsion Angles Using Deep Residual Inception Neural Networks. Fang C, Shang Y, Xu D. IEEE/ACM Transactions on Computational Biology and Bioinformatics; 16(3):1020-1028.

Date published: May 1, 2019
Featured in this article: Dong Xu.

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The deep learning-based recommender system “pubmender” for choosing a biomedical publication venue: Development and validation study. Feng X, Zhang H, Ren Y, Shang P, Zhu Y, Liang Y, Guan R, Xu D. Journal of Medical Internet Research; 21(5):e12957.

Date published: May 1, 2019
Featured in this article: Dong Xu.

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Identification of new loci for salt tolerance in soybean by high-resolution genome-wide association mapping. Do TD, Vuong TD, Dunn D, Clubb M, Valliyodan B, Patil G, Chen P, Xu D, Nguyen HT, Shannon JG. BMC Genomics; 20(1):318.

Date published: April 25, 2019
Featured in this article: Dong Xu.

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Ambient Metabolic Profiling and Imaging of Biological Samples with Ultrahigh Molecular Resolution Using Laser Ablation Electrospray Ionization 21 Tesla FTICR Mass Spectrometry. Stopka SA, Samarah LZ, Shaw JB, Liyu AV, Veličković D, Agtuca BJ, Kukolj C, Koppenaal DW, Stacey G, Paša-Tolić L, Anderton CR, Vertes A. Analytical Chemistry; 91(8):5028-5035.

Date published: April 16, 2019
Featured in this article: Gary Stacey.

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Characterization of the spatial and temporal expression of two soybean mirnas identifies SCL6 as a novel regulator of soybean nodulation. Hossain MS, Hoang NT, Yan Z, Tóth K, Meyers BC, Stacey G. Frontiers in Plant Science; 10:475.

Date published: April 16, 2019
Featured in this article: Gary Stacey.

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ATP7A delivers copper to the lysyl oxidase family of enzymes and promotes tumorigenesis and metastasis. Shanbhag V, Jasmer-McDonald K, Zhu S, Martin AL, Gudekar N, Khan A, Ladomersky E, Singh K, Weisman GA, Petris MJ. Proceedings of the National Academy of Sciences of the United States of America; 116(14):6836-6841.

Date published: April 2, 2019
Featured in this article: Vinit Shanbhag, Kimberly Jasmer, Nikita Gudekar, Aslam Khan, Kamlendra Singh, Gary Weisman, Michael Petris.

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A lipid-based partitioning mechanism for selective incorporation of proteins into membranes of HIV particles. Sengupta P, Seo AY, Pasolli HA, Song YE, Johnson MC, Lippincott-Schwartz J. Nature Cell Biology; 21(4):452-461.

Date published: April 1, 2019
Featured in this article: Marc Johnson.

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Identification and characterization of a core set of ROS wave-associated transcripts involved in the systemic acquired acclimation response of Arabidopsis to excess light. Zandalinas SI, Sengupta S, Burks D, Azad RK, Mittler R. Plant Journal; 98(1):126-141.

Date published: April 1, 2019
Featured in this article: Ron Mittler.

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Directions for research and training in plant omics: Big Questions and Big Data. Argueso CT, Assmann SM, Birnbaum KD, Chen S, Dinneny JR, Doherty CJ, Eveland AL, Friesner J, Greenlee VR, Law JA, Marshall-Colón A, Mason GA, O'Lexy R, Peck SC, Schmitz RJ, Song L, Stern D, Varagona MJ, Walley JW, Williams CM. Plant Direct; 3(4):e00133.

Date published: April 1, 2019
Featured in this article: Scott Peck.

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CMCDG, a novel nucleoside analog with favorable safety features, exerts potent activity against wild-type and entecavir-resistant hepatitis B virus. Higashi-Kuwata N, Hayashi S, Das D, Kohgo S, Murakami S, Hattori S-I, Imoto S, Venzon DJ, Singh K, Sarafianos SG, Tanaka Y, Mitsuya H. Antimicrobial Agents and Chemotherapy; 63(4):e02143-18.

Date published: April 1, 2019
Featured in this article: Kamlendra Singh.

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The lipid biochemistry of eukaryotic algae. Li-Beisson Y, Thelen JJ, Fedosejevs E, Harwood JL. Progress in Lipid Research; 74:31-68.

Date published: April 1, 2019
Featured in this article: Jay Thelen.

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Pathogenesis of co-infections of influenza D virus and Mannheimia haemolytica in cattle. Zhang X, Outlaw C, Olivier A, Woolums A, Epperson W, Wan X-F. Veterinary Microbiology; 231:246-253.

Date published: April 1, 2019
Featured in this article: XiuFeng “Henry” Wan.

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Survey of arctic alaskan wildlife for influenza a antibodies: Limited evidence for exposure of mammals. Van Hemert C, Spivey TJ, Uher-Koch BD, Atwood TC, Sinnett DR, Meixell BW, Hupp JW, Jiang K, Adams LG, Gustine DD, Ramey AM, Wan X-F. Journal of Wildlife Diseases; 55(2):387-398.

Date published: April 1, 2019
Featured in this article: XiuFeng “Henry” Wan.

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Evolution of gene regulation in ruminants differs between evolutionary breakpoint regions and homologous synteny blocks. Farré M, Kim J, Proskuryakova AA, Zhang Y, Kulemzina AI, Li Q, Zhou Y, Xiong Y, Johnson JL, Perelman PL, Johnson WE, Warren WC, Kukekova AV, Zhang G, O'Brien SJ, Ryder OA, Graphodatsky AS, Ma J, Lewin HA, Larkin DM. Genome Research; 29(4):576-589.

Date published: April 1, 2019
Featured in this article: Wes Warren.

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Science at Sundance. Krauss RS, Shapiro MD, Koch PL, Kardon G, Cornelison DDW. Science; 363(6433):1270.

Date published: March 22, 2019
Featured in this article: D Cornelison.

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Relationship Between Carbon Mobilization and Root Growth Measured by Carbon-11 Tracer in Arabidopsis Starch Mutants. Song L, Agtuca B, Schueller MJ, Jurisson SS, Stacey G, Ferrieri RA. Journal of Plant Growth Regulation; 38(1):164-179.

Date published: March 15, 2019
Featured in this article: Gary Stacey.

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Terpenoid esters are the major constituents from leaf lipid droplets of Camellia sinensis. Zhou X, Chen X, Du Z, Zhang Y, Zhang W, Kong X, Thelen JJ, Chen C, Chen M. Frontiers in Plant Science; 10:179.

Date published: March 7, 2019
Featured in this article: Jay Thelen.

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The barren stalk2 Gene Is Required for Axillary Meristem Development in Maize. Yao H, Skirpan A, Wardell B, Matthes MS, Best NB, McCubbin T, Durbak A, Smith T, Malcomber S, McSteen P. Molecular Plant; 12(3):374-389.

Date published: March 4, 2019
Featured in this article: Paula McSteen.

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Auxin EvoDevo: Conservation and Diversification of Genes Regulating Auxin Biosynthesis, Transport, and Signaling. Matthes MS, Best NB, Robil JM, Malcomber S, Gallavotti A, McSteen P. Molecular Plant; 12(3):298-320.

Date published: March 4, 2019
Featured in this article: Jan Lorie Robil, Paula McSteen.

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Comparing human and mouse salivary glands: A practice guide for salivary researchers. Maruyama CL, Monroe MM, Hunt JP, Buchmann L, Baker OJ. Oral Diseases; 25(2):403-415.

Date published: March 1, 2019
Featured in this article: Olga Baker.

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Strain-specific effect on biphasic DNA binding by HIV-1 integrase. Hill KJ, Rogers LC, Njenda DT, Burke DH, Sarafianos SG, Sonnerborg A, Neogi U, Singh K. AIDS; 33(3):588-592.

Date published: March 1, 2019
Featured in this article: Donald Burke-Agüero, Kamlendra Singh.

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Recovery of blood flow regulation in microvascular resistance networks during regeneration of mouse gluteus maximus muscle. Fernando CA, Pangan AM, Cornelison DDW, Segal SS. Journal of Physiology; 597(5):1401-1417.

Date published: March 1, 2019
Featured in this article: D Cornelison.

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Using Xenopus laevis Oocytes to Functionally Characterize Plant Transporters. Pike S, Matthes MS, McSteen P, Gassmann W. Current protocols in plant biology; 4(1):e20087.

Date published: March 1, 2019
Featured in this article: Sharon Pike, Paula McSteen, Walter Gassmann.

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Plant-derived phosphocholine facilitates cellular uptake of anti-pulmonary fibrotic HJT-sRNA-m7. Du J, Liang Z, Xu J, Zhao Y, Li X, Zhang Y, Zhao D, Chen R, Liu Y, Joshi T, Chang J, Wang Z, Zhang Y, Zhu J, Liu Q, Xu D, Jiang C. Science China Life Sciences; 62(3):309-320.

Date published: March 1, 2019
Featured in this article: Trupti Joshi, Dong Xu.

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Importance of poly- 3-hydroxybutyrate metabolism to the ability of Herbaspirillum seropedicae to promote plant growth. Alves LPS, do Amaral FP, Kim D, Bom MT, Gavídia MP, Teixeira CS, Holthman F, Pedrosa FO, de Souza EM, Chubatsu LS, Müller-Santos M, Stacey G. Applied and Environmental Microbiology; 85(6):e02586-18.

Date published: March 1, 2019
Featured in this article: Gary Stacey.

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UHPLC-MS Analyses of Plant Flavonoids. Lei Z, Sumner BW, Bhatia A, Sarma SJ, Sumner LW. Current protocols in plant biology; 4(1):e20085.

Date published: March 1, 2019
Featured in this article: Zhentian Lei, Barbara Sumner, Saurav Sarma, Lloyd Sumner.

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Antarctic blackfin icefish genome reveals adaptations to extreme environments. Kim B-M, Amores A, Kang S, Ahn D-H, Kim J-H, Kim I-C, Lee JH, Lee SG, Lee H, Lee J, Kim H-W, Desvignes T, Batzel P, Sydes J, Titus T, Wilson CA, Catchen JM, Warren WC, Schartl M, Detrich HW III, Postlethwait JH, Park H. Nature Ecology and Evolution; 3(3):469-478.

Date published: March 1, 2019
Featured in this article: Wes Warren.

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New deep learning methods for protein loop modeling. Nguyen SP, Li Z, Xu D, Shang Y. IEEE/ACM Transactions on Computational Biology and Bioinformatics; 16(2):596-606.

Date published: March 1, 2019
Featured in this article: Dong Xu.

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An extracellular histidine-containing motif in the zinc transporter ZIP4 plays a role in zinc sensing and zinc-induced endocytosis in mammalian cells. Chun H, Korolnek T, Lee C-J, Coyne HJ III, Winge DR, Kim B-E, Petris MJ. Journal of Biological Chemistry; 294(8):2815-2826.

Date published: February 22, 2019
Featured in this article: Michael Petris.

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Activation of Innate Immune Responses by a CpG Oligonucleotide Sequence Composed Entirely of Threose Nucleic Acid. Lange MJ, Burke DH, Chaput JC. Nucleic Acid Therapeutics; 29(1):51-59.

Date published: February 1, 2019
Featured in this article: Margaret Lange, Donald Burke-Agüero.

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NEET Proteins: A new link between iron metabolism, reactive oxygen species, and cancer. Mittler R, Darash-Yahana M, Sohn YS, Bai F, Song L, Cabantchik IZ, Jennings PA, Onuchic JN, Nechushtai R. Antioxidants and Redox Signaling; 30(8):1083-1095.

Date published: February 1, 2019
Featured in this article: Ron Mittler.

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Editorial. Rivero RM, Oliver MJ, Mittler R. Physiologia Plantarum; 165(2):125-127.

Date published: February 1, 2019
Featured in this article: Ron Mittler.

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Molecular tools for detecting Pdh1 can improve soybean breeding efficiency by reducing yield losses due to pod shatter. Miranda C, Culp C, Škrabišová M, Joshi T, Belzile F, Grant DM, Bilyeu K. Molecular Breeding; 39(2):27.

Date published: February 1, 2019
Featured in this article: Trupti Joshi.

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Usability of reference-free transcriptome assemblies for detection of differential expression: A case study on Aethionema arabicum dimorphic seeds. Wilhelmsson PKI, Chandler JO, Fernandez-Pozo N, Graeber K, Ullrich KK, Arshad W, Khan S, Hofberger JA, Buchta K, Edger PP, Pires JC, Schranz ME, Leubner-Metzger G, Rensing SA. BMC Genomics; 20(1):95.

Date published: January 30, 2019
Featured in this article: J. Chris Pires.

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Characterizing the Major Structural Variant Alleles of the Human Genome. Audano PA, Sulovari A, Graves-Lindsay TA, Cansilieris S, Sorensen M, Welch AE, Dougherty ML, Nelson BJ, Shah A, Dutcher SK, Warren WC, Magrini V, McGrath SD, Li YI, Wilson RK, Eichler EE. Cell; 176(3):663-675.e19.

Date published: January 24, 2019
Featured in this article: Wes Warren.

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Domain-specific Topic Model for Knowledge Discovery through Conversational Agents in Data Intensive Scientific Communities. Zhang Y, Calyam P, Joshi T, Nair S, Xu D. Proceedings - 2018 IEEE International Conference on Big Data, Big Data 2018; 4886-4895.

Date published: January 22, 2019
Featured in this article: Trupti Joshi, Dong Xu.

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Knowledge Base Commons (KBCommons) v1.0: A multi OMICS’ web-based data integration framework for biological discoveries. Zeng S, Lyu Z, Narisetti SRK, Xu D, Joshi T. Proceedings - 2018 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018; 589-594.

Date published: January 21, 2019
Featured in this article: Shuai Zeng, Zhen Lyu, Dong Xu, Trupti Joshi.

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Integrating Gene Expression Data and Pathway Knowledge for in Silico Hypothesis Generation with IMPRes. Jiang Y, Wang D, Xu D, Joshi T. Proceedings - 2018 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018; 102-107.

Date published: January 21, 2019
Featured in this article: Yuexu Jiang, Duolin Wang, Dong Xu, Trupti Joshi.

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A Data Mining Approach for Biomarker Discovery Using Transcriptomics in Endometriosis. Akter S, Xu D, Nagel SC, Joshi T. Proceedings - 2018 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018; 969-972.

Date published: January 21, 2019
Featured in this article: Dong Xu, Trupti Joshi.

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Bi-Allelic mutations of LONP1 encoding the mitochondrial LonP1 protease cause pyruvate dehydrogenase deficiency and profound neurodegeneration with progressive cerebellar atrophy. Nimmo GAM, Venkatesh S, Pandey AK, Marshall CR, Hazrati L-N, Blaser S, Ahmed S, Cameron J, Singh K, Ray PN, Suzuki CK, Yoon G. Human Molecular Genetics; 28(2):290-306.

Date published: January 15, 2019
Featured in this article: Kamlendra Singh.

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Community cloud architecture to improve use accessibility with security compliance in health big data applications. Valluripally S, Raju M, Calyam P, Chrisholm M, Sivarathri SS, Mosa A, Joshi T. ACM International Conference Proceeding Series; 377-380.

Date published: January 4, 2019
Featured in this article: Murugesan Raju, Trupti Joshi.

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Copper uptake mechanism of Arabidopsis thaliana high-affinity COPT transporters. Sanz A, Pike S, Khan MA, Carrió-Seguí À, Mendoza-Cózatl DG, Peñarrubia L, Gassmann W. Protoplasma; 256(1):161-170.

Date published: January 3, 2019
Featured in this article: Sharon Pike, David Mendoza-Cózatl, Walter Gassmann.

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DeepDom: Predicting protein domain boundary from sequence alone using stacked bidirectional LSTM. Jiang Y, Wang D, Xu D. Pacific Symposium on Biocomputing; 24(2019):66-75.

Date published: January 3, 2019
Featured in this article: Dong Xu.

Comparative phosphoproteomic analysis of Barley Embryos with different dormancy during imbibition. Ishikawa S, Barrero J, Takahashi F, Peck S, Gubler F, Shinozaki K, Umezawa T. International Journal of Molecular Sciences; 20(2):451.

Date published: January 2, 2019
Featured in this article: Scott Peck.

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The renaissance of comparative biochemistry. Smith SD, Angelovici R, Heyduk K, Maeda HA, Moghe GD, Pires JC, Widhalm JR, Wisecaver JH. American Journal of Botany; 106(1):3-13.

Date published: January 1, 2019
Featured in this article: Ruthie Angelovici, J. Chris Pires.

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Zinc uptake in the Basidiomycota: Characterization of zinc transporters in Ustilago maydis. Martha-Paz AM, Eide D, Mendoza-Cózatl D, Castro-Guerrero NA, Aréchiga-Carvajal ET. Molecular Membrane Biology; 35(1):39-50.

Date published: January 1, 2019
Featured in this article: David Mendoza-Cózatl, Norma Castro-Guerrero.

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The cisd gene family regulates physiological germline apoptosis through ced-13 and the canonical cell death pathway in Caenorhabditis elegans. King SD, Gray CF, Song L, Nechushtai R, Gumienny TL, Mittler R, Padilla PA. Cell Death and Differentiation; 26(1):162-178.

Date published: January 1, 2019
Featured in this article: Ron Mittler.

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Rapid Responses to Abiotic Stress: Priming the Landscape for the Signal Transduction Network. Kollist H, Zandalinas SI, Sengupta S, Nuhkat M, Kangasjärvi J, Mittler R. Trends in Plant Science; 24(1):25-37.

Date published: January 1, 2019
Featured in this article: Ron Mittler.

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Understanding genetic control of root system architecture in soybean: Insights into the genetic basis of lateral root number. Prince SJ, Valliyodan B, Ye H, Yang M, Tai S, Hu W, Murphy M, Durnell LA, Song L, Joshi T, Liu Y, Van de Velde J, Vandepoele K, Grover Shannon J, Nguyen HT. Plant Cell and Environment; 42(1):212-229.

Date published: January 1, 2019
Featured in this article: Trupti Joshi.

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Identification and quantification of phytosterols in black walnut kernels. Vu DC, Lei Z, Sumner LW, Coggeshall MV, Lin C-H. Journal of Food Composition and Analysis; 75:61-69.

Date published: January 1, 2019
Featured in this article: Zhentian Lei, Lloyd Sumner.

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UHPLC-QTOF-MS/MS-SPE-NMR: A Solution to the Metabolomics Grand Challenge of Higher-Throughput, Confident Metabolite Identifications. Bhatia A, Sarma SJ, Lei Z, Sumner LW. Methods in Molecular Biology; 2037:113-133.

Date published: January 1, 2019
Featured in this article: Saurav Sarma, Zhentian Lei, Lloyd Sumner.

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Black Walnut (Juglans nigra) Extracts Inhibit Proinflammatory Cytokine Production from Lipopolysaccharide-Stimulated Human Promonocytic Cell Line U-937. Ho K-V, Schreiber KL, Vu DC, Rottinghaus SM, Jackson DE, Brown CR, Lei Z, Sumner LW, Coggeshall MV, Lin C-H. Frontiers in Pharmacology; 10(SEP):1059.

Date published: January 1, 2019
Featured in this article: Zhentian Lei, Lloyd Sumner.

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Prediction of DNA-binding proteins by interaction fusion feature representation and selective ensemble. You W, Yang Z, Guo G, Wan X-F, Ji G. Knowledge-Based Systems; 163:598-610.

Date published: January 1, 2019
Featured in this article: XiuFeng “Henry” Wan.

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Graph-guided multi-task sparse learning model: A method for identifying antigenic variants of influenza A(H3N2) virus. Han L, Li L, Wen F, Zhong L, Zhang T, Wan X-F. Bioinformatics; 35(1):77-87.

Date published: January 1, 2019
Featured in this article: XiuFeng “Henry” Wan.

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Aerosol transmission of gull-origin Iceland subtype H10N7 influenza A virus in ferrets. Guan M, Hall JS, Zhang X, Dusek RJ, Olivier AK, Liu L, Li L, Krauss S, Danner A, Li T, Rutvisuttinunt W, Lin X, Hallgrimsson GT, Ragnarsdottir SB, Vignisson SR, TeSlaa J, Nashold SW, Jarman R, Wan X-F. Journal of Virology; 93(13):e00282-19.

Date published: January 1, 2019
Featured in this article: Minhui Guan, XiuFeng “Henry” Wan.

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Characterization of select wild soybean accessions in the USDA germplasm collection for seed composition and agronomic traits. La T, Large E, Taliercio E, Song Q, Gillman JD, Xu D, Nguyen HT, Shannon G, Scaboo A. Crop Science; 59(1):233-251.

Date published: January 1, 2019
Featured in this article: Dong Xu.

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Trends in Alzheimer’s disease research based upon machine learning analysis of pubmed abstracts. Guan R, Wen X, Liang Y, Xu D, He B, Feng X. International Journal of Biological Sciences; 15(10):2065-2074.

Date published: January 1, 2019
Featured in this article: Dong Xu.

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Identification and expression analysis of the GDSL esterase/lipase family genes, and the characterization of SaGLIP8 in Sedum alfredii Hance under cadmium Stress. Li H, Han X, Qiu W, Xu D, Wang Y, Yu M, Hu X, Zhuo R. PeerJ; 2019(4):e6741.

Date published: January 1, 2019
Featured in this article: Dong Xu.

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Computational prediction of ubiquitination proteins using evolutionary profiles and functional domain annotation. Qiu W, Xu C, Xiao X, Xu D. Current Genomics; 20(5):389-399.

Date published: January 1, 2019
Featured in this article: Dong Xu.

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Large expert-curated database for benchmarking document similarity detection in biomedical literature search. 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Guerra-Mora JR, Guo C, Guo X, Gupta H, He S, Heijne M, Heinemann S, Hogrebe A, Huang Z, Iskander-Rizk S, Iyer LM, Jahan Y, James AS, Joel E, Joffroy B, Jégousse C, Kambondo G, Karnati P, Kaya C, Ke A, Kelly D, Kickert R, Kidibule PE, Kieselmann JP, Kim HJ, Kitazawa T, Lamberts A, Li Y, Liang H, Linn SN, Litfin T, Liusuo W, Lygirou V, Mahato AK, Mai Z-M, Major RW, Mali S, Mallis P, Mao W, Marvin-Dowle K, Mason LD, Merideth B, Merino-Plaza MJ, Merlaen B, Messina R, Mishra AK, Muhammad J, Musinguzi C, Nanou A, Naqash A, Nguyen JT, Nguyen TTH, Ni D, Nidapl,Notcovich S, Ohst B, Ollivier QR, Osses DF, Peng X, Plantinga A, Pulia M, Rafiq M, Raman A, Raucher-Chenepv, Rawski R, Ray A, Razak LA, Rudolf K, Rusch P, Sadoine ML, Schmidt A, Schurr R, Searles S, Sharma S, Sheehan B, Shi C, Shohayeb B, Sommerlad A, Strehlow J, Sun X, Sundar R, Taherzadeh G, Tahir NDM, Tang J, Testa J, Tian Z, Tingting Q, Verheijen GP, Vickstrom C, Wang T, Wang X, Wang Z, Wei P, Wilson A, Wyartqz,Yassine A-A, Yousefzadeh A, Zare A, Zeng Z, Zhang C, Zhang H, Zhang L, Zhang T, Zhang W, Zhang Z, Zhou J, Zhu D, Adamo V, Adeyemo AA, Aggelidou M, Al-Owaifeer AM, Al-Riyami AZ, Alzghari SK, Andersen V, Angus K, Asaduzzaman M, Asady H, Ato D, Bai X, Baines RL, Ballantyne M, Ban B, Beck J, Ben-Nafa W, Black E, Blancher A, Blankstein R, Bodagh N, Borges P, Brooks A, Brox-Ponce J, Brunetti A, Canham CD, Carninci P, Carvajal R, Chang SC, Chao J, Chatterjee P, Chen H, Chen L, Chen Y-C, Chhatriwalla AK, Chikowe I, Chuang T-J, Collevatti RG, Cornejo DAV, Cuenda A, Dao M, Dauga D, Deng Z, Devkota K, Doan LV, Elewa YHA, Fan D, Faruk M, Feifei S, Ferguson TS, Fleres F, Foster EJ, Foster S, Furer T, Gao Y, Garcia-Rivera EJ, Gazdar A, George RB, Ghosh S, Gianchecchi E, Gleason JM, Hackshaw A, Hall A, Hall R, Harper P, Hogg WE, Huang G, Hunter KE, Ijzerman AP, Jesus C, Jian G, Lewis JS, Jr, Kanj SS, Kaur H, Kelly S, Kheir F, Kichatova VS, Kiyani M, Klein R, Kovesi T, Kraschnewski JL, Kumar AP, Labutin D, Lazo-Langner A, Leclercq G, Li M, Li Q, Li T, Li Y, Liao W-T, Liao Z-Y, Lin J, Lizer J, Lobreglio G, Lowies C, Lu C, Majeed H, Martin A, Martinez-Sobrido L, Meresh E, Middelveen M, Mohebbi A, Mota J, Mozaheb Z, Muyaya L, Nandhakumar A, Ng SHX, Obeidat M, Oh D-H, Owais M, Pace-Asciak P, Panwar A, Park C, Patterson C, Penagos-Tabaree F, Pianosi PT, Pinzi V, Pridans C, Psaroulaki A, Pujala RK, Pulido-Arjona L, Qi P-F, Rahman P, Rai NK, Rassaf T, Refardt J, Ricciardi W, Riess O, Rovas A, Sacks FM, Saleh S, Sampson C, Schmutz A, Sepanski R, Sharma N, Singh M, Spearman P, Subramaniapillai M, Swali R, Tan CM, Tellechea JI, Thomas L-M, Tong X, Vavvas DG, Veys R, Vitriol V, Wang H-D, Wang J, Wang J, Waugh J, Webb SA, Williams BA, Workman AD, Xiang T, Xie L-X, Xu J, Xu T, Yang C, Yoon JG, Yuan CM, Zaritsky A, Zhang Y, Zhao H, Zuckerman H, Lyu R, Pullan W. Database; 2019:1-67.

Date published: January 1, 2019
Featured in this article: Dong Xu.

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2018

MetExpert: An expert system to enhance gas chromatography‒mass spectrometry-based metabolite identifications. Qiu F, Lei Z, Sumner LW. Analytical Chimica Acta; 1037:316-326.

Date published: December 11, 2018
Featured in this article: Zhentian Lei, Lloyd Sumner.

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First genome-wide CNV mapping in FELIS CATUS using next generation sequencing data. Genova F, Longeri M, Lyons LA, Bagnato A, Gandolfi B, Aberdein D, Alves PC, Barsh GS, Beale HC, Bergström TF, Boyko AR, Brockman JA, Castelhano MG, Chan PP, Davis BW, Distl O, Dodman NH, Matthew Ellinwood N, Fogle JE, Forman OP, Garrick DJ, Häggström J, Helps CR, Hytönen MK, Ibrahim DM, Kaukonen M, Kaelin CB, Leclerc E, Lear TL, Leeb T, Lohi H, Lupiáñez DG, Magnuson MA, Malik R, Montague MJ, Munday JS, Murphy WJ, Ostrander EA, Pedersen NC, Petersen-Jones SM, Rothschild MF, Shapiro B, Stern JA, Swanson WF, Terio KA, Todhunter RJ, Ueda Y, Warren WC, Wilcox EA, Wildschutte JH, Ginns EI, Strillacci MG. BMC Genomics; 19(1):895.

Date published: December 10, 2018
Featured in this article: Wes Warren.

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Poly-Target Selection Identifies Broad-Spectrum RNA Aptamers. Alam KK, Chang JL, Lange MJ, Nguyen PDM, Sawyer AW, Burke DH. Molecular Therapy - Nucleic Acids; 13:605-619.

Date published: December 7, 2018
Featured in this article: Margaret Lange, Donald Burke-Agüero.

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Generation and evaluation of modified opaque-2 popcorn suggests a route to quality protein popcorn. Ren Y, Yobi A, Marshall L, Angelovici R, Rodriguez O, Holding DR. Frontiers in Plant Science; 871:1803.

Date published: December 6, 2018
Featured in this article: Abou Yobi, Ruthie Angelovici.

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A High-Throughput Absolute-Level Quantification of Protein-Bound Amino Acids in Seeds. Yobi A, Angelovici R. Current protocols in plant biology; 3(4):e20084.

Date published: December 1, 2018
Featured in this article: Abou Yobi, Ruthie Angelovici.

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Erratum to: AT-RvD1 Promotes Resolution of Inflammation in NOD/ShiLtJ mice (Scientific Reports, (2017), 7, 1, (45525), 10.1038/srep45525). Wang C-S, Maruyama CL, Easley JT, Trump BG, Baker OJ. Scientific Reports; 8(1):15220.

Date published: December 1, 2018
Featured in this article: Olga Baker.

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Modular cell-internalizing aptamer nanostructure enables targeted delivery of large functional RNAs in cancer cell lines. Porciani D, Cardwell LN, Tawiah KD, Alam KK, Lange MJ, Daniels MA, Burke DH. Nature Communications; 9(1):2283.

Date published: December 1, 2018
Featured in this article: David Porciani, Margaret Lange, Donald Burke-Agüero.

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Phylogenetic analysis of the CDGSH iron-sulfur binding domain reveals its ancient origin. Sengupta S, Nechushtai R, Jennings PA, Onuchic JN, Padilla PA, Azad RK, Mittler R. Scientific Reports; 8(1):4840.

Date published: December 1, 2018
Featured in this article: Ron Mittler.

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Local and systemic metabolic responses during light-induced rapid systemic signaling. Choudhury FK, Devireddy AR, Azad RK, Shulaev V, Mittler R. Plant Physiology; 178(4):1461-1472.

Date published: December 1, 2018
Featured in this article: Ron Mittler.

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The DNA binding landscape of the maize AUXIN RESPONSE FACTOR family. Galli M, Khakhar A, Lu Z, Chen Z, Sen S, Joshi T, Nemhauser JL, Schmitz RJ, Gallavotti A. Nature Communications; 9(1):4526.

Date published: December 1, 2018
Featured in this article: Sidharth Sen, Trupti Joshi.

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Analyses of HIV-1 integrase sequences prior to South African national HIV-Treatment program and available of integrase inhibitors in Cape Town, South Africa. Brado D, Obasa AE, Ikomey GM, Cloete R, Singh K, Engelbrecht S, Neogi U, Jacobs GB. Scientific Reports; 8(1):4709.

Date published: December 1, 2018
Featured in this article: Kamlendra Singh.

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Metabolomics of two pecan varieties provides insights into scab resistance. Lei Z, Kranawetter C, Sumner BW, Huhman D, Wherritt DJ, Thomas AL, Rohla C, Sumner LW. Metabolites; 8(4):56.

Date published: December 1, 2018
Featured in this article: Zhentian Lei, Clayton Kranawetter, Barbara Sumner, Lloyd Sumner.

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Identifying antibacterial compounds in black walnuts (Juglans nigra) using a metabolomics approach. Ho K-V, Lei Z, Sumner LW, Coggeshall MV, Hsieh H-Y, Stewart GC, Lin C-H. Metabolites; 8(4):58.

Date published: December 1, 2018
Featured in this article: Zhentian Lei, Lloyd Sumner.

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Soy-Induced Fecal Metabolome Changes in Ovariectomized and Intact Female Rats: Relationship with Cardiometabolic Health. Veira-Potter VJ, Cross T-WL, Swanson KS, Sarma SJ, Lei Z, Sumner LW, Rosenfeld CS. Scientific Reports; 8(1):16896.

Date published: December 1, 2018
Featured in this article: Saurav Sarma, Zhentian Lei, Lloyd Sumner.

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Proteomic characterization of bradyrhizobium diazoefficiens bacteroids reveals a post-symbiotic, hemibiotrophic-like lifestyle of the bacteria within senescing soybean nodules. Strodtman KN, Frank S, Stevenson S, Thelen JJ, Emerich DW. International Journal of Molecular Sciences; 19(12):3947.

Date published: December 1, 2018
Featured in this article: Jay Thelen.

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Evolutionary pathway for the 2017 emergence of a novel highly pathogenic avian influenza A(H7N9) virus among domestic poultry in Tennessee, United States. Li L, DeLiberto TJ, Killian ML, Torchetti MK, Wan X-F. Virology; 525:32-39.

Date published: December 1, 2018
Featured in this article: XiuFeng “Henry” Wan.

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Tissue tropisms opt for transmissible reassortants during avian and swine influenza A virus co-infection in swine. Zhang X, Sun H, Cunningham FL, Li L, Hanson-Dorr K, Hopken MW, Cooley J, Long L-P, Baroch JA, Li T, Schmit BS, Lin X, Olivier AK, Jarman RG, DeLiberto TJ, Wan X-F. PLoS Pathogens; 14(12):e1007417.

Date published: December 1, 2018
Featured in this article: Liping Long, XiuFeng “Henry” Wan.

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Author Correction: Applications and efficiencies of the first cat 63K DNA array (Scientific Reports DOI: 10.1038/s41598-018-25438-0). Gandolfi B, Alhaddad H, Abdi M, Bach LH, Creighton EK, Davis BW, Decker JE, Dodman NH, Grahn JC, Grahn RA, Haase B, Haggstrom J, Hamilton MJ, Helps CR, Kurushima JD, Lohi H, Longeri M, Malik R, Meurs KM, Montague MJ, Mullikin JC, Murphy WJ, Nilson SM, Pedersen NC, Peterson CB, Rusbridge C, Saif R, Shelton DG, Warren WC, Wasim M, Lyons LA. Scientific Reports; 8(1):8746.

Date published: December 1, 2018
Featured in this article: Wes Warren.

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Long-term experimental hybridisation results in the evolution of a new sex chromosome in swordtail fish. Franchini P, Jones JC, Xiong P, Kneitz S, Gompert Z, Warren WC, Walter RB, Meyer A, Schartl M. Nature Communications; 9(1):5136.

Date published: December 1, 2018
Featured in this article: Wes Warren.

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Gene expression variation and parental allele inheritance in a Xiphophorus interspecies hybridization model. Lu Y, Boswell M, Boswell W, Kneitz S, Klotz B, Savage M, Salinas R, Marks R, Regneri J, Postlethwait J, Warren WC, Schartl M, Walter R. PLoS Genetics; 14(12):e1007875.

Date published: December 1, 2018
Featured in this article: Wes Warren.

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An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12. Keasar C, McGuffin LJ, Wallner B, Chopra G, Adhikari B, Bhattacharya D, Blake L, Bortot LO, Cao R, Dhanasekaran BK, Dimas I, Faccioli RA, Faraggi E, Ganzynkowicz R, Ghosh S, Ghosh S, Giełdoń A, Golon L, He Y, Heo L, Hou J, Khan M, Khatib F, Khoury GA, Kieslich C, Kim DE, Krupa P, Lee GR, Li H, Li J, Lipska A, Liwo A, Maghrabi AHA, Mirdita M, Mirzaei S, Mozolewska MA, Onel M, Ovchinnikov S, Shah A, Shah U, Sidi T, Sieradzan AK, Ślusarz M, Ślusarz R, Smadbeck J, Tamamis P, Trieber N, Wirecki T, Yin Y, Zhang Y, Bacardit J, Baranowski M, Chapman N, Cooper S, Defelicibus A, Flatten J, Koepnick B, Popović Z, Zaborowski B, Baker D, Cheng J, Czaplewski C, Delbem ACB, Floudas C, Kloczkowski A, Ołdziej S, Levitt M, Scheraga H, Seok C, Söding J, Vishveshwara S, Xu D, Caglar A, Coral A, MacMillan A, Lubow A, Failer B, Kestemont B, Landers CR, Painter CR, Garnier C, Sellin C, Janz D, Wheeler DC, Simon V, Flear DM, Croze E, McIlvaine GV, Beecher G, Lawrie G, Ykman G, Feldmann H, Fuentes HK, Terumasa H, Kovanecz I, Longino JA III, Nijland JH, Diderich JA, Canfield JM, Eriksson J, Slone JD, Appel JG, Mitchell J, Mitch J, Loots-Boiy J, Brownlee JM, Wilson K, Clayton KT, Deford KE, Abbey KJ, Withers L, Wei L, Ives L, Miller LA, Carpenter L, Sharma MG, Ricci M, Binfield MS, Davids MJ, Gaebel M, Cassidy MD, Fagiola M, Pfützenreuter M, Barlow N, Triggiani PJ IV, Innes RBM, Leduc R, Dos Santos Gomes RLC, Morneau RLR, Zaccanelli SJ, Kleinfelter SC, Van Der Laan TJA, Bausewein T, George TJ, Mikhail V, Barmettler W, Crivelli SN. Scientific Reports; 8(1):9939.

Date published: December 1, 2018
Featured in this article: Dong Xu.

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Improving Protein Gamma-Turn Prediction Using Inception Capsule Networks. Fang C, Shang Y, Xu D. Scientific Reports; 8(1):15741.

Date published: December 1, 2018
Featured in this article: Dong Xu.

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Large-scale prediction of protein ubiquitination sites using a multimodal deep architecture. He F, Wang R, Li J, Bao L, Xu D, Zhao X. BMC Systems Biology; 12:109.

Date published: November 22, 2018
Featured in this article: Dong Xu.

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The anti-apoptotic proteins NAF-1 and iASPP interact to drive apoptosis in cancer cells. Iosub-Amir A, Bai F, Sohn Y-S, Song L, Tamir S, Marjault H-B, Mayer G, Karmi O, Jennings PA, Mittler R, Onuchic JN, Friedler A, Nechushtai R. Chemical Science; 10(3):665-673.

Date published: November 20, 2018
Featured in this article: Ron Mittler.

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Central roles and regulatory mechanisms of dual-specificity MAPK phosphatases in developmental and stress signaling. Jiang L, Chen Y, Luo L, Peck SC. Frontiers in Plant Science; 871:1697.

Date published: November 20, 2018
Featured in this article: Scott Peck.

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Genomic analyses based on pulmonary adenocarcinoma in situ reveal early lung cancer signature 11 Medical and Health Sciences 1112 Oncology and Carcinogenesis. Li D, Yang W, Zhang Y, Yang JY, Guan R, Xu D, Yang MQ. BMC Medical Genomics; 11:106.

Date published: November 20, 2018
Featured in this article: Dong Xu.

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Erratum to: Inositol phosphates are assembly co-factors for HIV-1 (Nature, (2018), 560, 7719, (509-512), 10.1038/s41586-018-0396-4). Dick RA, Zadrozny KK, Xu C, Schur FKM, Lyddon TD, Ricana CL, Wagner JM, Perilla JR, Ganser-Pornillos BK, Johnson MC, Pornillos O, Vogt VM. Nature; 563(7731):E22.

Date published: November 15, 2018
Featured in this article: Terri Lyddon, Marc Johnson.

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Integrating networks, Phylogenomics, and population genomics for the study of polyploidy. Blischak PD, Mabry ME, Conant GC, Pires JC. Annual Review of Ecology, Evolution, and Systematics; 49(2):253-278.

Date published: November 2, 2018
Featured in this article: J. Chris Pires.

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Monocot plastid phylogenomics, timeline, net rates of species diversification, the power of multi-gene analyses, and a functional model for the origin of monocots. Givnish TJ, Zuluaga A, Spalink D, Soto Gomez M, Lam VKY, Saarela JM, Sass C, Iles WJD, de Sousa DJL, Leebens-Mack J, Chris Pires J, Zomlefer WB, Gandolfo MA, Davis JI, Stevenson DW, dePamphilis C, Specht CD, Graham SW, Barrett CF, Ané C. American Journal of Botany; 105(11):1888-1910.

Date published: November 1, 2018
Featured in this article: J. Chris Pires.

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Abatement of 2,4-D by H₂O₂ solar photolysis and solar photo-Fenton-like process with minute Fe(III) concentrations. Serra-Clusellas A, De Angelis L, Lin C-H, Vo P, Bayati M, Sumner L, Lei Z, Amaral NB, Bertini LM, Mazza J, Pizzio LR, Stripeikis JD, Rengifo-Herrera JA, Fidalgo de Cortalezzi MM. Water Research; 144:572-580.

Date published: November 1, 2018
Featured in this article: Lloyd Sumner, Zhentian Lei.

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The role of gene flow in rapid and repeated evolution of cave-related traits in Mexican tetra, Astyanax mexicanus. Herman A, Brandvain Y, Weagley J, Jeffery WR, Keene AC, Kono TJY, Bilandžija H, Borowsky R, Espinasa L, O'Quin K, Ornelas-García CP, Yoshizawa M, Carlson B, Maldonado E, Gross JB, Cartwright RA, Rohner N, Warren WC, McGaugh SE. Molecular Ecology; 27(22):4397-4416.

Date published: November 1, 2018
Featured in this article: Wes Warren.

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Erratum to: Ancient hybridization and strong adaptation to viruses across African vervet monkey populations (Nature Genetics, (2017), 49, 12, (1705-1713), 10.1038/ng.3980). Svardal H, Jasinska AJ, Apetrei C, Coppola G, Huang Y, Schmitt CA, Jacquelin B, Ramensky V, Müller-Trutwin M, Antonio M, Weinstock G, Grobler JP, Dewar K, Wilson RK, Turner TR, Warren WC, Freimer NB, Nordborg M. Nature Genetics; 50(11):1617.

Date published: November 1, 2018
Featured in this article: Wes Warren.

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Imprinting of repeated influenza A/H3 exposures on antibody quantity and antibody quality: Implications for seasonal vaccine strain selection and vaccine performance. Kosikova M, Li L, Radvak P, Ye Z, Wan X-F, Xie H. Clinical Infectious Diseases; 67(10):1523-1532.

Date published: October 30, 2018
Featured in this article: XiuFeng “Henry” Wan.

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Aptamer-displaying peptide amphiphile micelles as a cell-targeted delivery vehicle of peptide cargoes. Smith JD, Cardwell LN, Porciani D, Nguyen JA, Zhang R, Gallazzi F, Tata RR, Burke DH, Daniels MA, Ulery BD. Physical Biology; 15(6):065006.

Date published: October 22, 2018
Featured in this article: David Porciani, Fabio Gallazzi, Donald Burke-Agüero.

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βTrCP is Required for HIV-1 Vpu Modulation of CD4, GaLV Env, and BST-2/Tetherin. Song YE, Cyburt D, Lucas TM, Gregory DA, Lyddon TD, Johnson MC. Viruses; 10(10):573.

Date published: October 19, 2018
Featured in this article: Terri Lyddon, Marc Johnson.

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Phosphate deficiency negatively affects early steps of the symbiosis between common bean and Rhizobia. Isidra-Arellano MC, Reyero-Saavedra MR, Sánchez-Correa MS, Pingault L, Sen S, Joshi T, Girard L, Castro-Guerrero NA, Mendoza-Cozatl DG, Libault M, Valdés-López O. Genes; 9(10):498.

Date published: October 15, 2018
Featured in this article: Sidharth Sen, Trupti Joshi, Norma Castro-Guerrero, David Mendoza-Cózatl.

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Changes in iron availability in Arabidopsis are rapidly sensed in the leaf vasculature and impaired sensing leads to opposite transcriptional programs in leaves and roots. Khan MA, Castro-Guerrero NA, McInturf SA, Nguyen NT, Dame AN, Wang J, Bindbeutel RK, Joshi T, Jurisson SS, Nusinow DA, Mendoza-Cozatl DG. Plant Cell and Enviroment; 41(10):2263-2276.

Date published: October 1, 2018
Featured in this article: Norma Castro-Guerrero, Trupti Joshi, David Mendoza-Cózatl.

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Contribution of a multifunctional polymerase region of footand-mouth disease virus to lethal mutagenesis. De La Higuera I, Ferrer-Octa C, Moreno E, De Ávila AI, Soria ME, Singh K, Caridi F, Sobrino F, Sarafianos SG, Perales C, Verdaguer N, Domingo E. Journal of Virology; 92(20):e01119.

Date published: October 1, 2018
Featured in this article: Kamlendra Singh.

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Antiretroviral potency of 4⁰-ethnyl-2⁰-fluoro-2⁰-deoxyadenosine, tenofovir alafenamide and second-generation NNRTIs across diverse HIV-1 subtypes. Njenda DT, Aralaguppe SG, Singh K, Rao R, Sönnerborg A, Sarafianos SG, Neogi U. Journal of Antimicrobial Chemotherapy; 73(10):2721-2728.

Date published: October 1, 2018
Featured in this article: Kamlendra Singh.

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Genetic evidence supports sporadic and independent introductions of subtype H5 low-pathogenic avian influenza A viruses from wild birds to domestic poultry in North America. Li L, Bowman AS, DeLiberto TJ, Killian ML, Krauss S, Nolting JM, Torchetti MK, Ramey AM, Reeves AB, Stallknecht DE, Webby RJ, Wan X-F. Journal of Virology; 92(19):e00913.

Date published: October 1, 2018
Featured in this article: XiuFeng “Henry” Wan.

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A content-based recommender system for computer science publications. Wang D, Liang Y, Xu D, Feng X, Guan R. Knowledge-Based Systems; 157:1-9.

Date published: October 1, 2018
Featured in this article: Dong Xu.

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A Direct Comparison of IV and ICV Delivery Methods for Gene Replacement Therapy in a Mouse Model of SMARD1. Shababi M, Villalón E, Kaifer KA, DeMarco V, Lorson CL. Molecular Therapy - Methods and Clinical Development; 10:348-360.

Date published: September 21, 2018
Featured in this article: Christian Lorson.

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Docosahexaenoic acid (DHA): An essential nutrient and a nutraceutical for brain health and diseases. Sun GY, Simonyi A, Fritsche KL, Chuang DY, Hannink M, Gu Z, Greenlief CM, Yao JK, Lee JC, Beversdorf DQ. Prostaglandins Leukotrienes and Essential Fatty Acids; 136:3-13.

Date published: September 1, 2018
Featured in this article: Mark Hannink, Michael Greenlief.

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Rapid Accumulation of Glutathione During Light Stress in Arabidopsis. Choudhury FK, Devireddy AR, Azad RK, Shulaev V, Mittler R. Plant and Cell Physiology; 59(9):1817-1826.

Date published: September 1, 2018
Featured in this article: Ron Mittler.

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Transcriptome-wide comparison of selenium hyperaccumulator and nonaccumulator Stanleya species provides new insight into key processes mediating the hyperaccumulation syndrome. Wang J, Cappa JJ, Harris JP, Edger PP, Zhou W, Pires JC, Adair M, Unruh SA, Simmons MP, Schiavon M, Pilon-Smits EAH. Plant Biotechnology Journal; 16(9):1582-1594.

Date published: September 1, 2018
Featured in this article: J. Chris Pires.

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Observed metabolic asymmetry within soybean root nodules reflects unexpected complexity in rhizobacteria-legume metabolite exchange. Veličković D, Agtuca BJ, Stopka SA, Vertes A, Koppenaal DW, Paša-Tolić L, Stacey G, Anderton CR. ISME Journal; 12(9):2335-2338.

Date published: September 1, 2018
Featured in this article: Gary Stacey.

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Mutation W222L at the receptor binding site of hemagglutinin could facilitate viral adaption from equine Influenza A(H3N8) virus to dogs. Wen F, Blackmon S, Olivier AK, Li L, Guan M, Sun H, Wang PG, Wan X-F. Journal of Virology; 92(18):e01115.

Date published: September 1, 2018
Featured in this article: Minhui Guan, XiuFeng “Henry” Wan.

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Inositol phosphates are assembly co-factors for HIV-1. Dick RA, Zadrozny KK, Xu C, Schur FKM, Lyddon TD, Ricana CL, Wagner JM, Perilla JR, Ganser-Pornillos BK, Johnson MC, Pornillos O, Vogt VM. Nature; 560(7719):509-512.

Date published: August 23, 2018
Featured in this article: Terri Lyddon, Marc Johnson.

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Tcp transcription factors interact with npr1 and contribute redundantly to systemic acquired resistance. Li M, Chen H, Chen J, Chang M, Palmer IA, Gassmann W, Liu F, Fu ZQ. Frontiers in Plant Science; 9:1153.

Date published: August 14, 2018
Featured in this article: Walter Gassmann.

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Embryogenic Competence Acquisition in Sugar Cane Callus Is Associated with Differential H ⁺ -Pump Abundance and Activity. Passamani LZ, Bertolazi AA, Ramos AC, Santa-Catarina C, Thelen JJ, Silveira V. Journal of Proteome Research; 17(8):2767-2779.

Date published: August 3, 2018
Featured in this article: Jay Thelen.

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Structural implications of genotypic variations in HIV-1 integrase from diverse subtypes. Rogers L, Obasa AE, Jacobs GB, Sarafianos SG, Sönnerborg A, Neogi U, Singh K. Frontiers in Microbiology; 9(AUG):1754.

Date published: August 2, 2018
Featured in this article: Kamlendra Singh.

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Editing of an alpha-kafirin gene family increases digestibility and protein quality in sorghum. Li A, Jia S, Yobi A, Ge Z, Sato SJ, Zhang C, Angelovici R, Clemente TE, Holding DR. Plant Physiology; 177(4):1425-1438.

Date published: August 1, 2018
Featured in this article: Abou Yobi, Ruthie Angelovici.

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Molecular adaptations for sensing and securing prey and insight into amniote genome diversity from the garter snake genome. Perry BW, Card DC, Mcglothlin JW, Pasquesi GIM, Adams RH, Schield DR, Hales NR, Corbin AB, Demuth JP, Horrmann FG, Vandewege MW, Schott RK, Bhattacharyya N, Chang BSW, Casewell NR, Whiteley G, Reyes-Velasco J, Mackessy SP, Gamble T, Storey KB, Biggar KK, Passow CN, Kuo C-H, Mcgaugh SE, Bronikowski AM, De Koning APJ, Edwards SV, Pfrender ME, Minx P, Brodie ED, Brodie ED, Warren WC, Castoe TA. Genome Biology and Evolution; 10(8):2110-2129.

Date published: August 1, 2018
Featured in this article: Wes Warren.

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Variation in seed allergen content from three varieties of soybean cultivated in nine different locations in Iowa, Illinois, and Indiana. McClain S, Stevenson SE, Brownie C, Herouet-Guicheney C, Herman RA, Ladics GS, Privalle L, Ward JM, Doerrer N, Thelen JJ. Frontiers in Plant Science; 9:1025.

Date published: July 23, 2018
Featured in this article: Jay Thelen.

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Parvovirus minute virus of mice interacts with sites of cellular DNA damage to establish and amplify its lytic infection. Majumder K, Wang J, Boftsi M, Fuller MS, Rede JE, Joshi T, Pintel DJ. eLife; 7:e37750.

Date published: July 20, 2018
Featured in this article: Juexin Wang, Maria Boftsi, Trupti Joshi.

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CarbonylDB: A curated data-resource of protein carbonylation sites. Prasad Rao RS, Zhang N, Xu D, MaxMoøller I. Bioinformatics; 34(14):2518-2520.

Date published: July 15, 2018
Featured in this article: Dong Xu.

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The G-Protein–Coupled Receptor ALX/Fpr2 Regulates Adaptive Immune Responses in Mouse Submandibular Glands. Wang C-S, Baker OJ. American Journal of Pathology; 188(7):1555-1562.

Date published: July 1, 2018
Featured in this article: Olga Baker.

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Pathogen-induced AdDjSKI of the wild peanut, Arachis diogoi, potentiates tolerance of multiple stresses in E. coli and tobacco. Rampuria S, Bag P, Rogan CJ, Sharma A, Gassmann W, Kirti PB. Plant Science; 272:62-74.

Date published: July 1, 2018
Featured in this article: Walter Gassmann.

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Increased transpiration is correlated with reduced boron deficiency symptoms in the maize tassel-less1 mutant. Matthes MS, Robil JM, Tran T, Kimble A, McSteen P. Physiologia Plantarum; 163(3):344-355.

Date published: July 1, 2018
Featured in this article: Jan Lorie Robil, Paula McSteen.

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ROS-induced ROS release in plant and animal cells. Zandalinas SI, Mittler R. Free Radical Biology and Medicine; 122:21-27.

Date published: July 1, 2018
Featured in this article: Ron Mittler.

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P2Y2R deletion ameliorates sialadenitis in IL-14α-transgenic mice. Woods LT, Camden JM, Khalafalla MG, Petris MJ, Erb L, Ambrus JL Jr, Weisman GA. Oral Diseases; 24(5):761-771.

Date published: July 1, 2018
Featured in this article: Lucas Woods, Jean Camden, Michael Petris, Gary Weisman.

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Homoeologous exchange is a major cause of gene presence/absence variation in the amphidiploid Brassica napus. Hurgobin B, Golicz AA, Bayer PE, Chan C-KK, Tirnaz S, Dolatabadian A, Schiessl SV, Samans B, Montenegro JD, Parkin IAP, Pires JC, Chalhoub B, King GJ, Snowdon R, Batley J, Edwards D. Plant Biotechnology Journal; 16(7):1265-1274.

Date published: July 1, 2018
Featured in this article: J. Chris Pires.

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The Physcomitrella patens gene atlas project: large-scale RNA-seq based expression data. Perroud P-F, Haas FB, Hiss M, Ullrich KK, Alboresi A, Amirebrahimi M, Barry K, Bassi R, Bonhomme S, Chen H, Coates JC, Fujita T, Guyon-Debast A, Lang D, Lin J, Lipzen A, Nogué F, Oliver MJ, Ponce de León I, Quatrano RS, Rameau C, Reiss B, Reski R, Ricca M, Saidi Y, Sun N, Szövényi P, Sreedasyam A, Grimwood J, Stacey G, Schmutz J, Rensing SA. Plant Journal; 95(1):168-182.

Date published: July 1, 2018
Featured in this article: Gary Stacey.

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AtOPT6 protein functions in long-distance transport of glutathione in arabidopsis thaliana. Wongkaew A, Asayama K, Kitaiwa T, Nakamura S-I, Kojima K, Stacey G, Sekimoto H, Yokoyama T, Ohkama-Ohtsu N. Plant and Cell Physiology; 59(7):1443-1451.

Date published: July 1, 2018
Featured in this article: Gary Stacey.

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Comparison of Xiphophorus and human melanoma transcriptomes reveals conserved pathway interactions. Lu Y, Boswell M, Boswell W, Kneitz S, Hausmann M, Klotz B, Regneri J, Savage M, Amores A, Postlethwait J, Warren W, Schartl M, Walter R. Pigment Cell and Melanoma Research; 31(4):496-508.

Date published: July 1, 2018
Featured in this article: Wes Warren.

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High-resolution comparative analysis of great ape genomes. Kronenberg ZN, Fiddes IT, Gordon D, Murali S, Cantsilieris S, Meyerson OS, Underwood JG, Nelson BJ, Chaisson MJP, Dougherty ML, Munson KM, Hastie AR, Diekhans M, Hormozdiari F, Lorusso N, Hoekzema K, Qiu R, Clark K, Raja A, Welch AE, Sorensen M, Baker C, Fulton RS, Armstrong J, Graves-Lindsay TA, Denli AM, Hoppe ER, Hsieh P, Hill CM, Pang AWC, Lee J, Lam ET, Dutcher SK, Gage FH, Warren WC, Shendure J, Haussler D, Schneider VA, Cao H, Ventura M, Wilson RK, Paten B, Pollen A, Eichler EE. Science; 360(6393):eaar6343.

Date published: June 8, 2018
Featured in this article: Wes Warren.

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Controlled chemical modification of biomolecules by femtosecond laser in polar liquids. Gruzdev V, Korkin D, Mooney BP, Havelund JF, Møller IM, Thelen JJ. Proceedings - International Conference Laser Optics 2018, ICLO 2018; 595.

Date published: June 4, 2018
Featured in this article: Brian Mooney, Jay Thelen.

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The unique fold and lability of the [2Fe-2S] clusters of NEET proteins mediate their key functions in health and disease. Karmi O, Marjault H-B, Pesce L, Carloni P, Onuchic JN, Jennings PA, Mittler R, Nechushtai R. Journal of Biological Inorganic Chemistry; 23(4):599-612.

Date published: June 1, 2018
Featured in this article: Ron Mittler.

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Evidence for plant-derived xenomiRs based on a large-scale analysis of public small RNA sequencing data from human samples. Zhao Q, Liu Y, Zhang N, Hu M, Zhang H, Joshi T, Xu D. PLoS ONE; 13(6):e0187519.

Date published: June 1, 2018
Featured in this article: Trupti Joshi, Dong Xu.

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Influenza D virus infection in feral swine populations, United States. Ferguson L, Luo K, Olivier AK, Cunningham FL, Blackmon S, Hanson-Dorr K, Sun H, Baroch J, Lutman MW, Quade B, Epperson W, Webby R, DeLiberto TJ, Wan X-F. Emerging Infectious Diseases; 24(6):1020-1028.

Date published: June 1, 2018
Featured in this article: XiuFeng “Henry” Wan.

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Expression signatures of early-stage and advanced medaka melanomas. Klotz B, Kneitz S, Regensburger M, Hahn L, Dannemann M, Kelso J, Nickel B, Lu Y, Boswell W, Postlethwait J, Warren W, Kunz M, Walter RB, Schartl M. Comparative Biochemistry and Physiology Part - C: Toxicology and Pharmacology; 208:20-28.

Date published: June 1, 2018
Featured in this article: Wes Warren.

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G2S: A web-service for annotating genomic variants on 3D protein structures. Wang J, Sheridan R, Sumer SO, Schultz N, Xu D, Gao J. Bioinformatics; 34(11):1949-1950.

Date published: June 1, 2018
Featured in this article: Dong Xu.

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Diversity of immunoglobulin light chain genes in non-teleost ray-finned fish uncovers IgL subdivision into five ancient isotypes. Guselnikov SV, Baranov KO, Najaskshin AM, Mechetina LV, Chikaev NA, Makunin AI, Kulemzin SV, Andreyushkova DA, Stöck M, Wuertz S, Gessner J, Warren WC, Schartl M, Trifonov VA, Taranin AV. Frontiers in Immunology; 9(MAY):1079.

Date published: May 28, 2018
Featured in this article: Wes Warren.

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MU-LOC: A machine-learning method for predicting mitochondrially localized proteins in plants. Zhang N, Rao RSP, Salvato F, Havelund JF, Møller IM, Thelen JJ, Xu D. Frontiers in Plant Science; 9:634.

Date published: May 23, 2018
Featured in this article: Jay Thelen, Dong Xu.

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Controlled laser biochemistry in room-temperature polar liquids by ultrashort laser pulses. Gruzdev V, Korkin D, Mooney BP, Havelund JF, Møller IM, Thelen JJ. Optics InfoBase Conference Papers; Part F92-CLEO_AT 2018:Code 139958.

Date published: May 13, 2018
Featured in this article: Brian Mooney, Jay Thelen.

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Controlled laser biochemistry in room-temperature polar liquids by ultrashort laser pulses. Gruzdev V, Korkin D, Mooney BP, Havelund JF, Møller IM, Thelen JJ. 2018 Conference on Lasers and Electro-Optics, CLEO 2018 - Proceedings; 8426282.

Date published: May 13, 2018
Featured in this article: Brian Mooney, Jay Thelen.

In Vivo Quantitative Monitoring of Subunit Stoichiometry for Metabolic Complexes. Wilson RS, Thelen JJ. Journal of Proteome Research; 17(5):1773-1783.

Date published: May 4, 2018
Featured in this article: Jay Thelen.

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Erratum: Author Correction: Genome-Guided Phylo-Transcriptomic Methods and the Nuclear Phylogenetic Tree of the Paniceae Grasses (Scientific reports (2017) 7 1 (13528)). Washburn JD, Schnable JC, Conant GC, Brutnell TP, Shao Y, Zhang Y, Ludwig M, Davidse G, Pires JC. Scientific Reports; 8(1):7120.

Date published: May 2, 2018
Featured in this article: J. Chris Pires.

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Genome-wide nucleotide diversity and associations with geography, ploidy level and glucosinolate profiles in Aethionema arabicum (Brassicaceae). Mohammadin S, Wang W, Liu T, Moazzeni H, Ertugrul K, Uysal T, Christodoulou CS, Edger PP, Pires JC, Wright SI, Schranz ME. Plant Systematics and Evolution; 304(5):619-630.

Date published: May 1, 2018
Featured in this article: J. Chris Pires.

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Gene expression profiles of ion channels and receptors in mouse resistance arteries: Effects of cell type, vascular bed, and age. Boerman EM, Sen S, Shaw RL, Joshi T, Segal SS. Microcirculation; 25(4):e12452.

Date published: May 1, 2018
Featured in this article: Sidharth Sen, Trupti Joshi.

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Pathway-specific metabolome analysis with ¹⁸ O ₂ -labeled Medicago truncatula via a mass spectrometry-based approach. Kera K, Find DD, Wherritt DJ, Nagashima Y, Shimada N, Ara T, Ogata Y, Sumner LW, Suzuki H. Metabolomics; 14(5):71.

Date published: May 1, 2018
Featured in this article: Lloyd Sumner.

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Improved genome assembly and annotation for the Rock Pigeon (Columba livia). Holt C, Campbell M, Keays DA, Edelman N, Kapusta A, Maclary E, Domyan ET, Suh A, Warren WC, Yandell M, Thomas P Gilbert M, Shapiro MD. G3: Genes, Genomes, Genetics; 8(5):1391-1398.

Date published: May 1, 2018
Featured in this article: Wes Warren.

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MUFOLD-SS: New deep inception-inside-inception networks for protein secondary structure prediction. Fang C, Shang Y, Xu D. Proteins: Structure, Function and Bioinformatics; 86(5):592-598.

Date published: May 1, 2018
Featured in this article: Dong Xu.

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Topological data analysis as a morphometric method: Using persistent homology to demarcate a leaf morphospace. Li M, An H, Angelovici R, Bagaza C, Batushansky A, Clark L, Coneva V, Donoghue MJ, Edwards E, Fajardo D, Fang H, Frank MH, Gallaher T, Gebken S, Hill T, Jansky S, Kaur B, Klahs PC, Klein LL, Kuraparthy V, Londo J, Migicovsky Z, Miller A, Mohn R, Myles S, Otoni WC, Pires JC, Rieffer E, Schmerler S, Spriggs E, Topp CN, Van Deynze A, Zhang K, Zhu L, Zink BM, Chitwood DH. Frontiers in Plant Science; 9:553.

Date published: April 25, 2018
Featured in this article: Hong An, Ruthie Angelovici, Clement Bagaza, J. Chris Pires.

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Acetylation and phosphorylation of human TFAM regulate TFAM-DNA interactions via contrasting mechanisms. King GA, Hashemi Shabestari M, Taris KK-H, Pandey AK, Venkatesh S, Thilagavathi J, Singh K, Krishna Koppisetti R, Temiakov D, Roos WH, Suzuki CK, Wuite GJL. Nucleic Acids Research; 46(7):3633-3642.

Date published: April 20, 2018
Featured in this article: Kamlendra Singh.

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Erratum: Author Correction: Analyses of HIV-1 integrase sequences prior to South African national HIV-treatment program and availability of integrase inhibitors in Cape Town, South Africa (Scientific reports (2018) 8 1 (4709)). Brado D, Obasa AE, Ikomey GM, Cloete R, Singh K, Engelbrecht S, Neogi U, Jacobs GB. Scientific Reports; 8(1):6262.

Date published: April 16, 2018
Featured in this article: Kamlendra Singh.

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The pioneer bridge: A long-term, non-invasive, esthetic composite bonded bridge for the replacement of anterior teeth. Wang FS, Cera CV, Baker OJ, Janis JN. International Journal of Dentistry and Oral Science; 5(4):630-634.

Date published: April 1, 2018
Featured in this article: Olga Baker.

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Phylotranscriptomic analysis and genome evolution of the Cypripedioideae (Orchidaceae). Unruh SA, McKain MR, Lee Y-I, Yukawa T, McCormick MK, Shefferson RP, Smithson A, Leebens-Mack JH, Pires JC. American Journal of Botany; 105(4):631-640.

Date published: April 1, 2018
Featured in this article: J. Chris Pires.

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Editorial overview: Genome studies and molecular genetics: Treasure troves of evolution. Van de Peer Y, Pires JC. Current Opinion in Plant Biology; 42:iii-v.

Date published: April 1, 2018
Featured in this article: J. Chris Pires.

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Erratum: Zoonotic risk, pathogenesis, and transmission of avian-origin H3N2 canine influenza virus. [J Virol, 91, 21, (2017) (e00637-17)] DOI: 10.1128/JVI.00637-17. Sun H, Blackmon S, Yang G, Waters K, Li T, Tangwangvivat R, Xu Y, Shyu D, Wen F, Cooley J, Senter L, Lin X, Jarman R, Hanson L, Webby R, Wan X-F. Journal of Virology; 92(8):e02227-17.

Date published: April 1, 2018
Featured in this article: XiuFeng “Henry” Wan.

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Clonal polymorphism and high heterozygosity in the celibate genome of the Amazon molly. Warren WC, García-Pérez R, Xu S, Lampert KP, Chalopin D, Stöck M, Loewe L, Lu Y, Kuderna L, Minx P, Montague MJ, Tomlinson C, Hillier LW, Murphy DN, Wang J, Wang Z, Garcia CM, Thomas GCW, Volff J-N, Farias F, Aken B, Walter RB, Pruitt KD, Marques-Bonet T, Hahn MW, Kneitz S, Lynch M, Schartl M. Nature Ecology and Evolution; 2(4):669-679.

Date published: April 1, 2018
Featured in this article: Wes Warren.

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Rare Disease Mechanisms Identified by Genealogical Proteomics of Copper Homeostasis Mutant Pedigrees. Zlatic SA, Vrailas-Mortimer A, Gokhale A, Carey LJ, Scott E, Burch R, McCall MM, Rudin-Rush S, Davis JB, Hartwig C, Werner E, Li L, Petris M, Faundez V. Cell Systems; 6(3):368-380.e6.

Date published: March 28, 2018
Featured in this article: Michael Petris.

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The bacterial type III-secreted protein AvrRps4 is a bipartite effector. Halane MK, Kim SH, Spears BJ, Garner CM, Rogan CJ, Okafor EC, Su J, Bhattacharjee S, Gassmann W. PLoS Pathogens; 14(3):e1006984.

Date published: March 1, 2018
Featured in this article: Jianbin Su, Walter Gassmann.

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Family A and B DNA polymerases in cancer: Opportunities for therapeutic interventions. Shanbhag V, Sachdev S, Flores JA, Modak MJ, Singh K. Biology; 7(1):5.

Date published: March 1, 2018
Featured in this article: Vinit Shanbhag, Shrikesh C. "Rick" Sachdev, Kamlendra Singh.

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Brassicales phylogeny inferred from 72 plastid genes: A reanalysis of the phylogenetic localization of two paleopolyploid events and origin of novel chemical defenses. Edger PP, Hall JC, Harkess A, Tang M, Coombs J, Mohammadin S, Schranz ME, Xiong Z, Leebens-Mack J, Meyers BC, Sytsma KJ, Koch MA, Al-Shehbaz IA, Pires JC. American Journal of Botany; 105(3):463-469.

Date published: March 1, 2018
Featured in this article: J. Chris Pires.

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Preferential retention of genes from one parental genome after polyploidy illustrates the nature and scope of the genomic conflicts induced by hybridization. Emery M, Willis MMS, Hao Y, Barry K, Oakgrove K, Peng Y, Schmutz J, Lyons E, Pires JC, Edger PP, Conant GC. PLoS Genetics; 14(3):e1007267.

Date published: March 1, 2018
Featured in this article: J. Chris Pires.

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Patterns of population variation in two paleopolyploid eudicot lineages suggest that dosage-based selection on homeologs is long-lived. Hao Y, Washburn JD, Rosenthal J, Nielsen B, Lyons E, Edger PP, Pires JC, Conant GC. Genome Biology and Evolution; 10(3):999-1011.

Date published: March 1, 2018
Featured in this article: J. Chris Pires.

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Lipopolysaccharides trigger two successive bursts of reactive oxygen species at distinct cellular locations. Shang-guan K, Wang M, Htwe NMPS, Li P, Li Y, Qi F, Zhang D, Cao M, Kim C, Weng H, Cen H, Black IM, Azadi P, Carlson RW, Stacey G, Liang Y. Plant Physiology; 176(3):2543-2556.

Date published: March 1, 2018
Featured in this article: Gary Stacey.

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Absolute Quantitation of Plant Proteins. Ahsan N, Wilson RS, Thelen JJ. Current protocols in plant biology; 3(1):1-13.

Date published: March 1, 2018
Featured in this article: Jay Thelen.

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Mapping and confirmation of loci for salt tolerance in a novel soybean germplasm, Fiskeby III. Do TD, Vuong TD, Dunn D, Smothers S, Patil G, Yungbluth DC, Chen P, Scaboo A, Xu D, Carter TE, Nguyen HT, Grover Shannon J. Theoretical and Applied Genetics; 131(3):513-524.

Date published: March 1, 2018
Featured in this article: Dong Xu.

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Whole-exome sequencing and microRNA profiling reveal PI3K/AKT pathway’s involvement in juvenile myelomonocytic leukemia. Khan SM, Denney JE, Wang MX, Xu D. Quantitative Biology; 6(1):85-97.

Date published: March 1, 2018
Featured in this article: Dong Xu.

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Tolerance to stress combination in tomato plants: New insights in the protective role of melatonin. Martinez V, Nieves-Cordones M, Lopez-Delacalle M, Rodenas R, Mestre TC, Garcia-Sanchez F, Rubio F, Nortes PA, Mittler R, Rivero RM. Molecules; 23(3):535.

Date published: February 28, 2018
Featured in this article: Ron Mittler.

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Coordinating the overall stomatal response of plants: Rapid leaf-to-leaf communication during light stress. Devireddy AR, Zandalinas SI, Gómez-Cadenas A, Blumwald E, Mittler R. Science Signaling; 11(518):eaam9514.

Date published: February 20, 2018
Featured in this article: Ron Mittler.

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Ex-vivo antiretroviral potency of newer integrase strand transfer inhibitors cabotegravir and bictegravir in HIV type 1 non-B subtypes. Neogi U, Singh K, Aralaguppe SG, Rogers LC, Njenda DT, Sarafianos SG, Hejdeman B, Sönnerborg A. AIDS; 32(4):469-476.

Date published: February 20, 2018
Featured in this article: Kamlendra Singh.

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The genome of Austrofundulus limnaeus offers insights into extreme vertebrate stress tolerance and embryonic development. Wagner JT, Singh PP, Romney AL, Riggs CL, Minx P, Woll SC, Roush J, Warren WC, Brunet A, Podrabsky JE. BMC Genomics; 19(1):155.

Date published: February 20, 2018
Featured in this article: Wes Warren.

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Selective vulnerability in neuronal populations in nmd/SMARD1 mice. Villalón E, Shababi M, Kline R, Lorson ZC, Florea KM, Lorson CL. Human Molecular Genetics; 27(4):679-690.

Date published: February 15, 2018
Featured in this article: Christian Lorson.

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Constant vigilance: plant functions guarded by resistance proteins. Su J, Spears BJ, Kim SH, Gassmann W. Plant Journal; 93(4):637-650.

Date published: February 1, 2018
Featured in this article: Jianbin Su, Walter Gassmann.

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Self-oligomerization regulates stability of survival motor neuron protein isoforms by sequestering an SCFSlmb degron. Gray KM, Kaifer KA, Baillat D, Wen Y, Bonacci TR, Ebert AD, Raimer AC, Spring AM, Have ST, Glascock JJ, Gupta K, Van Duyne GD, Emanuele MJ, Lamond AI, Wagner EJ, Lorson CL, Gregory Matera A. Molecular Biology of the Cell; 29(2):96-110.

Date published: January 15, 2018
Featured in this article: Christian Lorson.

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“Known Unknowns”: Current Questions in Muscle Satellite Cell Biology. Cornelison DDW. Current Topics in Developmental Biology; 126:205-233.

Date published: January 1, 2018
Featured in this article: D Cornelison.

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Assembly of PGAM5 into Multimeric Complexes Provides a Mechanism for Allosteric Regulation of Phosphatase Activity. Tipton P, Su T, Hannink M. Methods in Enzymology; 607:353-372.

Date published: January 1, 2018
Featured in this article: Mark Hannink.

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Cancer as a mutation-driven evolutionary process. Hannink M, Temin HM. Growth Regulation and Carcinogenesis: Volume I; 95-97.

Date published: January 1, 2018
Featured in this article: Mark Hannink.

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Mutation-driven evolution of rev-T. Hannink M, Temin HM. Growth Regulation and Carcinogenesis: Volume I; 99-109.

Date published: January 1, 2018
Featured in this article: Mark Hannink.

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Plant adaptations to the combination of drought and high temperatures. Zandalinas SI, Mittler R, Balfagón D, Arbona V, Gómez-Cadenas A. Physiologia Plantarum; 162(1):2-12.

Date published: January 1, 2018
Featured in this article: Ron Mittler.

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Extracellular ATP acts on jasmonate signaling to reinforce plant defense. Tripathi D, Zhang T, Koo AJ, Stacey G, Tanaka K. Plant Physiology; 176(1):511-523.

Date published: January 1, 2018
Featured in this article: Gary Stacey.

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Metabolic noise and distinct subpopulations observed by single cell LAESI mass spectrometry of plant cells in situ. Stopka SA, Khattar R, Agtuca BJ, Anderton CR, Paša-Tolić L, Stacey G, Vertes A. Frontiers in Plant Science; 871:1646.

Date published: January 1, 2018
Featured in this article: Gary Stacey.

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Seminal fluid metabolome and epididymal changes after antibiotic treatment in mice. Rosenfeld CS, Javurek AB, Johnson SA, Lei Z, Sumner LW, Hess RA. Reproduction; 156(1):1-10.

Date published: January 1, 2018
Featured in this article: Zhentian Lei, Lloyd Sumner.

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A Y161F hemagglutinin substitution increases thermostability and improves yields of 2009 H1N1 influenza A virus in cells. Wen F, Li L, Zhao N, Chiang M-J, Xie-H, Cooley J, Webby R, Wang PG, Wan X-F. Journal of Virology; 92(2):e01621-17.

Date published: January 1, 2018
Featured in this article: XiuFeng “Henry” Wan.

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Applications and efficiencies of the first cat 63K DNA array. Gandolfi B, Alhaddad H, Abdi M, Bach LH, Creighton EK, Davis BW, Decker JE, Dodman NH, Grahn JC, Grahn RA, Haase B, Haggstrom J, Hamilton MJ, Helps CR, Kurushima JD, Lohi H, Longeri M, Malik R, Meurs KM, Montague MJ, Mullikin JC, Murphy WJ, Nilson SM, Pedersen NC, Peterson CB, Rusbridge C, Saif R, Shelton DG, Warren WC, Wasim M, Lyons LA. Scientific Reports; 8(1):7024.

Date published: January 1, 2018
Featured in this article: Wes Warren.

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Why is a high temperature needed by Thermus thermophilus argonaute during mRNA silencing: A theoretical study. Liu Y, Yu Z, Zhu J, Wang S, Xu D, Han W. Frontiers in Chemistry; 6(JUN):223.

Date published: January 1, 2018
Featured in this article: Dong Xu.

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2017

Tsetse fly (Glossina pallidipes) midgut responses to Trypanosoma brucei challenge. Bateta R, Wang J, Wu Y, Weiss BL, Warren WC, Murilla GA, Aksoy S, Mireji PO. Parasites and Vectors; 10(1):614.

Date published: December 19, 2017
Featured in this article: Wes Warren.

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MusiteDeep: A deep-learning framework for general and kinase-specific phosphorylation site prediction. Wang D, Zeng S, Xu C, Qiu W, Liang Y, Joshi T, Xu D. Bioinformatics; 33(24):3909-3916.

Date published: December 15, 2017
Featured in this article: Duolin Wang, Shuai Zeng, Chunhui Xu, Trupti Joshi, Dong Xu.

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Development of ‘KBCommons’ – Universal informatics framework for multi-omics translational research. Narisetti SRK, Zeng S, Lyu Z, Joshi T. Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017; 2017-January:2285-2286.

Date published: December 15, 2017
Featured in this article: Shuai Zeng, Zhen Lyu, Trupti Joshi.

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A multi-omics informatics approach for identifying molecular mechanisms and biomarkers in clinical patients with endometriosis. Akter S, Wilshire G, Davis JW, Bromfield J, Crowder S, Joshi T, Pelch K, Schust DJ, Meng A, Barrier B, Nagel SC. Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017; 2017-January:2221-2223.

Date published: December 15, 2017
Featured in this article: Trupti Joshi.

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Development of an informatics analytics workflow for DAP-seq data exploration and validation for auxin response factors in maize. Sen, S, Galli M, Gallavotti A, Joshi T. Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017; 2017-January:2300-2301.

Date published: December 15, 2017
Featured in this article: Sidharth Sen, Trupti Joshi.

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Leaf shedding as an anti-bacterial defense in Arabidopsis cauline leaves. Patharkar OR, Gassmann W, Walker JC. PLoS Genetics; 13(12):e1007132.

Date published: December 1, 2017
Featured in this article: Walter Gassmann.

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Optimization of a series of heterocycles as survival motor neuron gene transcription enhancers. Choi S, Calder AN, Miller EH, Anderson KP, Fiejtek DK, Rietz A, Li H, Cherry JJ, Quist KM, Xing X, Glicksman MA, Cuny GD, Lorson CL, Androphy EA, Hodgetts KJ. Bioorganic and Medicinal Chemistry Letters; 27(23):5144-5148.

Date published: December 1, 2017
Featured in this article: Christian Lorson.

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Phosphorylation of arabidopsis MAP kinase phosphatase 1 (MKP1) is required for PAMP responses and resistance against bacteria. Jiang L, Anderson JC, González Besteiro MA, Peck SC. Plant Physiology; 175(4):1839-1852.

Date published: December 1, 2017
Featured in this article: Scott Peck.

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The mitochondrial metallochaperone SCO1 maintains CTR1 at the plasma membrane to preserve copper homeostasis in the murine heart. Baker ZN, Jett K, Boulet A, Hossain A, Cobine PA, Kim B-E, El Zawily AM, Lee L, Tibbits GF, Petris MJ, Leary SC. Human Molecular Genetics; 26(23):4617-4628.

Date published: December 1, 2017
Featured in this article: Michael Petris.

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The asparagus genome sheds light on the origin and evolution of a young y chromosome. Harkess A, Zhou J, Xu C, Bowers JE, Van Der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y, Luo S, Chen H, Gao J, Mao Z, Pires JC, Luo M, Kudrna D, Wing RA, Meyers BC, Yi K, Kong H, Lavrijsen P, Sunseri F, Falavigna A, Ye Y, Leebens-Mack JH, Chen G. Nature Communications; 8(1):1279.

Date published: December 1, 2017
Featured in this article: J. Chris Pires.

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Genome-Guided Phylo-Transcriptomic Methods and the Nuclear Phylogentic Tree of the Paniceae Grasses. Washburn JD, Schnable JC, Conant GC, Brutnell TP, Shao Y, Zhang Y, Ludwig M, Davidse G, Pires JC. Scientific Reports; 7(1):13528.

Date published: December 1, 2017
Featured in this article: J. Chris Pires.

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Extracellular ATP elicits DORN1-mediated RBOHD phosphorylation to regulate stomatal aperture. Chen D, Cao Y, Li H, Kim D, Ahsan N, Thelen J, Stacey G. Nature Communications; 8(1):2265.

Date published: December 1, 2017
Featured in this article: Jay Thelen, Gary Stacey.

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Controlled modification of biomolecules by ultrashort laser pulses in polar liquids. Gruzdev V, Korkin D, Mooney BP, Havelund JF, Møller IM, Thelen JJ. Scientific Reports; 7(1):5550.

Date published: December 1, 2017
Featured in this article: Brian Mooney, Jay Thelen.

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The bacteroid periplasm in soybean nodules is an interkingdom symbiotic space. Strodtman KN, Stevenson SE, Waters JK, Mawhinney TP, Thelen JJ, Polacco JC, Emerich DW. Molecular Plant-Microbe Interactions; 30(12):997-1008.

Date published: December 1, 2017
Featured in this article: Jay Thelen.

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Genetic variation and gene expression across multiple tissues and developmental stages in a nonhuman primate. Jasinska AJ, Zelaya I, Service SK, Peterson CB, Cantor RM, Choi O-W, DeYoung J, Eskin E, Fairbanks LA, Fears S, Furterer AE, Huang YS, Ramensky V, Scmitt CA, Svardal H, Jorgensen MJ, Kaplan JR, Villar D, Aken BL, Flicek P, Nag R, Wong ES, Blangero J, Dyer TD, Bogomolov M, Benjamini Y, Weinstock GM, Dewar K, Sabatti C, Wilson RK, Jentsch DJ, Warren W, Coppola G, Woods RP, Freimer NB. Nature Genetics; 49(12):1714-1721.

Date published: December 1, 2017
Featured in this article: Wes Warren.

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Ancient hybridization and strong adaptation to viruses across African vervet monkey populations. Svardal H, Jasinska AJ, Apetrei C, Coppola G, Huang Y, Schmitt CA, Jacquelin B, Ramensky V, Müller-Trutwin M, Antonio M, Weinstock G, Grobler JP, Dewar K, Wilson RK, Turner TR, Warren WC, Freimer NB, Nordborg M. Nature Genetics; 49(12):1705-1713.

Date published: December 1, 2017
Featured in this article: Wes Warren.

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The Novel Evolution of the Sperm Whale Genome. Warren WC, Kuderna L, Alexander A, Catchen J, Pérez-Silva JG, López-Otín C, Quesada V, Minx P, Tomlinson C, Montague MJ, Farias FHG, Walter RB, Marques-Bonet T, Glenn T, Kieran TJ, Wise SS, Wise JP, Waterhouse RM. Genome Biology and Evolution; 9(12):3260-3264.

Date published: December 1, 2017
Featured in this article: Wes Warren.

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The genome and adult somatic transcriptome of the mormyrid electric fish paramormyrops kingsleyae. Gallant JR, Losilla M, Tomlinson C, Warren WC. Genome Biology and Evolution; 9(12):3525-3530.

Date published: December 1, 2017
Featured in this article: Wes Warren.

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Understanding the differences of the ligand binding/unbinding pathways between phosphorylated and non-phosphorylated ARH1 using molecular dynamics simulations. Zhu J, Lv Y, Han X, Xu D, Han W. Scientific Reports; 7(1):12439.

Date published: December 1, 2017
Featured in this article: Dong Xu.

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Arabidopsis TCP transcription factors interact with the SUMO conjugating machinery in nuclear foci. Mazur MJ, Spears BJ, Djajasaputra A, Van Der Gragt M, Vlachakis G, Beerens B, Gassmann W, Van Den Burg HA. Frontiers in Plant Science; 8:2043.

Date published: November 30, 2017
Featured in this article: Walter Gassmann.

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Molecular Dynamics Simulations of the [2Fe-2S] Cluster-Binding Domain of NEET Proteins Reveal Key Molecular Determinants That Induce Their Cluster Transfer/Release. Pesce L, Calandrini V, Marjault H-B, Lipper CH, Rossetti G, Mittler R, Jennings PA, Bauer A, Nechushtai R, Carloni P. Journal of Physical Chemistry B; 121(47):10648-10656.

Date published: November 30, 2017
Featured in this article: Ron Mittler.

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Activation of the lrr receptor-like kinase psy1r requires transphosphorylation of residues in the activation loop. Oehlenschlæger CB, Gersby LBA, Ahsan N, Pedersen JT, Kristensen A, Solakova TV, Thelen JJ, Fuglsang AT. Frontiers in Plant Science; 8:2005.

Date published: November 27, 2017
Featured in this article: Jay Thelen.

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Effects of evolutionary pressure on histone modifications. Khan SM, Conant G, Xu D. Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017; 2017-January:2267.

Date published: November 13, 2017
Featured in this article: Dong Xu.

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A multimodal deep architecture for large-scale protein ubiquitylation site prediction. He F, Bao L, Wang R, Li J, Xu D, Zhao X. Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017; 2017-January:108-113.

Date published: November 13, 2017
Featured in this article: Dong Xu.

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Protein loop modeling using deep generative adversarial network. Li Z, Nguyen SP, Xu D, Shang Y. Proceedings - International Conference on Tools with Artificial Intelligence, ICTAI; 2017-November:1085-1091.

Date published: November 6, 2017
Featured in this article: Dong Xu.

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A new deep neighbor residual network for protein secondary structure prediction. Fang C, Shang Y, Xu D. Proceedings - International Conference on Tools with Artificial Intelligence, ICTAI; 2017-November:66-71.

Date published: November 6, 2017
Featured in this article: Dong Xu.

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Laminin-111-derived peptide conjugated fibrin hydrogel restores salivary gland function. Nam K, Maruyama CL, Wang C-S, Trump BG, Lei P, Andreadis ST, Baker OJ. PLoS ONE; 12(11):e0187069.

Date published: November 1, 2017
Featured in this article: Kihoon Nam, Olga Baker.

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A 37-year-old Menkes disease patient—Residual ATP7A activity and early copper administration as key factors in beneficial treatment. Tümer Z, Petris M, Zhu S, Mercer J, Bukrinski J, Bilz S, Baerlocher K, Horn N, Møller LB. Clinical Genetics; 92(5):548-553.

Date published: November 1, 2017
Featured in this article: Michael Petris.

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Zoonotic risk, pathogenesis, and transmission of avian-origin H3N2 canine influenza virus. Sun H, Blackmon S, Yang G, Waters K, Li T, Tangwangvivat R, Xu Y, Shyu D, Wen F, Cooley J, Senter L, Lin X, Jarman R, Hanson L, Webby R, Wan X-F. Journal of Virology; 91(21):e00637-17.

Date published: November 1, 2017
Featured in this article: XiuFeng “Henry” Wan.

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The roles of plasticity and evolutionary change in shaping gene expression variation in natural populations of extremophile fish. Passow CN, Henpita C, Shaw JH, Quackenbush CR, Warren WC, Schartl M, Arias-Rodriguez L, Kelley JL, Tobler M. Molecular Ecology; 26(22):6384-6399.

Date published: November 1, 2017
Featured in this article: Wes Warren.

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A 3-way hybrid approach to generate a new high-quality chimpanzee reference genome (Pan tro 3.0). Kuderna LFK, Tomlinson C, Hillier LW, Tran A, Fiddes IT, Armstrong J, Laayouni H, Gordon D, Huddleston J, Perez RG, Povolotskaya I, Armero AS, Garrido JG, Ho D, Ribeca P, Alioto T, Green RE, Paten B, Navarro A, Betranpetit J, Herrero J, Eichler EE, Sharp AJ, Feuk L, Warren WC, Marques-Bonet T. GigaScience; 6(11):gix098.

Date published: November 1, 2017
Featured in this article: Wes Warren.

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Optimization of trans-splicing for Huntington’s disease RNA therapy. Rindt H, Tom CM, Lorson CL, Mattis VB. Frontiers in Neuroscience; 11(OCT):544.

Date published: October 10, 2017
Featured in this article: Christian Lorson.

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P2X7 receptor antagonism prevents IL-1 release from salivary epithelial cells and reduces inflammation in a mouse model of autoimmune exocrinopathy. Khalafalla MG, Woods LT, Camden JM, Khan AA, Limesand KH, Petris MJ, Erb L, Weisman GA. Journal of Biological Chemistry; 292(40):16626-16637.

Date published: October 6, 2017
Featured in this article: Lucas Woods, Jean Camden, Aslam Khan, Michael Petris, Gary Weisman.

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Luxurious nitrogen fertilization of two sugar cane genotypes contrasting for lignin composition causes changes in the stem proteome related to carbon, nitrogen, and oxidant metabolism but does not alter lignin content. Salvato F, Wilson R, Llerena JPP, Kiyota E, Reis KL, Boaretto LF, Balbuena TS, Azevedo RA, Thelen JJ, Mazzafera P. Journal of Proteome Research; 16(10):3688-3703.

Date published: October 6, 2017
Featured in this article: Jay Thelen.

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Gα and regulator of G-protein signaling (RGS) protein pairs maintain functional compatibility and conserved interaction interfaces throughout evolution despite frequent loss of RGS proteins in plants. Hackenberg D, McKain MR, Lee SG, Roy Choudhury S, McCann T, Schreier S, Harkess A, Pires JC, Wong GK-S, Jez JM, Kellogg EA, Pandey S. New Phytologist; 216(2):562-575.

Date published: October 1, 2017
Featured in this article: J. Chris Pires.

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A Fluorescent Split Aptamer for Visualizing RNA-RNA Assembly in Vivo. Alam KK, Tawiah KD, Lichte MF, Porciani D, Burke DH. ACS Synthetic Biology; 6(9):1710-1721.

Date published: September 15, 2017
Featured in this article: David Porciani, Donald Burke-Agüero.

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Toward the selection of cell targeting aptamers with extended biological functionalities to facilitate endosomal escape of cargoes. Tawiah KD, Porciani D, Burke DH. Biomedicines; 5(3):51.

Date published: September 1, 2017
Featured in this article: David Porciani, Donald Burke-Agüero.

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Astrocyte-produced miR-146a as a mediator of motor neuron loss in spinal muscular atrophy. Sison SL, Patitucci TN, Seminary ER, Villalon E, Lorson CL, Ebert AD. Human Molecular Genetics; 26(17):3409-3420.

Date published: September 1, 2017
Featured in this article: Christian Lorson.

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Host and pathogen copper-transporting P-type ATPases function antagonistically during Salmonella infection. Ladomersky E, Khan A, Shanbhag V, Cavet JS, Chan J, Weisman GA, Petris MJ. Infection and Immunity; 85(9):e00351-17.

Date published: September 1, 2017
Featured in this article: Aslam Khan, Vinit Shanbhag, Gary Weisman, Michael Petris.

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Subgenome dominance in an interspecific hybrid, synthetic allopolyploid, and a 140-year-old naturally established neo-allopolyploid monkeyflower. Edger PP, Smith R, McKain MR, Cooley AM, Vallejo-Marin M, Yuan Y, Bewick AJ, Ji L, Platts AE, Bowman MJ, Childs KL, Washburn JD, Schmitz RJ, Smith GD, Pires JC, Puzey JR. Plant Cell; 29(9):2150-2167.

Date published: September 1, 2017
Featured in this article: J. Chris Pires.

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A Resource of Genome-Wide Single Nucleotide Polymorphisms (Snps) for the Conservation and Management of Golden Eagles. Van Den Bussche RA, Judkins ME, Montague MJ, Warren WC. Journal of Raptor Research; 51(3):368-377.

Date published: September 1, 2017
Featured in this article: Wes Warren.

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Gene expression in Leishmania is regulated predominantly by gene dosage. Iantorno SA, Durrant C, Khan A, Sanders MJ, Beverley SM, Warren WC, Berriman M, Sacks DL, Cotton JA, Grigg ME. mBio; 8(5):e01393-17.

Date published: September 1, 2017
Featured in this article: Wes Warren.

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PzTAC and PzLAZY from a narrow-crown poplar contribute to regulation of branch angles. Xu D, Qi X, Li J, Han X, Wang J, Jiang Y, Tian Y, Wang Y. Plant Physiology and Biochemistry; 118:571.

Date published: September 1, 2017
Featured in this article: Dong Xu.

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Analysis of Azithromycin Monohydrate as a Single or a Combinatorial Therapy in a Mouse Model of Severe Spinal Muscular Atrophy. Osman EY, Washington CW, Simon ME, Megiddo D, Greif H, Lorson CL. Journal of Neuromuscular Diseases; 4(3):237-249.

Date published: August 29, 2017
Featured in this article: Christian Lorson.

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Molecular resources from transcriptomes in the brassicaceae family. Lopez L, Wolf EM, Pires JC, Edger PP, Koch MA. Frontiers in Plant Science; 8:1488.

Date published: August 29, 2017
Featured in this article: J. Chris Pires.

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Corrigendum: Whole genome analysis of a schistosomiasis-transmitting freshwater snail. Adema CM, Hillier LW, Jones CS, Loker ES, Knight M, Minx P, Oliveira G, Raghavan N, Shedlock A, Do Amaral LR, Arican-Goktas HD, Assis JG, Baba EH, Baron OL, Bayne CJ, Bickham-Wright U, Biggar KK, Blouin M, Bonning BC, Botka C, Bridger JM, Buckley KM, Buddenborg SK, Lima Caldeira R, Carleton J, Carvalho OS, Castillo MG, Chalmers IW, Christensens M, Clifton S, Cosseau C, Coustau C, Cripps RM, Cuesta-Astroz Y, Cummins SF, DI Stephano L, DInguirard N, Duval D, Emrich S, Feschotte C, Feyereisen R, Fitzgerald P, Fronick C, Fulton L, Galinier R, Gava SG, Geusz M, Geyer KK, Giraldo-Calderón GI, De Souza Gomes M, Gordy MA, Gourbal B, Grunau C, Hanington PC, Hoffmann KF, Hughes D, Humphries J, Jackson DJ, Jannotti-Passos LK, De Jesus Jeremias W, Jobling S, Kamel B, Kapusta A, Kaur S, Koene JM, Kohn AB, Lawson D, Lawton SP, Liang D, Limpanont Y, Liu S, Lockyer AE, Lovato TL, Ludolf F, Magrini V, McManus DP, Medina M, Misra M, Mitta G, Mkoji GM, Montague MJ, Montelongo C, Moroz LL, Munoz-Torres MC, Niazi U, Noble LR, Oliveira FS, Pais FS, Papenfuss AT, Peace R, Pena JJ, Pila EA, Quelais T, Raney BJ, Rast JP, Rollinson D, Rosse IC, Rotgans B, Routledge EJ, Ryan KM, Scholte LLS, Storey KB, Swain M, Tennessen JA, Tomlinson C, Trujillo DL, Volpi EV, Walker AJ, Wang T, Wannaporn I, Warren WC, Wu X-J, Yoshino TP, Yusuf M, Zhang S-M, Zhao M, Wilson RK. Nature Communications; 8:16153.

Date published: August 23, 2017
Featured in this article: Wes Warren.

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Genetic dissection of Arabidopsis MAP kinase phosphatase 1-dependent PAMP-induced transcriptional responses. Jiang L, Wan Y, Anderson JC, Hou J, Islam SM, Cheng J, Peck SC. Journal of Experimental Botany; 68(18):5207-5220.

Date published: August 15, 2017
Featured in this article: Scott Peck.

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Comparative proteomic analysis provides insight into the biological role of protein phosphatase inhibitor-2 from Arabidopsis. Ahsan N, Chen M, Salvato F, Wilson RS, Shyama Prasad Rao R, Thelen JJ. Journal of Proteomics; 165:51-60.

Date published: August 8, 2017
Featured in this article: Jay Thelen.

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The GmFWL1 (FW2-2-like) nodulation gene encodes a plasma membrane microdomain-associated protein. Qiao Z, Brechenmacher L, Smith B, Strout GW, Mangin W, Taylor C, Russell SD, Stacey G, Libault M. Plant Cell and Environment; 40(8):1442-1455.

Date published: August 1, 2017
Featured in this article: Gary Stacey.

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Molecular genetic analysis of the melanoma regulatory locus in Xiphophorus interspecies hybrids. Lu Y, Boswell M, Boswell W, Kneitz S, Hausmann M, Klotz B, Regneri J, Savage M, Amores A, Postlethwait J, Warren W, Schartl M, Walter R. Molecular Carcinogenesis; 56(8):1935-1944.

Date published: August 1, 2017
Featured in this article: Wes Warren.

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Complexities of gene expression patterns in natural populations of an extremophile fish (Poecilia mexicana, Poeciliidae). Passow CN, Brown AP, Arias-Rodriguez L, Yee M-C, Sockell A, Schartl M, Warren WC, Bustamante C, Kelley JL, Tobler M. Molecular Ecology; 26(16):4211-4225.

Date published: August 1, 2017
Featured in this article: Wes Warren.

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The practical use of genome sequencing data in the management of a feline colony pedigree. Farias FHG, Tomlinson C, Labuda J, Perez-Camargo G, Middleton R, Warren WC. BMC Veterinary Research; 13(1):225.

Date published: July 27, 2017
Featured in this article: Wes Warren.

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Anatolian origins and diversification of aethionema, the sister lineage of the core brassicaceae. Mohammadin S, Peterse K, van de Kerke SJ, Chatrou LW, Dönmez AA, Mummenhoff K, Pires JC, Edger PP, Al-Shehbaz IA, Schranz ME. American Journal of Botany; 104(7):1042-1054.

Date published: July 25, 2017
Featured in this article: J. Chris Pires.

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Sphingosine 1-phosphate lyase enhances the activation of IKK to promote type i IFN-mediated innate immune responses to influenza a virus infection. Vijayan M, Xia C, Song YE, Ngo H, Studstill CJ, Drews K, Fox TE, Johnson MC, Hiscott J, Kester M, Alexander S, Hahm B. Journal of Immunology; 199(2):677-687.

Date published: July 15, 2017
Featured in this article: Marc Johnson.

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Differential Effects of Prior Influenza Exposures on H3N2 Cross-reactivity of Human Postvaccination Sera. Xie H, Li L, Ye Z, Li X, Plant EP, Zoueva O, Zhao Y, Jing X, Lin Z, Kawano T, Chiang M-J, Finch CL, Kosikova M, Zhang A, Zhu Y, Wan X-F. Clinical Infectious Diseases; 65(2):259-267.

Date published: July 15, 2017
Featured in this article: XiuFeng “Henry” Wan.

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A role for the ATP7A copper transporter in tumorigenesis and cisplatin resistance. Zhu S, Shanbhag V, Wang Y, Lee J, Petris M. Journal of Cancer; 8(11):1952-1958.

Date published: July 5, 2017
Featured in this article: Vinit Shanbhag, Michael Petris.

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Regulation of inflammation by lipid mediators in oral diseases. Sommakia S, Baker OJ. Oral Diseases; 23(5):576-597.

Date published: July 1, 2017
Featured in this article: Olga Baker.

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L1 Peptide-Conjugated Fibrin Hydrogels Promote Salivary Gland Regeneration. Nam K, Wang C-S, Maruyama CLM, Lei P, Andreadis ST, Baker OJ. Journal of Dental Research; 96(7):798-806.

Date published: July 1, 2017
Featured in this article: Kihoon Nam, Olga Baker.

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Foundational and translational research opportunities to improve plant health. Michelmore R, Coaker G, Bart R, Beattie G, Bent A, Bruce T, Cameron D, Dangl J, Dinesh-Kumar S, Edwards R, Eves-Van Den Akker S, Gassmann W, Greenberg JT, Hanley-Bowdoin L, Harrison RJ, He P, Harvey J, Huffaker A, Hulbert S, Innes R, Jones JDG, Kaloshian I, Kamoun S, Katagiri F, Leach J, Ma W, McDowell J, Medford J, Meyers B, Nelson R, Oliver R, Qi Y, Saunders D, Shaw M, Smart C, Subudhi P, Torrance L, Tyler B, Valent B, Walsh J. Molecular Plant-Microbe Interactions; 30(7):515-516.

Date published: July 1, 2017
Featured in this article: Walter Gassmann.

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Genomic inferences of domestication events are corroborated by written records in Brassica rapa. Qi X, An H, Ragsdale AP, Hall TE, Gutenkunst RN, Chris Pires J, Barker MS. Molecular Ecology; 26(13):3373-3388.

Date published: July 1, 2017
Featured in this article: Hong An, J. Chris Pires.

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Laser-ablation electrospray ionization mass spectrometry with ion mobility separation reveals metabolites in the symbiotic interactions of soybean roots and rhizobia. Stopka SA, Agtuca BJ, Koppenaal DW, Paša-Tolić L, Stacey G, Vertes A, Anderton CR. Plant Journal; 91(2):340-354.

Date published: July 1, 2017
Featured in this article: Gary Stacey.

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Medicago truncatula Oleanolic-Derived Saponins Are Correlated with Caterpillar Deterrence. Cai F, Watson BS, Meek D, Huhman DV, Wherritt DJ, Ben C, Gentzbittel L, Driscoll BT, Sumner LW, Bede JC. Journal of Chemical Ecology; 43(7):712-724.

Date published: July 1, 2017
Featured in this article: Lloyd Sumner.

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BioJava-ModFinder: Identification of protein modifications in 3D structures from the Protein Data Bank. Gao J, Prlić A, Bi C, Bluhm WF, Dlmitropoulos D, Xu D, Bourne PE, Rose PW. Bioinformatics; 33(13):2047-2049.

Date published: July 1, 2017
Featured in this article: Dong Xu.

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Overfitting reduction of text classification based on AdaBELM. Feng X, Liang Y, Shi X, Xu D, Wang X, Guan R. Entropy; 19(7):330.

Date published: July 1, 2017
Featured in this article: Dong Xu.

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Diurnal cycling of rhizosphere bacterial communities is associated with shifts in carbon metabolism. Staley C, Ferrieri AP, Tfaily MM, Cui Y, Chu RK, Wang P, Shaw JB, Ansong CK, Brewer H, Norbeck AD, Markillie M, do Amaral F, Tuleski T, Pellizzaro T, Agtuca B, Ferrieri R, Tringe SG, Paša-Tolić L, Stacey G, Sadowsky MJ. Microbiome; 5(1):65.

Date published: June 24, 2017
Featured in this article: Yaya Cui, Gary Stacey.

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Corrigendum: A proteinaceous organic matrix regulates carbonate mineral production in the marine teleost intestine. Schauer KL, Lemoine CMR, Pelin A, Corradi N, Warren WC, Grosell M. Scientific Reports; 7:46844.

Date published: June 19, 2017
Featured in this article: Wes Warren.

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Discovery of a Small Molecule Probe That Post-Translationally Stabilizes the Survival Motor Neuron Protein for the Treatment of Spinal Muscular Atrophy. Rietz A, Li H, Quist KM, Cherry JJ, Lorson CL, Burnett BG, Kern NL, Calder AN, Fritsche M, Lusic H, Boaler PJ, Choi S, Xing X, Glicksman MA, Cuny GD, Androphy EJ, Hodgetts KJ. Journal of Medicinal Chemistry; 60(11):4594-4610.

Date published: June 8, 2017
Featured in this article: Christian Lorson.

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RNA-protein interactions govern antiviral specificity and encapsidation of broad spectrum anti-HIV reverse transcriptase aptamers. Lange MJ, Nguyen PDM, Callaway MK, Johnson MC, Burke DH. Nucleic Acids Research; 45(10):6087-6097.

Date published: June 2, 2017
Featured in this article: Margaret Lange, Marc Johnson, Donald Burke-Agüero.

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Reactive oxygen species, abiotic stress and stress combination. Choudhury FK, Rivero RM, Blumwald E, Mittler R. Plant Journal; 90(5):856-867.

Date published: June 1, 2017
Featured in this article: Ron Mittler.

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Insights into the evolution of hydroxyproline-rich glycoproteins from 1000 plant transcriptomes. Johnson KL, Cassin AM, Lonsdale A, Wong GK-S, Soltis DE, Miles NW, Melkonian M, Melkonian B, Deyholos MK, Leebens-Mack J, Rothfels CJ, Stevenson DW, Graham SW, Wang X, Wu S, Pires JC, Edger PP, Carpenter EJ, Bacic A, Doblin MS, Schultz CJ. Plant Physiology; 174(2):904-921.

Date published: June 1, 2017
Featured in this article: J. Chris Pires.

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3-hydroxypyrimidine-2,4-diones as novel hepatitis b virus antivirals targeting the viral ribonuclease H. Huber AD, Michailidis E, Tang J, Puray-Chavez MN, Boftsi M, Wolf JJ, Boschert KN, Sheridan MA, Leslie MD, Kirby KA, Singh K, Mitsuya H, Parniak MA, Wang Z, Sarafianos SG. Antimicrobial Agents and Chemotherapy; 61(6):e00245-17.

Date published: June 1, 2017
Featured in this article: Kamlendra Singh.

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The oil-contaminated soil diazotroph Azoarcus olearius DQS-4ᵀ is genetically and phenotypically similar to the model grass endophyte Azoarcus sp. BH72. Faoro H, Rene Menegazzo R, Battistoni F, Gyaneshwar, do Amaral FP, Taulé C, Rausch S, Gonçalves Galvão P, de los Santos C, Mitra S, Heijo G, Sheu S-Y, Chen W-M, Marwque C, Zibetti Tadra-Sfeir M, Ivo Baldani J, Maluk M, Paula Guimarães A, Stacey G, de Souza EM, Pedrosa FO, Magalhães Cruz L, James EK. Environmental Microbiology Reports; 9(3):223-238.

Date published: June 1, 2017
Featured in this article: Gary Stacey.

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Arabidopsis E3 ubiquitin ligase PLANT U-BOX13 (PUB13) regulates chitin receptor LYSIN MOTIF RECEPTOR KINASE5 (LYK5) protein abundance. Liao D, Cao Y, Sun X, Espinoza C, Nguyen CT, Liang Y, Stacey G. New Phytologist; 214(4):1646-1656.

Date published: June 1, 2017
Featured in this article: Gary Stacey.

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Genetic dissection of the maize (Zea mays L.) MAMP response. Zhang X, Valdés-López O, Arellano, Stacey G, Balint-Kurti P. Theoretical and Applied Genetics; 130(6):1155-1168.

Date published: June 1, 2017
Featured in this article: Gary Stacey.

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The Cyprinodon variegatus genome reveals gene expression changes underlying differences in skull morphology among closely related species. Lencer ES, Warren WC, Harrison R, McCune AR. BMC Genomics; 18(1):424.

Date published: May 30, 2017
Featured in this article: Wes Warren.

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Whole genome analysis of a schistosomiasis-transmitting freshwater snail. Adema CM, Hillier LW, Jones CS, Loker ES, Knight M, Minx P, Oliveira G, Raghavan N, Shedlock A, Do Amaral LR, Arican-Goktas HD, Assis JG, Baba EH, Baron OL, Bayne CJ, Bickham-Wright U, Biggar KK, Blouin M, Bonning BC, Botka C, Bridger JM, Buckley KM, Buddenborg SK, Lima Caldeira R, Carleton J, Carvalho OS, Castillo MG, Chalmers IW, Christensens M, Clifton S, Cosseau C, Coustau C, Cripps RM, Cuesta-Astroz Y, Cummins SF, DI Stephano L, DInguirard N, Duval D, Emrich S, Feschotte C, Feyereisen R, Fitzgerald P, Fronick C, Fulton L, Galinier R, Gava SG, Geusz M, Geyer KK, Giraldo-Calderón GI, De Souza Gomes M, Gordy MA, Gourbal B, Grunau C, Hanington PC, Hoffmann KF, Hughes D, Humphries J, Jackson DJ, Jannotti-Passos LK, De Jesus Jeremias W, Jobling S, Kamel B, Kapusta A, Kaur S, Koene JM, Kohn AB, Lawson D, Lawton SP, Liang D, Limpanont Y, Liu S, Lockyer AE, Lovato TL, Ludolf F, Magrini V, McManus DP, Medina M, Misra M, Mitta G, Mkoji GM, Montague MJ, Montelongo C, Moroz LL, Munoz-Torres MC, Niazi U, Noble LR, Oliveira FS, Pais FS, Papenfuss AT, Peace R, Pena JJ, Pila EA, Quelais T, Raney BJ, Rast JP, Rollinson D, Rosse IC, Rotgans B, Routledge EJ, Ryan KM, Scholte LLS, Storey KB, Swain M, Tennessen JA, Tomlinson C, Trujillo DL, Volpi EV, Walker AJ, Wang T, Wannaporn I, Warren WC, Wu X-J, Yoshino TP, Yusuf M, Zhang S-M, Zhao M, Wilson RK. Nature Communications; 8:15451.

Date published: May 16, 2017
Featured in this article: Wes Warren.

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Quantitative proteomics analysis of leaves from two Sedum alfredii (Crassulaceae) populations that differ in cadmium accumulation. Zhang Z, Zhou H, Yu Q, Li Y, Mendoza-Cózatl DG, Qiu B, Liu P, Chen Q. Proteomics; 17(10):1600456.

Date published: May 1, 2017
Featured in this article: David Mendoza-Cózatl.

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Orchestrating rapid long-distance signaling in plants with Ca2+, ROS and electrical signals. Choi W-G, Miller G, Wallace I, Harper J, Mittler R, Gilroy S. Plant Journal; 90(4):698-707.

Date published: May 1, 2017
Featured in this article: Ron Mittler.

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Water-deficit-induced changes in transcription factor expression in maize seedlings. Seeve CM, Cho I-J, Hearne LB, Srivastava GP, Joshi T, Smith DO, Sharp RE, Oliver MJ. Plant Cell and Environment; 40(5):686-701.

Date published: May 1, 2017
Featured in this article: Trupti Joshi.

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Molecular and functional bases of selection against a mutation bias in an RNA virus. De La Higuera I, Ferrer-Octa C, De Ávila AI, Perales C, Sierra M, Singh K, Sarafianos SG, Dehouck Y, Bastolla U, Verdaguer N, Domingo E. Genome Biology and Evolution; 9(5):1212-1228.

Date published: May 1, 2017
Featured in this article: Kamlendra Singh.

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Low-pathogenic influenza A viruses in North American diving ducks contribute to the emergence of a novel highly pathogenic influenza A(H7N8) virus. Xu Y, Ramey AM, Bowman AS, DeLiberto TJ, Killian ML, Krauss S, Nolting JM, Torchetti MK, Reeves AB, Webby RJ, Stallknecht DE, Wan X-F. Journal of Virology; 91(9):e02208-16.

Date published: May 1, 2017
Featured in this article: XiuFeng “Henry” Wan.

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Discovery and genotyping of structural variation from long-read haploid genome sequence data. Huddleston J, Chaisson MJP, Steinberg KM, Warren W, Hoekzema K, Gordon D, Graves-Lindsay TA, Munson KM, Kronenberg ZN, Vives L, Peluso P, Boitano M, Chin C-S, Korlach J, Wilson RK, Eichler EE. Genome Research; 27(5):677-685.

Date published: May 1, 2017
Featured in this article: Wes Warren.

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iPhos-PseEvo: Identifying Human Phosphorylated Proteins by Incorporating Evolutionary Information into General PseAAC via Grey System Theory. Qiu W-R, Sun B-Q, Xiao X, Xu D, Chou K-C. Molecular Informatics; 36(5):1600010.

Date published: May 1, 2017
Featured in this article: Dong Xu.

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The Role of Plant Innate Immunity in the Legume-Rhizobium Symbiosis. Cao Y, Halane MK, Gassmann W, Stacey G. Annual Review of Plant Biology; 68:535-561.

Date published: April 28, 2017
Featured in this article: Walter Gassmann, Gary Stacey.

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Understanding the Phosphorylation Mechanism by Using Quantum Chemical Calculations and Molecular Dynamics Simulations. Han W, Zhu J, Wang S, Xu D. Journal of Physical Chemistry B; 121(15):3565-3573.

Date published: April 20, 2017
Featured in this article: Dong Xu.

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Pathogenicity and transmission of a swine influenza A(H6N6) virus. Sun H, Kaplan BS, Guan M, Zhang G, Ye J, Long L-P, Blackmon S, Yang C-K, Chiang M-J, Xie H, Zhao N, Cooley J, Smith DF, Liao M, Cardona C, Li L, Wang GP, Webby R, Wan X-F. Emerging Microbes and Infections; 6(4):e17.

Date published: April 12, 2017
Featured in this article: Minhui Guan, Liping Long, XiuFeng “Henry” Wan.

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Interactions between mito NEET and NAF-1 in cells. Karmi O, Holt SH, Song L, Tamir S, Luo Y, Bai F, Adenwalla A, Darash-Yahana M, Sohn Y-S, Jennings PA, Azad RK, Onuchic JN, Morcos F, Nechushtai R, Mittler R. PLoS ONE; 12(4):e0175796.

Date published: April 1, 2017
Featured in this article: Ron Mittler.

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Divergent cytosine DNA methylation patterns in single-cell, soybean root hairs. Hossain MS, Kawakatsu T, Kim KD, Zhang N, Nguyen CT, Khan SM, Batek JM, Joshi T, Schmutz J, Grimwood J, Schmitz RJ, Xu D, Jackson SA, Ecker JR, Stacey G. New Phytologist; 214(2):808-819.

Date published: April 1, 2017
Featured in this article: Trupti Joshi, Dong Xu, Gary Stacey.

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Detection of antigenic variants of subtype H3 swine influenza A viruses from clinical samples. Martin BE, Bowman AS, Li L, Nolting JM, Smith DR, Hanson LA, Wan X-F. Journal of Clinical Microbiology; 55(4):1037-1045.

Date published: April 1, 2017
Featured in this article: XiuFeng “Henry” Wan.

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AT-RvD1 Promotes Resolution of Inflammation in NOD/ShiLtJ mice. Wang C-S, Maruyama CL, Easley JT, Trump BG, Baker OJ. Scientific Reports; 7:45525.

Date published: March 31, 2017
Featured in this article: Olga Baker.

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The interactome of the copper transporter ATP7A belongs to a network of neurodevelopmental and neurodegeneration factors. Comstra HS, McArthy J, Rudin-Rush S, Hartwig C, Gokhale A, Zlatic SA, Blackburn JB, Werner E, Petris M, D’Souza P, Panuwet P, Barr DB, Lupashin V, Vrailas-Mortimer A, Faundez V. eLife; 6:e24722.

Date published: March 29, 2017
Featured in this article: Michael Petris.

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Early-Onset Progressive Retinal Atrophy Associated with an IQCB1 Variant in African Black-Footed Cats (Felis nigripes). Oh A, Pearce JW, Gandolfi B, Creighton EK, Suedmeyer WK, Selig M, Bosiack AP, Castaner LJ, Whiting REH, Belknap EB, Lyons LA, Aderdein D, Alves PC, Barsh GS, Beale HC, Boyko AR, Castelhano MG, Chan P, Ellinwood NM, Garrick DJ, Helps CR, Kaelin CB, Leeb T, Lohi H, Longeri M, Malik R, Montague MJ, Munday JS, Murphy WJ, Pedersen NC, Rothschild MF, Swanson WF, Terio KA, Todhunter RJ, Warren WC. Scientific Reports; 7:43918.

Date published: March 21, 2017
Featured in this article: Wes Warren.

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Selective Inactivation of Functional RNAs by Ribozyme-Catalyzed Covalent Modification. Poudyal RR, Benslimane M, Lokugamage MP, Callaway MK, Staller S, Burke DH. ACS Synthetic Biology; 6(3):528-534.

Date published: March 17, 2017
Featured in this article: Donald Burke-Agüero.

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Population structure and phylogenetic relationships in a diverse panel of Brassica rapa L. Bird KA, An H, Gazave E, Gore MA, Pires JC, Robertson LD, Labate JA. Frontiers in Plant Science; 8:321.

Date published: March 13, 2017
Featured in this article: Hong An, J. Chris Pires.

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Small molecule inhibitors block Gas6-inducible TAM activation and tumorigenicity. Kimani SG, Kumar S, Bansal N, Singh K, Kholodovych V, Comollo T, Peng Y, Kotenko SV, Sarafianos SG, Bertino JR, Welsh WJ, Birge RB. Scientific Reports; 7:43908.

Date published: March 8, 2017
Featured in this article: Kamlendra Singh.

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Three-dimensional cultures of mouse submandibular and parotid glands: a comparative study. Leigh, N.J.a, Nelson, J.W.a, Mellas, R.E.a, McCall, A.D.b, Baker, O.J. Journal of Tissue Engineering and Regenerative Medicine; 11(3):618-626.

Date published: March 1, 2017
Featured in this article: Olga Baker.

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Methods for observing and quantifying muscle satellite cell motility and invasion in vitro. Lund DK, McAnulty P, Siegel AL, Cornelison D. Methods in Molecular Biology; 1556:303-315.

Date published: March 1, 2017
Featured in this article: D Cornelison.

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Muscle stem cells: A model system for adult stem cell biology. Cornelison DDW, Perdiguero E. Methods in Molecular Biology; 1556:3-19.

Date published: March 1, 2017
Featured in this article: D Cornelison.

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Comparison of independent screens on differentially vulnerable motor neurons reveals alpha-synuclein as a common modifier in motor neuron diseases. Kline RA, Kaifer KA, Osman EY, Carella F, Tiberi A, Ross J, Pennetta G, Lorson CL, Murray LM. PLoS Genetics; 13(3):e1006680.

Date published: March 1, 2017
Featured in this article: Christian Lorson.

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SMN deficiency negatively impacts red pulp macrophages and spleen development in mouse models of spinal muscular atrophy. Khairallah M-T, Astroski J, Custer SK, Androphy EJ, Franklin CL, Lorson CL. Human Molecular Genetics; 26(5):932-941.

Date published: March 1, 2017
Featured in this article: Christian Lorson.

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Chitin receptor CERK1 links salt stress and chitin-triggered innate immunity in Arabidopsis. Espinoza C, Liang Y, Stacey G. Plant Journal; 89(5):984-995.

Date published: March 1, 2017
Featured in this article: Gary Stacey.

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Fluorescence In Situ Hybridization for Glycine max Metaphase Chromosomes. Findley SD, Birchler JA, Stacey G. Current protocols in plant biology; 2(1):89-107.

Date published: March 1, 2017
Featured in this article: Gary Stacey.

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Metaphase Chromosome Preparation from Soybean (Glycine max) Root Tips. Findley SD, Birchler JA, Stacey G. Current protocols in plant biology; 2(1):78-88.

Date published: March 1, 2017
Featured in this article: Gary Stacey.

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The proteome of higher plant mitochondria. Rao RSP, Salvato F, Thal B, Eubel H, Thelen JJ, Møller IM. Mitochondrion; 33:22-37.

Date published: March 1, 2017
Featured in this article: Jay Thelen.

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Editorial. Møller IM, Thelen JJ. Mitochondrion; 33:1.

Date published: March 1, 2017
Featured in this article: Jay Thelen.

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Avian W and mammalian y chromosomes convergently retained dosage-sensitive regulators. Bellott DW, Skaletsky H, Cho T-J, Brown L, Locke D, Chen N, Galkina S, Pyntikova T, Koutseva N, Graves T, Kremitzki C, Warren WC, Clark AG, Gaginskaya E, Wilson RK, Page DC. Nature Genetics; 49(3):387-394.

Date published: March 1, 2017
Featured in this article: Wes Warren.

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Building and Improving Reference Genome Assemblies: This paper reviews the problems and algorithms of assembling a complete genome from millions of short DNA sequencing reads. Meltz Steinberg K, Schneider VA, Alkan C, Montague MJ, Warren WC, Church DM, Wilson RK. Proceedings of the IEEE; 105(3):422-435.

Date published: March 1, 2017
Featured in this article: Wes Warren.

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Precision Medicine in Cats: Novel Niemann-Pick Type C1 Diagnosed by Whole-Genome Sequencing. Mauler DA, Gandolfi B, Reinero CR, O'Brien DP, Spooner JL, Lyons LA, Aberdein D, Alves PC, Barsh GS, Beale HC, Boyko AR, Brockman JA, Castelhano MG, Chan PP, Matthew Ellinwood N, Fogle JE, Garrick DJ, Helps CR, Hytönen MK, Kaukonen M, Kaelin CB, Leclerc E, Leeb T, Lohi H, Longeri M, Malik R, Montague MJ, Munday JS, Murphy WJ, Pedersen NC, Rothschild MF, Stern JA, Swanson WF, Terio KA, Todhunter RJ, Ueda Y, Warren WC, Wilcox EA, Wildschutte JH. Journal of Veterinary Internal Medicine; 31(2):539-544.

Date published: March 1, 2017
Featured in this article: Wes Warren.

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The landscape of extreme genomic variation in the highly adaptable Atlantic killifish. Reid NM, Jackson CE, Gilbert D, Minx P, Montague MJ, Hampton TH, Helfrich LW, King BL, Nacci DE, Aluru N, Karchner SI, Colbourne JK, Hahn ME, Shaw JR, Oleksiak MF, Crawford DL, Warren WC, Whitehead A. Genome Biology and Evolution; 9(3):659-676.

Date published: March 1, 2017
Featured in this article: Wes Warren.

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OMPcontact: An Outer Membrane Protein Inter-Barrel Residue Contact Prediction Method. Zhang L, Wang H, Yan L, Su L, Xu D. Journal of Computational Biology; 24(3):217-228.

Date published: March 1, 2017
Featured in this article: Dong Xu.

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Current cell models for bioengineering salivary glands. Baker, OJ. Salivary Gland Development and Regeneration: Advances in Research and Clinical Approaches to Functional Restoration; 133-144.

Date published: February 20, 2017
Featured in this article: Olga Baker.

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Nucleobase modification by an RNA enzyme. Poudyal RR, Nguyen PDM, Lokugamage MP, Callaway MK, Gavette JV, Krishnamurthy R, Burke DH. Nucleic Acids Research; 45(3):1345-1354.

Date published: February 17, 2017
Featured in this article: Donald Burke-Agüero.

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Phylogenetic analysis of eukaryotic NEET proteins uncovers a link between a key gene duplication event and the evolution of vertebrates. Inupakutika MA, Sengupta S, Nechushtai R, Jennings PA, Onuchic JN, Azad RK, Padilla P, Mittler R. Scientific Reports; 7:42571.

Date published: February 16, 2017
Featured in this article: Ron Mittler.

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HA triggers the switch from MEK1 SUMOylation to phosphorylation of the ERK pathway in influenza A virus-infected cells and facilitates its infection. Wang C, Liu H, Luo J, Chen L, Li M, Su W, Zhao N, Liu S, Xie L, Jia Y, Ding H, Wan X, He H. Frontiers in Cellular and Infection Microbiology; 7(FEB):27.

Date published: February 7, 2017
Featured in this article: XiuFeng “Henry” Wan.

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BFDCA: A Comprehensive Tool of Using Bayes Factor for Differential Co-Expression Analysis. Wang D, Wang J, Jiang Y, Liang Y, Xu D. Journal of Molecular Biology; 429(3):446-453.

Date published: February 3, 2017
Featured in this article: Dong Xu.

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Muscle spindle alterations precede onset of sensorimotor deficits in Charcot–Marie–Tooth type 2E. Villalón E, Jones MR, Sibigtroth C, Zino SJ, Dale JM, Landayan DS, Shen H, Cornelison DDW, Garcia ML. Genes, Brain and Behavior; 16(2):260-270.

Date published: February 1, 2017
Featured in this article: Hai Lian Shen, D Cornelison.

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Evidence for the involvement of electrical, calcium and ROS signaling in the systemic regulation of non-photochemical quenching and photosynthesis. Białasek M, Górecka M, Mittler R, Karpiński S. Plant and Cell Physiology; 58(2):207-215.

Date published: February 1, 2017
Featured in this article: Ron Mittler.

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A FAS-ligand variant associated with autoimmune lymphoproliferative syndrome in cats. Aberdein D, Munday JS, Gandolfi B, Dittmer KE, Malik R, Garrick DJ, Lyons LA, 99 Lives Consortium, Alves PC, Barsh GS, Beale HC, Boyko AR, Castelhano MG, Chan P, Ellinwood NM, Helps CR, Kaelin CB, Leeb T, Lohi H, Longeri M, Montague MJ, Murphy WJ, Pedersen NC, Rothschild MF, Swanson WF, Terio KA, Todhunter RJ, Warren WC. Mammalian Genome; 28(1-2):47-55.

Date published: February 1, 2017
Featured in this article: Wes Warren.

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P2Y₂ receptor modulates shear stress-induced cell alignment and actin stress fibers in human umbilical vein endothelial cells. Sathanoori R, Bryl-Gorecka P, Müller CE, Erb L, Weisman GA, Olde B, Erlinge D. Cellular and Molecular Life Sciences; 74(4):731-746.

Date published: February 1, 2017
Featured in this article: Gary Weisman.

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Simplified enrichment of plasma membrane proteins from Arabidopsis thaliana seedlings using differential centrifugation and Brij-58 treatment. Collins CA, Leslie ME, Peck SC, Heese A. Methods in Molecular Biology; 1564:155-168.

Date published: January 26, 2017
Featured in this article: Scott Peck.

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Gene Therapy for Spinal Muscular Atrophy. Miller MR, Osman EY, Lorson CL. Molecular and Cellular Therapies for Motor Neuron Diseases; 233-250.

Date published: January 19, 2017
Featured in this article: Christian Lorson.

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End-to-end security formalization and alignment for federated workflow management. Dickinson M, Debroy S, Calyam P, Valluripally S, Zhang Y, Joshi T, Xu D. IEEE International Conference on Cloud Computing, CLOUD; 59-67.

Date published: January 17, 2017
Featured in this article: Trupti Joshi, Dong Xu.

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Serological evidence for high prevalence of Influenza D Viruses in Cattle, Nebraska, United States, 2003–2004. Luo J, Ferguson L, Smith DR, Woolums AR, Epperson WB, Wan X-F. Virology; 501:88-91.

Date published: January 15, 2017
Featured in this article: XiuFeng “Henry” Wan.

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Physiological Mg2+ conditions significantly alter the inhibition of HIV-1 and HIV-2 Reverse transcriptases by nucleoside and non-nucleoside inhibitors in vitro. Achuthan V, Singh K, Destefano JJ. Biochemistry; 56(1):33-46.

Date published: January 10, 2017
Featured in this article: Kamlendra Singh.

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Structure of the human monomeric NEET protein MiNT and its role in regulating iron and reactive oxygen species in cancer cells. Lipper CH, Karmi O, Sohn YS, Darash-Yahana M, Lammert H, Song L, Liu A, Mittler R, Nechushtai R, Onuchic JN, Jennings PA. Proceedings of the National Academy of Sciences of the United States of America; 115(2):272-277.

Date published: January 9, 2017
Featured in this article: Ron Mittler.

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Network-guided GWAS improves identification of genes affecting free amino acids. Angelovici R, Batushansky A, Deason N, Gonzalez-Jorge S, Gore MA, Fait A, Dellapenna D. Plant Physiology; 173(1):872-886.

Date published: January 1, 2017
Featured in this article: Ruthie Angelovici.

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Contributions of Different Cell Types to Spinal Muscular Atrophy Pathogenesis. Deguise MO, Patitucci TN, Ebert AD, Lorson CL, Kothary R. Spinal Muscular Atrophy: Disease Mechanisms and Therapy; 167-181.

Date published: January 1, 2017
Featured in this article: Christian Lorson.

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Moderate to severe water limitation differentially affects the phenome and ionome of Arabidopsis. Acosta-Gamboa LM, Liu S, Langley E, Campbell Z, Castro-Guerrero N, Mendoza-Cozatl D, Lorence A. Functional Plant Biology; 44(1):94-106.

Date published: January 1, 2017
Featured in this article: Norma Castro-Guerrero, David Mendoza-Cózatl.

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ROS Are Good. Mittler R. Trends in Plant Science; 22(1):11-19.

Date published: January 1, 2017
Featured in this article: Ron Mittler.

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The evolution of soybean knowledge base (SoyKB). Joshi T, Wang J, Zhang H, Chen S, Zeng S, Xu B, Xu D. Methods in Molecular Biology; 1533:149-159.

Date published: January 1, 2017
Featured in this article: Trupti Joshi, Dong Xu.

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Increased replication capacity following evolution of PYxE insertion in Gag-p6 is associated with enhanced virulence in HIV-1 subtype C from East Africa. Aralaguppe SG, Winner D, Singh K, Sarafianos SG, Quiñones-Mateu ME, Sönnerborg A, Neogi U. Journal of Medical Virology; 89(1):106-111.

Date published: January 1, 2017
Featured in this article: Kamlendra Singh.

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A 2-hydroxyisoquinoline-1,3-dione active-site RNase H inhibitor binds in multiple modes to HIV-1 reverse transcriptase. Kirby KA, Myshakina NA, Christen MT, Chen Y-L, Schmidt HA, Huber AD, Xi Z, Kim S, Rao RK, Kramer ST, Yang Q, Singh K, Parniak MA, Wang Z, Ishima R, Sarafianos SG. Antimicrobial Agents and Chemotherapy; 61(10).

Date published: January 1, 2017
Featured in this article: Kamlendra Singh.

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Molecular mechanism of plant recognition of extracellular ATP. Cho S-H, Nguyen CT, Choi J, Stacey G. Advances in Experimental Medicine and Biology; 1051:233-253.

Date published: January 1, 2017
Featured in this article: Gary Stacey.

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Two SERK receptor-like kinases interact with EMS1 to control anther cell fate determination. Li Z, Wang Y, Huang J, Ahsan N, Biener G, Paprocki J, Thelen JJ, Raicu V, Zhao D. Plant Physiology; 173(1):326-337.

Date published: January 1, 2017
Featured in this article: Jay Thelen.

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Feral swine in the United States have been exposed to both avian and swine influenza A viruses. Martin BE, Sun H, Carrel M, Cunningham FL, Baroch JA, Hanson-Dorr KC, Young SG, Schmit B, Nolting JM, Yoon K-J, Lutman MW, Pedersen K, Lager K, Bowman AS, Slemons RD, Smith DR, DeLiberto T, Wan X-F. Applied and Environmental Microbiology; 83(19):e01346-17.

Date published: January 1, 2017
Featured in this article: XiuFeng “Henry” Wan.

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Decoding glycan protein interactions by a new class of asymmetric N-glycans. Wu Z, Liu Y, Li L, Wan X-F, Zhu H, Guo Y, Wei M, Guan W, Wang PG. Organic and Biomolecular Chemistry; 15(42):8946-8951.

Date published: January 1, 2017
Featured in this article: XiuFeng “Henry” Wan.

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A new chicken genome assembly provides insight into avian genome structure. Warren WC, Hillier LW, Tomlinson C, Minx P, Kremitzki M, Graves T, Markovic C, Bouk N, Pruitt KD, Thibaud-Nissen F, Schneider V, Mansour TA, Brown CT, Zimin A, Hawken R, Abrahamsen M, Pyrkosz AB, Morisson M, Fillon V, Vignal A, Chow W, Howe K, Fulton JE, Miller MM, Lovell P, Mello CV, Wirthlin M, Mason AS, Kuo R, Burt DW, Dodgson JB, Cheng HH. G3: Genes, Genomes, Genetics; 7(1):109-117.

Date published: January 1, 2017
Featured in this article: Wes Warren.

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Bioinformatics analysis of protein phosphorylation in plant systems biology using P3DB. Yao Q, Xu D. Methods in Molecular Biology; 1558:127-138.

Date published: January 1, 2017
Featured in this article: Dong Xu.

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Tongue Images Classification Based on Constrained High Dispersal Network. Meng D, Cao G, Duan Y, Zhu M, Tu L, Xu D, Xu J. Evidence-based Complementary and Alternative Medicine; 2017:7452427.

Date published: January 1, 2017
Featured in this article: Dong Xu.

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Tongue image analysis and its mobile app development for health diagnosis. Kanawong R, Obafemi-Ajayi T, Liu D, Zhang M, Xu D, Duan Y. Advances in Experimental Medicine and Biology; 1005:99-121.

Date published: January 1, 2017
Featured in this article: Dong Xu.

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Gene Editing With TALEN and CRISPR/Cas in Rice. Bi H, Yang B. Progress in Molecular Biology and Translational Science; 149:81-98.

Date published: January 1, 2017
Featured in this article: Bing Yang.

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2016

Malonylation of glucosylated N-lauroylethanolamine: A new pathway that determines N-acylethanolamine metabolic fate in plants. Khan BR, Wherritt DJ, Huhman D, Sumner LW, Chapman KD, Blancaflor EB. Journal of Biological Chemistry; 291(53):27112-27121.

Date published: December 30, 2016
Featured in this article: Lloyd Sumner.

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Retraction: The SMN structure reveals its crucial role in snRNP assembly [Human Molecular Genetics, 24, 8, 2138-46]doi: 10.1093/hmg/ddu734. Seng CO, Magee C, Young PJ, Lorson CL, Allen JP. Human Molecular Genetics; 25(24):5516.

Date published: December 15, 2016
Featured in this article: Christian Lorson.

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Imbalanced multi-label learning for identifying antimicrobial peptides and their functional types. Lin W, Xu D. Bioinformatics; 32(24):3745-3752.

Date published: December 15, 2016
Featured in this article: Dong Xu.

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A deep tongue image features analysis model for medical application. Meng D, Cao G, Duan Y, Zhu M, Tu L, Xu J, Xu D. Proceedings - 2016 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2016; 1918-1922.

Date published: December 15, 2016
Featured in this article: Dong Xu.

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Classification of tongue images based on doublet and color space dictionary. Cao G, Ding J, Duan Y, Tu L, Xu J, Xu D. Proceedings - 2016 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2016; 1170-1175.

Date published: December 15, 2016
Featured in this article: Dong Xu.

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The genomic landscape of rapid repeated evolutionary adaptation to toxic pollution in wild fish. Reid NM, Proestou DA, Clark BW, Warren WC, Colbourne JK, Shaw JR, Karchner SI, Hahn ME, Nacci D, Oleksiak MF, Crawford DL, Whitehead A. Science; 354(6317):1305-1308.

Date published: December 9, 2016
Featured in this article: Wes Warren.

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PlantMAT: A metabolomics tool for predicting the specialized metabolic potential of a system and for large-scale metabolite identifications. Qiu F, Fine DD, Wherritt DJ, Lei Z, Sumner LW. Analytical Chemistry; 88(23):11373-11383.

Date published: December 6, 2016
Featured in this article: Zhentian Lei, Lloyd Sumner.

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The Evolution of HD2 Proteins in Green Plants. Bourque S, Jeandroz S, Grandperret V, Lehotai N, Aimé S, Soltis DE, Miles NW, Melkonian M, Deyholos MK, Leebens-Mack JH, Chase MW, Rothfels CJ, Stevenson DW, Graham SW, Wang X, Wu S, Pires JC, Edger PP, Yan Z, Xie Y, Carpenter EJ, Wong GKS, Wendehenne D, Nicolas-Francès V. Trends in Plant Science; 21(12):1008-1016.

Date published: December 1, 2016
Featured in this article: J. Chris Pires.

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Jasmonate-mediated stomatal closure under elevated CO₂ revealed by time-resolved metabolomics. Geng S, Misra BB, de Armas E, Huhman DV, Alborn HT, Sumner LW, Chen S. Plant Journal; 88(6):947-962.

Date published: December 1, 2016
Featured in this article: Lloyd Sumner.

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Robust Yet Fragile: Expression Noise, Protein Misfolding, and Gene Dosage in the Evolution of Genomes. Pires JC, Conant GC. Annual Review of Genetics; 50:113-131.

Date published: November 23, 2016
Featured in this article: J. Chris Pires.

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The pangenome of an agronomically important crop plant Brassica oleracea. Golicz AA, Bayer PE, Barker GC, Edger PP, Kim H, Martinez PA, Chan CKK, Severn-Ellis A, McCombie WR, Parkin IAP, Paterson AH, Pires JC, Sharpe AG, Tang H, Teakle GR, Town CD, Batley J, Edwards D. Nature Communications; 7:13390.

Date published: November 11, 2016
Featured in this article: J. Chris Pires.

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Interfering TAL effectors of Xanthomonas oryzae neutralize R-gene-mediated plant disease resistance. Ji Z, Ji C, Liu B, Zou L, Chen G, Yang B. Nature Communications; 7:13435.

Date published: November 4, 2016
Featured in this article: Bing Yang.

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The evolution of reactive oxygen species metabolism. Inupakutika MA, Sengupta S, Devireddy AR, Azad RK, Mittler R. Journal of Experimental Botany; 67(21):5933-5943.

Date published: November 1, 2016
Featured in this article: Ron Mittler.

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Identification of homogentisate dioxygenase as a target for vitamin E biofortification in oilseeds. Stacey MG, Cahoon RE, Nguyen HT, Cui Y, Sato S, Nguyen CT, Phoka N, Clark KM, Liang Y, Forrester J, Batek J, Do PT, Sleper DA, Clemente TE, Cahoon EB, Stacey G. Plant Physiology; 172(3):1506-1518.

Date published: November 1, 2016
Featured in this article: Minviluz (Bing) Stacey, Yaya Cui, Gary Stacey.

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Sunflower HaGPAT9-1 is the predominant GPAT during seed development. Payá-Milans M, Aznar-Moreno JA, Balbuena TS, Haslam RP, Gidda SK, Pérez-Hormaeche J, Mullen RT, Thelen JJ, Napier JA, Salas JJ, Garcés R, Martínez-Force E, Venegas-Calerón M. Plant Science; 252:42-52.

Date published: November 1, 2016
Featured in this article: Jay Thelen.

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Exploring human diseases and biological mechanisms by protein structure prediction and modeling. Wang J, Luttrell J IV, Zhang N, Khan S, Shi N, Wang MX, Kang J-Q, Wang Z, Xu D. Advances in Experimental Medicine and Biology; 939:39-61.

Date published: November 1, 2016
Featured in this article: Dong Xu.

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Soybean tip gene family analysis and characterization of GmTIP1;5 and GmTIP2;5 water transport activity. Song L, Nguyen N, Deshmukh RK, Patil GB, Prince SJ, Valliyodan B, Mutava R, Pike SM, Gassmann W, Nguyen HT. Frontiers in Plant Science; 7(OCTOBER2016):1564.

Date published: October 21, 2016
Featured in this article: Sharon Pike, Walter Gassmann.

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Differential protein structural disturbances and suppression of assembly partners produced by nonsense GABRG2 epilepsy mutations: Implications for disease phenotypic heterogeneity. Wang J, Shen D, Xia G, Shen W, MacDonald RL, Xu D, Kang J-Q. Scientific Reports; 6:35294.

Date published: October 20, 2016
Featured in this article: Dong Xu.

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PGen: Large-scale genomic variations analysis workflow and browser in SoyKB. Liu Y, Khan SM, Wang J, Rynge M, Zhnag Y, Zeng S, Chen S, Maldonado dos Santos JV, Valliyodan B, Calyam PP, Merchant N, Nguyen HT, Xu D, Joshi T. BMC Bioinformatics; 17:337.

Date published: October 6, 2016
Featured in this article: Juexin Wang, Dong Xu, Trupti Joshi.

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Genome sequence of the basal haplorrhine primate Tarsius syrichta reveals unusual insertions. Schmitz J, Noll A, Raabe CA, Churakov G, Voss R, Kiefmann M, Rozhdestvensky T, Brosius J, Baertsch R, Clawson H, Roos C, Zimin A, Minx P, Montague MJ, Wilson RK, Warren WC. Nature Communications; 7:12997.

Date published: October 6, 2016
Featured in this article: Wes Warren.

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A proteinaceous organic matrix regulates carbonate mineral production in the marine teleost intestine. Schauer KL, Lemoine CMR, Pelin A, Corradi N, Warren WC, Grosell M. Scientific Reports; 6:34494.

Date published: October 3, 2016
Featured in this article: Wes Warren.

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AT-RvD1 combined with DEX is highly effective in treating TNF-α-mediated disruption of the salivary gland epithelium. Easley JT, Maruyama CLM, Wang C-S, Baker OJ. Physiological Reports; 4(19):e12990.

Date published: October 1, 2016
Featured in this article: Olga Baker.

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GLP-1-RA corrects mitochondrial labile iron accumulation and improves β-cell function in type 2 wolfram syndrome. Danielpur L, Sohn Y-S, Karmi O, Fogel C, Zinger A, Abu-Libdeh A, Israeli T, Riahi Y, Pappo O, Birk R, Zangen DH, Mittler R, Cabantchik Z-I, Cerasi E, Nechushtai R, Leibowitz G. Journal of Clinical Endocrinology and Metabolism; 101(10):3592-3599.

Date published: October 1, 2016
Featured in this article: Ron Mittler.

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ABA is required for the accumulation of APX1 and MBF1c during a combination of water deficit and heat stress. Zandalinas SI, Balfagón D, Arbona V, Gómez-Cadenas A, Inupakutika MA, Mittler R. Journal of Experimental Botany; 67(18):5381-5390.

Date published: October 1, 2016
Featured in this article: Ron Mittler.

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Timing of rapid diversification and convergent origins of active pollination within agavoideae (Asparagaceae). McKain MR, McNeal JR, Kellar PR, Eguiarte LE, Pires JC, Leebens-Mack J. American Journal of Botany; 103(10):1717-1729.

Date published: October 1, 2016
Featured in this article: J. Chris Pires.

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A quantitative RT-PCR assay for rapid detection of Eurasian-lineage H10 subtype influenza A virus. Sun H, Xue J-L, Bailey E, Xu Y, Hu G, Baroch J, Zhang Y, Pace L, DeLiberto TJ, Wan X-F. Virologica Sinica; 31(5):444-447.

Date published: October 1, 2016
Featured in this article: XiuFeng “Henry” Wan.

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Pangolin genomes and the evolution of mammalian scales and immunity. Choo SW, Rayko M, Tan TK, Hari R, Komissarov A, Wee WY, Yurchenko AA, Kliver S, Tamazian G, Antunes A, Wilson RK, Warren WC, Koepfli K-P, Minx P, Krasheninnikova K, Kotze A, Dalton DL, Vermaak E, Paterson IC, Dobrynin P, Sitam FT, Rovie-Ryan JJ, Johnson WE, Yusoff AM, Luo S-J, Karuppannan KV, Fang G, Zheng D, Gerstein MB, Lipovich L, O'Brien SJ, Wong GJ. Genome Research; 26(10):1312-1322.

Date published: October 1, 2016
Featured in this article: Wes Warren.

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Breast cancer tumorigenicity is dependent on high expression levels of NAF-1 and the lability of its Fe-S clusters. Darash-Yahana M, Pozniak Y, Lu M, Sohn Y-S, Karmi O, Tamir S, Bai F, Song L, Jennings PA, Pikarsky E, Geiger T, Onuchic JN, Mittler R, Nechushtai R. Proceedings of the National Academy of Sciences of the United States of America; 113(39):10890-10895.

Date published: September 27, 2016
Featured in this article: Ron Mittler.

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New murine model of early onset autoimmune thyroid disease/hypothyroidism and autoimmune exocrinopathy of the salivary gland. Kayes TD, Weisman GA, Camden JM, Woods LT, Bredehoeft C, Downey EF, Cole J, Braley-Mullen H. Journal of Immunology; 197(6):2119-2130.

Date published: September 15, 2016
Featured in this article: Gary Weisman, Jean Camden, Lucas Woods.

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De novo sequencing, assembly and analysis of eight different transcriptomes from the Malayan pangolin. Mohamed Yusoff A, Tan TK, Hari R, Koepfli K-P, Wee WY, Antunes A, Sitam FT, Rovie-Ryan JJ, Karuppannan KV, Wong GJ, Lipovich L, Warren WC, O'Brien SJ, Choo SW. Scientific Reports; 6:28199.

Date published: September 13, 2016
Featured in this article: Wes Warren.

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Withania somnifera and Its Withanolides Attenuate Oxidative and Inflammatory Responses and Up-Regulate Antioxidant Responses in BV-2 Microglial Cells. Sun GY, Li R, Cui J, Hannink M, Gu Z, Fritsche KL, Lubahn DB, Simonyi A. NeuroMolecular Medicine; 18(3):241-252.

Date published: September 1, 2016
Featured in this article: Mark Hannink.

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Optimization of morpholino antisense oligonucleotides targeting the intronic repressor element1 in spinal muscular atrophy. Osman EY, Washington CW, Kaifer KA, Mazzasette C, Patitucci TN, Florea KM, Simon ME, Ko C-P, Ebert AD, Lorson CL. Molecular Therapy; 24(9):1592-1601.

Date published: September 1, 2016
Featured in this article: Christian Lorson.

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Plasma membrane proteomics in the maize primary root growth zone: novel insights into root growth adaptation to water stress. Voothuluru P, Anderson JC, Sharp RE, Peck SC. Plant Cell and Enviroment; 39(9):2043-2054.

Date published: September 1, 2016
Featured in this article: Scott Peck.

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Multiple di-leucines in the ATP7A copper transporter are required for retrograde trafficking to the trans-Golgi network. Zhu S, Shanbhag V, Hodgkinson VL, Petris MJ. Metallomics; 8(9):993-1001.

Date published: September 1, 2016
Featured in this article: Vinit Shanbhag, Michael Petris.

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Retrotransposon proliferation coincident with the evolution of dioecy in asparagus. Harkess A, Mercati F, Abbate L, McKain M, Pires JC, Sala T, Sunseri F, Falavigna A, Leebens-Mack J. G3: Genes, Genomes, Genetics; 6(9):2679-2685.

Date published: September 1, 2016
Featured in this article: J. Chris Pires.

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Computational analysis of the ligand binding site of the extracellular ATP receptor, DORN1. Nguyen CT, Tanaka K, Cao Y, Cho S-H, Xu D, Stacey G. PLoS ONE; 11(9):e0161894.

Date published: September 1, 2016
Featured in this article: Dong Xu, Gary Stacey.

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Regulation and structure of the heteromeric acetyl-CoA carboxylase. Salie MJ, Thelen JJ. Biochimica et Biophysica Acta - Molecular and Cell Biology of Lipids; 1861(9):1207-1213.

Date published: September 1, 2016
Featured in this article: Jay Thelen.

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Acyl-lipid desaturase 1 primes cold acclimation response in Arabidopsis. Chen M, Thelen JJ. Physiologia plantarum; 158(1):11-22.

Date published: September 1, 2016
Featured in this article: Jay Thelen.

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A family of negative regulators targets the committed step of de novo fatty acid biosynthesisopen. Salie MJ, Zhang N, Lancikova V, Xu D, Thelen JJ. Plant Cell; 28(9):2312-2325.

Date published: September 1, 2016
Featured in this article: Dong Xu, Jay Thelen.

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The P2Y₂ receptor mediates uptake of matrix-retained and aggregated low density lipoprotein in primary vascular smooth muscle cells. Dissmore T, Seye CI, Medeiros DM, Weisman GA, Bardford B, Mamedova L. Atherosclerosis; 252:128-135.

Date published: September 1, 2016
Featured in this article: Cheikh Seye, Gary Weisman.

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Transcriptome Analysis of Active Axillary Buds from Narrow-crown and Broad-crown Poplars Provides Insight into the Phytohormone Regulatory Network for Branching Angle. Tian Y, Wang J, Guo H, Qu K, Xu D, Hou L, Li J. Plant Molecular Biology Reporter; 39(3):595-606.

Date published: September 1, 2016
Featured in this article: Dong Xu.

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Regulatory aspects of genome-edited crops. Wolt JD, Yang B, Wang K, Spalding MH. In Vitro Cellular and Developmental Biology - Plant; 52(4):349-353.

Date published: September 1, 2016
Featured in this article: Bing Yang.

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Structural basis of HIV inhibition by translocationdefective RT inhibitor 4′-ethynyl-2-fluoro-2′- deoxyadenosine (EFdA). Salie ZL, Kirby KA, Michailidis E, Marchand B, Singh K, Rohan LC, Kodama EN, Mitsuya H, Parniak MA, Sarafianos SG. Proceedings of the National Academy of Sciences of the United States of America; 113(33):9274-9279.

Date published: August 16, 2016
Featured in this article: Kamlendra Singh.

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Generalized hierarchical sparse model for arbitrary-order interactive antigenic sites identification in flu virus data. Han L, Zhang Y, Wan X-F, Zhang T. Proceedings of the ACM SIGKDD International Conference on Knowledge Discovery and Data Mining; 13-17-August-2016:865-874.

Date published: August 13, 2016
Featured in this article: XiuFeng “Henry” Wan.

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Role of plant MicroRNA in cross-species regulatory networks of humans. Zhang H, Li Y, Liu Y, Liu H, Wang H, Jin W, Zhang Y, Zhang C, Xu D. BMC Systems Biology; 10(1):60.

Date published: August 8, 2016
Featured in this article: Dong Xu.

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Preparation of ribosomes for smFRET studies: A simplified approach. Shebl B, Menke DE, Pennella M, Poudyal RR, Burke DH, Cornish PV. Archives of Biochemistry and Biophysics; 603:118-130.

Date published: August 1, 2016
Featured in this article: Donald Burke-Agüero.

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Express yourself: Transcriptional regulation of plant innate immunity. Garner CM, Kim SH, Spears BJ, Gassmann W. Seminars in Cell and Developmental Biology; 56:150-162.

Date published: August 1, 2016
Featured in this article: Walter Gassmann.

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Genomic analysis reveals hidden biodiversity within colugos, the sister group to primates. Mason VC, Li G, Minx P, Schmitz J, Churakov G, Doronina L, Melin AD, Dominy NJ, Lim NT-L, Springer MS, Wilson RK, Warren WC, Helgen KM, Murphy WJ. Science Advances; 2(8):e1600633.

Date published: August 1, 2016
Featured in this article: Wes Warren.

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Characteristics of staminate catkin development and pollen germination in Populus×liaoningensis. Xu D, Li J, Xie L, Qi X, Wang J, Xing S. Linye Kexue/Scientia Silvae Sinicae; 52(8):38-45.

Date published: August 1, 2016
Featured in this article: Dong Xu.

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Spreading winge and flying high: The evolutionary importance of polyploidy after a century of study. Barker MS, Husband BC, Chris Pires J. American Journal of Botany; 103(7):1139-1145.

Date published: July 28, 2016
Featured in this article: J. Chris Pires.

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Identification and comparative analysis of differential gene expression in soybean leaf tissue under drought and flooding stress revealed by RNA-Seq. Chen W, Yao Q, Patil GB, Agarwal G, Deshmukh RK, Lin L, Wang B, Wang Y, Prince SJ, Song L, Xu D, An YC, Valliyodan B, Varshney RK, Nguyen HT. Frontiers in Plant Science; 7(JULY2016):1044.

Date published: July 19, 2016
Featured in this article: Dong Xu.

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Hydroponics: A versatile system to study nutrient allocation and plant responses to nutrient availability and exposure to toxic elements. Nguyen NT, McInturf SA, Mendoza-Cózatl DG. Journal of Visualized Experiments; 2016(113):e54317.

Date published: July 13, 2016
Featured in this article: David Mendoza-Cózatl.

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Current trends in salivary gland tight junctions. Baker, OJ. Tissue Barriers; 4(3):e1162348.

Date published: July 2, 2016
Featured in this article: Olga Baker.

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ZEAXANTHIN EPOXIDASE activity potentiates carotenoid degradation in maturing seed. Gonzalez-Jorge S, Mehrshahi P, Magallanes-Lundback M, Lipka AE, Angelovici R, Gore MA, DellaPenna, D. Plant Physiology; 171(3):1837-1851.

Date published: July 1, 2016
Featured in this article: Ruthie Angelovici.

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Phytochemicals and botanical extracts regulate NF-κB and Nrf2/ARE reporter activities in di TNC1 astrocytes. Ajit D, Simonyi A, Li R, Chen Z, Hannink M, Fritsche KL, Mossine VV, Smith RE, Dobbs TK, Luo R, Folk WR, Gu Z, Lubahn DB, Weisman GA, Sun GY. Neurochemistry International; 97:49-56.

Date published: July 1, 2016
Featured in this article: Mark Hannink, Gary Weisman.

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ROS, calcium, and electric signals: Key mediators of rapid systemic signaling in plants. Gilroy S, Białasek M, Suzuki N, Górecka M, Devireddy AR, Karpiński S, Mittler R. Plant Physiology; 171(3):1606-1615.

Date published: July 1, 2016
Featured in this article: Ron Mittler.

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Recent progress in understanding the role of reactive oxygen species in plant cell signaling. Dietz K-J, Mittler R, Noctor G. Plant Physiology; 171(3):1535-1539.

Date published: July 1, 2016
Featured in this article: Ron Mittler.

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Evolutionary relationships in Panicoid grasses based on plastome phylogenomics (Panicoideae; Poaceae). Burke SV, Wysocki WP, Zuloaga FO, Craine JM, Pires JC, Edger PP, Mayfield-Jones D, Clark LG, Kelchner SA, Duvall MR. BMC Plant Biology; 16(1):140.

Date published: June 18, 2016
Featured in this article: J. Chris Pires.

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Accumulation of flavonols over hydroxycinnamic acids favors oxidative damage protection under abiotic stress. Martinez V, Mestre TC, Rubio F, Girones-Vilaplana A, Moreno DA, Mittler R, Rivero RM. Frontiers in Plant Science; 7(JUNE2016):838.

Date published: June 15, 2016
Featured in this article: Ron Mittler.

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Laminin-111 Peptides Conjugated to Fibrin Hydrogels Promote Formation of Lumen Containing Parotid Gland Cell Clusters. Nam K, Jones JP, Lei P, Andreadis ST, Baker OJ. Biomacromolecules; 17(6):2293-2301.

Date published: June 13, 2016
Featured in this article: Kihoon Nam, Olga Baker.

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DHX9/RHA Binding to the PBS-Segment of the Genomic RNA during HIV-1 Assembly Bolsters Virion Infectivity. Boeras I, Song Z, Moran A, Franklin J, Brown WC, Johnson M, Boris-Lawrie K, Heng X. Journal of Molecular Biology; 428(11):2418-2429.

Date published: June 5, 2016
Featured in this article: Marc Johnson.

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Enhanced cadmium efflux and root-to-shoot translocation are conserved in the hyperaccumulator Sedum alfredii (Crassulaceae family). Zhang Z, Yu Q, Du H, Ai W, Yao X, Mendoza-Cózatl DG, Qiu B. FEBS Letters; 1757-1764.

Date published: June 1, 2016
Featured in this article: David Mendoza-Cózatl.

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The Raf-like kinase ILK1 and the high affinity K⁺ transporter HAK5 are required for innate immunity and abiotic stress response. Brauer EK, Ahsan N, Dale R, Kato N, Coluccio AE, Piñeros MA, Kochian LV, Thelen JJ, Popescu SC. Plant Physiology; 171(2):1470-1484.

Date published: June 1, 2016
Featured in this article: Jay Thelen.

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Metabolite variation in hybrid corn grain from a large-scale multisite study. Chen M, Rao RSP, Zhang Y, Zhong C, Thelen JJ. Crop Journal; 4(3):177-187.

Date published: June 1, 2016
Featured in this article: Jay Thelen.

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Pathogenesis of influenza D virus in cattle. Ferguson L, Olivier AK, Genova S, Epperson WB, Smith DR, Schneider L, Barton K, McCuan K, Webby RJ, Wan X-F. Journal of Virology; 90(12):5636-5642.

Date published: June 1, 2016
Featured in this article: XiuFeng “Henry” Wan.

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Diversity of ABC transporter genes across the plant kingdom and their potential utility in biotechnology. Lane TS, Rempe CS, Davitt J, Staton ME, Peng Y, Soltis DE, Melkonian M, Deyholos M, Leebens-Mack JH, Chase M, Rothfels CJ, Stevenson D, Graham SW, Yu J, Liu T, Pires JC, Edger PP, Zhang Y, Xie Y, Zhu Y, Carpenter E, Wong GK-S, Stewart CN Jr. BMC Biotechnology; 16(1):47.

Date published: May 31, 2016
Featured in this article: J. Chris Pires.

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TALEN-Mediated Homologous Recombination Produces Site-Directed DNA Base Change and Herbicide-Resistant Rice. Li T, Liu B, Chen CY, Yang B. Journal of Genetics and Genomics; 43(5):297-305.

Date published: May 20, 2016
Featured in this article: Bing Yang.

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Germ cell and tumor associated piRNAs in the medaka and Xiphophorus melanoma models. Kneitz S, Mishra RR, Chalopin D, Postlethwait J, Warren WC, Walter RB, Schartl M. BMC Genomics; 17(1):357.

Date published: May 17, 2016
Featured in this article: Wes Warren.

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In vivo analysis of infectivity, fusogenicity, and incorporation of a mutagenic viral glycoprotein library reveals determinants for virus incorporation. Salamango DJ, Alam KK, Burke DH, Johnson MC. Journal of Virology; 90(14):6502-6514.

Date published: May 4, 2016
Featured in this article: Donald Burke-Agüero, Marc Johnson.

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Common bean: A legume model on the rise for unraveling responses and adaptations to iron, zinc, and phosphate deficiencies. Castro-Guerrero NA, Isidra-Arellano MC, Mendoza-Cozat DG, Valdés-López O. Frontiers in Plant Science; 7(May 2016):600.

Date published: May 3, 2016
Featured in this article: Norma Castro-Guerrero, David Mendoza-Cózatl.

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The Arabidopsis immune regulator SRFR1 dampens defences against herbivory by Spodoptera exigua and parasitism by Heterodera schachtii. Nguyen PDT, Pike S, Wang J, Nepal Poudel A, Heinz R, Schultz JC, Koo AJ, Mitchum MG, Appel HM, Gassmann W. Molecular Plant Pathology; 17(4):588-600.

Date published: May 1, 2016
Featured in this article: Sharon Pike, Jianying Wang, Walter Gassmann.

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Rescue of a mouse model of spinal muscular atrophy with respiratory distress type 1 by AAV9-IGHMBP2 is dose dependent. Shababi M, Feng Z, Villalon E, Sibigtroth CM, Osman EY, Miller MR, Williams-Simon PA, Lombardi A, Sass TH, Atkinson AK, Garcia ML, Ko C-P, Lorson CL. Molecular Therapy; 24(5):855-866.

Date published: May 1, 2016
Featured in this article: Christian Lorson.

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Convergent evolution and the origin of complex phenotypes in the age of systems biology. Washburn JD, Bird KA, Conant GC, Pires JC. International Journal of Plant Sciences; 177(4):305-318.

Date published: May 1, 2016
Featured in this article: J. Chris Pires.

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Antigenic characterization of H3 subtypes of avian influenza a viruses from North America. Bailey E, Long L-P, Zhao N, Hall JS, Baroch JA, Nolting J, Senter L, Cunningham FL, Pharr GT, Hanson L, Slemons R, Deliberto TJ, Wan X-F. Avian Diseases; 60(1):346-353.

Date published: May 1, 2016
Featured in this article: Liping Long, XiuFeng “Henry” Wan.

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Detection of avian H7N9 influenza a viruses in the yangtze delta region of China during early H7N9 outbreaks. Li Y, Huang X-M, Zhao D-M, Liu Y-Z, He K-W, Liu Y-X, Chen C-H, Long L-P, Xu Y, Xie X-X, Han K-K, Liu X-Y, Yang J, Zhang Y-F, Fan F, Webby R, Wan X-F. Avian Diseases; 60(1):118-125.

Date published: May 1, 2016
Featured in this article: Liping Long, XiuFeng “Henry” Wan.

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Opsin repertoire and expression patterns in horseshoe crabs: Evidence from the genome of limulus polyphemus (arthropoda: Chelicerata). Battelle B-A, Ryan JF, Kempler KE, Saraf SR, Marten CE, Warren WC, Minx PJ, Montague MJ, Green PJ, Schmidt SA, Fulton L, Patel NH, Protas ME, Wilson RK, Porter ML. Genome Biology and Evolution; 8(5):1571-1589.

Date published: May 1, 2016
Featured in this article: Wes Warren.

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Purinergic receptors as potential therapeutic targets in Alzheimer’s disease. Woods LT, Ajit D, Camden JM, Erb L, Weisman GA. Neuropharmacology; 104:169-179.

Date published: May 1, 2016
Featured in this article: Lucas Woods, Jean Camden, Gary Weisman.

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Post-irradiated human submandibular glands display high collagen deposition, disorganized cell junctions, and an increased number of adipocytes. Nam K, Maruyama CL, Trump BG, Buchmann L, Hunt JP, Monroe MM, Baker OJ. Journal of Histochemistry and Cytochemistry; 64(6):343-352.

Date published: April 28, 2016
Featured in this article: Kihoon Nam, Olga Baker.

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Soybean roots grown under heat stress show global changes in their transcriptional and proteomic profiles. Valdés-López O, Batek J, Gomez-Hernandez N, Nguyen CT, Isidra-Arellano MC, Zhang N, Joshi T, Xu D, Hixson KK, Weitz KK, Alrich JT, Paša-Tolić L, Stacey G. Frontiers in Plant Science; 7(APR2016):517.

Date published: April 25, 2016
Featured in this article: Trupti Joshi, Dong Xu, Gary Stacey.

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ALX/FPR2 modulates anti-inflammatory responses in mouse submandibular gland. Wang C-S, Wee Y, Yang C-H, Melvin JE, Baker OJ. Scientific Reports; 6:24244.

Date published: April 11, 2016
Featured in this article: Olga Baker.

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Evaluation of a custom single Peltier-cooled ablation cell for elemental imaging of biological samples in laser ablation-inductively coupled plasma-mass spectrometry (LA-ICP-MS). Hamilton JS, Gorishek EL, Mach PM, Sturtevant D, Ladage ML, Suzuki N, Padilla PA, Mittler R, Chapman KD, Verbeck GF. Journal of Analytical Atomic Spectrometry; 31(4):1030-1033.

Date published: April 1, 2016
Featured in this article: Ron Mittler.

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Editorial overview: Genome studies and molecular genetics: Of plant genes, genomes, and genomics. Van de Peer Y, Pires JC. Current Opinion in Plant Biology; 30:iv-vi.

Date published: April 1, 2016
Featured in this article: J. Chris Pires.

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Virological failure in patients with HIV-1 subtype C receiving antiretroviral therapy: an analysis of a prospective national cohort in Sweden. Häggblom A, Svedhem V, Singh K, Sönnerborg A, Neogi U. The Lancet HIV; 3(4):e166-e174.

Date published: April 1, 2016
Featured in this article: Kamlendra Singh.

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Differential growth responses of Brachypodium distachyon genotypes to inoculation with plant growth promoting rhizobacteria. do Amaral FP, Pankievicz VCS, Arisi ACM, de Souza EM, Pedrosa F, Stacey G. Plant Molecular Biology; 90(6):689-697.

Date published: April 1, 2016
Featured in this article: Gary Stacey.

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Improving degree-based variable ordering heuristics for solving constraint satisfaction problems. Li H, Liang Y, Zhang N, Guo J, Xu D, Li Z. Journal of Heuristics; 22(2):125-145.

Date published: April 1, 2016
Featured in this article: Dong Xu.

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The broadly effective recessive resistance gene xa5 of rice is a virulence effector-dependent quantitative trait for bacterial blight. Huang S, Antony G, Li T, Liu B, Obasa K, Yang B, White FF. Plant Journal; 86(2):186-194.

Date published: April 1, 2016
Featured in this article: Bing Yang.

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Landscape of genomic diversity and trait discovery in soybean. Valliyodan B, Dan Qiu, Patil G, Zeng P, Huang J, Dai L, Chen C, Li Y, Joshi T, Song L, Vuong TD, Musket TA, Xu D, Shannon JG, Shifeng C, Liu X, Nguyen HT. Scientific Reports; 6:23598.

Date published: March 31, 2016
Featured in this article: Trupti Joshi, Dong Xu.

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A phylogenomic assessment of ancient polyploidy and genome evolution across the poales. McKain MR, Tang H, McNeal JR, Ayyampalayam S, Davis JI, Depamphilis CW, Givnish TJ, Chris Pires J, Stevenson DW, Leebens-Mack JH. Genome Biology and Evolution; 8(4):1150-1164.

Date published: March 17, 2016
Featured in this article: J. Chris Pires.

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Erratum: Genome of Rhodnius prolixus, an insect vector of Chagas disease, reveals unique adaptations to hematophagy and parasite infection (Proceedings of the National Academy of Sciences of the United States of America (2015) 112 (14936-14941) DOI 10.1073/pnas.1506226112). Mesquita RD, Vionette-Amaral RJ, Lowenberger C, Rivera-Pomar R, Monteiro FA, Minx P, Spieth J, Carvalho AB, Panzera F, Lawson D, Torres AQ, Ribeiro JMC, Sorgine MHF, Waterhouse RM, Montague MJ, Abad-Franch F, Alves-Bezerra M, Amaral LR, Araujo HM, Araujo RN, Aravind L, Atella GC, Azambuja P, Berni M, Bittencourt-Cunha PR, Braz GRC, Calderón-Fernández G, A Carareto CM, Christensen MB, Costa IR, Costa SG, Dansa M, Daumas-Filho CRO, De-Paula IF, Dias FA, Dimopoulos G, Emrich SJ, Esponda-Behrens N, Fampa P, Fernandez-Medina RD, Da Fonseca RN, Fontenele M, Fronick C, Fulton LA, Gandara AC, Garcia ES, Genta FA, Giraldo-Calderón GI, Gomes B, Gondim KC, Granzotto A, Guarneri AA, Guigó R, Harry M, Hughes DST, Jablonka W, Jacquin-Joly E, Juárez MP, Koerich LB, Latorre-Estivalis JM, Lavore A, Lazoski C, Lazzari CR, Lorenzo MG, Majerowicz D, Mariotti M, Masuda H, Megy K, Melo ACA, Missirlis F, Mota T, Noriega FG, Nunes RD, Oliveira RLL, Oliverira-Silva GO, Pascual A, Pavan MG, Peixoto AA, Pereira MH, Pike A, Polycarpo C, Prosdocimi F, Ribeiro-Rodrigues R, Robertson HM, Salerno AP, Salmon D, Santesmasses D, Schama R, Seabra-Junior ES, Silva-Cardoso L, Silva-Neto MAC, Souza-Gomes M, Sterkel M, Taracena ML, Tojo M, Tu ZJ, Tubio JMC, Ursic-Bedoya R, Venancio TM, Walter-Nuno AB, Wilson D, Warren WC, Wilson RK, Huebner E, Dotson EM, Oliveira PL. Proceedings of the National Academy of Sciences of the United States of America; 113(10):E1415-E1416.

Date published: March 8, 2016
Featured in this article: Wes Warren.

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Identification of AtOPT4 as a Plant Glutathione Transporter. Zhang Z, Xie Q, Jobe TO, Kau AR, Wang C, Li Y, Qiu B, Wang Q, Mendoza-Cózatl DG, Schroeder JI. Molecular Plant; 9(3):481-484.

Date published: March 7, 2016
Featured in this article: David Mendoza-Cózatl.

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Preface. Gassmann W, Appel HM, Oliver MJ. Journal of Experimental Botany; 67(7):2023-2024.

Date published: March 1, 2016
Featured in this article: Walter Gassmann.

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An Improved Transient Expression System Using Arabidopsis Protoplasts. Cao Y, Li H, Pham AQ, Stacey G. Current Protocols In Plant Biology; 1(2):285-291.

Date published: March 1, 2016
Featured in this article: Gary Stacey.

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Evaluation of genetic variation among Brazilian soybean cultivars through genome resequencing. dos Santos JVM, Valliyodan B, Joshi T, Khan SM, Liu Y, Wang J, Vuong TD, de Oliveira MF, Marcelino-Guimarães FC, Xu D, Nguyen HT, Abdelnoor RV. BMC Genomics; 17(1):110.

Date published: February 13, 2016
Featured in this article: Trupti Joshi, Juexin Wang, Dong Xu.

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Limited Antigenic Diversity in Contemporary H7 Avian-Origin Influenza A Viruses from North America. Xu Y, Bailey E, Spackman E, Li T, Wang H, Long L-P, Baroch JA, Cunningham FL, Lin X, Jarman RG, DeLiberto TJ, Wan X-F. Scientific Reports; 6:20688.

Date published: February 9, 2016
Featured in this article: Liping Long, XiuFeng “Henry” Wan.

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Divergence and functional degradation of a sex chromosome-like supergene. Tuttle EM, Bergland AO, Korody ML, Brewer MS, Newhouse DJ, Minx P, Stager M, Betuel A, Cheviron ZA, Warren WC, Gonser RA, Balakrishnan CN. Current Biology; 26(3):344-350.

Date published: February 8, 2016
Featured in this article: Wes Warren.

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Resolution of brassicaceae phylogeny using nuclear genes uncovers nested radiations and supports convergent morphological evolution. Huang C-H, Sun R, Hu Y, Zeng L, Zhang N, Cai L, Zhang Q, Koch MA, Al-Shehbaz I, Edger PP, Pires JC, Tan D-Y, Zhong Y, Ma H. Molecular Biology and Evolution; 33(2):394-412.

Date published: February 1, 2016
Featured in this article: J. Chris Pires.

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Factors influencing the efficacy of rilpivirine in HIV-1 subtype C in low- and middle-income countries. Neogi U, Häggblom A, Singh K, Rogers LC, Rao SD, Amogne W, Schülter E, Zazzi M, Arnold E, Sarafianos SG, Sönnerborg A. Journal of Antimicrobial Chemotherapy; 71(2):367-371.

Date published: February 1, 2016
Featured in this article: Kamlendra Singh.

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FALCON@home: A high-throughput protein structure prediction server based on remote homologue recognition. Wang C, Zhang H, Zheng W-M, Xu D, Zhu J, Wang B, Ning K, Sun S, Li SC, Bu D. Bioinformatics; 32(3):462-464.

Date published: February 1, 2016
Featured in this article: Dong Xu.

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The Regulatory Status of Genome-edited Crops. Wolt JD, Wang K, Yang B. Plant Biotechnology Journal; 14(2):510-518.

Date published: February 1, 2016
Featured in this article: Bing Yang.

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Use of designer nucleases for targeted gene and genome editing in plants. Weeks DP, Spalding MH, Yang B. Plant Biotechnology Journal; 14(2):483-495.

Date published: February 1, 2016
Featured in this article: Bing Yang.

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Placental development in a mouse model of spinal muscular atrophy. Van Gronigen Caesar G, Dale JM, Osman EY, Garcia ML, Lorson CL, Schulz LC. Biochemical and Biophysical Research Communications; 470(1):82-87.

Date published: January 29, 2016
Featured in this article: Christian Lorson.

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An NF-κB – EphrinA5-Dependent Communication between NG2+ Interstitial Cells and Myoblasts Promotes Muscle Growth in Neonates. Gu J-M, Wang DJ, Peterson JM, Shintaku J, Liyanarachchi S, Coppola V, Frakes AE, Kaspar BK, Cornelison DD, Guttridge DC. Developmental Cell; 36(2):215-224.

Date published: January 25, 2016
Featured in this article: D Cornelison.

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Evolutionary signals of selection on cognition from the great tit genome and methylome. Laine VN, Gossmann TI, Schachtschneider KM, Garroway CJ, Madsen O, Verhoeven KJF, De Jager V, Megens H-J, Warren WC, Minx P, Crooijmans RPMA, Corcoran P, Adriaensen F, Belda E, Bushuev A, Cichon M, Charmantier A, Dingemanse N, Doligez B, Eeva T, Erikstad KE, Fedorov S, Hau M, Hille S, Hinde C, Kempenaers B, Kerimov A, Krist M, Mand R, Matthysen E, Nager R, Norte C, Orell M, Richner H, Slagsvold T, Tilgar V, Tinbergen J, Torok J, Tschirren B, Yuta T, Sheldon BC, Slate J, Zeng K, Van Oers K, Visser ME, Groenen MAM. Nature Communications; 7:10474.

Date published: January 25, 2016
Featured in this article: Wes Warren.

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Predicting DNA Methylation State of CpG Dinucleotide Using Genome Topological Features and Deep Networks. Wang Y, Liu T, Xu D, Shi H, Zhang C, Mo Y-Y, Wang Z. Scientific Reports; 6:19598.

Date published: January 22, 2016
Featured in this article: Dong Xu.

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Genome-wide transcriptome analysis of soybean primary root under varying water-deficit conditions. Song L, Prince S, Valliyodan B, Joshi T, Maldonado dos Santos JV, Wang J, Lin L, Wan J, Wang Y, Xu D, Nugyen HT. BMC Genomics; 17(1):57.

Date published: January 15, 2016
Featured in this article: Trupti Joshi, Dong Xu.

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A full Bayesian partition model for identifying hypo- and hyper-methylated loci from single nucleotide resolution sequencing data. Wang H, He C, Kushwaha G, Xu D, Qiu J. BMC Bioinformatics; 17(1):S7.

Date published: January 11, 2016
Featured in this article: Dong Xu.

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X. couchianus and X. hellerii genome models provide genomic variation insight among Xiphophorus species. Shen Y, Chalopin D, Garcia T, Boswell M, Boswell W, Shiryev SA, Agarwala R, Volff J-N, Postlethwait JH, Schartl M, Minx P, Warren WC, Walter RB. BMC Genomics; 17(1):37.

Date published: January 7, 2016
Featured in this article: Wes Warren.

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Selecting superior de novo transcriptome assemblies: Lessons learned by leveraging the best plant genome. Honaas LA, Wafula EK, Wickett NJ, Der JP, Zhang Y, Edger PP, Altman NS, Chris Pires J, Leebens-Mack JH, DePamphilis CW. PLoS ONE; 11(1):e0146062.

Date published: January 5, 2016
Featured in this article: J. Chris Pires.

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RDF Sketch Maps – Knowledge complexity reduction for precision medicine analytics. Thanintorn N, Wang J, Ersoy I, Al-Taie Z, Jiang Y, Wang D, Verma M, Joshi T, Hammer R, Xu D, Shin D. Pacific Symposium on Biocomputing; 417-428.

Date published: January 4, 2016
Featured in this article: Juexin Wang, Yuexu Jiang, Duolin Wang, Trupti Joshi, Dong Xu.

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Activation of apoptosis in NAF-1-deficient human epithelial breast cancer cells. Holt SH, Darash-Yahana M, Sohn YS, Song L, Karmi O, Tamir S, Michaeli D, Luo Y, Paddock ML, Jennings PA, Onuchic JN, Azad RK, Pikarsky E, Cabantchik IZ, Nechushtai R, Mittler R. Journal of Cell Science; 129(1):155-165.

Date published: January 1, 2016
Featured in this article: Ron Mittler.

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ABA is required for plant acclimation to a combination of salt and heat stress. Suzuki N, Bassil E, Hamilton JS, Inupakutika MA, Zandalinas SI, Tripathy D, Luo Y, Dion E, Fukui G, Kumazaki A, Nakano R, Rivero RM, Verbeck GF, Azad RK, Blumwald E, Mittler R. PLoS ONE; 11(1):0147625.

Date published: January 1, 2016
Featured in this article: Ron Mittler.

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The Menkes and Wilson disease genes counteract in copper toxicosis in Labrador retrievers: A new canine model for copper-metabolism disorders. Fieten H, Gill Y, Martin AJ, Concilli M, Dirksen K, Van Steenbeek FG, Spee B, Van Den Ingh TSGAM, Martens ECCP, Festa P, Chesi G, Van De Sluis B, Houwen RHJH, Watson AL, Aulchenko YS, Hodgkinson VL, Zhu S, Petris MJ, Polishchuk RS, Leegwater PAJ, Rothuizen J. DMM Disease Models and Mechanisms; 9(1):25-38.

Date published: January 1, 2016
Featured in this article: Michael Petris.

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Plastid genomes reveal support for deep phylogenetic relationships and extensive rate variation among palms and other commelinid monocots. Barrett CF, Baker WJ, Comer JR, Conran JG, Lahmeyer SC, Leebens-Mack JH, Li J, Lim GS, Mayfield-Jones DR, Perez L, Medina J, Pires JC, Santos C, Wm Stevenson D, Zomlefer WB, Davis JI. New Phytologist; 209(2):855-870.

Date published: January 1, 2016
Featured in this article: J. Chris Pires.

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Identification and functional characterization of soybean root hair microRNAs expressed in response to Bradyrhizobium japonicum infection. Yan Z, Hossain MS, Valdés-López O, Hoang NT, Zhai J, Wang J, Liabault M, Brechenmacher L, Findley S, Joshi T, Qiu L, Sherrier DJ, Ji T, Meyers BC, Xu D, Stacey G. Plant Biotechnology Journal; 14(1):332-341.

Date published: January 1, 2016
Featured in this article: Trupti Joshi, Dong Xu, Gary Stacey.

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The time is right to focus on model organism metabolomes. Edison AS, Hall RD, Junot C, Karp PD, Kurland IJ, Mistrik R, Reed LK, Saito K, Salek RM, Steinbeck C, Sumner LW, Viant MR. Metabolites; 6(1):8.

Date published: January 1, 2016
Featured in this article: Lloyd Sumner.

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INTEGRATE: Gene fusion discovery using whole genome and transcriptome data. Zhang J, White NM, Schmidt HK, Fulton RS, Tomlinson C, Warren WC, Wilson RK, Maher CA. Genome Research; 26(1):108-118.

Date published: January 1, 2016
Featured in this article: Wes Warren.

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Patterns of genome-wide variation in Glossina fuscipes fuscipes tsetse flies from Uganda. Gloria-Soria A, Dunn WA, Telleria EL, Evans BR, Okedi L, Echodu R, Warren WC, Montague MJ, Aksoy S, Caccone A. G3: Genes, Genomes, Genetics; 6(6):1573-1584.

Date published: January 1, 2016
Featured in this article: Wes Warren.

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A high-resolution SNP array-based linkage map anchors a new domestic cat draft genome assembly and provides detailed patterns of recombination. Li G, Hillier LW, Grahn RA, Zimin AV, David VA, Menotti-Raymond M, Middleton R, Hannah S, Hendrickson S, Makunin A, O'Brien SJ, Minx P, Wilson RK, Lyons LA, Warren WC, Murphy WJ. G3: Genes, Genomes, Genetics; 6(6):1607-1616.

Date published: January 1, 2016
Featured in this article: Wes Warren.

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The physarum polycephalum genome reveals extensive use of prokaryotic two-component and metazoan-type tyrosine kinase signaling. Schaap P, Barrantes I, Minx P, Sasaki N, Anderson RW, Bénard M, Biggar KK, Buchler NE, Bundschuh R, Chen X, Fronick C, Fulton L, Golderer G, Jahn N, Knoop V, Landerweber LF, Maric C, Miller D, Noegel AA, Peace R, Pierron G, Sasaki T, Schallenberg-Rüdinger M, Schleicher M, Singh R, Spaller T, Storey KB, Suzuki T, Tomlinson C, Tyson JJ, Warren WC, Werner ER, Werner-Felmayer G, Wilson RK, Winckler T, Gott JM, Glöckner G, Marwan W. Genome Biology and Evolution; 8(1):109-125.

Date published: January 1, 2016
Featured in this article: Wes Warren.

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PGD: a pangolin genome hub for the research community. Tan TK, Tan KY, Hari R, Mohamed Yusoff A, Wong GJ, Siow CC, Mutha NV, Rayko M, Komissarov A, Dobrynin P, Krasheninnikova K, Tamazian G, Paterson IC, Warren WC, Johnson WE, O'Brien SJ, Choo SW. Database : the journal of biological databases and curation; 2016.

Date published: January 1, 2016
Featured in this article: Wes Warren.

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Network stratification analysis for identifying function-specific network layers. Zhang C, Wang J, Zhang C, Liu J, Xu D, Chen L. Molecular BioSystems; 12(4):1232-1240.

Date published: January 1, 2016
Featured in this article: Dong Xu.

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Hypomethylation coordinates antagonistically with hypermethylation in cancer development: A case study of leukemia. Kushwaha G, Dozmorov M, Wren JD, Qiu J, Shi H, Xu D. Human Genomics; 10:18.

Date published: January 1, 2016
Featured in this article: Dong Xu.

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Complete genome sequence of the African strain AXO1947 of Xanthomonas oryzae pv. oryzae. Huguet-Tapoa JC, Peng Z, Yang B, Yin Z, Liu S, White FF. Genome Announcements; 4(1):e01730-15.

Date published: January 1, 2016
Featured in this article: Bing Yang.

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2015

Loss of function of folylpolyglutamate synthetase 1 reduces lignin content and improves cell wall digestibility in Arabidopsis. Srivastava AC, Chen F, Ray T, Pattathil S, Peña MJ, Avci U, Li H, Huhman DV, Backe J, Urbanowicz B, Miller JS, Bedair M, Wyman CE, Sumner LW, York WS, Hahn MG, Dixon RA, Blancaflor EB, Tang Y. Biotechnology for Biofuels; 8(1):403.

Date published: December 21, 2015
Featured in this article: Lloyd Sumner.

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Polymorphism of the glucosyltransferase gene (ycjM) in Escherichia coli and its use for tracking human fecal pollution in water. Deng D, Zhang N, Xu D, Reed M, Liu F, Zheng G. Science of the Total Environment; 537:260-267.

Date published: December 15, 2015
Featured in this article: Dong Xu.

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Whole-genome gene expression profiling revealed genes and pathways potentially involved in regulating interactions of soybean with cyst nematode (Heterodera glycines Ichinohe). Wan J, Vuong T, Jiao Y, Joshi T, Zhang H, Xu D, Nguyen HT. BMC Genomics; 16(1):148.

Date published: December 12, 2015
Featured in this article: Trupti Joshi, Dong Xu.

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Ephrin-A3 promotes and maintains slow muscle fiber identity during postnatal development and reinnervation. Stark DA, Coffey NJ, Pancoast HR, Arnold LL, Walker JPD, Vallée J, Robitaille R, Garcia ML, Cornelison DDW. Journal of Cell Biology; 211(5):1077-1091.

Date published: December 7, 2015
Featured in this article: D Cornelison.

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Neural activation patterns underlying basolateral amygdala influence on intra-accumbens opioid-driven consummatory versus appetitive high-fat feeding behaviors in the rat. Parker KE, McCabe MP, Johns HW, Lund DK, Odu F, Sharma R, Thakkar MM, Cornelison DDW, Will MJ. Behavioral Neuroscience; 129(6):812-821.

Date published: December 1, 2015
Featured in this article: D Cornelison.

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Meeting report: Fungal genomics meets social media: Highlights of the 28th fungal genetics conference at asilomar. Momany M, Di Pietro A, Alexander WG, Barker BM, Harb OS, Kamoun S, Martin F, Chris Pires J, Stajich JE, Thomma BPHJ, Unruh S. G3: Genes, Genomes, Genetics; 5(12):2523-2525.

Date published: December 1, 2015
Featured in this article: J. Chris Pires.

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Core clock, SUB1, and ABAR genes mediate flooding and drought responses via alternative splicing in soybean. Syed NH, Prince SJ, Mutava RN, Patil G, Li S, Chen W, Babu V, Joshi T, Khan S, Nguyen HT. Journal of Experimental Botany; 66(22):7129-7149.

Date published: December 1, 2015
Featured in this article: Trupti Joshi.

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Exploring soybean metabolic pathways based on probabilistic graphical model and knowledge-based methods. Hou J, Stacey G, Cheng J. Eurasip Journal on Bioinformatics and Systems Biology; 2015(1):5.

Date published: December 1, 2015
Featured in this article: Gary Stacey.

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Influenza D virus infection in Mississippi beef cattle. Ferguson L, Eckard L, Epperson WB, Long L-P, Smith D, Huston C, Genova S, Webby R, Wan X-F. Virology; 486:28-34.

Date published: December 1, 2015
Featured in this article: Liping Long, XiuFeng “Henry” Wan.

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Genome of Rhodnius prolixus, an insect vector of Chagas disease, reveals unique adaptations to hematophagy and parasite infection. Mesquita RD, Vionette-Amaral RJ, Lowenberger C, Rivera-Pomar R, Monteiro FA, Minx P, Spieth J, Carvalho AB, Panzera F, Lawson D, Torres AQ, Ribeiro JMC, Sorgine MHF, Waterhouse RM, Montague MJ, Abad-Franch F, Alves-Bezerra M, Amaral LR, Araujo HM, Araujo RN, Aravind L, Atella GC, Azambuja P, Berni M, Bittencourt-Cunha PR, Braz GRC, Calderón-Fernández G, A Carareto CM, Christensen MB, Costa IR, Costa SG, Dansa M, Daumas-Filho CRO, De-Paula IF, Dias FA, Dimopoulos G, Emrich SJ, Esponda-Behrens N, Fampa P, Fernandez-Medina RD, Da Fonseca RN, Fontenele M, Fronick C, Fulton LA, Gandara AC, Garcia ES, Genta FA, Giraldo-Calderón GI, Gomes B, Gondim KC, Granzotto A, Guarneri AA, Guigó R, Harry M, Hughes DST, Jablonka W, Jacquin-Joly E, Juárez MP, Koerich LB, Latorre-Estivalis JM, Lavore A, Lazoski C, Lazzari CR, Lorenzo MG, Majerowicz D, Mariotti M, Masuda H, Megy K, Melo ACA, Missirlis F, Mota T, Noriega FG, Nunes RD, Oliveira RLL, Oliverira-Silva GO, Pascual A, Pavan MG, Peixoto AA, Pereira MH, Pike A, Polycarpo C, Prosdocimi F, Ribeiro-Rodrigues R, Robertson HM, Salerno AP, Salmon D, Santesmasses D, Schama R, Seabra-Junior ES, Silva-Cardoso L, Silva-Neto MAC, Souza-Gomes M, Sterkel M, Taracena ML, Tojo M, Tu ZJ, Tubio JMC, Ursic-Bedoya R, Venancio TM, Walter-Nuno AB, Wilson D, Warren WC, Wilson RK, Huebner E, Dotson EM, Oliveira PL. Proceedings of the National Academy of Sciences of the United States of America; 112(48):14936-14941.

Date published: December 1, 2015
Featured in this article: Wes Warren.

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The genome of the vervet (Chlorocebus æthiops sabæus). Warren WC, Jasinska AJ, García-Pérez R, Svardal H, Tomlinson C, Rocchi M, Archidiacono N, Capozzi O, Minx P, Montague MJ, Kyung K, Hillier LW, Kremitzki M, Graves T, Chiang C, Hughes J, Tran N, Huang Y, Ramensky V, Choi O-W, Jung YJ, Schmitt CA, Juretic N, Wasserscheid J, Turner TR, Wiseman RW, Tuscher JJ, Karl JA, Schmitz JE, Zahn R, O'Connor DH, Redmond E, Nisbett A, Jacquelin B, Müller-Trutwin MC, Brenchley JM, Dione M, Antonio M, Schroth GP, Kaplan JR, Jorgensen MJ, Thomas GWC, Hahn MW, Raney BJ, Aken B, Nag R, Schmitz J, Churakov G, Noll A, Stanyon R, Webb D, Thibaud-Nissen F, Nordborg M, Marques-Bonet T, Dewar K, Weinstock GM, Wilson RK, Freimer NB. Genome Research; 25(12):1921-1933.

Date published: December 1, 2015
Featured in this article: Wes Warren.

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Whole Body Melanoma Transcriptome Response in Medaka. Schartl M, Shen Y, Maurus K, Walter R, Tomlinson C, Wilson RK, Postlethwait J, Warren WC. PLoS ONE; 10(12):0143057.

Date published: December 1, 2015
Featured in this article: Wes Warren.

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Seed filling in domesticated maize and rice depends on SWEET-mediated hexose transport. Sosso D, Luo D, Li Q-B, Sasse J, Yang J, Gendrot G, Suzuki M, Koch KE, McCarty DR, Chourey PS, Rogowsky PM, Ross-Ibarra J, Yang B, Frommer WB. Nature Genetics; 47(12):1489-1493.

Date published: December 1, 2015
Featured in this article: Bing Yang.

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Identification and analysis of divergent immune gene families within the Tasmanian devil genome. Morris KM, Cheng Y, Warren W, Papenfuss AT, Belov K. BMC Genomics; 16(1):1017.

Date published: November 26, 2015
Featured in this article: Wes Warren.

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A Bayesian model for detection of high-order interactions among genetic variants in genome-wide association studies. Wang J, Joshi T, Valliyodan B, Shi H, Liang Y, Nguyen HT, Zhang J, Xu D. BMC Genomics; 16(1):1011.

Date published: November 25, 2015
Featured in this article: Juexin Wang, Trupti Joshi, Dong Xu.

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Xyloglucan, galactomannan, glucuronoxylan, and rhamnogalacturonan I do not have identical structures in soybean root and root hair cell walls. Muszyński A, O'Neill MA, Ramasamy E, Pattathil S, Avci U, Peña MJ, Libault M, Hossain MS, Brechenmacher L, York WS, Barbosa RM, Hahn MG, Stacey G, Carlson RW. Planta; 242(5):1123-1138.

Date published: November 22, 2015
Featured in this article: Gary Stacey.

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Characterizing the murine leukemia virus envelope glycoprotein membrane-spanning domain for its roles in interface alignment and fusogenicity. Salamango DJ, Johnson MC. Journal of Virology; 89(24):12492-12500.

Date published: November 17, 2015
Featured in this article: Marc Johnson.

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Autonomous requirements of the Menkes disease protein in the nervous system. Hodgkinson VL, Zhu S, Wang Y, Ladomersky E, Nickelson K, Weisman GA, Lee J, Gitlin JD, Petris MJ. American Journal of Physiology - Cell Physiology; 309(10):660-668.

Date published: November 15, 2015
Featured in this article: Gary Weisman, Michael Petris.

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Erratum to Testing the Effect of Internal Genes Derived from a Wild-Bird-Origin H9N2 Influenza A Virus on the Pathogenicity of an A/H7N9 Virus, [Cell Reports, 12, (2015) 1831-1841]. Su W, Wang C, Luo J, Zhao Y, Wu Y, Chen L, Zhao N, Li M, Xing C, Liu H, Zhang H, Chang Y-F, Li T, Ding H, Wan X, He H. Cell Reports; 13(6):1283.

Date published: November 10, 2015
Featured in this article: XiuFeng “Henry” Wan.

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Stem cell-soluble signals enhance multilumen formation in SMG cell clusters. Maruyama CLM, Leigh NJ, Nelson JW, McCall AD, Mellas RE, Lei P, Andreadis ST, Baker OJ. Journal of Dental Research; 94(11):1610-1617.

Date published: November 1, 2015
Featured in this article: Olga Baker.

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Ultra-fast alterations in mRNA levels uncover multiple players in light stress acclimation in plants. Suzuki N, Devireddy AR, Inupakutika MA, Baxter A, Miller G, Song L, Shulaev E, Azad RK, Shulaev V, Mittler R. Plant Journal; 84(4):760-772.

Date published: November 1, 2015
Featured in this article: Ron Mittler.

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Evolution of Asparagus L. (Asparagaceae): Out-of-South-Africa and multiple origins of sexual dimorphism. Norup MF, Petersen G, Burrows S, Bouchenak-Khelladi Y, Leebens-Mack J, Pires JC, Linder HP, Seberg O. Molecular Phylogenetics and Evolution; 92:25-44.

Date published: November 1, 2015
Featured in this article: J. Chris Pires.

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Comparative analysis of the drought-responsive transcriptome in soybean lines contrasting for canopy wilting. Prince SJ, Joshi T, Mutava RN, Syed N, Joao Vitor MDS, Patil G, Song L, Wang J, Lin L, Chen W, Shannon JG, Valliyodan B, Xu D, Nguyen HT. Plant Science; 240:65-78.

Date published: November 1, 2015
Featured in this article: Trupti Joshi, Dong Xu.

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Association analyses of large-scale glycan microarray data reveal novel host-specific substructures in influenza A virus binding glycans. Zhao N, Martin BE, Yang C-K, Luo F, Wan X-F. Scientific Reports; 5:15778.

Date published: October 28, 2015
Featured in this article: XiuFeng “Henry” Wan.

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Quercetin attenuates inflammatory responses in BV-2 microglial cells: Role of MAPKs on the Nrf2 pathway and induction of heme oxygenase-1. Sun GY, Chen Z, Jasmer KJ, Chuang DY, Gu Z, Hannink M, Simonyi A. PLoS ONE; 10(10):e0141509.

Date published: October 27, 2015
Featured in this article: Kimberly Jasmer, Mark Hannink.

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H3N2 Mismatch of 2014-15 Northern Hemisphere Influenza Vaccines and Head-to-head Comparison between Human and Ferret Antisera derived Antigenic Maps. Xie H, Wan X-F, Ye Z, Plant EP, Zhao Y, Xu Y, Li X, Finch C, Zhao N, Kawano T, Zoueva O, Chiang M-J, Jing X, Lin Z, Zhang A, Zhu Y. Scientific Reports; 5:15279.

Date published: October 16, 2015
Featured in this article: XiuFeng “Henry” Wan.

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Erratum: Carbonic anhydrases, EPF2 and a novel protease mediate CO2 control of stomatal development (Nature (2014) 513 (246-250) DOI: 10.1038/nature13452). Engineer CB, Ghassemian M, Anderson JC, Peck SC, Hu H, Schroeder JI. Nature; 526(7573):458.

Date published: October 15, 2015
Featured in this article: Scott Peck.

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Cancer-related NEET proteins transfer 2Fe-2S clusters to anamorsin, a protein required for cytosolic iron-sulfur cluster biogenesis. Lipper CH, Paddock ML, Onuchic JN, Mittler R, Nechushtai R, Jennings PA. PLoS ONE; 10(10):e0139699.

Date published: October 8, 2015
Featured in this article: Ron Mittler.

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Identification of Soybean Proteins and Genes Differentially Regulated in Near Isogenic Lines Differing in Resistance to Aphid Infestation. Brechenmacher L, Nguyen THN, Zhang N, Jun T-H, Xu D, Mian MAR, Stacey G. Journal of Proteome Research; 14(10):4137-4146.

Date published: October 2, 2015
Featured in this article: Dong Xu, Gary Stacey.

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NEDD4 Regulates PAX7 Levels Promoting Activation of the Differentiation Program in Skeletal Muscle Precursors. Bustos F, De La Vega E, Cabezas F, Thompson J, Cornelison DDW, Olwin BB, Yates JR, Olguín HC. Stem Cells; 33(10):3138-3151.

Date published: October 1, 2015
Featured in this article: D Cornelison.

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4′-modified nucleoside analogs: Potent inhibitors active against entecavir-resistant hepatitis B virus. Takamatsu Y, Tanaka Y, Kohgo S, Murakami S, Singh K, Das D, Venzon DJ, Amano M, Higashi-Kuwata N, Aoki M, Delino NS, Hayashi S, Takahashi S, Sukenaga Y, Haraguchi K, Sarafianos SG, Maeda K, Mitsuya H. Hepatology; 62(4):1024-1036.

Date published: October 1, 2015
Featured in this article: Kamlendra Singh.

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Selective refinement and selection of near-native models in protein structure prediction. Zhang J, Barz B, Zhang J, Xu D, Kosztin I. Proteins: Structure, Function and Bioinformatics; 83(10):1823-1835.

Date published: October 1, 2015
Featured in this article: Dong Xu.

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Testing the Effect of Internal Genes Derived from a Wild-Bird-Origin H9N2 Influenza A Virus on the Pathogenicity of an A/H7N9 Virus. Su W, Wang C, Luo J, Zhao Y, Wu Y, Chen L, Zhao N, Li M, Xing C, Liu H, Zhang H, Chang Y-F, Li T, Ding H, Wan X, He H. Cell Reports; 12(11):1831-1841.

Date published: September 22, 2015
Featured in this article: XiuFeng “Henry” Wan.

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Retention projection enables accurate calculation of liquid chromatographic retention times across labs and methods. Abate-Pella D, Freund DM, Ma Y, Simón-Manso Y, Hollender J, Broeckling CD, Huhman DV, Krokhin OV, Stoll DR, Hegeman AD, Kind T, Fiehn O, Schymanski EL, Prenni JE, Sumner LW, Boswell PG. Journal of Chromatography A; 1412:43-51.

Date published: September 18, 2015
Featured in this article: Lloyd Sumner.

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The players may change but the game remains: Network analyses of ruminal microbiomes suggest taxonomic differences mask functional similarity. Taxis TM, Wolff S, Gregg SJ, Minton NO, Zhang C, Dai J, Schnabel RD, Taylor JF, Kerley MS, Pires JC, Lamberson WR, Conant GC. Nucleic Acids Research; 43(20):9600-9612.

Date published: September 15, 2015
Featured in this article: J. Chris Pires.

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MET-XAlign: A Metabolite Cross-Alignment Tool for LC/MS-Based Comparative Metabolomics. Zhang W, Lei Z, Huhman D, Sumner LW, Zhao PX. Analytical Chemistry; 87(18):9114-9119.

Date published: September 15, 2015
Featured in this article: Zhentian Lei, Lloyd Sumner.

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Positionally-conserved but sequence-diverged: Identification of long non-coding RNAs in the Brassicaceae and Cleomaceae. Mohammadin S, Edger PP, Pires JC, Schranz ME. BMC Plant Biology; 15(1):217.

Date published: September 11, 2015
Featured in this article: J. Chris Pires.

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Erratum to: P2 receptors in atherosclerosis and postangioplasty restenosis (Purinergic Signalling, (2006), 2, 3, 471-480, DOI 10.1007/s11302-006-9015-1). Seye CI, Kong Q, Yu N, Gonzalez FA, Erb L, Weisman GA. Purinergic Signalling; 11(3):409.

Date published: September 10, 2015
Featured in this article: Cheikh Seye, Gary Weisman.

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Cell wall protection by the Candida albicans class I chitin synthases. Preechasuth K, Anderson JC, Peck SC, Brown AJP, Gow NAR, Lenardon MD. Fungal Genetics and Biology; 82:264-276.

Date published: September 1, 2015
Featured in this article: Scott Peck.

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Molecular basis of neurodegeneration and neurodevelopmental defects in Menkes disease. Zlatic S, Comstra HS, Gokhale A, Petris MJ, Faundez V. Neurobiology of Disease; 81:154-161.

Date published: September 1, 2015
Featured in this article: Michael Petris.

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Effect of lipo-chitooligosaccharide on early growth of C4 grass seedlings. Tanaka K, Cho S-H, Lee H, Pham AQ, Batek JM, Cui S, Qiu J, Khan SM, Joshi T, Zhang ZT, Xu D, Stacey G. Journal of Experimental Botany; 66(19):5727-5738.

Date published: September 1, 2015
Featured in this article: Trupti Joshi, Dong Xu, Gary Stacey.

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Dynamics of virus shedding and antibody responses in influenza A virus-infected feral swine. Sun H, Cunningham FL, Harris J, Xu Y, Long L-P, Hanson-Dorr K, Baroch JA, Fioranelli P, Lutman MW, Li T, Pedersen K, Schmit BS, Cooley J, Lin X, Jarman RG, Deliberto TJ, Wan X-F. Journal of General Virology; 96(9):2569-2578.

Date published: September 1, 2015
Featured in this article: Liping Long, XiuFeng “Henry” Wan.

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Developing tools for the study of molluscan immunity: Thesequencing of the genome of the eastern oyster, Crassostrea virginica. Gómez-Chiarri M, Warren WC, Guo X, Proestou D. Fish and Shellfish Immunology; 46(1):2-4.

Date published: September 1, 2015
Featured in this article: Wes Warren.

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Heritable site-specific mutagenesis using TALENs in maize. Char SN, Unger-Wallace E, Frame B, Briggs SA, Main M, Spalding MH, Vollbrecht E, Wang K, Yang B. Plant Biotechnology Journal; 13(7):1002-1010.

Date published: September 1, 2015
Featured in this article: Bing Yang.

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Metabolite profiles of essential oils in citrus peels and their taxonomic implications. Jing L, Lei Z, Zhang G, Pilon AC, Huhman DV, Xie R, Xi W, Zhou Z, Sumner LW. Metabolomics; 11(4):952-963.

Date published: August 22, 2015
Featured in this article: Zhentian Lei, Lloyd Sumner.

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Third Report on Chicken Genes and Chromosomes 2015. Schmid M, Smith J, Burt DW, Aken BL, Antin PB, Archibald AL, Ashwell C, Blackshear PJ, Boschiero C, Brown CT, Burgess SC, Cheng HH, Chow W, Coble DJ, Cooksey A, Crooijmans RPMA, Damas J, Davis RVN, De Koning D-J, Delany ME, Derrien T, Desta TT, Dunn IC, Dunn M, Ellegren H, Eöry L, Erb I, Farré M, Fasold M, Fleming D, Flicek P, Fowler KE, Frésard L, Froman DP, Garceau V, Gardner PP, Gheyas AA, Griffin DK, Groenen MAM, Haaf T, Hanotte O, Hart A, Häsler J, Hedges SB, Hertel J, Howe K, Hubbard A, Hume DA, Kaiser P, Kedra D, Kemp SJ, Klopp C, Kniel KE, Kuo R, Lagarrigue S, Lamont SJ, Larkin DM, Lawal RA, Markland SM, McCarthy F, McCormack HA, McPherson MC, Motegi A, Muljo SA, Münsterberg A, Nag R, Nanda I, Neuberger M, Nitsche A, Notredame C, Noyes H, O'Connor R, O'Hare EA, Oler AJ, Ommeh SC, Pais H, Persia M, Pitel F, Preeyanon L, Prieto Barja P, Pritchett EM, Rhoads DD, Robinson CM, Romanov MN, Rothschild M, Roux P-F, Schmidt CJ, Schneider A-S, Schwartz MG, Searle SM, Skinner MA, Smith CA, Stadler PF, Steeves TE, Steinlein C, Sun L, Takata M, Ulitsky I, Wang Q, Wang Y, Warren WC, Wood JMD, Wragg D, Zhou H. Cytogenetic and Genome Research; 145(2):78-179.

Date published: August 20, 2015
Featured in this article: Wes Warren.

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Response to Hron et al. Lovell PV, Wirthlin M, Carbone L, Warren WC, Mello CV. Genome Biology; 16(1):165.

Date published: August 18, 2015
Featured in this article: Wes Warren.

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Phylogeny and photosynthesis of the grass tribe Paniceae. Washburn JD, Schnable JC, Davidse G, Pires JC. American Journal of Botany; 102(9):1493-1505.

Date published: August 15, 2015
Featured in this article: J. Chris Pires.

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Soybean transcription factor ORFeome associated with drought resistance: A valuable resource to accelerate research on abiotic stress resistance. Chai C, Wang Y, Joshi T, Valliyodan B, Prince S, Michel L, Xu D, Nguyen HT. BMC Genomics; 16(1):596.

Date published: August 13, 2015
Featured in this article: Trupti Joshi, Dong Xu.

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Joint MiRNA/mRNA expression profiling reveals changes consistent with development of dysfunctional corpus luteum after weight gain. Bradford AP, Jones K, Kechris K, Chosich J, Montague M, Warren WC, May MC, Al-Safi Z, Kuokkanen S, Appt SE, Polotsky AJ. PLoS ONE; 10(8):e0135163.

Date published: August 10, 2015
Featured in this article: Wes Warren.

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Identification of microRNAs and their mRNA targets during soybean nodule development: Functional analysis of the role of miR393j-3p in soybean nodulation. Yan Z, Hossain MS, Arikit S, Valdés-López O, Zhai J, Wang J, Libault M, Ji T, Qiu L, Meyers BC, Stacey G. New Phytologist; 207(3):748-759.

Date published: August 1, 2015
Featured in this article: Gary Stacey.

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A laser ablation ICP-MS based method for multiplexed immunoblot analysis: Applications to manganese-dependent protein dynamics of photosystem II in barley (Hordeum vulgare L.). De Bang TC, Peterson J, Pedas PR, Rogowska-Wrzesinska A, Jensen ON, Schjoerring JK, Jensen PE, Thelen JJ, Husted S. Plant Journal; 83(3):555-565.

Date published: August 1, 2015
Featured in this article: Jay Thelen.

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Error-prone pcr-based mutagenesis strategy for rapidly generating high-yield influenza vaccine candidates. Ye J, Wen F, Xu Y, Zhao N, Long L, Sun H, Yang J, Cooley J, Todd Pharr G, Webby R, Wan X-F. Virology; 482:234-243.

Date published: August 1, 2015
Featured in this article: Liping Long, XiuFeng “Henry” Wan.

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Erratum: Retrophylogenomics Place Tarsiers on the Evolutionary Branch of Anthropoids (Scientific Reports (2015) 3:(1756) 10.1038/srep01756). Hartig G, Churakov G, Warren WC, Brosius J, Makałowski W, Schmitz J. Scientific Reports; 5:12590.

Date published: July 28, 2015
Featured in this article: Wes Warren.

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Construction of an Ultrahigh Pressure Liquid Chromatography-Tandem Mass Spectral Library of Plant Natural Products and Comparative Spectral Analyses. Lei Z, Jing L, Qiu F, Zhang H, Huhman D, Zhou Z, Sumner LW. Analytical Chemistry; 87(14):7373-7381.

Date published: July 21, 2015
Featured in this article: Zhentian Lei, Lloyd Sumner.

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Astrocytes influence the severity of spinal muscular atrophy. Rindt H, Feng Z, Mazzasette C, Glascock JJ, Valdivia D, Pyles N, Crawford TO, Swoboda KJ, Patitucci TN, Ebert AD, Sumner CJ, Ko C-P, Lorson CL. Human Molecular Genetics; 24(14):4094-4102.

Date published: July 15, 2015
Featured in this article: Christian Lorson.

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Resolving deep relationships of PACMAD grasses: a phylogenomic approach. Cotton JL, Wysocki WP, Clark LG, Kelchner SA, Pires JC, Edger PP, Mayfield-Jones D, Duvall MR. BMC Plant Biology; 15:178.

Date published: July 11, 2015
Featured in this article: J. Chris Pires.

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Soybean (Glycine max) SWEET gene family: Insights through comparative genomics, transcriptome profiling and whole genome re-sequence analysis. Patil G, Valliyodan B, Deshmukh R, Prince S, Nicander B, Zhao M, Sonah H, Song L, Lin L, Chaudhary J, Liu Y, Joshi T, Xu D, Nguyen HT. BMC Genomics; 16(1):520.

Date published: July 11, 2015
Featured in this article: Trupti Joshi, Dong Xu.

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The butterfly plant arms-race escalated by gene and genome duplications. Edger PP, Heidel-Fischer HM, Bekaert M, Rota J, Glöckner G, Platts AE, Heckel DG, Der JP, Wafula EK, Tang M, Hofberger JA, Smithson A, Hall JC, Blanchette M, Bureau TE, Wright SI, DePamphilis CW, Schranz ME, Barker MS, Conant GC, Wahlberg N, Vogel H, Pires JC, Wheat CW, Berenbaum MR. Proceedings of the National Academy of Sciences of the United States of America; 112(27):8362-8366.

Date published: July 7, 2015
Featured in this article: J. Chris Pires.

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Biodiversity Comparison among Phylogenetic Diversity Metrics and between Three North American Prairies. Roxanne Kellar P, Ahrendsen DL, Aust SK, Jones AR, Pires JC. Applications in Plant Sciences; 3(7):8.

Date published: July 1, 2015
Featured in this article: J. Chris Pires.

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Phylogenetics, divergence times and diversification from three genomic partitions in monocots. Hertweck KL, Kinney MS, Stuart SA, Maurin O, Mathews S, Chase MW, Gandolfo MA, Pires JC. Bontanical Journal of the Linnean Society; 178(3):375-393.

Date published: July 1, 2015
Featured in this article: J. Chris Pires.

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Physical Mapping and Refinement of the Painted Turtle Genome (Chrysemys picta) Inform Amniote Genome Evolution and Challenge Turtle-Bird Chromosomal Conservation. Badenhorst D, Hillier LW, Literman R, Montiel EE, Radhakrishnan S, Shen Y, Minx P, Janes DE, Warren WC, Edwards SV, Valenzuela N. Genome Biology and Evolution; 7(7):2038-2050.

Date published: July 1, 2015
Featured in this article: Wes Warren.

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Guest Editors Introduction to the Special Issue on Software and Databases. Xu D, Huang K, Schmidt J. IEEE/ACM Transactions on Computational Biology and Bioinformatics; 12(4):793-794.

Date published: July 1, 2015
Featured in this article: Dong Xu.

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Identification of quantitative trait loci underlying resistance to southern root-knot and reniform nematodes in soybean accession PI 567516C. Jiao Y, Vuong TD, Liu Y, Li Z, Noe J, Robbins RT, Joshi T, Xu D, Shannon JG, Nguyen HT. Molecular Breeding; 35(6):131.

Date published: June 26, 2015
Featured in this article: Trupti Joshi, Dong Xu.

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The human epilepsy mutation GABRG2(Q390X) causes chronic subunit accumulation and neurodegeneration. Kang J-Q, Shen W, Zhou C, Xu D, Macdonald RL. Nature Neuroscience; 18(7):988-996.

Date published: June 25, 2015
Featured in this article: Dong Xu.

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Genome-wide expression analysis of soybean NF-Y genes reveals potential function in development and drought response. Quach TN, Nguyen HTM, Valliyodan B, Joshi T, Xu D, Nguyen HT. Molecular Genetics and Genomics; 290(3):1095-1115.

Date published: June 23, 2015
Featured in this article: Trupti Joshi, Dong Xu.

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Sequencing strategies and characterization of 721 vervet monkey genomes for future genetic analyses of medically relevant traits. Huang YS, Ramensky V, Service SK, Jasinska AJ, Jung Y, Choi O-W, Cantor RM, Juretic N, Wasserscheid J, Kaplan JR, Jorgensen MJ, Dyer TD, Dewer K, Blangero J, Wilson RK, Warren W, Weinstock GM, Freimer NB. BMC Biology; 13(1):41.

Date published: June 20, 2015
Featured in this article: Wes Warren.

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Analysis of the siRNA-mediated gene silencing process targeting three homologous genes controlling soybean seed oil quality. Lu S, Yin X, Spollen W, Zhang N, Xu D, Schoelz J, Bilyeu K, Zhang ZJ. PLoS ONE; 10(6):e0129010.

Date published: June 10, 2015
Featured in this article: Dong Xu.

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Does plant immunity play a critical role during initiation of the legume-rhizobium symbiosis?. Tóth K, Stacey G. Frontiers in Plant Science; 6(June):401.

Date published: June 2, 2015
Featured in this article: Gary Stacey.

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Structure-function analysis of NEET proteins uncovers their role as key regulators of iron and ROS homeostasis in health and disease. Tamir S, Paddock ML, Darash-Yahana-Baram M, Holt SH, Sohn YS, Agranat L, Michaeli D, Stofleth JT, Lipper CH, Morcos F, Cabantchik IZ, Onuchic JN, Jennings PA, Mittler R, Nechushtai R. Biochimica et Biophysica Acta - Molecular Cell Research; 1853(6):1294-1315.

Date published: June 1, 2015
Featured in this article: Ron Mittler.

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X-linked spinal muscular atrophy in mice caused by autonomous loss of ATP7A in the motor neuron. Hodgkinson VL, Dale JM, Garcia ML, Weisman GA, Lee J, Gitlin JD, Petris MJ. Journal of Pathology; 236(2):241-250.

Date published: June 1, 2015
Featured in this article: Gary Weisman, Michael Petris.

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Copper tolerance and virulence in bacteria. Ladomersky E, Petris MJ. Metallomics; 7(6):957-964.

Date published: June 1, 2015
Featured in this article: Michael Petris.

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Elucidating steroid alkaloid biosynthesis in Veratrum californicum: Production of verazine in Sf9 cells. Augustin MM, Ruzicka DR, Shukla AK, Augustin JM, Starks CM, O'Neil-Johnson M, McKain MR, Evans BS, Barrett MD, Smithson A, Wong GK-S, Deyholos MK, Edger PP, Pires JC, Leebens-Mack JH, Mann DA, Kutchan TM. Plant Journal; 82(6):991-1003.

Date published: June 1, 2015
Featured in this article: J. Chris Pires.

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System approaches to study root hairs as a single cell plant model: Current status and future perspectives. Hossain MS, Joshi T, Stacey G. Frontiers in Plant Science; 6(MAY):1-7.

Date published: May 19, 2015
Featured in this article: Trupti Joshi, Gary Stacey.

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Investigation of the chemical interface in the soybean-aphid and rice-bacteria interactions using maldi-mass spectrometry imaging. Klien AT, Yagnik GB, Hohenstein JD, Ji Z, Zi J, Reichert MD, Macintosh GC, Yang B, Peters RJ, Vela J, Lee YJ. Analytical Chemistry; 87(10):5294-5301.

Date published: May 19, 2015
Featured in this article: Bing Yang.

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Genome-wide analysis of mutations in a dwarf soybean mutant induced by fast neutron bombardment. Hwang WJ, Kim MY, Kang YJ, Shim S, Stacey MG, Stacey G, Lee S-H. Euphytica; 203(2):399-408.

Date published: May 18, 2015
Featured in this article: Minviluz (Bing) Stacey, Gary Stacey.

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Characterization of Angiogenesis and Lymphangiogenesis in Human Minor Salivary Glands with Sjögren’s Syndrome. McCall AD, Baker OJ. Journal of Histochemistry and Cytochemistry; 63(5):340-349.

Date published: May 5, 2015
Featured in this article: Olga Baker.

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Plastid phylogenomics of the cool-season grass subfamily: Clarification of relationships among early-diverging tribes. Saarela JM, Wysocki WP, Barrett CF, Soreng RJ, Davis JI, Clark LG, Kelchner SA, Pires JC, Edger PP, Mayfield DR, Duvall MR. AoB PLANTS; 7(1).

Date published: May 2, 2015
Featured in this article: J. Chris Pires.

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Increased Expression of TGF-β Signaling Components in a Mouse Model of Fibrosis Induced by Submandibular Gland Duct Ligation. Woods LT, Camden JM, El-Sayed FG, Khalafalla MG, Petris MJ, Erb L, Weisman GA. PLoS ONE; 10(5):e0123641.

Date published: May 1, 2015
Featured in this article: Lucas Woods, Jean Camden, Michael Petris, Gary Weisman.

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Gene targeting by the TAL effector PthXo2 reveals cryptic resistance gene for bacterial blight of rice. Zhou J, Peng Z, Long J, Sosso D, Liu B, Eom J-S, Huang S, Liu S, Vera Cruz C, Frommer WB, White FF, Yang B. Plant Journal; 82(4):632-643.

Date published: May 1, 2015
Featured in this article: Bing Yang.

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Phosphorylation site prediction in plants. Yao Q, Schulze WX, Xu D. Plant Phosphoproteomics: Methods and Protocols; 217-228.

Date published: April 30, 2015
Featured in this article: Dong Xu.

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From gigabyte to kilobyte: A bioinformatics protocol for mining large RNA-Seq transcriptomics data. Li J, Hou J, Sun L, Wilkins JM, Lu Y, Niederhuth CE, Merideth BR, Mawhinney TP, Mossine VV, Greenlief CM, Walker JC, Folk WR, Hannink M, Lubahn DB, Birchler JA, Cheng J. PLoS ONE; 10(4):e0125000.

Date published: April 22, 2015
Featured in this article: Michael Greenlief, Mark Hannink.

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Genetic stability analysis in somatic embryo regeneration of erica carnea by RAPD and ISSR markers. Wang J-N, Li J-H, Qi X, Yao P-J, Xu D. Zhiwu Shengli Xuebao/Plant Physiology Journal; 51(4):448-494.

Date published: April 20, 2015
Featured in this article: Dong Xu.

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The SMN structure reveals its crucial role in snRNP assembly (RETRACTED). Seng CO, Magee C, Young PJ, Lorson CL, Allen JP. Human Molecular Genetics; 24(8):2138-2146.

Date published: April 15, 2015
Featured in this article: Christian Lorson.

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Comparative proteomic analysis of developing rhizomes of the ancient vascular plant equisetum hyemale and different monocot species. Salvato F, Balbuena TS, Nelson W, Rao RSP, He R, Soderlund CA, Gand DR, Thelen JJ. Journal of Proteome Research; 14(4):1779-1791.

Date published: April 3, 2015
Featured in this article: Jay Thelen.

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An association analysis between psychophysical characteristics and genome-wide gene expression changes in human adaptation to the extreme climate at the Antarctic Dome Argus. Xu C, Ju X, Song D, Huang F, Tang D, Zou Z, Zhang C, Joshi T, Jia L, Xu W, Xu K-F, Wang Q, Xiong Y, Guo Z, Chen X, Huang F, Xu J, Zhong Y, Zhu Y, Peng Y, Wang L, Zhang X, Jiang R, Li D, Jiang T, Xu D, Jiang C. Molecular Psychiatry; 20(4):536-544.

Date published: April 2, 2015
Featured in this article: Trupti Joshi, Dong Xu.

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Integrated metabolomics and transcriptomics reveal enhanced specialized metabolism in Medicago truncatula root border cells. Watson BS, Bedair MF, Urbanczyk-Wochniak E, Huhman DV, Yang DS, Allen SN, Li W, Tang Y, Sumner LW. Plant Physiology; 167(4):1699-1716.

Date published: April 1, 2015
Featured in this article: Lloyd Sumner.

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Patterns of metabolite changes identified from large-scale gene perturbations in arabidopsis using a genome-scale metabolic network. Kim T, Dreher K, Nilo-Poyanco R, Lee I, Fiehn O, Lange BM, Nikolau BJ, Sumner L, Welti R, Wurtele ES, Rhee SY. Plant Physiology; 167(4):1685-1698.

Date published: April 1, 2015
Featured in this article: Lloyd Sumner.

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The Fe-S cluster-containing NEET proteins mitoNEET and NAF-1 as chemotherapeutic targets in breast cancer. Bai F, Morcos F, Sohn Y-S, Darash-Yahana M, Rezende CO, Lipper CH, Paddock ML, Song L, Luo Y, Holt SH, Tamir S, Theodorakis EA, Jennings PA, Onuchic JN, Mittler R, Nechushtai R. Proceedings of the National Academy of Sciences of the United States of America; 112(12):3698-3703.

Date published: March 24, 2015
Featured in this article: Ron Mittler.

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Omeprazole, a gastric proton pump inhibitor, inhibits melanogenesis by blocking ATP7A trafficking. Matsui MS, Petris MJ, Niki Y, Karaman-Jurukovska N, Muizzuddin N, Ichihashi M, Yarosh DB. Journal of Investigative Dermatology; 135(3):834-841.

Date published: March 12, 2015
Featured in this article: Michael Petris.

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FASTAptamer: A bioinformatic toolkit for high-throughput sequence analysis of combinatorial selections. Alam KK, Chang JL, Burke DH. Molecular Therapy - Nucleic Acids; 4(3):e230.

Date published: March 1, 2015
Featured in this article: Donald Burke-Agüero.

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Rhizobium-legume symbioses: The crucial role of plant immunity. Gourion B, Berrabah F, Ratet P, Stacey G. Trends in Plant Science; 20(3):186-194.

Date published: March 1, 2015
Featured in this article: Gary Stacey.

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Robust biological nitrogen fixation in a model grass-bacterial association. Pankievicz VCS, Do Amaral FP, Santos KFDN, Agtuca B, Xu Y, Schueller MJ, Arisi ACM, Steffens MBR, De Souza EM, Pedrosa FO, Stacey G, Ferrieri RA. Plant Journal; 81(6):907-919.

Date published: March 1, 2015
Featured in this article: Gary Stacey.

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Identification of the source of A (H10N8) virus causing human infection. Xu Y, Cao H, Liu H, Sun H, Martin B, Zhao Y, Wang Q, Deng G, Xue J, Zong Y, Zhu J, Wen F, Long L-P, Wong S-S, Zhao N, Fu X, Liao M, Hu G, Webby R, Gao GF, Wan X-F. Infection, Genetics and Evolution; 30:159-163.

Date published: March 1, 2015
Featured in this article: Liping Long, XiuFeng “Henry” Wan.

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Genetic variants in root architecture-related genes in a Glycine soja accession, a potential resource to improve cultivated soybean. Prince SJ, Song L, Qiu D, Maldonado dos Santos JV, Chai C, Joshi T, Patil G, Valliyodan B, Vuong TD, Murphy M, Krampis K, Tucker DM, Biyashev R, Dorrance AE, Maroof MAS, Xu D, Shannon JG, Nguyen HT. BMC Genomics; 16(1):132.

Date published: February 25, 2015
Featured in this article: Trupti Joshi, Dong Xu.

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NFIB regulates embryonic development of submandibular glands. Mellas RE, Kim H, Osinski J, Sadibasic S, Gronostajski RM, Cho M, Baker OJ. Journal of Dental Research; 94(2):312-319.

Date published: February 22, 2015
Featured in this article: Olga Baker.

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The Mitochondrial Metallochaperone SCO1 Is Required to Sustain Expression of the High-Affinity Copper Transporter CTR1 and Preserve Copper Homeostasis. Hlynialuk CJ, Ling B, Baker ZN, Cobine PA, Yu LD, Boulet A, Wai T, Hossain A, ElZawily AM, McFie PJ, Stone SJ, Diaz F, Moraes CT, Viswanathan D, Petris MJ, Leary SC. Cell Reports; 10(6):933-943.

Date published: February 17, 2015
Featured in this article: Michael Petris.

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XA23 Is an executor r protein and confers broad-spectrum disease resistance in rice. Wang C, Zhang X, Fan Y, Gao Y, Zhu Q, Zheng C, Qin T, Li Y, Che J, Zhang M, Yang B, Liu Y, Zhao K. Molecular Plant; 8(2):290-302.

Date published: February 2, 2015
Featured in this article: Bing Yang.

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Modern plant metabolomics: Advanced natural product gene discoveries, improved technologies, and future prospects. Sumner LW, Lei Z, Nikolau BJ, Saito K. Natural Product Reports; 32(2):212-229.

Date published: February 1, 2015
Featured in this article: Lloyd Sumner, Zhentian Lei.

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Detection of influenza antigenic variants directly from clinical samples using polyclonal antibody based proximity ligation assays. Martin BE, Jia K, Sun H, Ye J, Hall C, Ware D, Wan X-F. Virology; 476:151-158.

Date published: February 1, 2015
Featured in this article: XiuFeng “Henry” Wan.

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Zonula Occludens-1, Occludin and E-cadherin Expression and Organization in Salivary Glands with Sjögren’s Syndrome. Mellas RE, Leigh NJ, Nelson JW, McCall AD, Baker OJ. Journal of Histochemistry and Cytochemistry; 63(1):45-56.

Date published: January 30, 2015
Featured in this article: Olga Baker.

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Development of an isoform-specific tandem mass spectrometry assay for absolute quantitation of maize lipid transfer proteins. Stevenson SE, McClain S, Thelen JJ. Journal of Agricultural and Food Chemistry; 63(3):821-828.

Date published: January 28, 2015
Featured in this article: Jay Thelen.

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The SCAR/WAVE complex polarizes PAN receptors and promotes division asymmetry in maize. Facette MR, Park Y, Sutimantanapi D, Luo A, Cartwright HN, Yang B, Bennett EJ, Sylvester AW, Smith LG. Nature Plants; 1:14024.

Date published: January 26, 2015
Featured in this article: Bing Yang.

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The roles of ROS and ABA in systemic acquired acclimation. Mittler R, Blumwald E. Plant Cell; 27(1):64-70.

Date published: January 20, 2015
Featured in this article: Ron Mittler.

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Identification and evaluation of quantitative trait loci underlying resistance to multiple HG types of soybean cyst nematode in soybean PI 437655. Jiao Y, Vuong TD, Liu Y, Meinhardt C, Liu Y, Joshi T, Cregan PB, Xu D, Shannon JG, Nguyen HT. Theoretical and Applied Genetics; 128(1):15-23.

Date published: January 17, 2015
Featured in this article: Trupti Joshi, Dong Xu.

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Gene therapy in spinal muscular atrophy (SMA) models using intracerebroventricular injection into neonatal mice. Shababi M, Osman EY, Lorson CL. Neuromethods; 98:297-320.

Date published: January 13, 2015
Featured in this article: Christian Lorson.

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CODAS syndrome is associated with mutations of LONP1, encoding mitochondrial AAA+ lon protease. Strauss KA, Jinks RN, Puffenberger EG, Venkatesh S, Singh K, Cheng I, Mikita N, Thilagavathi J, Lee J, Sarafianos S, Benkert A, Koehler A. American Journal of Human Genetics; 96(1):121-135.

Date published: January 8, 2015
Featured in this article: Kamlendra Singh.

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The application of synthetic biology to elucidation of plant mono-, sesqui-, and diterpenoid metabolism. Kitaoka N, Lu X, Yang B, Peters RJ. Molecular Plant; 8(1):6-16.

Date published: January 5, 2015
Featured in this article: Bing Yang.

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Preface. Chen S-J, Burke-Agüero DH. Methods in Enzymology; 553:xv-xvii.

Date published: January 1, 2015
Featured in this article: Donald Burke-Agüero.

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Preface. Burke-Aguero DH. Methods in Enzymology; 550:xv-xix.

Date published: January 1, 2015
Featured in this article: Donald Burke-Agüero.

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Unreduced gametes: Meiotic mishap or evolutionary mechanism?. Mason AS, Pires JC. Trends in Genetics; 31(1):5-10.

Date published: January 1, 2015
Featured in this article: J. Chris Pires.

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Multifunctionality of a picornavirus polymerase domain: Nuclear localization signal and nucleotide recognition. Ferrer-Octa C, De La Higuera I, Caridi F, Sánchez-Aparicio MT, Moreno E, Perales C, Singh K, Sarafianos SG, Sobrino F, Domingo E, Verdaguer N. Journal of Virology; 89(13):6848-6859.

Date published: January 1, 2015
Featured in this article: Kamlendra Singh.

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Structural basis of clade-specific HIV-1 neutralization by humanized anti-V3 monoclonal antibody KD-247. Kirby KA, Ong YT, Hachiya A, Laughlin TG, Chiang LA, Pan Y, Moran JL, Marchand B, Singh K, Gallazzi F, Quinn TP, Yoshimura K, Murakami T, Matsushita S, Sarafianos SG. FASEB Journal; 29(1):70-80.

Date published: January 1, 2015
Featured in this article: Kamlendra Singh.

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Phytic acid and inorganic phosphate composition in soybean lines with independent IPK1 mutations. Vincent JA, Stacey M, Stacey G, Bilyeu KD. Plant Genome; 8(1).

Date published: January 1, 2015
Featured in this article: Minviluz (Bing) Stacey, Gary Stacey.

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DNA microarray-based identification of genes regulated by NtrC in Bradyrhizobium japonicum. Franck WL, Qiu J, Lee H-I, Chang W-S, Stacey G. Applied and Environmental Microbiology; 81(16):5299-5308.

Date published: January 1, 2015
Featured in this article: Gary Stacey.

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Role of Ectoapyrases in Nodulation. Tanaka K, Tóth K, Stacey G. Biological Nitrogen Fixation; 2-2:517-524.

Date published: January 1, 2015
Featured in this article: Gary Stacey.

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Convergent signaling pathways—interaction between methionine oxidation and serine/threonine/tyrosine O-phosphorylation. Rao RSP, Møller IM, Thelen JJ, Miernyk JA. Cell Stress and Chaperones; 20(1):15-21.

Date published: January 1, 2015
Featured in this article: Jay Thelen.

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Proteomic analysis of Mycoplasma gallisepticum vaccine strain F. Collier SD, Branton SL, Evans JD, Leigh SA, Wan X-F, Cooksey AM, Olanrewaju HA, Pharr GT. International Journal of Poultry Science; 14(1):1-12.

Date published: January 1, 2015
Featured in this article: XiuFeng “Henry” Wan.

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P2Y receptors in Alzheimer’s disease. Erb L, Cao C, Ajit D, Weisman GA. Biology of the Cell; 107(1):1-21.

Date published: January 1, 2015
Featured in this article: Gary Weisman.

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Beneficial effects of dietary EGCG and voluntary exercise on behavior in an Alzheimer’s disease mouse model. Walker JM, Klakotskaia D, Ajit D, Weisman GA, Wood WG, Sun GY, Serfozo P, Simonyi A, Schachtman TR. Journal of Alzheimer's Disease; 44(2):561-572.

Date published: January 1, 2015
Featured in this article: Gary Weisman.

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PRIMEGENSw3: A web-based tool for high-throughput primer and probe design. Kushwaha G, Srivastava GP, Xu D. Methods in Molecular Biology; 1275:181-199.

Date published: January 1, 2015
Featured in this article: Dong Xu.

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Databases for plant phosphoproteomics. Schulze WX, Yao Q, Xu D. Methods in Molecular Biology; 1306:207-216.

Date published: January 1, 2015
Featured in this article: Dong Xu.

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Phosphorylation site prediction in plants. Yao Q, Schulze WX, Xu X. Methods in Molecular Biology; 1306:217-228.

Date published: January 1, 2015
Featured in this article: Dong Xu.

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A quick guide to CRISPR sgRNA design tools. Brazelton VA Jr, Zarecor S, Wright DA, Wang Y, Liu J, Chen K, Yang B, Lawrence-Dill CJ. GM crops & food; 6(4):266-276.

Date published: January 1, 2015
Featured in this article: Bing Yang.

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2014

A modified data normalization method for GC-MS-based metabolomics to minimize batch variation. Chen M, Rao RSP, Zhang Y, Zhong CX, Thelen JJ. SpringerPlus; 3(1):439.

Date published: December 30, 2014
Featured in this article: Jay Thelen.

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Advances in translational bioinformatics facilitate revealing the landscape of complex disease mechanisms. Yang JY, Dunker AK, Liu JS, Qin X, Arabnia HR, Yang W, Niemierko A, Chen Z, Luo Z, Wang L, Liu Y, Xu D, Deng Y, Tong W, Yang MQ. BMC Bioinformatics; 15(17):I1.

Date published: December 16, 2014
Featured in this article: Dong Xu.

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Identification of genes and pathways involved in kidney renal clear cell carcinoma. Yang W, Yoshigoe K, Qin X, Liu JS, Yang JY, Niemierko A, Deng Y, Liu Y, Dunker AK, Chen Z, Wang L, Xu D, Arabnia HR, Tong W, Yang MQ. BMC Bioinformatics; 15(17):S2.

Date published: December 16, 2014
Featured in this article: Dong Xu.

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Comparative genomics reveals insights into avian genome evolution and adaptation. Zhang G, Li C, Li Q, Li B, Larkin DM, Lee C, Storz JF, Antunes A, Greenwold MJ, Meredith RW, Ödeen A, Cui J, Zhou Q, Xu L, Pan H, Wang Z, Jin L, Zhang P, Hu H, Yang W, Hu J, Xiao J, Yang Z, Liu Y, Xie Q, Yu H, Lian J, Wen P, Zhang F, Li H, Zeng Y, Xiong Z, Liu S, Zhou L, Huang Z, An N, Wang J, Zheng Q, Xiong Y, Wang G, Wang B, Wang J, Fan Y, Da Fonseca RR, Alfaro-Núñez A, Schubert M, Orlando L, Mourier T, Howard JT, Ganapathy G, Pfenning A, Whitney O, Rivas MV, Hara E, Smith J, Farré M, Narayan J, Slavov G, Romanov MN, Borges R, Machado JP, Khan I, Springer MS, Gatesy J, Hoffmann FG, Opazo JC, Håstad O, Sawyer RH, Kim H, Kim K-W, Kim HJ, Cho S, Li N, Huang Y, Bruford MW, Zhan X, Dixon A, Bertelsen MF, Derryberry E, Warren W, Wilson RK, Li S, Ray DA, Green RE, O'Brien SJ, Griffin D, Johnson WE, Haussler D, Ryder OA, Willerslev E, Graves GR, Alström P, Fjeldså J, Mindell DP, Edwards SV, Braun EL, Rahbek C, Burt DW, Houde P, Zhang Y, Yang H, Wang J, Jarvis ED, Gilbert MTP, Wang J, Ye C, Liang S, Yan Z, Zepeda ML, Campos PF, Velazquez AMV, Samaniego JA, Avila-Arcos M, Martin MD, Barnett R, Ribeiro AM, Mello CV, Lovell PV, Almeida D, Maldonado E, Pereira J, Sunagar K, Philip S, Dominguez-Bello MG, Bunce M, Lambert D, Brumfield RT, Sheldon FH, Holmes EC, Gardner PP, Steeves TE, Stadler PF, Burge SW, Lyons E, Smith J, McCarthy F, Pitel F, Rhoads D, Froman DP. Science; 346(6215):1311-1320.

Date published: December 12, 2014
Featured in this article: Wes Warren.

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Whole-genome analyses resolve early branches in the tree of life of modern birds. Jarvis ED, Mirarab S, Aberer AJ, Li B, Houde P, Li C, Ho SYW, Faircloth BC, Nabholz B, Howard JT, Suh A, Weber CC, Da Fonseca RR, Li J, Zhang F, Li H, Zhou L, Narula N, Liu L, Ganapathy G, Boussau B, Bayzid MS, Zavidovych V, Subramanian S, Gabaldón T, Capella-Gutiérrez S, Huerta-Cepas J, Rekepalli B, Munch K, Schierup M, Lindow B, Warren WC, Ray D, Green RE, Bruford MW, Zhan X, Dixon A, Li S, Li N, Huang Y, Derryberry EP, Bertelsen MF, Sheldon FH, Brumfield RT, Mello CV, Lovell PV, Wirthlin M, Schneider MPC, Prosdocimi F, Samaniego JA, Velazquez AMV, Alfaro-Núñez A, Campos PF, Petersen B, Sicheritz-Ponten T, Pas A, Bailey T, Scofield P, Bunce M, Lambert DM, Zhou Q, Perelman P, Driskell AC, Shapiro B, Xiong Z, Zeng Y, Liu S, Li Z, Liu B, Wu K, Xiao J, Yinqi X, Zheng Q, Zhang Y, Yang H, Wang J, Smeds L, Rheindt FE, Braun M, Fjeldsa J, Orlando L, Barker FK, Jønsson KA, Johnson W, Koepfli K-P, O'Brien S, Haussler D, Ryder OA, Rahbek C, Willerslev E, Graves GR, Glenn TC, McCormack J, Burt D, Ellegren H, Alström P, Edwards SV, Stamatakis A, Mindell DP, Cracaft J, Braun EL, Warnow T, Jun W, Gilbert MTP, Zhang G. Science; 346(6215):1320-1331.

Date published: December 12, 2014
Featured in this article: Wes Warren.

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Comparative analysis of the domestic cat genome reveals genetic signatures underlying feline biology and domestication. Montague MJ, Li G, Golfi B, Khan R, Aken BL, Searle SMJ, Minx P, Hillier LW, Koboldt DC, Davis BW, Driscoll CA, Barr CS, Blackistone K, Quilez J, Lorente-Galdos B, Marques-Bonet T, Alkan C, Thomas GWC, Hahn MW, Menotti-Raymond M, O'Brien SJ, Wilson RK, Lyons LA, Murphy WJ, Warren WC. Proceedings of the National Academy of Sciences of the United States of America; 111(48):17230-17235.

Date published: December 2, 2014
Featured in this article: Wes Warren.

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Investigating the path of plastid genome degradation in an early-transitional clade of heterotrophic orchids, and implications for heterotrophic angiosperms. Barrett CF, Freudenstein JV, Li J, Mayfield-Jones DR, Perez L, Pires JC, Santos C. Molecular Biology and Evolution; 31(12):3095-3112.

Date published: December 1, 2014
Featured in this article: J. Chris Pires.

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Origin of a novel regulatory module by duplication and degeneration of an ancient plant transcription factor. Floyd SK, Ryan JG, Conway SJ, Brenner E, Burris KP, Burris JN, Chen T, Edger PP, Graham SW, Leebens-Mack JH, Pires JC, Rothfels CJ, Sigel EM, Stevenson DW, Neal Stewart C, Wong GKS, Bowman JL. Molecular Phylogenetics and Evolution; 81:159-173.

Date published: December 1, 2014
Featured in this article: J. Chris Pires.

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Single haplotype assembly of the human genome from a hydatidiform mole. Steinberg KM, Schneider VA, Graves-Lindsay TA, Fulton RS, Agarwala R, Huddleston J, Shiryev SA, Morgulis A, Surti U, Warren WC, Church DM, Eichler EE, Wilson RK. Genome Research; 24(12):2066-2076.

Date published: December 1, 2014
Featured in this article: Wes Warren.

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Extensive Error in the Number of Genes Inferred from Draft Genome Assemblies. Denton JF, Lugo-Martinez J, Tucker AE, Schrider DR, Warren WC, Hahn MW. PLoS Computational Biology; 10(12).

Date published: December 1, 2014
Featured in this article: Wes Warren.

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A new Hidden Markov Model for protein quality assessment using compatibility between protein sequence and structure. He Z, Ma W, Zhang J, Xu D. Tsinghua Science and Technology; 19(6):559-567.

Date published: December 1, 2014
Featured in this article: Dong Xu.

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Proteomic analysis of the effects of aged garlic extract and its FruArg component on lipopolysaccharide-induced neuroinflammatory response in microglial cells. Zhou H, Qu Z, Mossine VV, Nknolise DL, Li J, Chen Z, Cheng J, Greenlief CM, Mawhinney TP, Brown PN, Fritsche KL, Hannink M, Lubahn DB, Sun GY, Gu Z. PLoS ONE; 9(11):e113531.

Date published: November 24, 2014
Featured in this article: Michael Greenlief, Mark Hannink.

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Nonadditive gene expression in polyploids. Yoo M-J, Liu X, Pires JC, Soltis PS, Soltis DE. Annual Review of Genetics; 48:485-517.

Date published: November 23, 2014
Featured in this article: J. Chris Pires.

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Transcriptional responses of Arabidopsis thaliana to chewing and sucking insect herbivores. Appel HM, Fescemyer H, Ehlting J, Weston D, Rehrig E, Joshi T, Xu D, Bohlmann J, Schultz J. Frontiers in Plant Science; 5(November):1-20.

Date published: November 14, 2014
Featured in this article: Trupti Joshi, Dong Xu.

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Sequencing the mouse y chromosome reveals convergent gene acquisition and amplification on both sex chromosomes. Soh YQS, Alföldi J, Pyntikova T, Brown LG, Graves T, Minx PJ, Fulton RS, Kremitzki C, Koutseva N, Mueller JL, Rozen S, Hughes JF, Owens E, Womack JE, Murphy WJ, Cao Q, De Jong P, Warren WC, Wilson RK, Skaletsky H, Page DC. Cell; 159(4):800-813.

Date published: November 6, 2014
Featured in this article: Wes Warren.

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Comparative analysis of 11 Brassicales mitochondrial genomes and the mitochondrial transcriptome of Brassica oleracea. Grewe F, Edger PP, Keren I, Sultan L, Pires JC, Ostersetzer-Biran O, Mower JP. Mitochondrion; 19(PB):135-143.

Date published: November 1, 2014
Featured in this article: J. Chris Pires.

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Extracellular ATP, a danger signal, is recognized by DORN1 in Arabidopsis. Choi J, Tanaka K, Liang Y, Cao Y, Lee SY, Stacey G. Biochemical Journal; 463(3):429-437.

Date published: November 1, 2014
Featured in this article: Gary Stacey.

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Global reprogramming of transcription and metabolism in Medicago truncatula during progressive drought and after rewatering. Zhang J-Y, Cruz De Carvalho MH, Torres-Jerez I, Kang Y, Allen SN, Huhman DV, Tang Y, Murray J, Sumner LW, Udvardi MK. Plant, Cell and Environment; 37(11):2553-2576.

Date published: November 1, 2014
Featured in this article: Lloyd Sumner.

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Variation in protection of four divergent avian influenza virus vaccine seed strains against eight clade 2.2.1 and 2.2.1.1. Egyptian H5N1 high pathogenicity variants in poultry. Spackman E, Swayne DE, Pantin-Jackwood MJ, Wan X-F, Torchetti MK, Hassan M, Suarez DL, Sá e Silva M. Influenza and other Respiratory Viruses; 8(6):654-662.

Date published: November 1, 2014
Featured in this article: XiuFeng “Henry” Wan.

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RNA-protein distance patterns in ribosomes reveal the mechanism of translational attenuation. Yu DM, Zhang C, Qin PW, Cornish PV, Xu D. Science China Life Sciences; 57(11):1131-1139.

Date published: November 1, 2014
Featured in this article: Dong Xu.

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Proposed quantitative and alphanumeric metabolite identification metrics. Sumner LW, Lei Z, Nikolau BJ, Saito K, Roessner U, Trengove R. Metabolomics; 10(6):1047-1049.

Date published: October 30, 2014
Featured in this article: Lloyd Sumner, Zhentian Lei.

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The cavefish genome reveals candidate genes for eye loss. McGaugh SE, Gross JB, Aken B, Blin M, Borowsky R, Chalopin D, Hinaux H, Jeffery WR, Keene A, Ma L, Minx P, Murphy D, O'Quin KE, Rétaux S, Rohner N, Searle SMJ. Stahl BA, Tabin C, Volff J-N, Yoshizawa M, Warren WC. Nature Communications; 5:5307.

Date published: October 20, 2014
Featured in this article: Wes Warren.

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Functions of EDS1-like and PAD4 genes in grapevine defenses against powdery mildew. Gao F, Dai R, Pike SM, Qiu W, Gassmann W. Plant Molecular Biology; 86(4-5):381-393.

Date published: October 10, 2014
Featured in this article: Sharon Pike, Walter Gassmann.

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Carbonic anhydrases, EPF2 and a novel protease mediate CO2 control of stomatal development. Engineer CB, Ghassemian M, Anderson JC, Peck SC, Hu H, Schroeder JI. Nature; 513(7517):246-250.

Date published: October 2, 2014
Featured in this article: Scott Peck.

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Corrigendum: Mammalian Y chromosomes retain widely expressed dosage-sensitive regulators. Bellott DW, Hughes JF, Skaletsky H, Brown LG, Pyntikova T, Cho T-J, Koutseva N, Zaghlul S, Graves T, Rock S, Kremitzki C, Fulton RS, Dugan S, Ding Y, Morton D, Khan Z, Lewis L, Buhay C, Wang Q, Watt J, Holder M, Lee S, Nazareth L, Rozen S, Muzny DM, Warren WC, Gibbs RA, Wilson RK, Page DC. Nature; 514(7520):126.

Date published: October 2, 2014
Featured in this article: Wes Warren.

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A tidal wave of signals: Calcium and ROS at the forefront of rapid systemic signaling. Gilroy S, Suzuki N, Miller G, Choi W-G, Toyota M, Devireddy AR, Mittler R. Trends in Plant Science; 19(10):623-630.

Date published: October 1, 2014
Featured in this article: Ron Mittler.

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Interview with Ron Mittler. Mittler R. Trends in Plant Science; 19(10):611-612.

Date published: October 1, 2014
Featured in this article: Ron Mittler.

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Interfacing Whispering Gallery Mode optical microresonator biosensors with the plant defense elicitor chitin. Dahmen JL, Yang Y, Greenlief CM, Stacey G, Hunt HK. Colloids and Surfaces B: Biointerfaces; 122:241-249.

Date published: October 1, 2014
Featured in this article: Michael Greenlief, Gary Stacey.

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Use of serological and mucosal immune responses to Mycoplasma hyopneumoniae antigens P97R1, P46 and P36 in the diagnosis of infection. Feng Z-X, Bai Y, Yao J-T, Pharr GT, Wan X-F, Xiao S-B, Chi L-Z, Gan Y, Wang H-Y, Wei Y-N, Liu M-J, Xiong Q-Y, Bai F-F, Li B, Wu X-S, Shao G-Q. Veterinary Journal; 202(1):128-133.

Date published: October 1, 2014
Featured in this article: XiuFeng “Henry” Wan.

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Flower-visiting insects and their potential impact on transgene flow in rice. Pu D-Q, Shi M, Wu Q, Gao M-Q, Liu J-F, Ren S-P, Yang F, Tang P, Ye G-Y, Shen Z-C, He J-H, Yang D, Bu W-J, Zhang C-T, Song Q, Xu D, Strand MR, Chen X-X. Journal of Applied Ecology; 51(5):1357-1365.

Date published: October 1, 2014
Featured in this article: Dong Xu.

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Drug resistance in non-B subtype HIV-1: Impact of HIV-1 reverse transcriptase inhibitors. Singh K, Flores JA, Kirby KA, Neogi U, Sonnerborg A, Hachiya A, Das K, Arnold E, McArthur C, Parniak M, Sarafianos SG. Viruses; 6(9):3535-3562.

Date published: September 24, 2014
Featured in this article: Kamlendra Singh.

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Corrigendum: Elephant shark genome provides unique insights into gnathostome evolution. Venkatesh B, Lee AP, Ravi V, Maurya AK, Lian MM, Swann JB, Ohta Y, Flajnik MF, Sutoh Y, Kasahara M, Hoon S, Gangu V, Roy SW, Irimia M, Korzh V, Kondrychyn I, Lim ZW, Tay B-H, Tohari S, Kong KW, Ho S, Lorente-Galdos B, Quilez J, Marques-Bonet T, Raney BJ, Ingham PW, Tay A, Hillier LW, Minx P, Boehm T, Wilson RK, Brenner S, Warren WC. Nature; 513(7519):574.

Date published: September 24, 2014
Featured in this article: Wes Warren.

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Differentiating enteric Escherichia coli from environmental bacteria through the putative glucosyltransferase gene (ycjM). Deng D, Zhang L, Mustapha A, Xu D, Wuliji T, Farley M, Yang J, Hua B, Liu F, Zheng G. Water Research; 61:224-231.

Date published: September 15, 2014
Featured in this article: Dong Xu.

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Erratum: Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome (Science (2014) 345:6199 (950-953)). Chalhoub B, Denoeud F, Liu S, Parkin IAP, Tang H, Wang X, Chiquet J, Belcram H, Tong C, Samans B, Corréa M, Da Silva C, Just J, Falentin C, Koh CS, Le Clainche I, Bernard M, Bento P, Noel B, Labadie K, Alberti A, Charles M, Arnaud D, Guo H, Daviaud C, Alamery S, Jabbari K, Zhao M, Edger PP, Chelaifa H, Tack D, Lassalle G, Mestiri I, Schnel N, Le Paslier M-C, Fan G, Renault V, Bayer PE, Golicz AA, Manoli S, Lee T-H, Thi VHD, Chalabi S, Hu Q, Fan C, Tollenaere R, Lu Y, Battail C, Shen J, Sidebottom CHD, Wang X, Canaguier A, Chauveau A, Bérard A, Deniot G, Guan M, Liu Z, Sun F, Lim YP, Lyons E, Town CD, Bancroft I, Wang X, Meng J, Ma, J, Pires JC, King GJ, Brunel D, Delourme R, Renard M, Aury J-M, Adams KL, Batley J, Snowdon RJ, Tost J, Edwards D, Zhou Y, Hua W, Sharpe AG, Paterson AH, Guan C, Wincker P. Science; 345(6202).

Date published: September 12, 2014
Featured in this article: J. Chris Pires.

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Gibbon genome and the fast karyotype evolution of small apes. Carbone L, Alan Harris R, Gnerre S, Verramah KR, Lorente-Galdos B, Huddleston J, Meyer TJ, Herrero J, Roos C, Aken B, Anaclerio F, Archidiacono N, Baker C, Barrell D, Batzer MA, Beal K, Blancher A, Bohrson CL, Brameier M, Campbell MS, Capozzi O, Casola C, Chiatante G, Cree A, Damert A, De Jong PJ, Dumas L, Fernandez-Callejo M, Flicek P, Fuchs NV, Gut I, Gut M, Hahn MW, Hernandez-Rodriguez J, Hillier LW, Hubley R, Ianc B, Izsvák Z, Jablonski NG, Johnstone LM, Karimpour-Fard A, Konkel MK, Kostka D, Lazar NH, Lee SL, Lewis LR, Liu Y, Locke DP, Mallick S, Mendez FL, Muffato M, Nazareth LV, Nevonen KA, O'Bleness M, Ochis C, Odom DT, Pollard KS, Quilez J, Reich D, Rocchi M, Schumann GG, Searle S, Sikela JM, Skollar G, Smit A, Sonmez K, Ten Hallers B, Terhune E, Thomas GWC, Ullmer B, Ventura M, Walker JA, Wall JD, Walter L, Ward MC, Wheelan SJ, Whelan CW, White S, Wilhelm LJ, Woerner AE, Yandell M, Zhu B, Hammer MF, Marques-Bonet T, Eichler EE, Fulton L, Fronick C, Muzny DM, Warren WC, Worley KC, Rogers J, Wilson RK, Gibbs RA. Nature; 513(7517):195-201.

Date published: September 11, 2014
Featured in this article: Wes Warren.

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A conserved motif mediates both multimer formation and allosteric activation of phosphoglycerate mutase 5. Wilkins JM, McConnell C, Tipton PA, Hannink M. Journal of Biological Chemistry; 289(36):25137-25148.

Date published: September 5, 2014
Featured in this article: Mark Hannink.

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Sequence-based antigenic change prediction by a sparse learning method incorporating co-evolutionary information. Yang J, Zhang T, Wan X-F. PLoS ONE; 9(9):e106660.

Date published: September 4, 2014
Featured in this article: XiuFeng “Henry” Wan.

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Extracellular ATP acts as a damage-associated molecular pattern (DAMP) signal in plants. Tanaka K, Choi J, Cao Y, Stacey G. Frontiers in Plant Science; 5(SEP):446.

Date published: September 3, 2014
Featured in this article: Gary Stacey.

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TIM-family proteins inhibit HIV-1 release. Li M, Ablan SD, Miao C, Zheng Y-M, Fuller MS, Rennert PD, Maury W, Johnson MC, Freed EO, Liu S-L. Proceedings of the National Academy of Sciences of the United States of America; 111(35):E3699-E3707.

Date published: September 2, 2014
Featured in this article: Marc Johnson.

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Morpholino antisense oligonucleotides targeting intronic repressor Element1 improve phenotype in SMA mouse models. Osman EY, Miller MR, Robbins KL, Lombardi AM, Atkinson AK, Brehm AJ, Lorson CL. Human Molecular Genetics; 23(18):4832-4845.

Date published: September 1, 2014
Featured in this article: Christian Lorson.