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Hong An
Genes derived from ancient polyploidy have higher genetic diversity and are associated with domestication in Brassica rapa. Qi X, An H, Hall TE, Di C, Blischak PD, McKibben MTW, Hao Y, Conant GC, Pires JC, Barker MS. New Phytologist; 230(1):372-386.
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Phylogeny and multiple independent whole-genome duplication events in the Brassicales. Mabry ME, Brose JM, Blischak PD, Sutherland B, Dismukes WT, Bottoms CA, Edger PP, Washburn JD, An H, Hall JC, McKain MR, Al-Shehbaz I, Barker MS, Schranz ME, Conant GC, Pires JC. American Journal of Botany; 107(8):1148-1164.
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Independent evolution of ancestral and novel defenses in a genus of toxic plants (Erysimum, brassicaceae). Züst T, Strickler SR, Powell AF, Mabry ME, An H, Mirzaei M, York T, Holland CK, Kumar P, Erb M, Petschenka G, Gómez J-M, Perfectti F, Müller C, Pires JC, Mueller LA, Jander G. eLife; 9:e51712.
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Transcriptome and organellar sequencing highlights the complex origin and diversification of allotetraploid Brassica napus. An H, Qi X, Gaynor ML, Hao Y, Gebken SC, Mabry ME, McAlvay AC, Teakle GR, Conant GC, Barker MS, Fu T, Yi B, Pires JC. Nature Communications; 10(1):2878.
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One thousand plant transcriptomes and the phylogenomics of green plants. Leebens-Mack JH, Barker MS, Carpenter EJ, Deyholos MK, Gitzendanner MA, Graham SW, Grosse I, Li Z, Melkonian M, Mirarab S, Porsch M, Quint M, Rensing SA, Soltis DE, Soltis PS, Stevenson DW, Ullrich KK, Wickett NJ, DeGironimo L, Edger PP, Jordon-Thaden IE, Joya S, Liu T, Melkonian B, Miles NW, Pokorny L, Quigley C, Thomas P, Villarreal JC, Augustin MM, Barrett MD, Baucom RS, Beerling DJ, Benstein RM, Biffin E, Brockington SF, Burge DO, Burris JN, Burris KP, Burtet-Sarramegna V, Caicedo AL, Cannon SB, Çebi Z, Chang Y, Chater C, Cheeseman JM, Chen T, Clarke ND, Clayton H, Covshoff S, Crandall-Stotler BJ, Cross H, dePamphilis CW, Der JP, Determann R, Dickson RC, Di Stilio VS, Ellis S, Fast E, Feja N, Field KJ, Filatov DA, Finnegan PM, Floyd SK, Fogliani B, García N, Gâteblé G, Godden GT, Goh FQY, Greiner S, Harkess A, Heaney JM, Helliwell KE, Heyduk K, Hibberd JM, Hodel RGJ, Hollingsworth PM, Johnson MTJ, Jost R, Joyce B, Kapralov MV, Kazamia E, Kellogg EA, Koch MA, Von Konrat M, Könyves K, Kutchan TM, Lam V, Larsson A, Leitch AR, Lentz R, Li F-W, Lowe AJ, Ludwig M, Manos PS, Mavrodiev E, McCormick MK, McKain M, McLellan T, McNeal JR, Miller RE, Nelson MN, Peng Y, Ralph P, Real D, Riggins CW, Ruhsam M, Sage RF, Sakai AK, Scascitella M, Schilling EE, Schlösser E-M, Sederoff H, Servick S, Sessa EB, Shaw AJ, Shaw SW, Sigel EM, Skema C, Smith AG, Smithson A, Stewart CN Jr, Stinchcombe JR, Szövényi P, Tate JA, Tiebel H, Trapnell D, Villegente M, Wang C-N, Weller SG, Wenzel M, Weststrand S, Westwood JH, Whigham DF, Wu S, Wulff AS, Yang Y, Zhu D, Zhuang C, Zuidof J, Chase MW, Pires JC, Rothfels CJ, Yu J, Chen C, Chen L, Cheng S, Li J, Li R, Li X, Lu H, Ou Y, Sun X, Tan X, Tang J, Tian Z, Wang F, Wang J, Wei X, Xu X, Yan Z, Yang F, Zhong X, Zhou F, Zhu Y, Zhang Y, Ayyampalayam S, Barkman TJ, Nguyen N-P, Matasci N, Nelson DR, Sayyari E, Wafula EK, Walls RL, Warnow T, An H, Arrigo N, Baniaga AE, Galuska S, Jorgensen SA, Kidder TI, Kong H, Lu-Irving P, Marx HE, Qi X, Reardon CR, Sutherland BL, Tiley GP, Welles SR, Yu R, Zhan S, Gramzow L, Theißen G, Wong GK-S, One Thousand Plant Transcriptomes Initiative. Nature; 574(7780):679-685.
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Establishing CRISPR/Cas13a immune system conferring RNA virus resistance in both dicot and monocot plants. Zhang T, Zhao Y, Ye J, Cao X, Xu C, Chen B, An H, Jiao Y, Zhang F, Yang X, Zhou G. Plant Biotechnology Journal; 17(7):1185-1187.
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Genome-wide DNA methylation comparison between Brassica napus genic male sterile line and restorer line. Wang Z, Wu X, Wu Z, An H, Yi B, Wen J, Ma C, Shen J, Fu T, Tu J. International Journal of Molecular Sciences; 19(9):2689.
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Establishing RNA virus resistance in plants by harnessing CRISPR immune system. Zhang T, Zheng Q, Yi X, An H, Zhao Y, Ma S, Zhou G. Plant Biotechnology Journal; 16(8):1415-1423.
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Topological data analysis as a morphometric method: Using persistent homology to demarcate a leaf morphospace. Li M, An H, Angelovici R, Bagaza C, Batushansky A, Clark L, Coneva V, Donoghue MJ, Edwards E, Fajardo D, Fang H, Frank MH, Gallaher T, Gebken S, Hill T, Jansky S, Kaur B, Klahs PC, Klein LL, Kuraparthy V, Londo J, Migicovsky Z, Miller A, Mohn R, Myles S, Otoni WC, Pires JC, Rieffer E, Schmerler S, Spriggs E, Topp CN, Van Deynze A, Zhang K, Zhu L, Zink BM, Chitwood DH. Frontiers in Plant Science; 9:553.
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Genomic inferences of domestication events are corroborated by written records in Brassica rapa. Qi X, An H, Ragsdale AP, Hall TE, Gutenkunst RN, Chris Pires J, Barker MS. Molecular Ecology; 26(13):3373-3388.
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Population structure and phylogenetic relationships in a diverse panel of Brassica rapa L. Bird KA, An H, Gazave E, Gore MA, Pires JC, Robertson LD, Labate JA. Frontiers in Plant Science; 8:321.
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A Mitochondria-Targeted PPR Protein Restores pol Cytoplasmic Male Sterility by Reducing orf224 Transcript Levels in Oilseed Rape. Liu Z, Yang Z, Wang X, Li K, An H, Liu J, Yang G, Fu T, Yi B, Hong D. Molecular Plant; 9(7):1082-1084.
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Comparative analysis of the Brassica napus root and leaf transcript profiling in response to drought stress. Liu C, Zhang X, Zhang K, An H, Hu K, Wen J, Shen J, Ma C, Yi B, Tu J, Fu T. International Journal of Molecular Sciences; 16(8):18752-18777.
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Comparative transcript profiling of the fertile and sterile flower buds of pol CMS in B. napus. An H, Yang Z, Yi B, Wen J, Shen J, Tu J, Ma C, Fu T. BMC Genomics; 15(1):258.
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