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Jay J. Thelen

Jay J. Thelen

Professor of Biochemistry

Phone: 573-884-1325
thelenj@missouri.edu
271g Life Sciences Center

Jay Thelen, a plant biochemist, works on several research projects that employ analytical approaches to quantitatively study protein and metabolic regulation in model and crop seeds.  His research interests include metabolic regulation, seed development, plant biochemistry, and analytical proteomics.  These areas of study have the potential for broad impact on both agriculture and human health. Using cutting-edge mass spectrometry instrumentation, Thelen has conducted research on the factors that affect the composition of seeds, to determine why certain nuts and seeds contain higher percentages of oil than others. His lab monitors protein expression and modification, knowledge that may be used to improve crop plants such as canola and soybean. His latest collaborative project will develop lasers to non-invasively break down indigestible proteins in peanuts and other legumes, rendering them less allergenic. He also developed and patented a method to accurately quantify seed allergens in a high-throughput, multiplexed manner; a priority for seed biotechnology and food industries.

 

News about Jay J. Thelen

2022

Identification of Arabidopsis Protein Kinases That Harbor Functional Type 1 Peroxisomal Targeting Signals. Kataya A, Gautam N, Jamshed M, Muench D, Samuel M, Thelen J, Moorhead G. Frontiers in Cell and Developmental Biology; Volume 10.

Date published: February 15, 2022
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Integrative proteomics and phosphoproteomics reveals phosphorylation networks involved in the maintenance and expression of embryogenic competence in sugarcane callus. Xavier L.R., Almeida F.A. , Pinto V.B., Passamani L.Z., Santa-Catarina C., de Souza Filho G.A., Mooney B.P., Thelen J.J., Silveira V.. Journal of Plant Physiology; Volume 268.

Date published: January 1, 2022
Featured in this article: Brian Mooney, Jay Thelen.

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Overexpression of pea α-carboxyltransferase in Arabidopsis and camelina increases fatty acid synthesis leading to improved seed oil content. Wang M, Garneau M, Poudel A, Lamm D, Koo A, Bates P, Thelen J. Plant Journal; .

Date published: January 1, 2022
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2021

S-acylation of P2K1 mediates extracellular ATP-induced immune signaling in Arabidopsis. Chen D, Hao F, Mu H, Ahsan N, Thelen JJ, Stacey G. Nature Communications; 12(1):2750.

Date published: December 1, 2021
Featured in this article: Jay Thelen, Gary Stacey.

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2020

Light spectra affect the in vitro shoot development of Cedrela fissilis Vell. (Meliaceae) by changing the protein profile and polyamine contents. Oliveira TDR, Aragão VPM, Moharana KC, Fedosejevs E, do Amaral FP, Sousa KR, Thelen JJ, Venâncio TM, Silveira V, Santa-Catarina C. Biochimica et Biophysica Acta - Proteins and Proteomics; 1868(12):140529.

Date published: December 1, 2020
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Docking of acetyl-CoA carboxylase to the plastid envelope membrane attenuates fatty acid production in plants. Ye Y, Nikovics K, To A, Lepiniec L, Fedosejevs ET, Van Doren SR, Baud S, Thelen JJ. Nature Communications; 11(1):6191.

Date published: December 1, 2020
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Label-Free Quantitative Phosphoproteomics Reveals Signaling Dynamics Involved in Embryogenic Competence Acquisition in Sugarcane. Almeida FA, Passamani LZ, Santa-Catarina C, Mooney BP, Thelen JJ, Silveira V. Journal of Proteome Research; 19(10):4145-4157.

Date published: October 2, 2020
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Proteomic and bioinformatic profiling of transporters in higher plant mitochondria. Møller IM, Shyama Prasad Rao R, Jiang Y, Thelen JJ, Xu D. Biomolecules; 10(8):1-13.

Date published: August 1, 2020
Featured in this article: Jay Thelen, Dong Xu.

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The BADC and BCCP subunits of chloroplast acetyl-CoA carboxylase sense the pH changes of the light-dark cycle. Ye Y, Fulcher YG, Sliman DJ, Day MT, Schroeder MJ, Koppisetti RK, Bates PD, Thelen JJ, van Doren SR. Journal of Biological Chemistry; 295(29):9901-9916.

Date published: July 17, 2020
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Current status of the multinational Arabidopsis community. Parry G, Provart NJ, Brady SM, Uzilday B, Adams K, Araújo W, Aubourg S, Baginsky S, Bakker E, Bärenfaller K, Batley J, Beale M, Beilstein M, Belkhadir Y, Mendel G, Berardini T, Bergelson J, Blanco-Herrera F, Brady S, Braun H-P, Briggs S, Brownfield L, Cardarelli M, Castellanos-Uribe M, Coruzzi G, Dassanayake M, De Jaeger G, Dilkes B, Doherty C, Ecker J, Edger P, Edwards D, El Kasmi F, Eriksson M, Exposito-Alonso M, Falter-Braun P, Fernie A, Ferro M, Fiehn O, Friesner J, Greenham K, Guo Y, Hamann T, Hancock A, Hauser M-T, Heazlewood J, Ho C-H, Hõrak H, Huala E, Hwang I, Iuchi S, Jaiswal P, Jakobson L, Jiang Y, Jiao Y, Jones A, Kadota Y, Khurana J, Kliebenstein D, Knee E, Kobayashi M, Koch M, Krouk G, Larson T, Last R, Lepiniec L, Li S, Lurin C, Lysak M, Maere S, Malinowski R, Maumus F, May S, Mayer K, Mendoza-Cozatl D, Mendoza-Poudereux I, Micol JL, Millar H, Mock H-P, Mukhtar K, Mukhtar S, Murcha M, Nakagami H, Nakamura Y, Nicolov L, Nikolau B, Nowack M, Nunes-Nesi A, Palmgren M, Parry G, Patron N, Peck S, Pedmale U, Perrot-Rechenmann C, Pieruschka R, Pío-Beltrán J, Pires JC, Provart N, Rajjou L, Reiser L, Rhee S, Rigas S, Rolland N, Romanowski A, Savaldi-Goldstein S, Schmitz R, Schulze W, Seki M, Shimizu KK, Slotkin K, Small I, Somers D, Sozzani R, Spillane C, Srinivasan R, Taylor N, Tello-Ruiz M-K, Thelen J, Tohge T, Town C, Toyoda T, Uzilday B, Walley J, Ware D, Weckwerth W, Whitelegge J, Wienkoop S, Wright C, Wrzaczek M, Yamazaki M, Yanovsky M, Žárský V, Zhong X, Van De Peer Y, Van Wijk K, Von Gillhaussen P, The Multinational Arabidopsis Steering Committee. Plant Direct; 4(7):e00248.

Date published: July 1, 2020
Featured in this article: David Mendoza-Cózatl, Scott Peck, , Jay Thelen.

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Multi-targeted trehalose-6-phosphate phosphatase I harbors a novel peroxisomal targeting signal 1 and is essential for flowering and development. Kataya ARA, Elshobaky A, Heidari B, Dugassa N-F, Thelen JJ, Lillo C. Planta; 251(5):98.

Date published: May 1, 2020
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2019

The lipid biochemistry of eukaryotic algae. Li-Beisson Y, Thelen JJ, Fedosejevs E, Harwood JL. Progress in Lipid Research; 74:31-68.

Date published: April 1, 2019
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Terpenoid esters are the major constituents from leaf lipid droplets of Camellia sinensis. Zhou X, Chen X, Du Z, Zhang Y, Zhang W, Kong X, Thelen JJ, Chen C, Chen M. Frontiers in Plant Science; 10:179.

Date published: March 7, 2019
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2018

Proteomic characterization of bradyrhizobium diazoefficiens bacteroids reveals a post-symbiotic, hemibiotrophic-like lifestyle of the bacteria within senescing soybean nodules. Strodtman KN, Frank S, Stevenson S, Thelen JJ, Emerich DW. International Journal of Molecular Sciences; 19(12):3947.

Date published: December 1, 2018
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Embryogenic Competence Acquisition in Sugar Cane Callus Is Associated with Differential H ⁺ -Pump Abundance and Activity. Passamani LZ, Bertolazi AA, Ramos AC, Santa-Catarina C, Thelen JJ, Silveira V. Journal of Proteome Research; 17(8):2767-2779.

Date published: August 3, 2018
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Variation in seed allergen content from three varieties of soybean cultivated in nine different locations in Iowa, Illinois, and Indiana. McClain S, Stevenson SE, Brownie C, Herouet-Guicheney C, Herman RA, Ladics GS, Privalle L, Ward JM, Doerrer N, Thelen JJ. Frontiers in Plant Science; 9:1025.

Date published: July 23, 2018
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Controlled chemical modification of biomolecules by femtosecond laser in polar liquids. Gruzdev V, Korkin D, Mooney BP, Havelund JF, Møller IM, Thelen JJ. Proceedings - International Conference Laser Optics 2018, ICLO 2018; 595.

Date published: June 4, 2018
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MU-LOC: A machine-learning method for predicting mitochondrially localized proteins in plants. Zhang N, Rao RSP, Salvato F, Havelund JF, Møller IM, Thelen JJ, Xu D. Frontiers in Plant Science; 9:634.

Date published: May 23, 2018
Featured in this article: Jay Thelen, Dong Xu.

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Controlled laser biochemistry in room-temperature polar liquids by ultrashort laser pulses. Gruzdev V, Korkin D, Mooney BP, Havelund JF, Møller IM, Thelen JJ. Optics InfoBase Conference Papers; Part F92-CLEO_AT 2018:Code 139958.

Date published: May 13, 2018
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Controlled laser biochemistry in room-temperature polar liquids by ultrashort laser pulses. Gruzdev V, Korkin D, Mooney BP, Havelund JF, Møller IM, Thelen JJ. 2018 Conference on Lasers and Electro-Optics, CLEO 2018 - Proceedings; 8426282.

Date published: May 13, 2018
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In Vivo Quantitative Monitoring of Subunit Stoichiometry for Metabolic Complexes. Wilson RS, Thelen JJ. Journal of Proteome Research; 17(5):1773-1783.

Date published: May 4, 2018
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Absolute Quantitation of Plant Proteins. Ahsan N, Wilson RS, Thelen JJ. Current protocols in plant biology; 3(1):1-13.

Date published: March 1, 2018
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2017

Extracellular ATP elicits DORN1-mediated RBOHD phosphorylation to regulate stomatal aperture. Chen D, Cao Y, Li H, Kim D, Ahsan N, Thelen J, Stacey G. Nature Communications; 8(1):2265.

Date published: December 1, 2017
Featured in this article: Jay Thelen, Gary Stacey.

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Controlled modification of biomolecules by ultrashort laser pulses in polar liquids. Gruzdev V, Korkin D, Mooney BP, Havelund JF, Møller IM, Thelen JJ. Scientific Reports; 7(1):5550.

Date published: December 1, 2017
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The bacteroid periplasm in soybean nodules is an interkingdom symbiotic space. Strodtman KN, Stevenson SE, Waters JK, Mawhinney TP, Thelen JJ, Polacco JC, Emerich DW. Molecular Plant-Microbe Interactions; 30(12):997-1008.

Date published: December 1, 2017
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Activation of the lrr receptor-like kinase psy1r requires transphosphorylation of residues in the activation loop. Oehlenschlæger CB, Gersby LBA, Ahsan N, Pedersen JT, Kristensen A, Solakova TV, Thelen JJ, Fuglsang AT. Frontiers in Plant Science; 8:2005.

Date published: November 27, 2017
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Luxurious nitrogen fertilization of two sugar cane genotypes contrasting for lignin composition causes changes in the stem proteome related to carbon, nitrogen, and oxidant metabolism but does not alter lignin content. Salvato F, Wilson R, Llerena JPP, Kiyota E, Reis KL, Boaretto LF, Balbuena TS, Azevedo RA, Thelen JJ, Mazzafera P. Journal of Proteome Research; 16(10):3688-3703.

Date published: October 6, 2017
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Comparative proteomic analysis provides insight into the biological role of protein phosphatase inhibitor-2 from Arabidopsis. Ahsan N, Chen M, Salvato F, Wilson RS, Shyama Prasad Rao R, Thelen JJ. Journal of Proteomics; 165:51-60.

Date published: August 8, 2017
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The proteome of higher plant mitochondria. Rao RSP, Salvato F, Thal B, Eubel H, Thelen JJ, Møller IM. Mitochondrion; 33:22-37.

Date published: March 1, 2017
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Editorial. Møller IM, Thelen JJ. Mitochondrion; 33:1.

Date published: March 1, 2017
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Two SERK receptor-like kinases interact with EMS1 to control anther cell fate determination. Li Z, Wang Y, Huang J, Ahsan N, Biener G, Paprocki J, Thelen JJ, Raicu V, Zhao D. Plant Physiology; 173(1):326-337.

Date published: January 1, 2017
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2016

Sunflower HaGPAT9-1 is the predominant GPAT during seed development. Payá-Milans M, Aznar-Moreno JA, Balbuena TS, Haslam RP, Gidda SK, Pérez-Hormaeche J, Mullen RT, Thelen JJ, Napier JA, Salas JJ, Garcés R, Martínez-Force E, Venegas-Calerón M. Plant Science; 252:42-52.

Date published: November 1, 2016
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Regulation and structure of the heteromeric acetyl-CoA carboxylase. Salie MJ, Thelen JJ. Biochimica et Biophysica Acta - Molecular and Cell Biology of Lipids; 1861(9):1207-1213.

Date published: September 1, 2016
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Acyl-lipid desaturase 1 primes cold acclimation response in Arabidopsis. Chen M, Thelen JJ. Physiologia plantarum; 158(1):11-22.

Date published: September 1, 2016
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A family of negative regulators targets the committed step of de novo fatty acid biosynthesisopen. Salie MJ, Zhang N, Lancikova V, Xu D, Thelen JJ. Plant Cell; 28(9):2312-2325.

Date published: September 1, 2016
Featured in this article: Dong Xu, Jay Thelen.

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The Raf-like kinase ILK1 and the high affinity K⁺ transporter HAK5 are required for innate immunity and abiotic stress response. Brauer EK, Ahsan N, Dale R, Kato N, Coluccio AE, Piñeros MA, Kochian LV, Thelen JJ, Popescu SC. Plant Physiology; 171(2):1470-1484.

Date published: June 1, 2016
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Metabolite variation in hybrid corn grain from a large-scale multisite study. Chen M, Rao RSP, Zhang Y, Zhong C, Thelen JJ. Crop Journal; 4(3):177-187.

Date published: June 1, 2016
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2015

A laser ablation ICP-MS based method for multiplexed immunoblot analysis: Applications to manganese-dependent protein dynamics of photosystem II in barley (Hordeum vulgare L.). De Bang TC, Peterson J, Pedas PR, Rogowska-Wrzesinska A, Jensen ON, Schjoerring JK, Jensen PE, Thelen JJ, Husted S. Plant Journal; 83(3):555-565.

Date published: August 1, 2015
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Comparative proteomic analysis of developing rhizomes of the ancient vascular plant equisetum hyemale and different monocot species. Salvato F, Balbuena TS, Nelson W, Rao RSP, He R, Soderlund CA, Gand DR, Thelen JJ. Journal of Proteome Research; 14(4):1779-1791.

Date published: April 3, 2015
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Development of an isoform-specific tandem mass spectrometry assay for absolute quantitation of maize lipid transfer proteins. Stevenson SE, McClain S, Thelen JJ. Journal of Agricultural and Food Chemistry; 63(3):821-828.

Date published: January 28, 2015
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Convergent signaling pathways—interaction between methionine oxidation and serine/threonine/tyrosine O-phosphorylation. Rao RSP, Møller IM, Thelen JJ, Miernyk JA. Cell Stress and Chaperones; 20(1):15-21.

Date published: January 1, 2015
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2014

A modified data normalization method for GC-MS-based metabolomics to minimize batch variation. Chen M, Rao RSP, Zhang Y, Zhong CX, Thelen JJ. SpringerPlus; 3(1):439.

Date published: December 30, 2014
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Is Lys-Ne⁽ᵉᵒᵖᵉⁿ⁾-acetylation the next big thing in post-translational modifications?. Rao RSP, Thelen JJ, Miernyk JA. Trends in Plant Science; 19(9):550-553.

Date published: September 1, 2014
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In silico analysis of protein Lys-Nᵋ -acetylation in plants. Shyama Prasad Rao R, Thelen JJ, Miernyk JA. Frontiers in Plant Science; 5(AUG):381.

Date published: August 4, 2014
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Characteristics and safety assessment of intractable proteins in genetically modified crops. Bushey DF, Bannon GA, Delaney BF, Graser G, Hefford M, Jiang X, Lee TC, Madduri KM, Pariza M, Privalle LS, Ranjan R, Saab-Rincon G, Schafer BW, Thelen JJ, Zhang JXQ, Harper MS. Regulatory Toxicology and Pharmacology; 69(2):154-170.

Date published: July 1, 2014
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A soybean acyl carrier protein, GmACP, Is important for root nodule symbiosis. Wang J, Tóth K, Tanaka K, Nguyen CT, Yan Z, Brechenmacher L, Dahmen J, Chen M, Thelen JJ, Qiu L, Stacey G. Molecular Plant-Microbe Interactions; 27(5):415-423.

Date published: May 1, 2014
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Multisite phosphorylation of 14-3-3 proteins by calcium-dependent protein kinases. Swatek KN, Wilson RS, Ahsan N, Tritz RL, Thelen JJ. Biochemical Journal; 459(1):15-25.

Date published: April 1, 2014
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A systems-wide comparison of red rice (Oryza longistaminata) tissues identifies rhizome specific genes and proteins that are targets for cultivated rice improvement. He R, Salvato F, Park J-J, Kim M-J, Nelson W, Balbuena TS, Willer M, Crow JA, May GD, Soderlund CA, Thelen JJ, Gang DR. BMC Plant Biology; 14(1):46.

Date published: February 12, 2014
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The potato tuber mitochondrial proteome. Salvato F, Havelund JF, Chen M, Shyama Prasad Rao R, Rogowska-Wrzesinska A, Jensen ON, Gang DR, Thelen JJ, Møller IM. Plant Physiology; 164(2):637-653.

Date published: February 1, 2014
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Initial description of the developing soybean seed protein Lys-Nᵋ-acetylome. Smith-Hammond CL, Swatek KN, Johnston ML, Thelen JJ, Miernyk JA. Journal of Proteomics; 96:56-66.

Date published: January 16, 2014
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P³DB 3.0: From plant phosphorylation sites to protein networks. Yao Q, Ge H, Wu S, Zhang N, Chen W, Xu C, Gao J, Thelen JJ, Xu D. Nucleic Acids Research; 42(D1):D1206-D1213.

Date published: January 1, 2014
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Global quantitative proteomics using spectral counting: An inexpensive experimental and bioinformatics workflow for deep proteome coverage. Balbuena TS, Demartini DR, Thelen JJ. Methods in Molecular Biology; 1072:171-183.

Date published: January 1, 2014
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Purification of protein complexes and characterization of protein-protein interactions. Swatek KN, Lee CB, Thelen JJ. Methods in Molecular Biology; 1062:609-628.

Date published: January 1, 2014
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2013

Circles within circles: Crosstalk between protein Ser/Thr/Tyr-phosphorylation and Met oxidation. Rao RSP, Xu D, Thelen JJ, Miernyk JA. BMC Bioinformatics; 14(SUPPL.14):S14.

Date published: October 9, 2013
Featured in this article: Dong Xu, Jay Thelen.

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The response of Asterochloris erici (Ahmadjian) Skaloud et Peksa to desiccation: A proteomic approach. Gasulla F, Jain R, Barreno E, Guéra A, Balbuena TS, Thelen JJ, Oliver MJ. Plant, Cell and Environment; 36(7):1363-1378.

Date published: July 1, 2013
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ACYL-LIPID DESATURASE2 is required for chilling and freezing tolerance in Arabidopsis. Chen M, Thelen JJ. Plant Cell; 25(4):1430-1444.

Date published: April 1, 2013
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Biochemistry, proteomics, and phosphoproteomics of plant mitochondria from non-photosynthetic cells. Havelund JF, Thelen JJ, Møller IM. Frontiers in Plant Science; 4(MAR):51.

Date published: March 13, 2013
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A versatile mass spectrometry-based method to both identify kinase client-relationships and characterize signaling network topology. Ahsan N, Huang Y, Tovar-Mendez A, Swatek KN, Zhang J, Miernyk JA, Xu D, Thelen JJ. Journal of Proteome Research; 12(2):937-948.

Date published: February 1, 2013
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2012

Modulation of protein phosphorylation, N-glycosylationand Lys-acetylation in grape (Vitis vinifera) mesocarp and exocarp owing to Lobesia botrana infection. Melo-Braga MN, Verano-Braga T, León IR, Antonacci D, Nogueira FCS, Thelen JJ, Larsen MR, Palmisano G. Molecular and Cellular Proteomics; 11(10):945-956.

Date published: October 1, 2012
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P³DB: An integrated database for plant protein phosphorylation. Yao Q, Bollinger C, Gao J, Xu D, Thelen JJ. Frontiers in Plant Science; 3(SEP):206.

Date published: September 7, 2012
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Environmental effects on allergen levels in commercially grown non-genetically modified soybeans: Assessing variation across North America. Stevenson SE, Woods CA, Hong B, Kong X, Thelen JJ, Ladics GS. Frontiers in Plant Science; 3(AUG):196.

Date published: August 27, 2012
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Predicting and analyzing protein phosphorylation sites in plants using Musite. Yao Q, Gao J, Bollinger C, Thelen JJ, Xu D. Frontiers in Plant Science; 3(AUG):186.

Date published: August 21, 2012
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“Scanning mutagenesis” of the amino acid sequences flanking phosphorylation site 1 of the mitochondrial pyruvate dehydrogenase complex. Ahsan N, Swatek KN, Zhang J, Miernyk JA, Xu D, Thelen JJ. Frontiers in Plant Science; 3(JUL):153.

Date published: July 16, 2012
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Large-scale proteome comparative analysis of developing rhizomes of the ancient vascular plant Equisetum hyemale. Balbuena TS, He R, Salvato F, Gang DR, Thelen JJ. Frontiers in Plant Science; 3(JUN):131.

Date published: June 26, 2012
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The proteomic future: Where mass spectrometry should be taking us. Thelen JJ, Miernyk JA. Biochemical Journal; 444(2):169-181.

Date published: June 1, 2012
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The absence of heat shock protein HSP101 affects the proteome of mature and germinating maize embryos. Lázaro-Mixteco PE, Nieto-Sotelo J, Swatek KN, Houston NL, Mendoza-Hernández G, Thelen JJ, Dinkova TD. Journal of Proteome Research; 11(6):3246-3258.

Date published: June 1, 2012
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Phosphoproteomic analysis of seed maturation in arabidopsis, rapeseed, and soybean. Meyer LJ, Gao J, Xu D, Thelen JJ. Plant Physiology; 159(1):517-528.

Date published: May 1, 2012
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Next-generation sequencing-based transcriptomic and proteomic analysis of the common reed, Phragmites australis (Poaceae), reveals genes involved in invasiveness and rhizome specificity. He R, Kim M-J, Nelson W, Balbuena TS, Kim R, Kramer R, Crow JA, May GD, Thelen JJ, Soderlund CA, Gang DR. American Journal of Botany; 99(2):232-247.

Date published: February 1, 2012
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KiC Assay: A quantitative mass spectrometry-based approach. Huang Y, Thelen JJ. Methods in Molecular Biology; 893:359-370.

Date published: January 1, 2012
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Erratum: KiC assay: A quantitative mass spectrometry-based approach for kinase client screening and activity analysis (Methods in Molecular Biology 893 (359-370) DOI: 10.1007/978-1-61779-885-6-22). Huang Y, Thelen JJ. Methods in Molecular Biology; 893:E1.

Date published: January 1, 2012
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2011

Mapping the lipoylation site of Arabidopsis thaliana plastidial dihydrolipoamide S-acetyltransferase using mass spectrometry and site-directed mutagenesis. Casteel J, Miernyk JA, Thelen JJ. Plant Physiology and Biochemistry; 49(11):1355-1361.

Date published: November 1, 2011
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Genomically biased accumulation of seed storage proteins in allopolyploid cotton. Hu G, Houston NL, Pathak D, Schmidt L, Thelen JJ, Wendel JF. Genetics; 189(3):1103-1115.

Date published: November 1, 2011
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The 14-3-3 isoforms chi and epsilon differentially bind client proteins from developing Arabidopsis seed. Swatek KN, Graham K, Agrawal GK, Thelen JJ. Journal of Proteome Research; 10(9):4076-4087.

Date published: September 2, 2011
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Plastid uridine salvage activity is required for photoassimilate allocation and partitioning in Arabidopsis. Chen M, Thelen JJ. Plant Cell; 23(8):2991-3006.

Date published: August 1, 2011
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Proteome analysis of leaves of the desiccation-tolerant grass, Sporobolus stapfianus, in response to dehydration. Oliver MJ, Jain R, Balbuena TS, Agrawal G, Gasulla F, Thelen JJ. Phytochemistry; 72(10):1273-1284.

Date published: July 1, 2011
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Comparative proteomics of seed maturation in oilseeds reveals differences in intermediary metabolism. Hajduch M, Matusova R, Houston NL, Thelen JJ. Proteomics; 11(9):1619-1629.

Date published: May 9, 2011
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Proteomic comparison of plastids from developing embryos and leaves of Brassica napus. Demartini DR, Jain R, Agrawal G, Thelen JJ. Journal of Proteome Research; 10(5):2226-2237.

Date published: May 6, 2011
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Proteome analysis of cold acclimation in sunflower. Balbuena TS, Salas JJ, Martínez-Force E, Garcés R, Thelen JJ. Journal of Proteome Research; 10(5):2330-2346.

Date published: May 6, 2011
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Differential proteome analysis of mature and germinated embryos of Araucaria angustifolia. Balbuena TS, Jo L, Pieruzzi FP, Dias LLC, Silveira V, Santa-Catarina C, Junqueira M, Thelen JJ, Shevchenko A, Floh EIS. Phytochemistry; 72(4-5):302-311.

Date published: April 1, 2011
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Quantitation of soybean allergens using tandem mass spectrometry. Houston NL, Lee D-G, Stevenson SE, Ladics GS, Bannon GA, McClain S, Privalle L, Stagg N, Herouet-Guieheney C, MacIntosh SC, Thelen JJ. Journal of Proteome Research; 10(2):763-773.

Date published: February 4, 2011
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Global and targeted proteomics in developing jack bean (Canavalia ensiformis) seedlings: An investigation of urease isoforms mobilization in early stages of development. Demartini DR, Carlini CR, Thelen JJ. Plant Molecular Biology; 75(1):53-65.

Date published: January 1, 2011
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Proteome databases and other online resources for chloroplast research in Arabidopsis. Demartini DR, Carlini CR, Thelen JJ. Methods in Molecular Biology; 775:93-115.

Date published: January 1, 2011
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2010

Musite, a tool for global prediction of general and kinase-specific phosphorylation sites. Gao J, Thelen JJ, Dunker AK, Xu D. Molecular and Cellular Proteomics; 9(12):2586-2600.

Date published: December 1, 2010
Featured in this article: Jay Thelen, Dong Xu.

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Evolution of seed allergen quantification – From antibodies to mass spectrometry. Stevenson SE, Houston NL, Thelen JJ. Regulatory Toxicology and Pharmacology; 58(3):S36-S41.

Date published: December 1, 2010
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Mass spectrometry analysis of soybean seed proteins: Optimization of gel-free quantitative workflow. Lee D-G, Houston NL, Stevenson SE, Ladics GS, McClain S, Privalle L, Thelen JJ. Analytical Methods; 2(10):1577-1583.

Date published: October 1, 2010
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A quantitative mass spectrometry-based approach for identifying protein kinase clients and quantifying kinase activity. Huang Y, Houston NL, Tovar-Mendez A, Stevenson SE, Miernyk JA, Randall DD, Thelen JJ. Analytical Biochemistry; 402(1):69-76.

Date published: July 1, 2010
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Erratum: Genome sequence of the palaeopolyploid soybean (Nature (2010) 463 (178-183)). Schmutz J, Cannon SB, Schlueter J, Ma J, Mitros T, Nelson W, Hyten DL, Song Q, Thelen JJ, Cheng J, Xu D, Hellsten U, May GD, Yu Y, Skaurai T, Umezawa T, Bhattacharyya MK, Sandhu D, Valliyodan B, Lindquist E, Peto M, Grant D, Shu S, Goodstein D, Barry K, Futrell-Griggs M, Abernathy B, Du J, Tian Z, Zhu L, Gill N, Joshi T, Libault M, Sethuraman A, Zhang X-C, Shinozaki K, Nguyen HT, Wing RA, Cregan P, Specht J, Grimwood J, Rokhsar D, Stacey G, Shoemaker RC, Jackson SA. Nature; 465(7294):120.

Date published: May 6, 2010
Featured in this article: Jay Thelen, Dong Xu, Trupti Joshi, Gary Stacey.

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Systems analysis of seed filling in Arabidopsis: Using general linear modeling to assess concordance of transcript and protein expression. Hajduch M, Hearne LB, Miernyk JA, Casteel JE, Joshi T, Agrawal GK, Song Z, Zhou M, Xu D, Thelen JJ. Plant Physiology; 152(4):2078-2087.

Date published: April 1, 2010
Featured in this article: Trupti Joshi, Dong Xu, Jay Thelen.

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Genome sequence of the palaeopolyploid soybean. Schmutz J, Cannon SB, Schlueter J, Ma J, Mitros T, Nelson W, Hyten DL, Song Q, Thelen JJ, Cheng J, Xu D, Hellsten U, May GD, Yu Y, Skaurai T, Umezawa T, Bhattacharyya MK, Sandhu D, Valliyodan B, Lindquist E, Peto M, Grant D, Shu S, Goodstein D, Barry K, Futrell-Griggs M, Abernathy B, Du J, Tian Z, Zhu L, Gill N, Joshi T, Libault M, Sethuraman A, Zhang X-C, Shinozaki K, Nguyen HT, Wing RA, Cregan P, Specht J, Grimwood J, Rokhsar D, Stacey G, Shoemaker RC, Jackson SA. Nature; 463(7278):178-183.

Date published: January 14, 2010
Featured in this article: Jay Thelen, Dong Xu, Trupti Joshi, Gary Stacey.

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The plastid isoform of triose phosphate isomerase is required for the postgerminative transition from heterotrophic to autotrophic growth in Arabidopsis. Chen M, Thelen JJ. Plant Cell; 22(1):77-90.

Date published: January 1, 2010
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The essential role of plastidial triose phosphate isomerase in the integration of seed reserve mobilization and seedling establishment. Chen M, Thelen JJ. Plant Signaling and Behavior; 5(5):583-585.

Date published: January 1, 2010
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2009

Quantitative proteomics of seed filling in castor: Comparison with soybean and rapeseed reveals differences between photosynthetic and nonphotosynthetic seed metabolism. Houston NL, Hajduch M, Thelen JJ. Plant Physiology; 151(2):857-868.

Date published: October 1, 2009
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Spontaneous and induced variability of allergens in commodity crops: Ara h 2 in peanut as a case study. Ozias-Akins P, Ramos ML, Faustinelli P, Chu Y, Maleki S, Thelen JJ, Huntley J, Arias K, Jordana M. Regulatory Toxicology and Pharmacology; 54(3 SUPPL.):S37-S40.

Date published: August 1, 2009
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Proteomics tools and resources for investigating protein allergens in oilseeds. Thelen JJ. Regulatory Toxicology and Pharmacology; 54(3 SUPPL.):S41-S45.

Date published: August 1, 2009
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System analysis of an arabidopsis mutant altered in de novo fatty acid synthesis reveals diverse changes in seed composition and metabolism. Chen M, Mooney BP, Hajduch M, Joshi T, Zhou M, Xu D, Thelen JJ. Plant Physiology; 150(1):27-41.

Date published: May 1, 2009
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Validation of gel-free, label-free quantitative proteomics approaches: Applications for seed allergen profiling. Stevenson SE, Chu Y, Ozias-Akins P, Thelen JJ. Journal of Proteomics; 72(3):555-566.

Date published: April 13, 2009
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A new machine learning approach for protein phosphorylation site prediction in plants. Gao J, Agrawal GK, Thelen JJ, Obradovic Z, Dunker AK, Xu D. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); 5462 LNBI:18-29.

Date published: April 8, 2009
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A high-resolution two dimensional Gel- and Pro-Q DPS-based proteomics workflow for phosphoprotein identification and quantitative profiling. Agrawal GK, Thelen JJ. Methods in molecular biology (Clifton, N.J.); 527:3-19, ix.

Date published: January 1, 2009
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P³DB: A plant protein phosphorylation database. Gao J, Agrawal GK, Thelen JJ, Xu D. Nucleic Acids Research; 37(SUPPL. 1):D960-D962.

Date published: January 1, 2009
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2008

Reduction of IgE binding and nonpromotion of Aspergillus flavus fungal growth by simultaneously silencing Ara h 2 and Ara h 6 in peanut. Chu Y, Faustinelli P, Ramos ML, Hajduch M, Stevenson S, Thelen JJ, Maleki SJ, Cheng H, Ozias-Akins P. Journal of Agricultural and Food Chemistry; 56(23):11225-11233.

Date published: December 10, 2008
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In-depth investigation of the soybean seed-filling proteome and comparison with a parallel study of rapeseed. Agrawal GK, Hajduch M, Graham K, Thelen JJ. Plant Physiology; 148(1):504-518.

Date published: September 1, 2008
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Purification and proteomic characterization of plastids from Brassica napus developing embryos. Jain R, Katavic V, Agrawal GK, Guzov VM, Thelen JJ. Proteomics; 8(16):3397-3405.

Date published: August 1, 2008
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Neural cell adhesion molecule (NCAM) marks adult myogenic cells committed to differentiation. Capkovic KL, Stevenson S, Johnson MC, Thelen JJ, Cornelison DDW. Experimental Cell Research; 314(7):1553-1564.

Date published: April 15, 2008
Featured in this article: Marc Johnson, Jay Thelen, D Cornelison.

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Biochemical approaches for discovering protein-protein interactions. Miernyk JA, Thelen JJ. Plant Journal; 53(4):597-609.

Date published: February 1, 2008
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2007

Quantitative proteomics in plants: Choices in abundance. Thelen JJ, Peck SC. Plant Cell; 19(11):3339-3346.

Date published: November 1, 2007
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Proteomic analysis of near-isogenic sunflower varieties differing in seed oil traits. Hajduch M, Casteel JE, Tang S, Hearne LB, Knapp S, Thelen JJ. Journal of Proteome Research; 6(8):3232-3241.

Date published: August 1, 2007
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The effects of down-regulating expression of Arabidopsis thaliana membrane-associated acyl-CoA binding protein 2 on acyl-lipid composition. Kojima M, Casteel J, Miernyk JA, Thelen JJ. Plant Science; 172(1):36-44.

Date published: January 1, 2007
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Introduction to proteomics: A brief historical perspective on contemporary approaches. Thelen JJ. Plant Proteomics; 1-13.

Date published: January 1, 2007
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Proteomics of seed development in oilseed crops. Hajduch M, Agrawal GK, Thelen JJ. Plant Proteomics; 137-154.

Date published: January 1, 2007
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Plant proteomics. Šamaj J, Thelen JJ. Plant Proteomics; 1-369.

Date published: January 1, 2007
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2006

Large scale identification and quantitative profiling of phosphoproteins expressed during seed filling in oilseed rape. Agrawal GK, Thelen JJ. Molecular and Cellular Proteomics; 5(11):2044-2059.

Date published: November 1, 2006
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Using quantitative proteomics of Arabidopsis roots and leaves to predict metabolic activity. Mooney BP, Miernyk JA, Michael Greenlief C, Thelen JJ. Physiologia Plantarum; 128(2):237-250.

Date published: October 1, 2006
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Protein and lipid composition analysis of oil bodies from two Brassica napus cultivars. Katavic V, Agrawal GK, Hajduch M, Harris SL, Thelen JJ. Proteomics; 6(16):4586-4598.

Date published: August 1, 2006
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Erratum: Proteomic analysis of seed filling in Brassica napus. Developmental characterization of metabolic isozymes using high-resolution two-dimensional gel electrophoresis (Plant Physiology (2006) 141, (32-46)). Hajduch M, Casteel JE, Hurrelmeyer KE, Song Z, Agrawal GK, Thelen JJ. Plant Physiology; 141(3):1159.

Date published: July 1, 2006
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Proteomic analysis of seed filling in Brassica napus. Developmental characterization of metabolic isozymes using high-resolution two-dimensional gel electrophoresis. Hajduch M, Casteel JE, Hurrelmeyer KE, Song Z, Agrawal GK, Thelen JJ. Plant Physiology; 141(1):32-46.

Date published: May 1, 2006
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2005

Development of a simplified, economical polyacrylamide gel staining protocol for phosphoproteins. Agrawal GK, Thelen JJ. Proteomics; 5(18):4684-4688.

Date published: December 1, 2005
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Proteomic analysis of soybean root hairs after infection by Bradyrhizobium japonicum. Wan J, Torres M, Ganapathy A, Thelen J, DaGue BB, Mooney B, Xu D, Stacey G. Molecular Plant-Microbe Interactions; 18(5):458-467.

Date published: May 1, 2005
Featured in this article: Jay Thelen, Dong Xu, Gary Stacey.

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Proteomic characterization of A triton-insoluble fraction from chloroplasts defines A novel group of proteins associated with macromolecular structures. Phinney BS, Thelen JJ. Journal of Proteome Research; 4(2):497-506.

Date published: March 1, 2005
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Erratum: High-throughput peptide mass fingerprinting of soybean seed proteins: Automated workflow and utility of UniGene expressed sequence tag databases for protein identification (Phytochemistry (2004) 65 (1733-1744) DOI: 10.1016/j.phytochem.2004.04.011). Mooney B, Thelen JJ. Phytochemistry; 66(3):383.

Date published: February 1, 2005
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A systematic proteomic study of seed filling in soybean. Establishment of high-resolution two-dimensional reference maps, expression profiles, and an interactive proteome database. Hajduch M, Ganapathy A, Stein JW, Thelen JJ. Plant Physiology; 137(4):1397-1419.

Date published: January 1, 2005
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2004

The identification of a sequence related to apicomplexan enolase from Sarcocystis neurona. Wilson AP, Thelen JJ, Lakritz J, Brown CR, Marsh AE. Parasitology Research; 94(5):354-360.

Date published: November 1, 2004
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Statistical assessment for mass-spec protein identification using peptide fingerprinting approach. Ganapathy A, Wan X-F, Wan J, Thelen J, Emerich DW, Stacey G, Xu D. Annual International Conference of the IEEE Engineering in Medicine and Biology - Proceedings; 26 IV:3051-3054.

Date published: September 1, 2004
Featured in this article: XiuFeng “Henry” Wan, Jay Thelen, Gary Stacey, Dong Xu.

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High-throughput peptide mass fingerprinting of soybean seed proteins: Automated workflow and utility of UniGene expressed sequence tag databases for protein identification. Mooney BP, Thelen JJ. Phytochemistry; 65(12):1733-1744.

Date published: June 1, 2004
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2003

Arabidopsis genes involved in acyl lipid metabolism. A 2003 census of the candidates, a study of the distribution of expressed sequence tags in organs, and a web-based database. Beisson F, Koo AJK, Ruuska S, Schwender J, Pollard M, Thelen JJ, Paddock T, Salas JJ, Savage L, Milcamps A, Mhaske VB, Cho Y, Ohlrogge JB. Plant Physiology; 132(2):681-697.

Date published: June 1, 2003
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Characterization of cyclopropane fatty-acid synthase from Sterculia foetida. Bao X, Thelen JJ, Bonaventure G, Ohlrogge JB. Journal of Biological Chemistry; 278(15):12846-12853.

Date published: April 11, 2003
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2002

Both antisense and sense expression of biotin carboxyl carrier protein isoform 2 inactivates the plastid acetyl-coenzyme A carboxylase in Arabidopsis thaliana. Thelen JJ, Ohlrogge JB. Plant Journal; 32(4):419-431.

Date published: November 1, 2002
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The multisubunit acetyl-CoA carboxylase is strongly associated with the chloroplast envelope through non-ionic interactions to the carboxyltransferase subunits. Thelen JJ, Ohlrogge JB. Archives of Biochemistry and Biophysics; 400(2):245-257.

Date published: April 15, 2002
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Metabolic engineering of fatty acid biosynthesis in plants. Thelen JJ, Ohlrogge JB. Metabolic Engineering; 4(1):12-21.

Date published: January 1, 2002
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2001

ZMPP2, a novel type-2C protein phosphatase from maize. Broz AK, Thelen JJ, Muszynski MG, Miernyk JA, Randall DD. Journal of Experimental Botany; 52(361):1739-1740.

Date published: January 1, 2001
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Brassicaceae express multiple isoforms of biotin carboxyl carrier protein in a tissue-specific manner. Thelen JJ, Mekhedov S, Ohlrogge JB. Plant Physiology; 125(4):2016-2028.

Date published: January 1, 2001
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2000

Pyruvate dehydrogenase kinase from Arabidopsis thaliana: A protein histidine kinase that phosphorylates serine residues. Thelen JJ, Miernyk JA, Randall DD. Biochemical Journal; 349(1):195-201.

Date published: July 1, 2000
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Histidine modifying agents abolish pyruvate dehydrogenase kinase activity. Mooney B, David NR, Thelen JJ, Miernyk JA, Randall DD. Biochemical and Biophysical Research Communications; 267(2):500-503.

Date published: January 19, 2000
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Biotin carboxyl carrier protein isoforms in Brassicaceae oilseeds. Thelen JJ, Mekhedov S, Ohlrogge JB. Biochemical Society Transactions; 28(6):595-598.

Date published: January 1, 2000
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1999

The dihydrolipoamide S-acetyltransferase subunit of the mitochondrial pyruvate dehydrogenase complex from maize contains a single lipoyl domain. Thelen JJ, Muszynski MG, David NR, Luethy MH, Elthon TE, Miernyk JA, Randall DD. Journal of Biological Chemistry; 274(31):21769-21775.

Date published: July 30, 1999
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Molecular cloning and expression analysis of the mitochondrial pyruvate dehydrogenase from maize. Thelen JJ, Miernyk JA, Randall DD. Plant Physiology; 119(2):635-643.

Date published: February 1, 1999
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1998

Molecular analysis of two pyruvate dehydrogenase kinases from maize. Thelen JJ, Muszynski MG, Miernyk JA, Randall DD. Journal of Biological Chemistry; 273(41):26618-26623.

Date published: October 9, 1998
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Partial Purification and Characterization of the Maize Mitochondrial Pyruvate Dehydrogenase Complex. Thelen JJ, Miernyk JA, Randall DD. Plant Physiology; 116(4):1443-1450.

Date published: January 1, 1998
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1995

Purification, characterization, and submitochondrial localization of a 58-kilodalton NAD(P)H dehydrogenase. Luethy MH, Thelen JJ, Knudten AF, Elthon TE. Plant Physiology; 107(2):443-450.

Date published: February 1, 1995
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1994

Purification, characterization, and submitochondrial localization of the 32-kilodalton NADH dehydrogenase from maize. Knudten AF, Thelen JJ, Luethy MH, Elthon TE. Plant Physiology; 106(3):1115-1122.

Date published: November 1, 1994
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